Multiple sequence alignment - TraesCS7A01G540800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G540800 chr7A 100.000 1655 0 0 589 2243 717452708 717454362 0.000000e+00 3057.0
1 TraesCS7A01G540800 chr7A 100.000 361 0 0 1 361 717452120 717452480 0.000000e+00 667.0
2 TraesCS7A01G540800 chr7A 90.411 146 14 0 102 247 717378564 717378709 2.270000e-45 193.0
3 TraesCS7A01G540800 chr7A 82.105 95 9 3 250 337 717256146 717256239 8.590000e-10 75.0
4 TraesCS7A01G540800 chr1A 86.531 1470 173 18 591 2044 362207009 362205549 0.000000e+00 1594.0
5 TraesCS7A01G540800 chr5B 85.056 1258 155 23 591 1835 465519076 465517839 0.000000e+00 1251.0
6 TraesCS7A01G540800 chr6A 84.863 839 104 14 598 1417 378192731 378193565 0.000000e+00 824.0
7 TraesCS7A01G540800 chr6A 97.368 38 1 0 2206 2243 188347253 188347216 5.170000e-07 65.8
8 TraesCS7A01G540800 chr5D 84.625 839 107 13 598 1417 339660957 339660122 0.000000e+00 815.0
9 TraesCS7A01G540800 chr5D 84.625 839 107 13 598 1417 521178835 521179670 0.000000e+00 815.0
10 TraesCS7A01G540800 chr5D 84.029 839 112 13 598 1417 38319165 38320000 0.000000e+00 787.0
11 TraesCS7A01G540800 chr5D 84.371 755 94 15 598 1332 486189125 486188375 0.000000e+00 719.0
12 TraesCS7A01G540800 chr5D 95.000 40 2 0 2204 2243 72485763 72485724 1.860000e-06 63.9
13 TraesCS7A01G540800 chr7D 84.148 839 111 13 598 1417 453546934 453546099 0.000000e+00 793.0
14 TraesCS7A01G540800 chr7D 88.088 319 23 9 27 337 621817425 621817736 4.550000e-97 364.0
15 TraesCS7A01G540800 chr7D 82.353 170 23 5 1222 1387 102950093 102950259 8.350000e-30 141.0
16 TraesCS7A01G540800 chr7D 80.447 179 25 8 1217 1390 39136023 39135850 6.500000e-26 128.0
17 TraesCS7A01G540800 chr6D 83.970 811 104 17 627 1417 17267904 17268708 0.000000e+00 754.0
18 TraesCS7A01G540800 chr3B 81.829 831 116 27 607 1415 605450381 605451198 0.000000e+00 665.0
19 TraesCS7A01G540800 chr3B 84.483 116 17 1 1222 1337 858242 858128 1.820000e-21 113.0
20 TraesCS7A01G540800 chr7B 88.926 298 25 3 48 337 717888332 717888035 5.890000e-96 361.0
21 TraesCS7A01G540800 chr7B 77.931 145 25 4 209 346 718094554 718094410 1.430000e-12 84.2
22 TraesCS7A01G540800 chr1D 79.904 209 30 9 1222 1422 450113205 450113409 2.320000e-30 143.0
23 TraesCS7A01G540800 chr1B 83.230 161 22 3 1217 1375 591359033 591358876 2.320000e-30 143.0
24 TraesCS7A01G540800 chr2B 76.777 211 33 10 1222 1422 66755706 66755910 1.100000e-18 104.0
25 TraesCS7A01G540800 chr2B 87.755 49 6 0 2195 2243 250486559 250486607 8.650000e-05 58.4
26 TraesCS7A01G540800 chr4D 100.000 36 0 0 2208 2243 454231747 454231782 1.440000e-07 67.6
27 TraesCS7A01G540800 chr4D 95.122 41 0 2 2205 2243 343678929 343678889 1.860000e-06 63.9
28 TraesCS7A01G540800 chr4A 100.000 36 0 0 2208 2243 517440439 517440474 1.440000e-07 67.6
29 TraesCS7A01G540800 chr3D 100.000 36 0 0 2208 2243 371497854 371497819 1.440000e-07 67.6
30 TraesCS7A01G540800 chr3D 85.965 57 7 1 2187 2243 186947877 186947932 2.410000e-05 60.2
31 TraesCS7A01G540800 chr5A 86.538 52 5 2 2192 2243 535791396 535791445 3.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G540800 chr7A 717452120 717454362 2242 False 1862 3057 100.000 1 2243 2 chr7A.!!$F3 2242
1 TraesCS7A01G540800 chr1A 362205549 362207009 1460 True 1594 1594 86.531 591 2044 1 chr1A.!!$R1 1453
2 TraesCS7A01G540800 chr5B 465517839 465519076 1237 True 1251 1251 85.056 591 1835 1 chr5B.!!$R1 1244
3 TraesCS7A01G540800 chr6A 378192731 378193565 834 False 824 824 84.863 598 1417 1 chr6A.!!$F1 819
4 TraesCS7A01G540800 chr5D 339660122 339660957 835 True 815 815 84.625 598 1417 1 chr5D.!!$R2 819
5 TraesCS7A01G540800 chr5D 521178835 521179670 835 False 815 815 84.625 598 1417 1 chr5D.!!$F2 819
6 TraesCS7A01G540800 chr5D 38319165 38320000 835 False 787 787 84.029 598 1417 1 chr5D.!!$F1 819
7 TraesCS7A01G540800 chr5D 486188375 486189125 750 True 719 719 84.371 598 1332 1 chr5D.!!$R3 734
8 TraesCS7A01G540800 chr7D 453546099 453546934 835 True 793 793 84.148 598 1417 1 chr7D.!!$R2 819
9 TraesCS7A01G540800 chr6D 17267904 17268708 804 False 754 754 83.970 627 1417 1 chr6D.!!$F1 790
10 TraesCS7A01G540800 chr3B 605450381 605451198 817 False 665 665 81.829 607 1415 1 chr3B.!!$F1 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.031178 GTCAAACTGCTGCCAACCTG 59.969 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2221 0.026803 GGCTAATGTTTGCTCGCGAG 59.973 55.0 31.37 31.37 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.899661 ATGTATGTGTACACTAAACCATATTGT 57.100 29.630 25.60 3.59 43.21 2.71
27 28 9.157104 TGTATGTGTACACTAAACCATATTGTG 57.843 33.333 25.60 0.00 35.94 3.33
28 29 6.489127 TGTGTACACTAAACCATATTGTGC 57.511 37.500 25.60 0.00 32.49 4.57
29 30 6.234920 TGTGTACACTAAACCATATTGTGCT 58.765 36.000 25.60 0.00 32.49 4.40
30 31 6.712998 TGTGTACACTAAACCATATTGTGCTT 59.287 34.615 25.60 0.00 32.49 3.91
31 32 7.229707 TGTGTACACTAAACCATATTGTGCTTT 59.770 33.333 25.60 0.00 32.49 3.51
32 33 7.537306 GTGTACACTAAACCATATTGTGCTTTG 59.463 37.037 18.92 0.00 32.49 2.77
33 34 6.024552 ACACTAAACCATATTGTGCTTTGG 57.975 37.500 0.00 0.00 35.31 3.28
34 35 5.772672 ACACTAAACCATATTGTGCTTTGGA 59.227 36.000 0.00 0.00 33.36 3.53
35 36 6.092748 CACTAAACCATATTGTGCTTTGGAC 58.907 40.000 0.00 0.00 33.36 4.02
36 37 4.535526 AAACCATATTGTGCTTTGGACC 57.464 40.909 0.00 0.00 33.36 4.46
37 38 3.168035 ACCATATTGTGCTTTGGACCA 57.832 42.857 0.00 0.00 33.36 4.02
38 39 3.091545 ACCATATTGTGCTTTGGACCAG 58.908 45.455 0.00 0.00 33.36 4.00
39 40 3.245229 ACCATATTGTGCTTTGGACCAGA 60.245 43.478 0.00 0.00 33.36 3.86
40 41 3.956199 CCATATTGTGCTTTGGACCAGAT 59.044 43.478 0.00 0.00 0.00 2.90
41 42 4.403432 CCATATTGTGCTTTGGACCAGATT 59.597 41.667 0.00 0.00 0.00 2.40
42 43 3.947910 ATTGTGCTTTGGACCAGATTG 57.052 42.857 0.00 0.00 0.00 2.67
43 44 2.363306 TGTGCTTTGGACCAGATTGT 57.637 45.000 0.00 0.00 0.00 2.71
44 45 3.500448 TGTGCTTTGGACCAGATTGTA 57.500 42.857 0.00 0.00 0.00 2.41
45 46 3.826524 TGTGCTTTGGACCAGATTGTAA 58.173 40.909 0.00 0.00 0.00 2.41
46 47 3.568007 TGTGCTTTGGACCAGATTGTAAC 59.432 43.478 0.00 0.00 0.00 2.50
47 48 3.568007 GTGCTTTGGACCAGATTGTAACA 59.432 43.478 0.00 0.00 0.00 2.41
48 49 4.218417 GTGCTTTGGACCAGATTGTAACAT 59.782 41.667 0.00 0.00 0.00 2.71
49 50 4.218200 TGCTTTGGACCAGATTGTAACATG 59.782 41.667 0.00 0.00 0.00 3.21
50 51 4.218417 GCTTTGGACCAGATTGTAACATGT 59.782 41.667 0.00 0.00 0.00 3.21
51 52 5.702865 CTTTGGACCAGATTGTAACATGTG 58.297 41.667 0.00 0.00 0.00 3.21
52 53 3.684908 TGGACCAGATTGTAACATGTGG 58.315 45.455 0.00 0.00 0.00 4.17
53 54 3.016736 GGACCAGATTGTAACATGTGGG 58.983 50.000 0.00 0.00 0.00 4.61
54 55 3.308117 GGACCAGATTGTAACATGTGGGA 60.308 47.826 0.00 0.00 0.00 4.37
55 56 4.331968 GACCAGATTGTAACATGTGGGAA 58.668 43.478 0.00 0.00 0.00 3.97
56 57 4.934356 ACCAGATTGTAACATGTGGGAAT 58.066 39.130 0.00 0.00 0.00 3.01
57 58 6.073447 ACCAGATTGTAACATGTGGGAATA 57.927 37.500 0.00 0.00 0.00 1.75
58 59 5.885912 ACCAGATTGTAACATGTGGGAATAC 59.114 40.000 0.00 0.00 0.00 1.89
59 60 6.122277 CCAGATTGTAACATGTGGGAATACT 58.878 40.000 0.00 0.00 0.00 2.12
60 61 6.603201 CCAGATTGTAACATGTGGGAATACTT 59.397 38.462 0.00 0.00 0.00 2.24
61 62 7.122650 CCAGATTGTAACATGTGGGAATACTTT 59.877 37.037 0.00 0.00 0.00 2.66
62 63 8.522830 CAGATTGTAACATGTGGGAATACTTTT 58.477 33.333 0.00 0.00 0.00 2.27
63 64 8.522830 AGATTGTAACATGTGGGAATACTTTTG 58.477 33.333 0.00 0.00 0.00 2.44
64 65 6.582677 TGTAACATGTGGGAATACTTTTGG 57.417 37.500 0.00 0.00 0.00 3.28
65 66 5.478679 TGTAACATGTGGGAATACTTTTGGG 59.521 40.000 0.00 0.00 0.00 4.12
66 67 2.831526 ACATGTGGGAATACTTTTGGGC 59.168 45.455 0.00 0.00 0.00 5.36
67 68 2.685106 TGTGGGAATACTTTTGGGCA 57.315 45.000 0.00 0.00 0.00 5.36
68 69 2.964209 TGTGGGAATACTTTTGGGCAA 58.036 42.857 0.00 0.00 0.00 4.52
69 70 3.515562 TGTGGGAATACTTTTGGGCAAT 58.484 40.909 0.00 0.00 0.00 3.56
70 71 4.678256 TGTGGGAATACTTTTGGGCAATA 58.322 39.130 0.00 0.00 0.00 1.90
71 72 5.087323 TGTGGGAATACTTTTGGGCAATAA 58.913 37.500 0.00 0.00 0.00 1.40
72 73 5.544176 TGTGGGAATACTTTTGGGCAATAAA 59.456 36.000 0.00 0.00 0.00 1.40
73 74 6.106003 GTGGGAATACTTTTGGGCAATAAAG 58.894 40.000 0.00 0.00 37.38 1.85
74 75 5.782845 TGGGAATACTTTTGGGCAATAAAGT 59.217 36.000 13.06 13.06 44.38 2.66
75 76 6.106003 GGGAATACTTTTGGGCAATAAAGTG 58.894 40.000 16.27 0.00 42.71 3.16
76 77 6.071051 GGGAATACTTTTGGGCAATAAAGTGA 60.071 38.462 16.27 5.94 42.71 3.41
77 78 7.382898 GGAATACTTTTGGGCAATAAAGTGAA 58.617 34.615 16.27 3.50 42.71 3.18
78 79 7.875554 GGAATACTTTTGGGCAATAAAGTGAAA 59.124 33.333 16.27 2.98 42.71 2.69
79 80 9.267084 GAATACTTTTGGGCAATAAAGTGAAAA 57.733 29.630 16.27 2.71 42.71 2.29
80 81 9.620259 AATACTTTTGGGCAATAAAGTGAAAAA 57.380 25.926 16.27 2.44 42.71 1.94
81 82 7.552458 ACTTTTGGGCAATAAAGTGAAAAAG 57.448 32.000 9.20 0.00 41.62 2.27
82 83 6.542005 ACTTTTGGGCAATAAAGTGAAAAAGG 59.458 34.615 9.20 0.00 41.62 3.11
83 84 4.615588 TGGGCAATAAAGTGAAAAAGGG 57.384 40.909 0.00 0.00 0.00 3.95
84 85 3.326297 TGGGCAATAAAGTGAAAAAGGGG 59.674 43.478 0.00 0.00 0.00 4.79
85 86 3.326588 GGGCAATAAAGTGAAAAAGGGGT 59.673 43.478 0.00 0.00 0.00 4.95
86 87 4.314961 GGCAATAAAGTGAAAAAGGGGTG 58.685 43.478 0.00 0.00 0.00 4.61
87 88 3.745975 GCAATAAAGTGAAAAAGGGGTGC 59.254 43.478 0.00 0.00 0.00 5.01
88 89 4.742138 GCAATAAAGTGAAAAAGGGGTGCA 60.742 41.667 0.00 0.00 0.00 4.57
89 90 5.363939 CAATAAAGTGAAAAAGGGGTGCAA 58.636 37.500 0.00 0.00 0.00 4.08
90 91 2.979814 AAGTGAAAAAGGGGTGCAAC 57.020 45.000 0.00 0.00 0.00 4.17
91 92 1.859302 AGTGAAAAAGGGGTGCAACA 58.141 45.000 3.06 0.00 39.98 3.33
92 93 2.397597 AGTGAAAAAGGGGTGCAACAT 58.602 42.857 3.06 0.00 39.98 2.71
93 94 2.102925 AGTGAAAAAGGGGTGCAACATG 59.897 45.455 3.06 0.00 39.98 3.21
94 95 1.202627 TGAAAAAGGGGTGCAACATGC 60.203 47.619 3.06 0.00 45.29 4.06
115 116 3.775661 GCCGTTGGCTATAATGTTTGT 57.224 42.857 0.00 0.00 46.69 2.83
116 117 3.434637 GCCGTTGGCTATAATGTTTGTG 58.565 45.455 0.00 0.00 46.69 3.33
117 118 3.119637 GCCGTTGGCTATAATGTTTGTGT 60.120 43.478 0.00 0.00 46.69 3.72
118 119 4.411327 CCGTTGGCTATAATGTTTGTGTG 58.589 43.478 0.00 0.00 0.00 3.82
119 120 4.083003 CCGTTGGCTATAATGTTTGTGTGT 60.083 41.667 0.00 0.00 0.00 3.72
120 121 4.851014 CGTTGGCTATAATGTTTGTGTGTG 59.149 41.667 0.00 0.00 0.00 3.82
121 122 4.433186 TGGCTATAATGTTTGTGTGTGC 57.567 40.909 0.00 0.00 0.00 4.57
122 123 3.823304 TGGCTATAATGTTTGTGTGTGCA 59.177 39.130 0.00 0.00 0.00 4.57
123 124 4.462132 TGGCTATAATGTTTGTGTGTGCAT 59.538 37.500 0.00 0.00 0.00 3.96
124 125 4.799949 GGCTATAATGTTTGTGTGTGCATG 59.200 41.667 0.00 0.00 0.00 4.06
125 126 5.401550 GCTATAATGTTTGTGTGTGCATGT 58.598 37.500 0.00 0.00 0.00 3.21
126 127 5.286797 GCTATAATGTTTGTGTGTGCATGTG 59.713 40.000 0.00 0.00 0.00 3.21
127 128 3.523606 AATGTTTGTGTGTGCATGTGT 57.476 38.095 0.00 0.00 0.00 3.72
128 129 3.523606 ATGTTTGTGTGTGCATGTGTT 57.476 38.095 0.00 0.00 0.00 3.32
129 130 3.309961 TGTTTGTGTGTGCATGTGTTT 57.690 38.095 0.00 0.00 0.00 2.83
130 131 2.991866 TGTTTGTGTGTGCATGTGTTTG 59.008 40.909 0.00 0.00 0.00 2.93
131 132 2.992543 GTTTGTGTGTGCATGTGTTTGT 59.007 40.909 0.00 0.00 0.00 2.83
132 133 3.309961 TTGTGTGTGCATGTGTTTGTT 57.690 38.095 0.00 0.00 0.00 2.83
133 134 4.440839 TTGTGTGTGCATGTGTTTGTTA 57.559 36.364 0.00 0.00 0.00 2.41
134 135 4.645762 TGTGTGTGCATGTGTTTGTTAT 57.354 36.364 0.00 0.00 0.00 1.89
135 136 4.605968 TGTGTGTGCATGTGTTTGTTATC 58.394 39.130 0.00 0.00 0.00 1.75
136 137 4.337836 TGTGTGTGCATGTGTTTGTTATCT 59.662 37.500 0.00 0.00 0.00 1.98
137 138 5.163571 TGTGTGTGCATGTGTTTGTTATCTT 60.164 36.000 0.00 0.00 0.00 2.40
138 139 5.748152 GTGTGTGCATGTGTTTGTTATCTTT 59.252 36.000 0.00 0.00 0.00 2.52
139 140 5.747675 TGTGTGCATGTGTTTGTTATCTTTG 59.252 36.000 0.00 0.00 0.00 2.77
140 141 5.976534 GTGTGCATGTGTTTGTTATCTTTGA 59.023 36.000 0.00 0.00 0.00 2.69
141 142 6.642131 GTGTGCATGTGTTTGTTATCTTTGAT 59.358 34.615 0.00 0.00 0.00 2.57
142 143 6.641723 TGTGCATGTGTTTGTTATCTTTGATG 59.358 34.615 0.00 0.00 0.00 3.07
143 144 6.642131 GTGCATGTGTTTGTTATCTTTGATGT 59.358 34.615 0.00 0.00 0.00 3.06
144 145 6.641723 TGCATGTGTTTGTTATCTTTGATGTG 59.358 34.615 0.00 0.00 0.00 3.21
145 146 6.862608 GCATGTGTTTGTTATCTTTGATGTGA 59.137 34.615 0.00 0.00 0.00 3.58
146 147 7.543172 GCATGTGTTTGTTATCTTTGATGTGAT 59.457 33.333 0.00 0.00 0.00 3.06
147 148 9.069078 CATGTGTTTGTTATCTTTGATGTGATC 57.931 33.333 0.00 0.00 0.00 2.92
148 149 8.164058 TGTGTTTGTTATCTTTGATGTGATCA 57.836 30.769 0.00 0.00 37.55 2.92
149 150 8.628280 TGTGTTTGTTATCTTTGATGTGATCAA 58.372 29.630 0.00 0.00 46.77 2.57
160 161 6.513806 TTGATGTGATCAATAAACCACCAG 57.486 37.500 0.00 0.00 43.84 4.00
161 162 5.814481 TGATGTGATCAATAAACCACCAGA 58.186 37.500 0.00 0.00 36.11 3.86
162 163 5.882000 TGATGTGATCAATAAACCACCAGAG 59.118 40.000 0.00 0.00 36.11 3.35
163 164 5.497464 TGTGATCAATAAACCACCAGAGA 57.503 39.130 0.00 0.00 0.00 3.10
164 165 6.065976 TGTGATCAATAAACCACCAGAGAT 57.934 37.500 0.00 0.00 0.00 2.75
165 166 7.194112 TGTGATCAATAAACCACCAGAGATA 57.806 36.000 0.00 0.00 0.00 1.98
166 167 7.275183 TGTGATCAATAAACCACCAGAGATAG 58.725 38.462 0.00 0.00 0.00 2.08
167 168 6.708054 GTGATCAATAAACCACCAGAGATAGG 59.292 42.308 0.00 0.00 0.00 2.57
168 169 5.630415 TCAATAAACCACCAGAGATAGGG 57.370 43.478 0.00 0.00 0.00 3.53
169 170 5.036916 TCAATAAACCACCAGAGATAGGGT 58.963 41.667 0.00 0.00 38.10 4.34
170 171 5.130477 TCAATAAACCACCAGAGATAGGGTC 59.870 44.000 0.00 0.00 34.45 4.46
171 172 2.642171 AACCACCAGAGATAGGGTCA 57.358 50.000 0.00 0.00 34.45 4.02
172 173 2.642171 ACCACCAGAGATAGGGTCAA 57.358 50.000 0.00 0.00 34.45 3.18
173 174 2.915869 ACCACCAGAGATAGGGTCAAA 58.084 47.619 0.00 0.00 34.45 2.69
174 175 2.572104 ACCACCAGAGATAGGGTCAAAC 59.428 50.000 0.00 0.00 34.45 2.93
175 176 2.840651 CCACCAGAGATAGGGTCAAACT 59.159 50.000 0.00 0.00 34.45 2.66
176 177 3.369892 CCACCAGAGATAGGGTCAAACTG 60.370 52.174 0.00 0.00 34.45 3.16
177 178 2.237392 ACCAGAGATAGGGTCAAACTGC 59.763 50.000 0.00 0.00 29.34 4.40
178 179 2.503356 CCAGAGATAGGGTCAAACTGCT 59.497 50.000 0.00 0.00 0.00 4.24
179 180 3.529533 CAGAGATAGGGTCAAACTGCTG 58.470 50.000 0.00 0.00 0.00 4.41
180 181 2.093235 AGAGATAGGGTCAAACTGCTGC 60.093 50.000 0.00 0.00 0.00 5.25
181 182 1.065126 AGATAGGGTCAAACTGCTGCC 60.065 52.381 0.00 0.00 0.00 4.85
182 183 0.698238 ATAGGGTCAAACTGCTGCCA 59.302 50.000 0.00 0.00 0.00 4.92
183 184 0.476338 TAGGGTCAAACTGCTGCCAA 59.524 50.000 0.00 0.00 0.00 4.52
184 185 1.109323 AGGGTCAAACTGCTGCCAAC 61.109 55.000 0.00 0.00 0.00 3.77
185 186 1.363807 GGTCAAACTGCTGCCAACC 59.636 57.895 0.00 0.00 0.00 3.77
186 187 1.109323 GGTCAAACTGCTGCCAACCT 61.109 55.000 0.00 0.00 0.00 3.50
187 188 0.031178 GTCAAACTGCTGCCAACCTG 59.969 55.000 0.00 0.00 0.00 4.00
188 189 1.300388 CAAACTGCTGCCAACCTGC 60.300 57.895 0.00 0.00 38.72 4.85
189 190 1.757731 AAACTGCTGCCAACCTGCA 60.758 52.632 0.00 0.00 44.74 4.41
195 196 2.594303 TGCCAACCTGCAGAACCG 60.594 61.111 17.39 0.00 36.04 4.44
196 197 2.281484 GCCAACCTGCAGAACCGA 60.281 61.111 17.39 0.00 0.00 4.69
197 198 2.328099 GCCAACCTGCAGAACCGAG 61.328 63.158 17.39 0.00 0.00 4.63
198 199 2.328099 CCAACCTGCAGAACCGAGC 61.328 63.158 17.39 0.00 0.00 5.03
199 200 2.032681 AACCTGCAGAACCGAGCC 59.967 61.111 17.39 0.00 0.00 4.70
200 201 2.818169 AACCTGCAGAACCGAGCCA 61.818 57.895 17.39 0.00 0.00 4.75
201 202 2.129555 AACCTGCAGAACCGAGCCAT 62.130 55.000 17.39 0.00 0.00 4.40
202 203 1.264749 ACCTGCAGAACCGAGCCATA 61.265 55.000 17.39 0.00 0.00 2.74
203 204 0.107703 CCTGCAGAACCGAGCCATAA 60.108 55.000 17.39 0.00 0.00 1.90
204 205 1.009829 CTGCAGAACCGAGCCATAAC 58.990 55.000 8.42 0.00 0.00 1.89
205 206 0.613260 TGCAGAACCGAGCCATAACT 59.387 50.000 0.00 0.00 0.00 2.24
206 207 1.291132 GCAGAACCGAGCCATAACTC 58.709 55.000 0.00 0.00 0.00 3.01
207 208 1.941325 CAGAACCGAGCCATAACTCC 58.059 55.000 0.00 0.00 32.79 3.85
208 209 0.460311 AGAACCGAGCCATAACTCCG 59.540 55.000 0.00 0.00 32.79 4.63
209 210 0.175073 GAACCGAGCCATAACTCCGT 59.825 55.000 0.00 0.00 32.79 4.69
210 211 0.108329 AACCGAGCCATAACTCCGTG 60.108 55.000 0.00 0.00 32.79 4.94
211 212 1.883084 CCGAGCCATAACTCCGTGC 60.883 63.158 0.00 0.00 32.79 5.34
212 213 1.153647 CGAGCCATAACTCCGTGCA 60.154 57.895 0.00 0.00 32.79 4.57
213 214 0.739462 CGAGCCATAACTCCGTGCAA 60.739 55.000 0.00 0.00 32.79 4.08
214 215 1.668419 GAGCCATAACTCCGTGCAAT 58.332 50.000 0.00 0.00 0.00 3.56
215 216 2.801699 CGAGCCATAACTCCGTGCAATA 60.802 50.000 0.00 0.00 32.79 1.90
216 217 2.802816 GAGCCATAACTCCGTGCAATAG 59.197 50.000 0.00 0.00 0.00 1.73
217 218 2.170607 AGCCATAACTCCGTGCAATAGT 59.829 45.455 0.00 0.00 0.00 2.12
218 219 3.386726 AGCCATAACTCCGTGCAATAGTA 59.613 43.478 0.00 0.00 0.00 1.82
219 220 4.124238 GCCATAACTCCGTGCAATAGTAA 58.876 43.478 0.00 0.00 0.00 2.24
220 221 4.755123 GCCATAACTCCGTGCAATAGTAAT 59.245 41.667 0.00 0.00 0.00 1.89
221 222 5.334105 GCCATAACTCCGTGCAATAGTAATG 60.334 44.000 0.00 0.00 0.00 1.90
222 223 5.179368 CCATAACTCCGTGCAATAGTAATGG 59.821 44.000 0.00 0.00 0.00 3.16
223 224 3.906720 ACTCCGTGCAATAGTAATGGT 57.093 42.857 0.00 0.00 0.00 3.55
224 225 3.531538 ACTCCGTGCAATAGTAATGGTG 58.468 45.455 0.00 0.00 0.00 4.17
225 226 3.055385 ACTCCGTGCAATAGTAATGGTGT 60.055 43.478 0.00 0.00 0.00 4.16
226 227 4.160814 ACTCCGTGCAATAGTAATGGTGTA 59.839 41.667 0.00 0.00 0.00 2.90
227 228 4.435425 TCCGTGCAATAGTAATGGTGTAC 58.565 43.478 0.00 0.00 0.00 2.90
228 229 4.081586 TCCGTGCAATAGTAATGGTGTACA 60.082 41.667 0.00 0.00 0.00 2.90
229 230 4.632251 CCGTGCAATAGTAATGGTGTACAA 59.368 41.667 0.00 0.00 0.00 2.41
230 231 5.122554 CCGTGCAATAGTAATGGTGTACAAA 59.877 40.000 0.00 0.00 0.00 2.83
231 232 6.019152 CGTGCAATAGTAATGGTGTACAAAC 58.981 40.000 0.00 0.00 0.00 2.93
232 233 6.319399 GTGCAATAGTAATGGTGTACAAACC 58.681 40.000 0.00 0.00 40.94 3.27
239 240 3.400439 GGTGTACAAACCAACCGGA 57.600 52.632 9.46 0.00 40.22 5.14
240 241 1.900245 GGTGTACAAACCAACCGGAT 58.100 50.000 9.46 0.00 40.22 4.18
241 242 1.808343 GGTGTACAAACCAACCGGATC 59.192 52.381 9.46 0.00 40.22 3.36
242 243 2.551504 GGTGTACAAACCAACCGGATCT 60.552 50.000 9.46 0.00 40.22 2.75
243 244 2.482721 GTGTACAAACCAACCGGATCTG 59.517 50.000 9.46 1.64 35.59 2.90
244 245 2.369203 TGTACAAACCAACCGGATCTGA 59.631 45.455 9.46 0.00 35.59 3.27
245 246 2.185004 ACAAACCAACCGGATCTGAG 57.815 50.000 9.46 0.00 35.59 3.35
246 247 0.804989 CAAACCAACCGGATCTGAGC 59.195 55.000 9.46 0.00 35.59 4.26
247 248 0.400213 AAACCAACCGGATCTGAGCA 59.600 50.000 9.46 0.00 35.59 4.26
248 249 0.400213 AACCAACCGGATCTGAGCAA 59.600 50.000 9.46 0.00 35.59 3.91
249 250 0.400213 ACCAACCGGATCTGAGCAAA 59.600 50.000 9.46 0.00 35.59 3.68
250 251 1.202879 ACCAACCGGATCTGAGCAAAA 60.203 47.619 9.46 0.00 35.59 2.44
251 252 1.200020 CCAACCGGATCTGAGCAAAAC 59.800 52.381 9.46 0.00 0.00 2.43
252 253 1.135972 CAACCGGATCTGAGCAAAACG 60.136 52.381 9.46 0.00 0.00 3.60
253 254 0.320374 ACCGGATCTGAGCAAAACGA 59.680 50.000 9.46 0.00 0.00 3.85
254 255 1.002366 CCGGATCTGAGCAAAACGAG 58.998 55.000 2.08 0.00 0.00 4.18
255 256 0.371645 CGGATCTGAGCAAAACGAGC 59.628 55.000 0.00 0.00 0.00 5.03
256 257 1.442769 GGATCTGAGCAAAACGAGCA 58.557 50.000 0.00 0.00 0.00 4.26
257 258 1.806542 GGATCTGAGCAAAACGAGCAA 59.193 47.619 0.00 0.00 0.00 3.91
258 259 2.413371 GGATCTGAGCAAAACGAGCAAC 60.413 50.000 0.00 0.00 0.00 4.17
259 260 0.944386 TCTGAGCAAAACGAGCAACC 59.056 50.000 0.00 0.00 0.00 3.77
260 261 0.662619 CTGAGCAAAACGAGCAACCA 59.337 50.000 0.00 0.00 0.00 3.67
261 262 1.267806 CTGAGCAAAACGAGCAACCAT 59.732 47.619 0.00 0.00 0.00 3.55
262 263 1.266718 TGAGCAAAACGAGCAACCATC 59.733 47.619 0.00 0.00 0.00 3.51
263 264 1.266718 GAGCAAAACGAGCAACCATCA 59.733 47.619 0.00 0.00 0.00 3.07
264 265 1.001378 AGCAAAACGAGCAACCATCAC 60.001 47.619 0.00 0.00 0.00 3.06
265 266 1.930371 GCAAAACGAGCAACCATCACC 60.930 52.381 0.00 0.00 0.00 4.02
266 267 1.608590 CAAAACGAGCAACCATCACCT 59.391 47.619 0.00 0.00 0.00 4.00
267 268 1.523758 AAACGAGCAACCATCACCTC 58.476 50.000 0.00 0.00 0.00 3.85
268 269 0.687354 AACGAGCAACCATCACCTCT 59.313 50.000 0.00 0.00 0.00 3.69
269 270 0.247736 ACGAGCAACCATCACCTCTC 59.752 55.000 0.00 0.00 0.00 3.20
270 271 0.247460 CGAGCAACCATCACCTCTCA 59.753 55.000 0.00 0.00 0.00 3.27
271 272 1.338105 CGAGCAACCATCACCTCTCAA 60.338 52.381 0.00 0.00 0.00 3.02
272 273 2.079925 GAGCAACCATCACCTCTCAAC 58.920 52.381 0.00 0.00 0.00 3.18
273 274 1.168714 GCAACCATCACCTCTCAACC 58.831 55.000 0.00 0.00 0.00 3.77
274 275 1.545428 GCAACCATCACCTCTCAACCA 60.545 52.381 0.00 0.00 0.00 3.67
275 276 2.881403 GCAACCATCACCTCTCAACCAT 60.881 50.000 0.00 0.00 0.00 3.55
276 277 2.751259 CAACCATCACCTCTCAACCATG 59.249 50.000 0.00 0.00 0.00 3.66
277 278 2.269023 ACCATCACCTCTCAACCATGA 58.731 47.619 0.00 0.00 0.00 3.07
278 279 2.644299 ACCATCACCTCTCAACCATGAA 59.356 45.455 0.00 0.00 34.49 2.57
279 280 3.276857 CCATCACCTCTCAACCATGAAG 58.723 50.000 0.00 0.00 34.49 3.02
280 281 3.276857 CATCACCTCTCAACCATGAAGG 58.723 50.000 0.00 0.00 45.67 3.46
303 304 2.969821 ACCTTTGTTGATGGCTACCA 57.030 45.000 0.00 0.00 38.19 3.25
304 305 2.514803 ACCTTTGTTGATGGCTACCAC 58.485 47.619 0.00 0.00 35.80 4.16
305 306 1.818674 CCTTTGTTGATGGCTACCACC 59.181 52.381 0.00 0.00 35.80 4.61
306 307 2.513753 CTTTGTTGATGGCTACCACCA 58.486 47.619 0.00 0.00 45.82 4.17
307 308 1.904287 TTGTTGATGGCTACCACCAC 58.096 50.000 0.00 0.00 44.17 4.16
308 309 0.037590 TGTTGATGGCTACCACCACC 59.962 55.000 0.00 0.00 44.17 4.61
309 310 0.037590 GTTGATGGCTACCACCACCA 59.962 55.000 0.00 0.00 44.17 4.17
310 311 0.037590 TTGATGGCTACCACCACCAC 59.962 55.000 0.00 0.00 44.17 4.16
311 312 1.077716 GATGGCTACCACCACCACC 60.078 63.158 0.00 0.00 44.17 4.61
312 313 2.869503 GATGGCTACCACCACCACCG 62.870 65.000 0.00 0.00 44.17 4.94
314 315 4.323477 GCTACCACCACCACCGCA 62.323 66.667 0.00 0.00 0.00 5.69
315 316 2.428187 CTACCACCACCACCGCAA 59.572 61.111 0.00 0.00 0.00 4.85
316 317 1.964373 CTACCACCACCACCGCAAC 60.964 63.158 0.00 0.00 0.00 4.17
317 318 2.668185 CTACCACCACCACCGCAACA 62.668 60.000 0.00 0.00 0.00 3.33
318 319 2.266816 TACCACCACCACCGCAACAA 62.267 55.000 0.00 0.00 0.00 2.83
319 320 2.411290 CACCACCACCGCAACAAC 59.589 61.111 0.00 0.00 0.00 3.32
320 321 2.118404 CACCACCACCGCAACAACT 61.118 57.895 0.00 0.00 0.00 3.16
321 322 0.816018 CACCACCACCGCAACAACTA 60.816 55.000 0.00 0.00 0.00 2.24
322 323 0.109723 ACCACCACCGCAACAACTAT 59.890 50.000 0.00 0.00 0.00 2.12
323 324 0.521291 CCACCACCGCAACAACTATG 59.479 55.000 0.00 0.00 0.00 2.23
324 325 0.521291 CACCACCGCAACAACTATGG 59.479 55.000 0.00 0.00 0.00 2.74
325 326 1.241315 ACCACCGCAACAACTATGGC 61.241 55.000 0.00 0.00 0.00 4.40
326 327 1.506262 CACCGCAACAACTATGGCC 59.494 57.895 0.00 0.00 0.00 5.36
327 328 0.960364 CACCGCAACAACTATGGCCT 60.960 55.000 3.32 0.00 0.00 5.19
328 329 0.251165 ACCGCAACAACTATGGCCTT 60.251 50.000 3.32 0.00 0.00 4.35
329 330 1.003812 ACCGCAACAACTATGGCCTTA 59.996 47.619 3.32 0.02 0.00 2.69
330 331 1.670811 CCGCAACAACTATGGCCTTAG 59.329 52.381 21.16 21.16 0.00 2.18
331 332 1.064060 CGCAACAACTATGGCCTTAGC 59.936 52.381 22.36 9.73 38.76 3.09
343 344 2.181954 GCCTTAGCCTCCATCTGATG 57.818 55.000 10.71 10.71 0.00 3.07
344 345 1.419387 GCCTTAGCCTCCATCTGATGT 59.581 52.381 15.95 0.34 0.00 3.06
345 346 2.158696 GCCTTAGCCTCCATCTGATGTT 60.159 50.000 15.95 0.25 0.00 2.71
346 347 3.737850 CCTTAGCCTCCATCTGATGTTC 58.262 50.000 15.95 2.95 0.00 3.18
347 348 3.390639 CCTTAGCCTCCATCTGATGTTCT 59.609 47.826 15.95 9.34 0.00 3.01
348 349 4.141528 CCTTAGCCTCCATCTGATGTTCTT 60.142 45.833 15.95 1.50 0.00 2.52
349 350 5.435291 CTTAGCCTCCATCTGATGTTCTTT 58.565 41.667 15.95 2.45 0.00 2.52
350 351 4.313020 AGCCTCCATCTGATGTTCTTTT 57.687 40.909 15.95 0.00 0.00 2.27
351 352 4.670765 AGCCTCCATCTGATGTTCTTTTT 58.329 39.130 15.95 0.00 0.00 1.94
615 617 9.565090 TCATCAGATTGATCCAGTTTATAAAGG 57.435 33.333 0.00 0.00 34.28 3.11
618 620 9.973661 TCAGATTGATCCAGTTTATAAAGGAAA 57.026 29.630 9.55 2.89 33.17 3.13
620 622 9.190317 AGATTGATCCAGTTTATAAAGGAAACC 57.810 33.333 9.55 4.55 37.48 3.27
623 625 5.502089 TCCAGTTTATAAAGGAAACCGGA 57.498 39.130 9.46 0.18 39.80 5.14
625 627 5.005094 CCAGTTTATAAAGGAAACCGGACA 58.995 41.667 9.46 0.00 36.75 4.02
662 664 6.210584 AGAGAGGGTAGAACAAGAAGAGAAAG 59.789 42.308 0.00 0.00 0.00 2.62
678 681 2.031157 AGAAAGAACAAAATGGACGCCG 60.031 45.455 0.00 0.00 0.00 6.46
723 727 2.096248 GACCAAGGACAACACCACAAA 58.904 47.619 0.00 0.00 0.00 2.83
724 728 2.494073 GACCAAGGACAACACCACAAAA 59.506 45.455 0.00 0.00 0.00 2.44
734 738 4.081420 ACAACACCACAAAAAGGCACAATA 60.081 37.500 0.00 0.00 0.00 1.90
773 785 7.121168 GTCATCAAAGGATCACAATACCAAGAA 59.879 37.037 0.00 0.00 0.00 2.52
776 788 9.699410 ATCAAAGGATCACAATACCAAGAATTA 57.301 29.630 0.00 0.00 0.00 1.40
802 816 2.029964 CCTAACGCACCACACCGT 59.970 61.111 0.00 0.00 39.70 4.83
812 826 2.353723 CACACCGTCGTGCGTACA 60.354 61.111 4.09 0.00 44.40 2.90
816 830 0.731514 CACCGTCGTGCGTACAGAAT 60.732 55.000 4.09 0.00 39.32 2.40
831 845 0.392461 AGAATACCACGGCGCAACAT 60.392 50.000 10.83 0.00 0.00 2.71
837 851 1.447838 CACGGCGCAACATAGGAGT 60.448 57.895 10.83 0.00 0.00 3.85
839 853 0.179119 ACGGCGCAACATAGGAGTAC 60.179 55.000 10.83 0.00 0.00 2.73
850 864 5.359194 ACATAGGAGTACCCACAATCAAG 57.641 43.478 3.60 0.00 37.41 3.02
898 912 1.474077 AGCTCCGCCATGAAAATTCAC 59.526 47.619 0.00 0.00 40.49 3.18
904 918 2.664424 CGCCATGAAAATTCACGAACGT 60.664 45.455 0.00 0.00 40.49 3.99
969 983 5.705441 AGATGAATTAAGACAACGCCAAGAA 59.295 36.000 0.00 0.00 0.00 2.52
972 986 5.240623 TGAATTAAGACAACGCCAAGAACAT 59.759 36.000 0.00 0.00 0.00 2.71
1062 1095 0.766131 ACCACCATACCACCGTTGAA 59.234 50.000 0.00 0.00 0.00 2.69
1063 1096 1.353022 ACCACCATACCACCGTTGAAT 59.647 47.619 0.00 0.00 0.00 2.57
1092 1127 1.876497 GCACCATCGCCACCAACATT 61.876 55.000 0.00 0.00 0.00 2.71
1125 1161 2.708861 ACCACCTACACATCAACCAAGA 59.291 45.455 0.00 0.00 0.00 3.02
1126 1162 3.244561 ACCACCTACACATCAACCAAGAG 60.245 47.826 0.00 0.00 0.00 2.85
1147 1183 0.107017 ACCCCAAGATGATGCCTTCG 60.107 55.000 0.00 0.00 0.00 3.79
1170 1207 2.108157 GACCACGACACCAGTGCA 59.892 61.111 0.00 0.00 38.22 4.57
1234 1271 1.472878 TCGAGGTCTCAACTTCCATCG 59.527 52.381 0.00 0.00 0.00 3.84
1258 1295 0.250640 CTGACCAAGCAAGGTGAGCT 60.251 55.000 4.68 0.00 43.38 4.09
1265 1302 2.057137 AGCAAGGTGAGCTTTGAACA 57.943 45.000 0.00 0.00 39.87 3.18
1295 1332 2.115911 GTCGCCACCCAACAACACA 61.116 57.895 0.00 0.00 0.00 3.72
1315 1352 1.672356 CGCAAAGGGGAGAGGTGTG 60.672 63.158 0.00 0.00 0.00 3.82
1326 1363 2.301870 GGAGAGGTGTGGTACATGAACA 59.698 50.000 0.00 0.00 44.52 3.18
1405 1442 2.035155 TCGAAGGAGTGGCCGAGA 59.965 61.111 0.00 0.00 43.43 4.04
1424 1461 2.421775 AGACTAGATGACGCTGACACAG 59.578 50.000 0.00 0.00 34.12 3.66
1441 1478 3.769844 ACACAGGAATCTACCAAGTCGAT 59.230 43.478 0.00 0.00 0.00 3.59
1465 1502 0.684535 TCAGGAAGGAATGCGACACA 59.315 50.000 0.00 0.00 0.00 3.72
1480 1517 2.359354 ACAAAGCACGCCGCCATA 60.359 55.556 0.00 0.00 44.04 2.74
1486 1523 2.494445 CACGCCGCCATAGACTGA 59.506 61.111 0.00 0.00 0.00 3.41
1493 1530 1.464376 CGCCATAGACTGATCCGGGT 61.464 60.000 0.00 0.00 0.00 5.28
1528 1565 2.890766 TTTCCCCTGGTGCCTCGAC 61.891 63.158 0.00 0.00 0.00 4.20
1537 1574 2.920912 TGCCTCGACGGGGAAGTT 60.921 61.111 20.60 0.00 0.00 2.66
1638 1678 1.402787 CCAAGTGAACAAGCCACCTT 58.597 50.000 0.00 0.00 35.23 3.50
1643 1683 0.756294 TGAACAAGCCACCTTCGAGA 59.244 50.000 0.00 0.00 0.00 4.04
1651 1691 1.289066 CACCTTCGAGAAGCACCGA 59.711 57.895 7.30 0.00 37.11 4.69
1695 1735 0.968901 CTCCCGCCACCTACTACACA 60.969 60.000 0.00 0.00 0.00 3.72
1728 1768 2.913578 CCAGCCACCAAGCAGCAA 60.914 61.111 0.00 0.00 34.23 3.91
1733 1773 1.954528 CCACCAAGCAGCAAGTCAG 59.045 57.895 0.00 0.00 0.00 3.51
1734 1774 0.820891 CCACCAAGCAGCAAGTCAGT 60.821 55.000 0.00 0.00 0.00 3.41
1736 1776 1.532868 CACCAAGCAGCAAGTCAGTAC 59.467 52.381 0.00 0.00 0.00 2.73
1748 1788 0.606604 GTCAGTACTTGAGCCGGGAA 59.393 55.000 2.18 0.00 36.21 3.97
1781 1821 2.046023 CCGATGCCCAGCAGAACA 60.046 61.111 0.00 0.00 43.65 3.18
1797 1837 0.663153 AACAAGCAGCGAGTCCAAAC 59.337 50.000 0.00 0.00 0.00 2.93
1806 1846 1.862806 GAGTCCAAACTCGCACAGC 59.137 57.895 0.00 0.00 42.42 4.40
1809 1849 2.594303 CCAAACTCGCACAGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
1830 1870 3.010144 CCCCCAACTGCCATAGCT 58.990 61.111 0.00 0.00 40.80 3.32
1866 1906 2.106683 GGATCAGGTTTGGACGCGG 61.107 63.158 12.47 0.00 0.00 6.46
1939 1979 4.389576 CGCTGCAACCGCCAAGTC 62.390 66.667 0.00 0.00 37.32 3.01
1950 1990 1.571460 GCCAAGTCACGCAACAGAG 59.429 57.895 0.00 0.00 0.00 3.35
1956 1996 3.114616 CACGCAACAGAGGAGCCG 61.115 66.667 0.00 0.00 0.00 5.52
1958 1998 2.048222 CGCAACAGAGGAGCCGAA 60.048 61.111 0.00 0.00 0.00 4.30
1982 2023 4.489771 GCCCACCACCTCCATCCG 62.490 72.222 0.00 0.00 0.00 4.18
1984 2025 4.838152 CCACCACCTCCATCCGCG 62.838 72.222 0.00 0.00 0.00 6.46
1985 2026 4.082523 CACCACCTCCATCCGCGT 62.083 66.667 4.92 0.00 0.00 6.01
2055 2096 4.025401 CAACCGAGCACCCGCAAC 62.025 66.667 0.00 0.00 42.27 4.17
2088 2129 4.341502 GCAACCACGCACCGCAAT 62.342 61.111 0.00 0.00 0.00 3.56
2089 2130 2.428902 CAACCACGCACCGCAATG 60.429 61.111 0.00 0.00 0.00 2.82
2090 2131 4.341502 AACCACGCACCGCAATGC 62.342 61.111 0.00 0.00 42.48 3.56
2101 2142 4.275282 GCAATGCGCATCGAAGAC 57.725 55.556 25.53 5.95 42.51 3.01
2102 2143 1.297893 GCAATGCGCATCGAAGACC 60.298 57.895 25.53 3.38 42.51 3.85
2103 2144 1.980951 GCAATGCGCATCGAAGACCA 61.981 55.000 25.53 0.00 42.51 4.02
2104 2145 0.247814 CAATGCGCATCGAAGACCAC 60.248 55.000 25.53 0.00 42.51 4.16
2105 2146 1.369091 AATGCGCATCGAAGACCACC 61.369 55.000 25.53 0.00 42.51 4.61
2106 2147 2.125512 GCGCATCGAAGACCACCT 60.126 61.111 0.30 0.00 42.51 4.00
2107 2148 2.167861 GCGCATCGAAGACCACCTC 61.168 63.158 0.30 0.00 42.51 3.85
2108 2149 1.519455 CGCATCGAAGACCACCTCC 60.519 63.158 0.00 0.00 42.51 4.30
2109 2150 1.519455 GCATCGAAGACCACCTCCG 60.519 63.158 0.00 0.00 42.51 4.63
2110 2151 1.519455 CATCGAAGACCACCTCCGC 60.519 63.158 0.00 0.00 42.51 5.54
2111 2152 2.722201 ATCGAAGACCACCTCCGCC 61.722 63.158 0.00 0.00 42.51 6.13
2112 2153 4.796231 CGAAGACCACCTCCGCCG 62.796 72.222 0.00 0.00 0.00 6.46
2137 2178 3.826754 CGAGCACGCTGCCCTAGA 61.827 66.667 0.00 0.00 46.52 2.43
2138 2179 2.105930 GAGCACGCTGCCCTAGAG 59.894 66.667 0.00 0.00 46.52 2.43
2139 2180 4.154347 AGCACGCTGCCCTAGAGC 62.154 66.667 6.39 0.00 46.52 4.09
2140 2181 4.154347 GCACGCTGCCCTAGAGCT 62.154 66.667 0.00 0.00 37.42 4.09
2141 2182 2.202851 CACGCTGCCCTAGAGCTG 60.203 66.667 0.00 0.00 34.03 4.24
2142 2183 2.363018 ACGCTGCCCTAGAGCTGA 60.363 61.111 7.32 0.00 34.03 4.26
2143 2184 2.416678 CGCTGCCCTAGAGCTGAG 59.583 66.667 7.32 0.00 34.03 3.35
2144 2185 2.108771 GCTGCCCTAGAGCTGAGC 59.891 66.667 7.32 0.00 33.88 4.26
2145 2186 2.416678 CTGCCCTAGAGCTGAGCG 59.583 66.667 0.00 0.00 33.88 5.03
2146 2187 3.788616 CTGCCCTAGAGCTGAGCGC 62.789 68.421 0.00 0.00 39.57 5.92
2168 2209 4.320456 CAGCAGCCAGTCACCCGT 62.320 66.667 0.00 0.00 0.00 5.28
2169 2210 3.560251 AGCAGCCAGTCACCCGTT 61.560 61.111 0.00 0.00 0.00 4.44
2170 2211 2.214216 AGCAGCCAGTCACCCGTTA 61.214 57.895 0.00 0.00 0.00 3.18
2171 2212 1.741770 GCAGCCAGTCACCCGTTAG 60.742 63.158 0.00 0.00 0.00 2.34
2172 2213 1.671742 CAGCCAGTCACCCGTTAGT 59.328 57.895 0.00 0.00 0.00 2.24
2173 2214 0.034896 CAGCCAGTCACCCGTTAGTT 59.965 55.000 0.00 0.00 0.00 2.24
2174 2215 0.320697 AGCCAGTCACCCGTTAGTTC 59.679 55.000 0.00 0.00 0.00 3.01
2175 2216 0.672711 GCCAGTCACCCGTTAGTTCC 60.673 60.000 0.00 0.00 0.00 3.62
2176 2217 0.036671 CCAGTCACCCGTTAGTTCCC 60.037 60.000 0.00 0.00 0.00 3.97
2177 2218 0.036671 CAGTCACCCGTTAGTTCCCC 60.037 60.000 0.00 0.00 0.00 4.81
2178 2219 0.472352 AGTCACCCGTTAGTTCCCCA 60.472 55.000 0.00 0.00 0.00 4.96
2179 2220 0.616891 GTCACCCGTTAGTTCCCCAT 59.383 55.000 0.00 0.00 0.00 4.00
2180 2221 0.906775 TCACCCGTTAGTTCCCCATC 59.093 55.000 0.00 0.00 0.00 3.51
2181 2222 0.909623 CACCCGTTAGTTCCCCATCT 59.090 55.000 0.00 0.00 0.00 2.90
2182 2223 1.134491 CACCCGTTAGTTCCCCATCTC 60.134 57.143 0.00 0.00 0.00 2.75
2183 2224 0.104304 CCCGTTAGTTCCCCATCTCG 59.896 60.000 0.00 0.00 0.00 4.04
2184 2225 0.529992 CCGTTAGTTCCCCATCTCGC 60.530 60.000 0.00 0.00 0.00 5.03
2185 2226 0.870307 CGTTAGTTCCCCATCTCGCG 60.870 60.000 0.00 0.00 0.00 5.87
2186 2227 0.458669 GTTAGTTCCCCATCTCGCGA 59.541 55.000 9.26 9.26 0.00 5.87
2187 2228 0.744874 TTAGTTCCCCATCTCGCGAG 59.255 55.000 30.03 30.03 0.00 5.03
2188 2229 1.735376 TAGTTCCCCATCTCGCGAGC 61.735 60.000 30.97 14.22 0.00 5.03
2189 2230 3.074369 TTCCCCATCTCGCGAGCA 61.074 61.111 30.97 19.58 0.00 4.26
2190 2231 2.655073 TTCCCCATCTCGCGAGCAA 61.655 57.895 30.97 15.89 0.00 3.91
2191 2232 2.125147 CCCCATCTCGCGAGCAAA 60.125 61.111 30.97 15.08 0.00 3.68
2192 2233 2.464459 CCCCATCTCGCGAGCAAAC 61.464 63.158 30.97 0.00 0.00 2.93
2193 2234 1.741401 CCCATCTCGCGAGCAAACA 60.741 57.895 30.97 14.27 0.00 2.83
2194 2235 1.091771 CCCATCTCGCGAGCAAACAT 61.092 55.000 30.97 16.03 0.00 2.71
2195 2236 0.729116 CCATCTCGCGAGCAAACATT 59.271 50.000 30.97 6.57 0.00 2.71
2196 2237 1.933181 CCATCTCGCGAGCAAACATTA 59.067 47.619 30.97 11.88 0.00 1.90
2197 2238 2.033407 CCATCTCGCGAGCAAACATTAG 60.033 50.000 30.97 8.87 0.00 1.73
2198 2239 0.999406 TCTCGCGAGCAAACATTAGC 59.001 50.000 30.97 0.00 0.00 3.09
2199 2240 0.026803 CTCGCGAGCAAACATTAGCC 59.973 55.000 25.07 0.00 0.00 3.93
2200 2241 1.296867 CGCGAGCAAACATTAGCCG 60.297 57.895 0.00 0.00 0.00 5.52
2201 2242 1.692148 CGCGAGCAAACATTAGCCGA 61.692 55.000 0.00 0.00 0.00 5.54
2202 2243 0.446222 GCGAGCAAACATTAGCCGAA 59.554 50.000 0.00 0.00 0.00 4.30
2203 2244 1.135803 GCGAGCAAACATTAGCCGAAA 60.136 47.619 0.00 0.00 0.00 3.46
2204 2245 2.667171 GCGAGCAAACATTAGCCGAAAA 60.667 45.455 0.00 0.00 0.00 2.29
2205 2246 3.163594 CGAGCAAACATTAGCCGAAAAG 58.836 45.455 0.00 0.00 0.00 2.27
2206 2247 3.120338 CGAGCAAACATTAGCCGAAAAGA 60.120 43.478 0.00 0.00 0.00 2.52
2207 2248 4.406943 GAGCAAACATTAGCCGAAAAGAG 58.593 43.478 0.00 0.00 0.00 2.85
2208 2249 2.917343 GCAAACATTAGCCGAAAAGAGC 59.083 45.455 0.00 0.00 0.00 4.09
2209 2250 3.611530 GCAAACATTAGCCGAAAAGAGCA 60.612 43.478 0.00 0.00 0.00 4.26
2210 2251 4.737054 CAAACATTAGCCGAAAAGAGCAT 58.263 39.130 0.00 0.00 0.00 3.79
2211 2252 4.361451 AACATTAGCCGAAAAGAGCATG 57.639 40.909 0.00 0.00 0.00 4.06
2212 2253 2.098117 ACATTAGCCGAAAAGAGCATGC 59.902 45.455 10.51 10.51 0.00 4.06
2213 2254 1.094785 TTAGCCGAAAAGAGCATGCC 58.905 50.000 15.66 6.03 0.00 4.40
2214 2255 0.748005 TAGCCGAAAAGAGCATGCCC 60.748 55.000 15.66 1.16 0.00 5.36
2215 2256 3.068729 GCCGAAAAGAGCATGCCCC 62.069 63.158 15.66 6.84 0.00 5.80
2216 2257 1.379044 CCGAAAAGAGCATGCCCCT 60.379 57.895 15.66 9.37 0.00 4.79
2217 2258 1.660560 CCGAAAAGAGCATGCCCCTG 61.661 60.000 15.66 0.23 0.00 4.45
2218 2259 0.677731 CGAAAAGAGCATGCCCCTGA 60.678 55.000 15.66 0.00 0.00 3.86
2219 2260 1.549203 GAAAAGAGCATGCCCCTGAA 58.451 50.000 15.66 0.00 0.00 3.02
2220 2261 1.475682 GAAAAGAGCATGCCCCTGAAG 59.524 52.381 15.66 0.00 0.00 3.02
2221 2262 0.324091 AAAGAGCATGCCCCTGAAGG 60.324 55.000 15.66 0.00 0.00 3.46
2222 2263 1.210204 AAGAGCATGCCCCTGAAGGA 61.210 55.000 15.66 0.00 38.24 3.36
2223 2264 1.210204 AGAGCATGCCCCTGAAGGAA 61.210 55.000 15.66 0.00 38.24 3.36
2224 2265 0.323725 GAGCATGCCCCTGAAGGAAA 60.324 55.000 15.66 0.00 38.24 3.13
2225 2266 0.337428 AGCATGCCCCTGAAGGAAAT 59.663 50.000 15.66 0.00 38.24 2.17
2226 2267 1.570501 AGCATGCCCCTGAAGGAAATA 59.429 47.619 15.66 0.00 38.24 1.40
2227 2268 2.178544 AGCATGCCCCTGAAGGAAATAT 59.821 45.455 15.66 0.00 38.24 1.28
2228 2269 2.298163 GCATGCCCCTGAAGGAAATATG 59.702 50.000 6.36 0.00 38.24 1.78
2229 2270 2.071778 TGCCCCTGAAGGAAATATGC 57.928 50.000 0.00 0.00 38.24 3.14
2230 2271 1.332195 GCCCCTGAAGGAAATATGCC 58.668 55.000 0.00 0.00 38.24 4.40
2231 2272 2.001076 CCCCTGAAGGAAATATGCCC 57.999 55.000 0.00 0.00 38.24 5.36
2232 2273 1.500736 CCCCTGAAGGAAATATGCCCT 59.499 52.381 0.00 0.00 38.24 5.19
2233 2274 2.716424 CCCCTGAAGGAAATATGCCCTA 59.284 50.000 0.00 0.00 38.24 3.53
2234 2275 3.245052 CCCCTGAAGGAAATATGCCCTAG 60.245 52.174 0.00 0.00 38.24 3.02
2235 2276 3.652869 CCCTGAAGGAAATATGCCCTAGA 59.347 47.826 0.00 0.00 38.24 2.43
2236 2277 4.263243 CCCTGAAGGAAATATGCCCTAGAG 60.263 50.000 0.00 0.00 38.24 2.43
2237 2278 4.263243 CCTGAAGGAAATATGCCCTAGAGG 60.263 50.000 0.00 0.00 37.39 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.899661 ACAATATGGTTTAGTGTACACATACAT 57.100 29.630 27.06 21.94 43.21 2.29
1 2 9.157104 CACAATATGGTTTAGTGTACACATACA 57.843 33.333 27.06 17.42 39.06 2.29
2 3 8.120465 GCACAATATGGTTTAGTGTACACATAC 58.880 37.037 27.06 19.38 32.99 2.39
3 4 8.044309 AGCACAATATGGTTTAGTGTACACATA 58.956 33.333 27.06 14.93 34.57 2.29
4 5 6.884295 AGCACAATATGGTTTAGTGTACACAT 59.116 34.615 27.06 13.27 34.57 3.21
5 6 6.234920 AGCACAATATGGTTTAGTGTACACA 58.765 36.000 27.06 10.99 34.57 3.72
6 7 6.737254 AGCACAATATGGTTTAGTGTACAC 57.263 37.500 18.56 18.56 34.57 2.90
17 18 3.091545 CTGGTCCAAAGCACAATATGGT 58.908 45.455 0.00 0.00 42.22 3.55
18 19 3.355378 TCTGGTCCAAAGCACAATATGG 58.645 45.455 0.00 0.00 0.00 2.74
19 20 5.105635 ACAATCTGGTCCAAAGCACAATATG 60.106 40.000 0.00 0.00 0.00 1.78
20 21 5.018809 ACAATCTGGTCCAAAGCACAATAT 58.981 37.500 0.00 0.00 0.00 1.28
21 22 4.406456 ACAATCTGGTCCAAAGCACAATA 58.594 39.130 0.00 0.00 0.00 1.90
22 23 3.233507 ACAATCTGGTCCAAAGCACAAT 58.766 40.909 0.00 0.00 0.00 2.71
23 24 2.665165 ACAATCTGGTCCAAAGCACAA 58.335 42.857 0.00 0.00 0.00 3.33
24 25 2.363306 ACAATCTGGTCCAAAGCACA 57.637 45.000 0.00 0.00 0.00 4.57
25 26 3.568007 TGTTACAATCTGGTCCAAAGCAC 59.432 43.478 0.00 0.00 0.00 4.40
26 27 3.826524 TGTTACAATCTGGTCCAAAGCA 58.173 40.909 0.00 0.00 0.00 3.91
27 28 4.218417 ACATGTTACAATCTGGTCCAAAGC 59.782 41.667 0.00 0.00 0.00 3.51
28 29 5.335897 CCACATGTTACAATCTGGTCCAAAG 60.336 44.000 0.00 0.00 0.00 2.77
29 30 4.522405 CCACATGTTACAATCTGGTCCAAA 59.478 41.667 0.00 0.00 0.00 3.28
30 31 4.078537 CCACATGTTACAATCTGGTCCAA 58.921 43.478 0.00 0.00 0.00 3.53
31 32 3.561097 CCCACATGTTACAATCTGGTCCA 60.561 47.826 0.00 0.00 0.00 4.02
32 33 3.016736 CCCACATGTTACAATCTGGTCC 58.983 50.000 0.00 0.00 0.00 4.46
33 34 3.950397 TCCCACATGTTACAATCTGGTC 58.050 45.455 0.00 0.00 0.00 4.02
34 35 4.380843 TTCCCACATGTTACAATCTGGT 57.619 40.909 0.00 0.00 0.00 4.00
35 36 6.122277 AGTATTCCCACATGTTACAATCTGG 58.878 40.000 0.00 0.00 0.00 3.86
36 37 7.630242 AAGTATTCCCACATGTTACAATCTG 57.370 36.000 0.00 0.00 0.00 2.90
37 38 8.522830 CAAAAGTATTCCCACATGTTACAATCT 58.477 33.333 0.00 0.00 0.00 2.40
38 39 7.759433 CCAAAAGTATTCCCACATGTTACAATC 59.241 37.037 0.00 0.00 0.00 2.67
39 40 7.310361 CCCAAAAGTATTCCCACATGTTACAAT 60.310 37.037 0.00 0.00 0.00 2.71
40 41 6.015010 CCCAAAAGTATTCCCACATGTTACAA 60.015 38.462 0.00 0.00 0.00 2.41
41 42 5.478679 CCCAAAAGTATTCCCACATGTTACA 59.521 40.000 0.00 0.00 0.00 2.41
42 43 5.623596 GCCCAAAAGTATTCCCACATGTTAC 60.624 44.000 0.00 0.00 0.00 2.50
43 44 4.464597 GCCCAAAAGTATTCCCACATGTTA 59.535 41.667 0.00 0.00 0.00 2.41
44 45 3.260632 GCCCAAAAGTATTCCCACATGTT 59.739 43.478 0.00 0.00 0.00 2.71
45 46 2.831526 GCCCAAAAGTATTCCCACATGT 59.168 45.455 0.00 0.00 0.00 3.21
46 47 2.830923 TGCCCAAAAGTATTCCCACATG 59.169 45.455 0.00 0.00 0.00 3.21
47 48 3.182887 TGCCCAAAAGTATTCCCACAT 57.817 42.857 0.00 0.00 0.00 3.21
48 49 2.685106 TGCCCAAAAGTATTCCCACA 57.315 45.000 0.00 0.00 0.00 4.17
49 50 5.669164 TTATTGCCCAAAAGTATTCCCAC 57.331 39.130 0.00 0.00 0.00 4.61
50 51 5.782845 ACTTTATTGCCCAAAAGTATTCCCA 59.217 36.000 5.81 0.00 42.57 4.37
51 52 6.071051 TCACTTTATTGCCCAAAAGTATTCCC 60.071 38.462 6.98 0.00 42.52 3.97
52 53 6.930731 TCACTTTATTGCCCAAAAGTATTCC 58.069 36.000 6.98 0.00 42.52 3.01
53 54 8.825667 TTTCACTTTATTGCCCAAAAGTATTC 57.174 30.769 6.98 0.00 42.52 1.75
54 55 9.620259 TTTTTCACTTTATTGCCCAAAAGTATT 57.380 25.926 6.98 0.00 42.52 1.89
55 56 9.271828 CTTTTTCACTTTATTGCCCAAAAGTAT 57.728 29.630 6.98 0.00 42.52 2.12
56 57 7.713073 CCTTTTTCACTTTATTGCCCAAAAGTA 59.287 33.333 6.98 0.00 42.52 2.24
57 58 6.542005 CCTTTTTCACTTTATTGCCCAAAAGT 59.458 34.615 0.00 2.55 44.62 2.66
58 59 6.017192 CCCTTTTTCACTTTATTGCCCAAAAG 60.017 38.462 0.00 0.00 38.41 2.27
59 60 5.825151 CCCTTTTTCACTTTATTGCCCAAAA 59.175 36.000 0.00 0.00 0.00 2.44
60 61 5.372373 CCCTTTTTCACTTTATTGCCCAAA 58.628 37.500 0.00 0.00 0.00 3.28
61 62 4.202409 CCCCTTTTTCACTTTATTGCCCAA 60.202 41.667 0.00 0.00 0.00 4.12
62 63 3.326297 CCCCTTTTTCACTTTATTGCCCA 59.674 43.478 0.00 0.00 0.00 5.36
63 64 3.326588 ACCCCTTTTTCACTTTATTGCCC 59.673 43.478 0.00 0.00 0.00 5.36
64 65 4.314961 CACCCCTTTTTCACTTTATTGCC 58.685 43.478 0.00 0.00 0.00 4.52
65 66 3.745975 GCACCCCTTTTTCACTTTATTGC 59.254 43.478 0.00 0.00 0.00 3.56
66 67 4.954875 TGCACCCCTTTTTCACTTTATTG 58.045 39.130 0.00 0.00 0.00 1.90
67 68 5.104735 TGTTGCACCCCTTTTTCACTTTATT 60.105 36.000 0.00 0.00 0.00 1.40
68 69 4.407296 TGTTGCACCCCTTTTTCACTTTAT 59.593 37.500 0.00 0.00 0.00 1.40
69 70 3.769844 TGTTGCACCCCTTTTTCACTTTA 59.230 39.130 0.00 0.00 0.00 1.85
70 71 2.569404 TGTTGCACCCCTTTTTCACTTT 59.431 40.909 0.00 0.00 0.00 2.66
71 72 2.183679 TGTTGCACCCCTTTTTCACTT 58.816 42.857 0.00 0.00 0.00 3.16
72 73 1.859302 TGTTGCACCCCTTTTTCACT 58.141 45.000 0.00 0.00 0.00 3.41
73 74 2.482864 CATGTTGCACCCCTTTTTCAC 58.517 47.619 0.00 0.00 0.00 3.18
74 75 1.202627 GCATGTTGCACCCCTTTTTCA 60.203 47.619 0.00 0.00 44.26 2.69
75 76 1.511850 GCATGTTGCACCCCTTTTTC 58.488 50.000 0.00 0.00 44.26 2.29
76 77 0.249826 CGCATGTTGCACCCCTTTTT 60.250 50.000 0.00 0.00 45.36 1.94
77 78 1.367102 CGCATGTTGCACCCCTTTT 59.633 52.632 0.00 0.00 45.36 2.27
78 79 3.050339 CGCATGTTGCACCCCTTT 58.950 55.556 0.00 0.00 45.36 3.11
79 80 3.683937 GCGCATGTTGCACCCCTT 61.684 61.111 0.30 0.00 45.36 3.95
83 84 4.341502 AACGGCGCATGTTGCACC 62.342 61.111 15.35 0.00 45.36 5.01
84 85 3.098958 CAACGGCGCATGTTGCAC 61.099 61.111 25.22 0.00 45.36 4.57
85 86 4.340019 CCAACGGCGCATGTTGCA 62.340 61.111 28.93 0.00 45.36 4.08
96 97 4.083003 ACACACAAACATTATAGCCAACGG 60.083 41.667 0.00 0.00 0.00 4.44
97 98 4.851014 CACACACAAACATTATAGCCAACG 59.149 41.667 0.00 0.00 0.00 4.10
98 99 4.621034 GCACACACAAACATTATAGCCAAC 59.379 41.667 0.00 0.00 0.00 3.77
99 100 4.279420 TGCACACACAAACATTATAGCCAA 59.721 37.500 0.00 0.00 0.00 4.52
100 101 3.823304 TGCACACACAAACATTATAGCCA 59.177 39.130 0.00 0.00 0.00 4.75
101 102 4.433186 TGCACACACAAACATTATAGCC 57.567 40.909 0.00 0.00 0.00 3.93
102 103 5.286797 CACATGCACACACAAACATTATAGC 59.713 40.000 0.00 0.00 0.00 2.97
103 104 6.380995 ACACATGCACACACAAACATTATAG 58.619 36.000 0.00 0.00 0.00 1.31
104 105 6.324561 ACACATGCACACACAAACATTATA 57.675 33.333 0.00 0.00 0.00 0.98
105 106 5.199024 ACACATGCACACACAAACATTAT 57.801 34.783 0.00 0.00 0.00 1.28
106 107 4.645762 ACACATGCACACACAAACATTA 57.354 36.364 0.00 0.00 0.00 1.90
107 108 3.523606 ACACATGCACACACAAACATT 57.476 38.095 0.00 0.00 0.00 2.71
108 109 3.523606 AACACATGCACACACAAACAT 57.476 38.095 0.00 0.00 0.00 2.71
109 110 2.991866 CAAACACATGCACACACAAACA 59.008 40.909 0.00 0.00 0.00 2.83
110 111 2.992543 ACAAACACATGCACACACAAAC 59.007 40.909 0.00 0.00 0.00 2.93
111 112 3.309961 ACAAACACATGCACACACAAA 57.690 38.095 0.00 0.00 0.00 2.83
112 113 3.309961 AACAAACACATGCACACACAA 57.690 38.095 0.00 0.00 0.00 3.33
113 114 4.337836 AGATAACAAACACATGCACACACA 59.662 37.500 0.00 0.00 0.00 3.72
114 115 4.858935 AGATAACAAACACATGCACACAC 58.141 39.130 0.00 0.00 0.00 3.82
115 116 5.512753 AAGATAACAAACACATGCACACA 57.487 34.783 0.00 0.00 0.00 3.72
116 117 5.976534 TCAAAGATAACAAACACATGCACAC 59.023 36.000 0.00 0.00 0.00 3.82
117 118 6.141560 TCAAAGATAACAAACACATGCACA 57.858 33.333 0.00 0.00 0.00 4.57
118 119 6.642131 ACATCAAAGATAACAAACACATGCAC 59.358 34.615 0.00 0.00 0.00 4.57
119 120 6.641723 CACATCAAAGATAACAAACACATGCA 59.358 34.615 0.00 0.00 0.00 3.96
120 121 6.862608 TCACATCAAAGATAACAAACACATGC 59.137 34.615 0.00 0.00 0.00 4.06
121 122 8.975410 ATCACATCAAAGATAACAAACACATG 57.025 30.769 0.00 0.00 0.00 3.21
122 123 8.795513 TGATCACATCAAAGATAACAAACACAT 58.204 29.630 0.00 0.00 36.11 3.21
123 124 8.164058 TGATCACATCAAAGATAACAAACACA 57.836 30.769 0.00 0.00 36.11 3.72
138 139 5.814481 TCTGGTGGTTTATTGATCACATCA 58.186 37.500 0.00 0.00 37.55 3.07
139 140 6.115446 TCTCTGGTGGTTTATTGATCACATC 58.885 40.000 0.00 0.00 32.29 3.06
140 141 6.065976 TCTCTGGTGGTTTATTGATCACAT 57.934 37.500 0.00 0.00 32.29 3.21
141 142 5.497464 TCTCTGGTGGTTTATTGATCACA 57.503 39.130 0.00 0.00 32.29 3.58
142 143 6.708054 CCTATCTCTGGTGGTTTATTGATCAC 59.292 42.308 0.00 0.00 0.00 3.06
143 144 6.183361 CCCTATCTCTGGTGGTTTATTGATCA 60.183 42.308 0.00 0.00 0.00 2.92
144 145 6.183361 ACCCTATCTCTGGTGGTTTATTGATC 60.183 42.308 0.00 0.00 32.36 2.92
145 146 5.672194 ACCCTATCTCTGGTGGTTTATTGAT 59.328 40.000 0.00 0.00 32.36 2.57
146 147 5.036916 ACCCTATCTCTGGTGGTTTATTGA 58.963 41.667 0.00 0.00 32.36 2.57
147 148 5.104527 TGACCCTATCTCTGGTGGTTTATTG 60.105 44.000 0.00 0.00 34.20 1.90
148 149 5.036916 TGACCCTATCTCTGGTGGTTTATT 58.963 41.667 0.00 0.00 34.20 1.40
149 150 4.631234 TGACCCTATCTCTGGTGGTTTAT 58.369 43.478 0.00 0.00 34.20 1.40
150 151 4.069312 TGACCCTATCTCTGGTGGTTTA 57.931 45.455 0.00 0.00 34.20 2.01
151 152 2.915869 TGACCCTATCTCTGGTGGTTT 58.084 47.619 0.00 0.00 34.20 3.27
152 153 2.642171 TGACCCTATCTCTGGTGGTT 57.358 50.000 0.00 0.00 34.20 3.67
153 154 2.572104 GTTTGACCCTATCTCTGGTGGT 59.428 50.000 0.00 0.00 34.20 4.16
154 155 2.840651 AGTTTGACCCTATCTCTGGTGG 59.159 50.000 0.00 0.00 34.20 4.61
155 156 3.866651 CAGTTTGACCCTATCTCTGGTG 58.133 50.000 0.00 0.00 34.20 4.17
156 157 2.237392 GCAGTTTGACCCTATCTCTGGT 59.763 50.000 0.00 0.00 37.64 4.00
157 158 2.503356 AGCAGTTTGACCCTATCTCTGG 59.497 50.000 0.00 0.00 0.00 3.86
158 159 3.529533 CAGCAGTTTGACCCTATCTCTG 58.470 50.000 0.00 0.00 0.00 3.35
159 160 2.093235 GCAGCAGTTTGACCCTATCTCT 60.093 50.000 0.00 0.00 0.00 3.10
160 161 2.284190 GCAGCAGTTTGACCCTATCTC 58.716 52.381 0.00 0.00 0.00 2.75
161 162 1.065126 GGCAGCAGTTTGACCCTATCT 60.065 52.381 0.00 0.00 0.00 1.98
162 163 1.340017 TGGCAGCAGTTTGACCCTATC 60.340 52.381 0.00 0.00 0.00 2.08
163 164 0.698238 TGGCAGCAGTTTGACCCTAT 59.302 50.000 0.00 0.00 0.00 2.57
164 165 0.476338 TTGGCAGCAGTTTGACCCTA 59.524 50.000 0.00 0.00 0.00 3.53
165 166 1.109323 GTTGGCAGCAGTTTGACCCT 61.109 55.000 0.00 0.00 0.00 4.34
166 167 1.363807 GTTGGCAGCAGTTTGACCC 59.636 57.895 0.00 0.00 0.00 4.46
167 168 1.109323 AGGTTGGCAGCAGTTTGACC 61.109 55.000 3.14 0.00 0.00 4.02
168 169 0.031178 CAGGTTGGCAGCAGTTTGAC 59.969 55.000 3.14 0.00 0.00 3.18
169 170 1.737355 GCAGGTTGGCAGCAGTTTGA 61.737 55.000 3.14 0.00 0.00 2.69
170 171 1.300388 GCAGGTTGGCAGCAGTTTG 60.300 57.895 3.14 0.00 0.00 2.93
171 172 1.757731 TGCAGGTTGGCAGCAGTTT 60.758 52.632 3.14 0.00 39.25 2.66
172 173 2.123769 TGCAGGTTGGCAGCAGTT 60.124 55.556 3.14 0.00 39.25 3.16
178 179 2.594303 CGGTTCTGCAGGTTGGCA 60.594 61.111 15.13 0.00 42.53 4.92
179 180 2.281484 TCGGTTCTGCAGGTTGGC 60.281 61.111 15.13 0.00 0.00 4.52
180 181 2.328099 GCTCGGTTCTGCAGGTTGG 61.328 63.158 15.13 1.55 0.00 3.77
181 182 2.328099 GGCTCGGTTCTGCAGGTTG 61.328 63.158 15.13 1.75 0.00 3.77
182 183 2.032681 GGCTCGGTTCTGCAGGTT 59.967 61.111 15.13 0.00 0.00 3.50
183 184 1.264749 TATGGCTCGGTTCTGCAGGT 61.265 55.000 15.13 0.00 0.00 4.00
184 185 0.107703 TTATGGCTCGGTTCTGCAGG 60.108 55.000 15.13 0.00 0.00 4.85
185 186 1.009829 GTTATGGCTCGGTTCTGCAG 58.990 55.000 7.63 7.63 0.00 4.41
186 187 0.613260 AGTTATGGCTCGGTTCTGCA 59.387 50.000 0.00 0.00 0.00 4.41
187 188 1.291132 GAGTTATGGCTCGGTTCTGC 58.709 55.000 0.00 0.00 0.00 4.26
188 189 1.802880 CGGAGTTATGGCTCGGTTCTG 60.803 57.143 0.00 0.00 36.41 3.02
189 190 0.460311 CGGAGTTATGGCTCGGTTCT 59.540 55.000 0.00 0.00 36.41 3.01
190 191 0.175073 ACGGAGTTATGGCTCGGTTC 59.825 55.000 0.00 0.00 43.44 3.62
191 192 0.108329 CACGGAGTTATGGCTCGGTT 60.108 55.000 8.21 0.00 43.44 4.44
192 193 1.515954 CACGGAGTTATGGCTCGGT 59.484 57.895 0.00 0.00 45.69 4.69
193 194 1.883084 GCACGGAGTTATGGCTCGG 60.883 63.158 0.00 0.00 41.61 4.63
194 195 0.739462 TTGCACGGAGTTATGGCTCG 60.739 55.000 0.00 0.00 41.61 5.03
195 196 1.668419 ATTGCACGGAGTTATGGCTC 58.332 50.000 0.00 0.00 41.61 4.70
196 197 2.170607 ACTATTGCACGGAGTTATGGCT 59.829 45.455 0.00 0.00 41.61 4.75
197 198 2.561569 ACTATTGCACGGAGTTATGGC 58.438 47.619 0.00 0.00 41.61 4.40
198 199 5.179368 CCATTACTATTGCACGGAGTTATGG 59.821 44.000 18.25 18.25 41.61 2.74
199 200 5.758296 ACCATTACTATTGCACGGAGTTATG 59.242 40.000 11.27 11.27 41.61 1.90
200 201 5.758296 CACCATTACTATTGCACGGAGTTAT 59.242 40.000 0.05 0.00 41.61 1.89
201 202 5.113383 CACCATTACTATTGCACGGAGTTA 58.887 41.667 0.05 0.00 41.61 2.24
202 203 3.938963 CACCATTACTATTGCACGGAGTT 59.061 43.478 0.05 0.00 41.61 3.01
204 205 3.531538 ACACCATTACTATTGCACGGAG 58.468 45.455 0.00 0.00 0.00 4.63
205 206 3.620427 ACACCATTACTATTGCACGGA 57.380 42.857 0.00 0.00 0.00 4.69
206 207 4.185394 TGTACACCATTACTATTGCACGG 58.815 43.478 0.00 0.00 0.00 4.94
207 208 5.788055 TTGTACACCATTACTATTGCACG 57.212 39.130 0.00 0.00 0.00 5.34
208 209 6.072397 TGGTTTGTACACCATTACTATTGCAC 60.072 38.462 0.00 0.00 42.27 4.57
209 210 6.004574 TGGTTTGTACACCATTACTATTGCA 58.995 36.000 0.00 0.00 42.27 4.08
210 211 6.503589 TGGTTTGTACACCATTACTATTGC 57.496 37.500 0.00 0.00 42.27 3.56
211 212 7.309920 GGTTGGTTTGTACACCATTACTATTG 58.690 38.462 6.07 0.00 46.60 1.90
212 213 6.149807 CGGTTGGTTTGTACACCATTACTATT 59.850 38.462 6.07 0.00 46.60 1.73
213 214 5.644636 CGGTTGGTTTGTACACCATTACTAT 59.355 40.000 6.07 0.00 46.60 2.12
214 215 4.996122 CGGTTGGTTTGTACACCATTACTA 59.004 41.667 6.07 0.00 46.60 1.82
215 216 3.816523 CGGTTGGTTTGTACACCATTACT 59.183 43.478 6.07 0.00 46.60 2.24
216 217 3.058085 CCGGTTGGTTTGTACACCATTAC 60.058 47.826 6.07 3.08 46.60 1.89
217 218 3.147629 CCGGTTGGTTTGTACACCATTA 58.852 45.455 6.07 0.00 46.60 1.90
218 219 1.957877 CCGGTTGGTTTGTACACCATT 59.042 47.619 6.07 0.00 46.60 3.16
219 220 1.143277 TCCGGTTGGTTTGTACACCAT 59.857 47.619 0.00 0.00 46.60 3.55
220 221 0.545171 TCCGGTTGGTTTGTACACCA 59.455 50.000 0.00 0.00 45.68 4.17
221 222 1.808343 GATCCGGTTGGTTTGTACACC 59.192 52.381 0.00 0.00 37.34 4.16
222 223 2.482721 CAGATCCGGTTGGTTTGTACAC 59.517 50.000 0.00 0.00 36.30 2.90
223 224 2.369203 TCAGATCCGGTTGGTTTGTACA 59.631 45.455 0.00 0.00 36.30 2.90
224 225 3.000727 CTCAGATCCGGTTGGTTTGTAC 58.999 50.000 0.00 0.00 36.30 2.90
225 226 2.614481 GCTCAGATCCGGTTGGTTTGTA 60.614 50.000 0.00 0.00 36.30 2.41
226 227 1.882352 GCTCAGATCCGGTTGGTTTGT 60.882 52.381 0.00 0.00 36.30 2.83
227 228 0.804989 GCTCAGATCCGGTTGGTTTG 59.195 55.000 0.00 0.00 36.30 2.93
228 229 0.400213 TGCTCAGATCCGGTTGGTTT 59.600 50.000 0.00 0.00 36.30 3.27
229 230 0.400213 TTGCTCAGATCCGGTTGGTT 59.600 50.000 0.00 0.00 36.30 3.67
230 231 0.400213 TTTGCTCAGATCCGGTTGGT 59.600 50.000 0.00 0.00 36.30 3.67
231 232 1.200020 GTTTTGCTCAGATCCGGTTGG 59.800 52.381 0.00 0.00 0.00 3.77
232 233 1.135972 CGTTTTGCTCAGATCCGGTTG 60.136 52.381 0.00 0.00 0.00 3.77
233 234 1.156736 CGTTTTGCTCAGATCCGGTT 58.843 50.000 0.00 0.00 0.00 4.44
234 235 0.320374 TCGTTTTGCTCAGATCCGGT 59.680 50.000 0.00 0.00 0.00 5.28
235 236 1.002366 CTCGTTTTGCTCAGATCCGG 58.998 55.000 0.00 0.00 0.00 5.14
236 237 0.371645 GCTCGTTTTGCTCAGATCCG 59.628 55.000 0.00 0.00 0.00 4.18
237 238 1.442769 TGCTCGTTTTGCTCAGATCC 58.557 50.000 0.00 0.00 0.00 3.36
238 239 2.413371 GGTTGCTCGTTTTGCTCAGATC 60.413 50.000 0.00 0.00 0.00 2.75
239 240 1.537202 GGTTGCTCGTTTTGCTCAGAT 59.463 47.619 0.00 0.00 0.00 2.90
240 241 0.944386 GGTTGCTCGTTTTGCTCAGA 59.056 50.000 0.00 0.00 0.00 3.27
241 242 0.662619 TGGTTGCTCGTTTTGCTCAG 59.337 50.000 0.00 0.00 0.00 3.35
242 243 1.266718 GATGGTTGCTCGTTTTGCTCA 59.733 47.619 0.00 0.00 0.00 4.26
243 244 1.266718 TGATGGTTGCTCGTTTTGCTC 59.733 47.619 0.00 0.00 0.00 4.26
244 245 1.001378 GTGATGGTTGCTCGTTTTGCT 60.001 47.619 0.00 0.00 0.00 3.91
245 246 1.408422 GTGATGGTTGCTCGTTTTGC 58.592 50.000 0.00 0.00 0.00 3.68
246 247 1.608590 AGGTGATGGTTGCTCGTTTTG 59.391 47.619 0.00 0.00 0.00 2.44
247 248 1.880027 GAGGTGATGGTTGCTCGTTTT 59.120 47.619 0.00 0.00 0.00 2.43
248 249 1.072331 AGAGGTGATGGTTGCTCGTTT 59.928 47.619 0.00 0.00 0.00 3.60
249 250 0.687354 AGAGGTGATGGTTGCTCGTT 59.313 50.000 0.00 0.00 0.00 3.85
250 251 0.247736 GAGAGGTGATGGTTGCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
251 252 0.247460 TGAGAGGTGATGGTTGCTCG 59.753 55.000 0.00 0.00 0.00 5.03
252 253 2.079925 GTTGAGAGGTGATGGTTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
253 254 1.271597 GGTTGAGAGGTGATGGTTGCT 60.272 52.381 0.00 0.00 0.00 3.91
254 255 1.168714 GGTTGAGAGGTGATGGTTGC 58.831 55.000 0.00 0.00 0.00 4.17
255 256 2.566833 TGGTTGAGAGGTGATGGTTG 57.433 50.000 0.00 0.00 0.00 3.77
256 257 2.644299 TCATGGTTGAGAGGTGATGGTT 59.356 45.455 0.00 0.00 0.00 3.67
257 258 2.269023 TCATGGTTGAGAGGTGATGGT 58.731 47.619 0.00 0.00 0.00 3.55
258 259 3.276857 CTTCATGGTTGAGAGGTGATGG 58.723 50.000 0.00 0.00 32.27 3.51
259 260 3.276857 CCTTCATGGTTGAGAGGTGATG 58.723 50.000 0.00 0.00 32.27 3.07
260 261 3.641434 CCTTCATGGTTGAGAGGTGAT 57.359 47.619 0.00 0.00 32.27 3.06
283 284 2.890945 GTGGTAGCCATCAACAAAGGTT 59.109 45.455 0.00 0.00 35.28 3.50
284 285 2.514803 GTGGTAGCCATCAACAAAGGT 58.485 47.619 0.00 0.00 35.28 3.50
285 286 1.818674 GGTGGTAGCCATCAACAAAGG 59.181 52.381 0.00 0.00 34.21 3.11
286 287 2.513753 TGGTGGTAGCCATCAACAAAG 58.486 47.619 0.00 0.00 42.23 2.77
287 288 2.666272 TGGTGGTAGCCATCAACAAA 57.334 45.000 0.00 0.00 42.23 2.83
292 293 1.682849 GTGGTGGTGGTAGCCATCA 59.317 57.895 0.00 0.00 46.49 3.07
293 294 1.077716 GGTGGTGGTGGTAGCCATC 60.078 63.158 0.00 0.00 41.08 3.51
294 295 2.966732 CGGTGGTGGTGGTAGCCAT 61.967 63.158 0.00 0.00 41.08 4.40
295 296 3.632080 CGGTGGTGGTGGTAGCCA 61.632 66.667 0.00 0.00 35.93 4.75
297 298 3.835790 TTGCGGTGGTGGTGGTAGC 62.836 63.158 0.00 0.00 0.00 3.58
298 299 1.964373 GTTGCGGTGGTGGTGGTAG 60.964 63.158 0.00 0.00 0.00 3.18
299 300 2.111460 GTTGCGGTGGTGGTGGTA 59.889 61.111 0.00 0.00 0.00 3.25
300 301 3.646942 TTGTTGCGGTGGTGGTGGT 62.647 57.895 0.00 0.00 0.00 4.16
301 302 2.830827 TTGTTGCGGTGGTGGTGG 60.831 61.111 0.00 0.00 0.00 4.61
302 303 0.816018 TAGTTGTTGCGGTGGTGGTG 60.816 55.000 0.00 0.00 0.00 4.17
303 304 0.109723 ATAGTTGTTGCGGTGGTGGT 59.890 50.000 0.00 0.00 0.00 4.16
304 305 0.521291 CATAGTTGTTGCGGTGGTGG 59.479 55.000 0.00 0.00 0.00 4.61
305 306 0.521291 CCATAGTTGTTGCGGTGGTG 59.479 55.000 0.00 0.00 0.00 4.17
306 307 1.241315 GCCATAGTTGTTGCGGTGGT 61.241 55.000 0.00 0.00 0.00 4.16
307 308 1.506262 GCCATAGTTGTTGCGGTGG 59.494 57.895 0.00 0.00 0.00 4.61
308 309 0.960364 AGGCCATAGTTGTTGCGGTG 60.960 55.000 5.01 0.00 0.00 4.94
309 310 0.251165 AAGGCCATAGTTGTTGCGGT 60.251 50.000 5.01 0.00 0.00 5.68
310 311 1.670811 CTAAGGCCATAGTTGTTGCGG 59.329 52.381 5.01 0.00 0.00 5.69
311 312 1.064060 GCTAAGGCCATAGTTGTTGCG 59.936 52.381 16.08 0.00 0.00 4.85
312 313 2.851805 GCTAAGGCCATAGTTGTTGC 57.148 50.000 16.08 0.00 0.00 4.17
323 324 3.882822 ACATCAGATGGAGGCTAAGGCC 61.883 54.545 15.13 0.00 46.31 5.19
324 325 1.419387 ACATCAGATGGAGGCTAAGGC 59.581 52.381 15.13 0.00 34.17 4.35
325 326 3.390639 AGAACATCAGATGGAGGCTAAGG 59.609 47.826 15.13 0.00 33.60 2.69
326 327 4.686191 AGAACATCAGATGGAGGCTAAG 57.314 45.455 15.13 0.00 33.60 2.18
327 328 5.441718 AAAGAACATCAGATGGAGGCTAA 57.558 39.130 15.13 0.00 33.60 3.09
328 329 5.441718 AAAAGAACATCAGATGGAGGCTA 57.558 39.130 15.13 0.00 33.60 3.93
329 330 4.313020 AAAAGAACATCAGATGGAGGCT 57.687 40.909 15.13 3.48 33.60 4.58
589 590 9.565090 CCTTTATAAACTGGATCAATCTGATGA 57.435 33.333 0.00 0.00 37.20 2.92
623 625 3.118149 ACCCTCTCTTGTACGGTTTTTGT 60.118 43.478 0.00 0.00 0.00 2.83
625 627 3.851458 ACCCTCTCTTGTACGGTTTTT 57.149 42.857 0.00 0.00 0.00 1.94
662 664 2.629639 ATTCGGCGTCCATTTTGTTC 57.370 45.000 6.85 0.00 0.00 3.18
678 681 3.268023 AGCTAGGTGTGCCTTGTATTC 57.732 47.619 0.00 0.00 44.18 1.75
691 694 3.245658 TGTCCTTGGTCTTCTAGCTAGGT 60.246 47.826 20.58 0.00 45.43 3.08
701 704 1.283613 TGTGGTGTTGTCCTTGGTCTT 59.716 47.619 0.00 0.00 0.00 3.01
723 727 4.665009 TCCCCTCATCTATATTGTGCCTTT 59.335 41.667 0.00 0.00 0.00 3.11
724 728 4.242811 TCCCCTCATCTATATTGTGCCTT 58.757 43.478 0.00 0.00 0.00 4.35
734 738 4.596643 CCTTTGATGACTCCCCTCATCTAT 59.403 45.833 9.87 0.00 44.82 1.98
773 785 2.690326 CGTTAGGCCGCTTGCTAAT 58.310 52.632 0.00 0.00 40.92 1.73
802 816 1.466192 CGTGGTATTCTGTACGCACGA 60.466 52.381 16.75 0.00 40.78 4.35
812 826 0.392461 ATGTTGCGCCGTGGTATTCT 60.392 50.000 4.18 0.00 0.00 2.40
816 830 1.153529 CCTATGTTGCGCCGTGGTA 60.154 57.895 4.18 0.00 0.00 3.25
831 845 4.030913 CTCCTTGATTGTGGGTACTCCTA 58.969 47.826 0.00 0.00 36.20 2.94
837 851 2.976185 TGTCACTCCTTGATTGTGGGTA 59.024 45.455 0.00 0.00 36.32 3.69
839 853 2.566833 TGTCACTCCTTGATTGTGGG 57.433 50.000 0.00 0.00 36.32 4.61
850 864 0.249911 AGGTTCGTGCTTGTCACTCC 60.250 55.000 0.00 0.00 43.46 3.85
898 912 0.515564 CCCAACCTGCTAAACGTTCG 59.484 55.000 0.00 0.00 0.00 3.95
904 918 1.382629 GCCTCCCCAACCTGCTAAA 59.617 57.895 0.00 0.00 0.00 1.85
941 955 5.240623 TGGCGTTGTCTTAATTCATCTTTGT 59.759 36.000 0.00 0.00 0.00 2.83
952 966 4.130857 TCATGTTCTTGGCGTTGTCTTAA 58.869 39.130 0.00 0.00 0.00 1.85
953 967 3.734463 TCATGTTCTTGGCGTTGTCTTA 58.266 40.909 0.00 0.00 0.00 2.10
969 983 2.037136 GGTGCTGCGAGCTTCATGT 61.037 57.895 9.12 0.00 42.97 3.21
972 986 2.666190 GTGGTGCTGCGAGCTTCA 60.666 61.111 9.12 5.29 42.97 3.02
1062 1095 3.832237 GATGGTGCGGCCGGATGAT 62.832 63.158 29.38 19.84 41.21 2.45
1063 1096 4.545706 GATGGTGCGGCCGGATGA 62.546 66.667 29.38 15.50 41.21 2.92
1081 1116 2.568090 CTGCGGAATGTTGGTGGC 59.432 61.111 0.00 0.00 0.00 5.01
1125 1161 0.625683 AGGCATCATCTTGGGGTCCT 60.626 55.000 0.00 0.00 0.00 3.85
1126 1162 0.259938 AAGGCATCATCTTGGGGTCC 59.740 55.000 0.00 0.00 0.00 4.46
1147 1183 0.038159 CTGGTGTCGTGGTCCTTCTC 60.038 60.000 0.00 0.00 0.00 2.87
1170 1207 4.856801 GGTGCGGATGATGGCGGT 62.857 66.667 0.00 0.00 0.00 5.68
1214 1251 1.472878 CGATGGAAGTTGAGACCTCGA 59.527 52.381 0.00 0.00 31.44 4.04
1234 1271 1.808945 CACCTTGCTTGGTCAGATGAC 59.191 52.381 4.33 4.33 44.04 3.06
1258 1295 2.875933 GACCAGACGACCAATGTTCAAA 59.124 45.455 0.00 0.00 0.00 2.69
1265 1302 2.264794 GGCGACCAGACGACCAAT 59.735 61.111 0.00 0.00 35.00 3.16
1295 1332 2.529389 ACCTCTCCCCTTTGCGGT 60.529 61.111 0.00 0.00 0.00 5.68
1315 1352 2.224670 TGGACCACCTTGTTCATGTACC 60.225 50.000 0.00 0.00 37.04 3.34
1326 1363 1.353091 GTTCCTCTCTGGACCACCTT 58.647 55.000 0.00 0.00 46.14 3.50
1350 1387 2.976356 GGAAGTCGGGTTAGCGGT 59.024 61.111 0.00 0.00 0.00 5.68
1405 1442 1.474478 CCTGTGTCAGCGTCATCTAGT 59.526 52.381 0.00 0.00 0.00 2.57
1424 1461 2.103263 AGGCATCGACTTGGTAGATTCC 59.897 50.000 0.00 2.53 33.13 3.01
1465 1502 2.106683 GTCTATGGCGGCGTGCTTT 61.107 57.895 14.90 0.00 45.43 3.51
1480 1517 1.686110 GGTCCACCCGGATCAGTCT 60.686 63.158 0.73 0.00 45.33 3.24
1486 1523 1.131303 TGTTCTTGGTCCACCCGGAT 61.131 55.000 0.73 0.00 45.33 4.18
1493 1530 2.661718 GAAACCCTTGTTCTTGGTCCA 58.338 47.619 0.00 0.00 32.15 4.02
1528 1565 1.343465 ACTGTCACAGTAACTTCCCCG 59.657 52.381 9.30 0.00 43.46 5.73
1537 1574 1.550524 GGAGGCATCACTGTCACAGTA 59.449 52.381 10.98 0.00 43.43 2.74
1638 1678 1.022735 GGTCTATCGGTGCTTCTCGA 58.977 55.000 0.00 0.00 39.79 4.04
1643 1683 1.112113 ATCACGGTCTATCGGTGCTT 58.888 50.000 0.00 0.00 43.83 3.91
1651 1691 2.555199 GAGCAGCAAATCACGGTCTAT 58.445 47.619 0.00 0.00 0.00 1.98
1695 1735 0.960364 CTGGTGGCGGCTATGTGTTT 60.960 55.000 11.43 0.00 0.00 2.83
1728 1768 0.251653 TCCCGGCTCAAGTACTGACT 60.252 55.000 0.00 0.00 37.59 3.41
1733 1773 4.934989 CCTTCCCGGCTCAAGTAC 57.065 61.111 0.00 0.00 0.00 2.73
1773 1813 0.948141 GACTCGCTGCTTGTTCTGCT 60.948 55.000 0.00 0.00 0.00 4.24
1781 1821 2.919971 GAGTTTGGACTCGCTGCTT 58.080 52.632 0.00 0.00 42.60 3.91
1839 1879 0.389948 AAACCTGATCCTCACGCGTC 60.390 55.000 9.86 0.00 0.00 5.19
1872 1912 2.485795 GCGTCGAGCTCCAGATCCT 61.486 63.158 8.47 0.00 44.04 3.24
1922 1962 4.389576 GACTTGGCGGTTGCAGCG 62.390 66.667 0.00 0.00 45.35 5.18
1929 1969 3.276846 GTTGCGTGACTTGGCGGT 61.277 61.111 0.00 0.00 0.00 5.68
1939 1979 3.114616 CGGCTCCTCTGTTGCGTG 61.115 66.667 0.00 0.00 0.00 5.34
1956 1996 4.678743 GTGGTGGGCTGGGGGTTC 62.679 72.222 0.00 0.00 0.00 3.62
2071 2112 4.341502 ATTGCGGTGCGTGGTTGC 62.342 61.111 0.00 0.00 0.00 4.17
2072 2113 2.428902 CATTGCGGTGCGTGGTTG 60.429 61.111 0.00 0.00 0.00 3.77
2073 2114 4.341502 GCATTGCGGTGCGTGGTT 62.342 61.111 0.00 0.00 35.10 3.67
2084 2125 1.297893 GGTCTTCGATGCGCATTGC 60.298 57.895 29.37 16.73 46.70 3.56
2085 2126 0.247814 GTGGTCTTCGATGCGCATTG 60.248 55.000 28.52 28.52 0.00 2.82
2086 2127 1.369091 GGTGGTCTTCGATGCGCATT 61.369 55.000 26.12 8.31 0.00 3.56
2087 2128 1.815421 GGTGGTCTTCGATGCGCAT 60.815 57.895 25.66 25.66 0.00 4.73
2088 2129 2.434185 GGTGGTCTTCGATGCGCA 60.434 61.111 14.96 14.96 0.00 6.09
2089 2130 2.125512 AGGTGGTCTTCGATGCGC 60.126 61.111 0.00 0.00 0.00 6.09
2090 2131 1.519455 GGAGGTGGTCTTCGATGCG 60.519 63.158 0.00 0.00 0.00 4.73
2091 2132 4.522971 GGAGGTGGTCTTCGATGC 57.477 61.111 0.00 0.00 0.00 3.91
2095 2136 4.796231 CGGCGGAGGTGGTCTTCG 62.796 72.222 0.00 0.00 46.96 3.79
2121 2162 2.105930 CTCTAGGGCAGCGTGCTC 59.894 66.667 9.31 5.94 46.33 4.26
2122 2163 4.154347 GCTCTAGGGCAGCGTGCT 62.154 66.667 10.54 0.00 44.28 4.40
2123 2164 4.154347 AGCTCTAGGGCAGCGTGC 62.154 66.667 18.89 1.92 42.14 5.34
2124 2165 2.202851 CAGCTCTAGGGCAGCGTG 60.203 66.667 18.89 1.68 42.14 5.34
2125 2166 2.363018 TCAGCTCTAGGGCAGCGT 60.363 61.111 18.89 0.00 42.14 5.07
2126 2167 2.416678 CTCAGCTCTAGGGCAGCG 59.583 66.667 18.89 0.00 42.14 5.18
2127 2168 2.108771 GCTCAGCTCTAGGGCAGC 59.891 66.667 18.89 14.47 37.12 5.25
2128 2169 2.416678 CGCTCAGCTCTAGGGCAG 59.583 66.667 18.89 9.44 34.17 4.85
2151 2192 2.449031 TAACGGGTGACTGGCTGCTG 62.449 60.000 0.00 0.00 42.76 4.41
2152 2193 2.172483 CTAACGGGTGACTGGCTGCT 62.172 60.000 0.00 0.00 42.76 4.24
2153 2194 1.741770 CTAACGGGTGACTGGCTGC 60.742 63.158 0.00 0.00 42.76 5.25
2154 2195 0.034896 AACTAACGGGTGACTGGCTG 59.965 55.000 0.00 0.00 42.76 4.85
2155 2196 0.320697 GAACTAACGGGTGACTGGCT 59.679 55.000 0.00 0.00 42.76 4.75
2156 2197 0.672711 GGAACTAACGGGTGACTGGC 60.673 60.000 0.00 0.00 42.76 4.85
2157 2198 0.036671 GGGAACTAACGGGTGACTGG 60.037 60.000 0.00 0.00 42.76 4.00
2158 2199 0.036671 GGGGAACTAACGGGTGACTG 60.037 60.000 0.00 0.00 44.60 3.51
2159 2200 0.472352 TGGGGAACTAACGGGTGACT 60.472 55.000 0.00 0.00 0.00 3.41
2160 2201 0.616891 ATGGGGAACTAACGGGTGAC 59.383 55.000 0.00 0.00 0.00 3.67
2161 2202 0.906775 GATGGGGAACTAACGGGTGA 59.093 55.000 0.00 0.00 0.00 4.02
2162 2203 0.909623 AGATGGGGAACTAACGGGTG 59.090 55.000 0.00 0.00 0.00 4.61
2163 2204 1.201424 GAGATGGGGAACTAACGGGT 58.799 55.000 0.00 0.00 0.00 5.28
2164 2205 0.104304 CGAGATGGGGAACTAACGGG 59.896 60.000 0.00 0.00 0.00 5.28
2165 2206 0.529992 GCGAGATGGGGAACTAACGG 60.530 60.000 0.00 0.00 0.00 4.44
2166 2207 0.870307 CGCGAGATGGGGAACTAACG 60.870 60.000 0.00 0.00 0.00 3.18
2167 2208 0.458669 TCGCGAGATGGGGAACTAAC 59.541 55.000 3.71 0.00 33.31 2.34
2168 2209 0.744874 CTCGCGAGATGGGGAACTAA 59.255 55.000 32.06 0.00 40.84 2.24
2169 2210 1.735376 GCTCGCGAGATGGGGAACTA 61.735 60.000 38.74 0.00 40.84 2.24
2170 2211 3.082579 GCTCGCGAGATGGGGAACT 62.083 63.158 38.74 0.00 40.84 3.01
2171 2212 2.586357 GCTCGCGAGATGGGGAAC 60.586 66.667 38.74 15.08 40.84 3.62
2172 2213 2.178876 TTTGCTCGCGAGATGGGGAA 62.179 55.000 38.74 17.49 40.84 3.97
2173 2214 2.655073 TTTGCTCGCGAGATGGGGA 61.655 57.895 38.74 11.74 40.84 4.81
2174 2215 2.125147 TTTGCTCGCGAGATGGGG 60.125 61.111 38.74 13.63 40.84 4.96
2175 2216 1.091771 ATGTTTGCTCGCGAGATGGG 61.092 55.000 38.74 14.44 40.84 4.00
2176 2217 0.729116 AATGTTTGCTCGCGAGATGG 59.271 50.000 38.74 14.86 40.84 3.51
2177 2218 2.598439 GCTAATGTTTGCTCGCGAGATG 60.598 50.000 38.74 15.27 40.84 2.90
2178 2219 1.594862 GCTAATGTTTGCTCGCGAGAT 59.405 47.619 38.74 20.17 40.84 2.75
2179 2220 0.999406 GCTAATGTTTGCTCGCGAGA 59.001 50.000 38.74 20.88 39.12 4.04
2180 2221 0.026803 GGCTAATGTTTGCTCGCGAG 59.973 55.000 31.37 31.37 0.00 5.03
2181 2222 1.692148 CGGCTAATGTTTGCTCGCGA 61.692 55.000 9.26 9.26 0.00 5.87
2182 2223 1.296867 CGGCTAATGTTTGCTCGCG 60.297 57.895 0.00 0.00 0.00 5.87
2183 2224 0.446222 TTCGGCTAATGTTTGCTCGC 59.554 50.000 0.00 0.00 0.00 5.03
2184 2225 2.892373 TTTCGGCTAATGTTTGCTCG 57.108 45.000 0.00 2.57 0.00 5.03
2185 2226 4.406943 CTCTTTTCGGCTAATGTTTGCTC 58.593 43.478 0.00 0.00 0.00 4.26
2186 2227 3.366374 GCTCTTTTCGGCTAATGTTTGCT 60.366 43.478 0.00 0.00 0.00 3.91
2187 2228 2.917343 GCTCTTTTCGGCTAATGTTTGC 59.083 45.455 0.00 0.00 0.00 3.68
2188 2229 4.159377 TGCTCTTTTCGGCTAATGTTTG 57.841 40.909 0.00 0.00 0.00 2.93
2189 2230 4.737054 CATGCTCTTTTCGGCTAATGTTT 58.263 39.130 0.00 0.00 0.00 2.83
2190 2231 3.428045 GCATGCTCTTTTCGGCTAATGTT 60.428 43.478 11.37 0.00 0.00 2.71
2191 2232 2.098117 GCATGCTCTTTTCGGCTAATGT 59.902 45.455 11.37 0.00 0.00 2.71
2192 2233 2.542411 GGCATGCTCTTTTCGGCTAATG 60.542 50.000 18.92 0.00 0.00 1.90
2193 2234 1.678101 GGCATGCTCTTTTCGGCTAAT 59.322 47.619 18.92 0.00 0.00 1.73
2194 2235 1.094785 GGCATGCTCTTTTCGGCTAA 58.905 50.000 18.92 0.00 0.00 3.09
2195 2236 0.748005 GGGCATGCTCTTTTCGGCTA 60.748 55.000 18.92 0.00 0.00 3.93
2196 2237 2.048603 GGGCATGCTCTTTTCGGCT 61.049 57.895 18.92 0.00 0.00 5.52
2197 2238 2.491621 GGGCATGCTCTTTTCGGC 59.508 61.111 18.92 0.00 0.00 5.54
2198 2239 1.379044 AGGGGCATGCTCTTTTCGG 60.379 57.895 18.99 0.00 0.00 4.30
2199 2240 0.677731 TCAGGGGCATGCTCTTTTCG 60.678 55.000 18.99 0.00 0.00 3.46
2200 2241 1.475682 CTTCAGGGGCATGCTCTTTTC 59.524 52.381 18.99 0.00 0.00 2.29
2201 2242 1.553706 CTTCAGGGGCATGCTCTTTT 58.446 50.000 18.99 0.22 0.00 2.27
2202 2243 0.324091 CCTTCAGGGGCATGCTCTTT 60.324 55.000 18.99 3.09 0.00 2.52
2203 2244 1.210204 TCCTTCAGGGGCATGCTCTT 61.210 55.000 18.99 7.04 35.41 2.85
2204 2245 1.210204 TTCCTTCAGGGGCATGCTCT 61.210 55.000 18.99 12.66 35.41 4.09
2205 2246 0.323725 TTTCCTTCAGGGGCATGCTC 60.324 55.000 18.92 14.75 35.41 4.26
2206 2247 0.337428 ATTTCCTTCAGGGGCATGCT 59.663 50.000 18.92 0.00 35.41 3.79
2207 2248 2.071778 TATTTCCTTCAGGGGCATGC 57.928 50.000 9.90 9.90 35.41 4.06
2208 2249 2.298163 GCATATTTCCTTCAGGGGCATG 59.702 50.000 0.00 0.00 35.41 4.06
2209 2250 2.601905 GCATATTTCCTTCAGGGGCAT 58.398 47.619 0.00 0.00 35.41 4.40
2210 2251 1.411501 GGCATATTTCCTTCAGGGGCA 60.412 52.381 0.00 0.00 35.41 5.36
2211 2252 1.332195 GGCATATTTCCTTCAGGGGC 58.668 55.000 0.00 0.00 35.41 5.80
2212 2253 1.500736 AGGGCATATTTCCTTCAGGGG 59.499 52.381 0.00 0.00 35.41 4.79
2213 2254 3.652869 TCTAGGGCATATTTCCTTCAGGG 59.347 47.826 0.00 0.00 34.75 4.45
2214 2255 4.263243 CCTCTAGGGCATATTTCCTTCAGG 60.263 50.000 0.00 2.64 34.75 3.86
2215 2256 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
2216 2257 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.