Multiple sequence alignment - TraesCS7A01G540600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G540600 chr7A 100.000 3851 0 0 1 3851 717409091 717405241 0.000000e+00 7112.0
1 TraesCS7A01G540600 chr7A 98.407 565 9 0 2826 3390 280843445 280844009 0.000000e+00 994.0
2 TraesCS7A01G540600 chr7A 89.635 685 68 2 269 950 717173358 717172674 0.000000e+00 869.0
3 TraesCS7A01G540600 chr7A 85.825 776 94 11 1541 2311 717365892 717365128 0.000000e+00 809.0
4 TraesCS7A01G540600 chr7A 86.248 589 65 11 907 1488 717366473 717365894 3.270000e-175 625.0
5 TraesCS7A01G540600 chr7A 84.132 334 51 2 2483 2815 717335119 717334787 4.800000e-84 322.0
6 TraesCS7A01G540600 chr7A 81.944 144 21 3 163 301 717173505 717173362 2.430000e-22 117.0
7 TraesCS7A01G540600 chr7A 85.841 113 12 4 2704 2815 717307114 717307005 2.430000e-22 117.0
8 TraesCS7A01G540600 chr7D 90.886 1953 160 11 625 2568 621970771 621968828 0.000000e+00 2604.0
9 TraesCS7A01G540600 chr7D 84.568 1931 230 41 907 2815 621863663 621861779 0.000000e+00 1853.0
10 TraesCS7A01G540600 chr7D 94.292 473 18 2 168 640 621973625 621973162 0.000000e+00 715.0
11 TraesCS7A01G540600 chr7D 92.157 255 20 0 3136 3390 17224945 17225199 1.020000e-95 361.0
12 TraesCS7A01G540600 chr7D 86.538 260 35 0 2556 2815 621962689 621962430 1.750000e-73 287.0
13 TraesCS7A01G540600 chr7D 91.304 161 12 2 3 163 621973916 621973758 6.480000e-53 219.0
14 TraesCS7A01G540600 chr7D 86.842 114 12 1 107 217 621654280 621654167 1.450000e-24 124.0
15 TraesCS7A01G540600 chr7B 89.901 1723 160 7 168 1884 717982471 717984185 0.000000e+00 2206.0
16 TraesCS7A01G540600 chr7B 88.917 1561 144 12 168 1721 717872465 717874003 0.000000e+00 1897.0
17 TraesCS7A01G540600 chr7B 85.741 1066 138 11 1767 2830 717874005 717875058 0.000000e+00 1114.0
18 TraesCS7A01G540600 chr7B 97.547 530 12 1 2861 3390 649017247 649016719 0.000000e+00 905.0
19 TraesCS7A01G540600 chr7B 85.435 563 82 0 2253 2815 717984691 717985253 1.540000e-163 586.0
20 TraesCS7A01G540600 chr7B 90.164 183 18 0 3664 3846 717875092 717875274 4.970000e-59 239.0
21 TraesCS7A01G540600 chr7B 90.000 160 14 2 3 160 717982176 717982335 5.040000e-49 206.0
22 TraesCS7A01G540600 chr7B 85.638 188 27 0 3664 3851 717985302 717985489 8.440000e-47 198.0
23 TraesCS7A01G540600 chr7B 89.516 124 13 0 3 126 717872422 717872545 1.430000e-34 158.0
24 TraesCS7A01G540600 chr7B 77.447 235 33 5 47 263 717982080 717982312 5.220000e-24 122.0
25 TraesCS7A01G540600 chr7B 93.182 44 3 0 163 206 717872350 717872393 8.930000e-07 65.8
26 TraesCS7A01G540600 chr1B 98.029 558 11 0 2833 3390 484204286 484204843 0.000000e+00 970.0
27 TraesCS7A01G540600 chr1B 85.926 135 14 5 2683 2815 634566825 634566694 5.190000e-29 139.0
28 TraesCS7A01G540600 chr1A 89.483 561 48 10 2831 3390 482151550 482151000 0.000000e+00 699.0
29 TraesCS7A01G540600 chr1A 88.718 585 42 10 2829 3390 50967915 50967332 0.000000e+00 693.0
30 TraesCS7A01G540600 chr5A 89.161 572 38 6 2840 3388 658492183 658491613 0.000000e+00 691.0
31 TraesCS7A01G540600 chr5A 90.775 271 25 0 3124 3394 455867434 455867164 2.830000e-96 363.0
32 TraesCS7A01G540600 chr6A 88.245 587 46 8 2827 3390 617526820 617527406 0.000000e+00 680.0
33 TraesCS7A01G540600 chr2B 88.336 583 44 10 2829 3387 2963533 2964115 0.000000e+00 678.0
34 TraesCS7A01G540600 chr4D 87.884 586 45 9 2831 3390 276900881 276900296 0.000000e+00 665.0
35 TraesCS7A01G540600 chr2A 87.307 583 51 8 2831 3390 105413765 105413183 0.000000e+00 645.0
36 TraesCS7A01G540600 chrUn 82.857 175 24 6 2660 2831 218148677 218148506 6.660000e-33 152.0
37 TraesCS7A01G540600 chrUn 82.857 175 24 6 2660 2831 246429692 246429863 6.660000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G540600 chr7A 717405241 717409091 3850 True 7112.000000 7112 100.000000 1 3851 1 chr7A.!!$R3 3850
1 TraesCS7A01G540600 chr7A 280843445 280844009 564 False 994.000000 994 98.407000 2826 3390 1 chr7A.!!$F1 564
2 TraesCS7A01G540600 chr7A 717365128 717366473 1345 True 717.000000 809 86.036500 907 2311 2 chr7A.!!$R5 1404
3 TraesCS7A01G540600 chr7A 717172674 717173505 831 True 493.000000 869 85.789500 163 950 2 chr7A.!!$R4 787
4 TraesCS7A01G540600 chr7D 621861779 621863663 1884 True 1853.000000 1853 84.568000 907 2815 1 chr7D.!!$R2 1908
5 TraesCS7A01G540600 chr7D 621968828 621973916 5088 True 1179.333333 2604 92.160667 3 2568 3 chr7D.!!$R4 2565
6 TraesCS7A01G540600 chr7B 649016719 649017247 528 True 905.000000 905 97.547000 2861 3390 1 chr7B.!!$R1 529
7 TraesCS7A01G540600 chr7B 717872350 717875274 2924 False 694.760000 1897 89.504000 3 3846 5 chr7B.!!$F1 3843
8 TraesCS7A01G540600 chr7B 717982080 717985489 3409 False 663.600000 2206 85.684200 3 3851 5 chr7B.!!$F2 3848
9 TraesCS7A01G540600 chr1B 484204286 484204843 557 False 970.000000 970 98.029000 2833 3390 1 chr1B.!!$F1 557
10 TraesCS7A01G540600 chr1A 482151000 482151550 550 True 699.000000 699 89.483000 2831 3390 1 chr1A.!!$R2 559
11 TraesCS7A01G540600 chr1A 50967332 50967915 583 True 693.000000 693 88.718000 2829 3390 1 chr1A.!!$R1 561
12 TraesCS7A01G540600 chr5A 658491613 658492183 570 True 691.000000 691 89.161000 2840 3388 1 chr5A.!!$R2 548
13 TraesCS7A01G540600 chr6A 617526820 617527406 586 False 680.000000 680 88.245000 2827 3390 1 chr6A.!!$F1 563
14 TraesCS7A01G540600 chr2B 2963533 2964115 582 False 678.000000 678 88.336000 2829 3387 1 chr2B.!!$F1 558
15 TraesCS7A01G540600 chr4D 276900296 276900881 585 True 665.000000 665 87.884000 2831 3390 1 chr4D.!!$R1 559
16 TraesCS7A01G540600 chr2A 105413183 105413765 582 True 645.000000 645 87.307000 2831 3390 1 chr2A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 333 0.463654 TGGACACCACACAACTCTGC 60.464 55.0 0.00 0.0 0.0 4.26 F
97 334 0.463654 GGACACCACACAACTCTGCA 60.464 55.0 0.00 0.0 0.0 4.41 F
498 794 0.665835 GAGCTCGATCGACAGACCAT 59.334 55.0 15.15 0.0 0.0 3.55 F
2196 5025 0.323725 ATGTGGATTGTCAGGGTGCC 60.324 55.0 0.00 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 4505 0.036732 TGCGGATGAAACCTTCAGCT 59.963 50.0 4.8 0.0 45.0 4.24 R
2055 4879 1.699656 CTGTGCCTTCATTCGCTCCG 61.700 60.0 0.0 0.0 0.0 4.63 R
2297 5159 0.466372 GTCCCCAATTAGAGCTGGCC 60.466 60.0 0.0 0.0 0.0 5.36 R
3646 6598 0.040204 AGGGGGCTGTTTGGATTGAG 59.960 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 305 5.163774 GCTGAATTTTCTGCACTAGAAGAGG 60.164 44.000 14.85 0.00 45.66 3.69
80 317 4.956700 CACTAGAAGAGGTAAGACCATGGA 59.043 45.833 21.47 0.00 41.95 3.41
84 321 2.188817 AGAGGTAAGACCATGGACACC 58.811 52.381 21.47 16.64 41.95 4.16
86 323 1.628846 AGGTAAGACCATGGACACCAC 59.371 52.381 21.47 11.13 41.95 4.16
87 324 1.349688 GGTAAGACCATGGACACCACA 59.650 52.381 21.47 0.00 38.42 4.17
88 325 2.423577 GTAAGACCATGGACACCACAC 58.576 52.381 21.47 3.52 35.80 3.82
89 326 0.843309 AAGACCATGGACACCACACA 59.157 50.000 21.47 0.00 35.80 3.72
90 327 0.843309 AGACCATGGACACCACACAA 59.157 50.000 21.47 0.00 35.80 3.33
91 328 0.951558 GACCATGGACACCACACAAC 59.048 55.000 21.47 0.00 35.80 3.32
92 329 0.550914 ACCATGGACACCACACAACT 59.449 50.000 21.47 0.00 35.80 3.16
93 330 1.238439 CCATGGACACCACACAACTC 58.762 55.000 5.56 0.00 35.80 3.01
94 331 1.202806 CCATGGACACCACACAACTCT 60.203 52.381 5.56 0.00 35.80 3.24
95 332 1.875514 CATGGACACCACACAACTCTG 59.124 52.381 0.00 0.00 35.80 3.35
96 333 0.463654 TGGACACCACACAACTCTGC 60.464 55.000 0.00 0.00 0.00 4.26
97 334 0.463654 GGACACCACACAACTCTGCA 60.464 55.000 0.00 0.00 0.00 4.41
98 335 1.597742 GACACCACACAACTCTGCAT 58.402 50.000 0.00 0.00 0.00 3.96
99 336 1.949525 GACACCACACAACTCTGCATT 59.050 47.619 0.00 0.00 0.00 3.56
100 337 2.358898 GACACCACACAACTCTGCATTT 59.641 45.455 0.00 0.00 0.00 2.32
101 338 2.760092 ACACCACACAACTCTGCATTTT 59.240 40.909 0.00 0.00 0.00 1.82
102 339 3.951037 ACACCACACAACTCTGCATTTTA 59.049 39.130 0.00 0.00 0.00 1.52
103 340 4.202010 ACACCACACAACTCTGCATTTTAC 60.202 41.667 0.00 0.00 0.00 2.01
104 341 4.036734 CACCACACAACTCTGCATTTTACT 59.963 41.667 0.00 0.00 0.00 2.24
105 342 5.238432 CACCACACAACTCTGCATTTTACTA 59.762 40.000 0.00 0.00 0.00 1.82
106 343 6.003950 ACCACACAACTCTGCATTTTACTAT 58.996 36.000 0.00 0.00 0.00 2.12
107 344 6.072508 ACCACACAACTCTGCATTTTACTATG 60.073 38.462 0.00 0.00 0.00 2.23
108 345 6.072508 CCACACAACTCTGCATTTTACTATGT 60.073 38.462 0.00 0.00 0.00 2.29
109 346 7.362662 CACACAACTCTGCATTTTACTATGTT 58.637 34.615 0.00 0.00 0.00 2.71
110 347 7.535258 CACACAACTCTGCATTTTACTATGTTC 59.465 37.037 0.00 0.00 0.00 3.18
111 348 7.228507 ACACAACTCTGCATTTTACTATGTTCA 59.771 33.333 0.00 0.00 0.00 3.18
112 349 8.075574 CACAACTCTGCATTTTACTATGTTCAA 58.924 33.333 0.00 0.00 0.00 2.69
113 350 8.076178 ACAACTCTGCATTTTACTATGTTCAAC 58.924 33.333 0.00 0.00 0.00 3.18
114 351 7.145932 ACTCTGCATTTTACTATGTTCAACC 57.854 36.000 0.00 0.00 0.00 3.77
115 352 6.714810 ACTCTGCATTTTACTATGTTCAACCA 59.285 34.615 0.00 0.00 0.00 3.67
116 353 7.094634 ACTCTGCATTTTACTATGTTCAACCAG 60.095 37.037 0.00 0.00 0.00 4.00
117 354 6.150976 TCTGCATTTTACTATGTTCAACCAGG 59.849 38.462 0.00 0.00 0.00 4.45
118 355 6.007076 TGCATTTTACTATGTTCAACCAGGA 58.993 36.000 0.00 0.00 0.00 3.86
119 356 6.491745 TGCATTTTACTATGTTCAACCAGGAA 59.508 34.615 0.00 0.00 0.00 3.36
120 357 7.014711 TGCATTTTACTATGTTCAACCAGGAAA 59.985 33.333 0.00 0.00 0.00 3.13
136 373 4.763793 CCAGGAAAAGAGATCACACACAAT 59.236 41.667 0.00 0.00 0.00 2.71
151 388 4.126437 CACACAATCTCGGCCACATATAA 58.874 43.478 2.24 0.00 0.00 0.98
165 420 7.174946 CGGCCACATATAATAGGAAAACAATCT 59.825 37.037 2.24 0.00 0.00 2.40
217 472 1.827344 CATGGACACCACAGAGCTCTA 59.173 52.381 17.75 0.00 35.80 2.43
376 672 1.078347 GGCCACTTTGATGGGGGAA 59.922 57.895 0.00 0.00 40.43 3.97
393 689 2.143925 GGAAGAGTACACCAAGCACAC 58.856 52.381 0.00 0.00 0.00 3.82
489 785 0.958091 ATGGAAGAGGAGCTCGATCG 59.042 55.000 9.36 9.36 35.36 3.69
498 794 0.665835 GAGCTCGATCGACAGACCAT 59.334 55.000 15.15 0.00 0.00 3.55
550 846 3.684305 CGTTTCACATTGAGGACTGCATA 59.316 43.478 0.00 0.00 0.00 3.14
567 863 2.349249 GCATAGACGACTTCATGCATGC 60.349 50.000 22.25 11.82 42.61 4.06
691 3393 2.082231 CAGCTGAAGACATGGGTCAAG 58.918 52.381 8.42 0.00 46.80 3.02
717 3419 1.795286 GAGTGAGCGTCAGAAAAGGTG 59.205 52.381 0.00 0.00 0.00 4.00
796 3498 2.103143 CTCTACACAGAGGCGGCG 59.897 66.667 0.51 0.51 44.05 6.46
798 3500 2.103143 CTACACAGAGGCGGCGAG 59.897 66.667 12.98 0.00 0.00 5.03
982 3691 1.668751 GACTGCAAGGTTTTCGTGTCA 59.331 47.619 0.00 0.00 39.30 3.58
1027 3737 1.883275 AGCTTCTCGGTAGGATCATCG 59.117 52.381 0.00 0.00 0.00 3.84
1062 3773 2.883888 GCCACAACCAACCCATACTGAT 60.884 50.000 0.00 0.00 0.00 2.90
1107 3818 9.677567 GACAACATCAGAGAATATCTAAGAGAC 57.322 37.037 0.00 0.00 36.10 3.36
1142 3855 8.732746 TTTAGTAACTTCTCAATCCCTATTGC 57.267 34.615 0.00 0.00 41.96 3.56
1145 3858 8.034313 AGTAACTTCTCAATCCCTATTGCATA 57.966 34.615 0.00 0.00 41.96 3.14
1146 3859 8.153550 AGTAACTTCTCAATCCCTATTGCATAG 58.846 37.037 0.00 0.00 41.96 2.23
1147 3860 6.506538 ACTTCTCAATCCCTATTGCATAGT 57.493 37.500 0.00 0.00 41.96 2.12
1148 3861 6.294473 ACTTCTCAATCCCTATTGCATAGTG 58.706 40.000 0.00 0.00 41.96 2.74
1149 3862 4.645535 TCTCAATCCCTATTGCATAGTGC 58.354 43.478 0.00 0.00 45.29 4.40
1156 3873 3.953612 CCCTATTGCATAGTGCCTTTGAA 59.046 43.478 0.00 0.00 44.23 2.69
1168 3885 5.193679 AGTGCCTTTGAAGTTTTACAGTCT 58.806 37.500 0.00 0.00 0.00 3.24
1169 3886 6.354130 AGTGCCTTTGAAGTTTTACAGTCTA 58.646 36.000 0.00 0.00 0.00 2.59
1190 3907 6.590677 GTCTACAATTTGTCCCTTCTACTGTC 59.409 42.308 5.07 0.00 0.00 3.51
1191 3908 5.304686 ACAATTTGTCCCTTCTACTGTCA 57.695 39.130 0.00 0.00 0.00 3.58
1192 3909 5.880901 ACAATTTGTCCCTTCTACTGTCAT 58.119 37.500 0.00 0.00 0.00 3.06
1193 3910 6.306987 ACAATTTGTCCCTTCTACTGTCATT 58.693 36.000 0.00 0.00 0.00 2.57
1194 3911 6.777580 ACAATTTGTCCCTTCTACTGTCATTT 59.222 34.615 0.00 0.00 0.00 2.32
1195 3912 7.287696 ACAATTTGTCCCTTCTACTGTCATTTT 59.712 33.333 0.00 0.00 0.00 1.82
1196 3913 8.792633 CAATTTGTCCCTTCTACTGTCATTTTA 58.207 33.333 0.00 0.00 0.00 1.52
1197 3914 8.934023 ATTTGTCCCTTCTACTGTCATTTTAA 57.066 30.769 0.00 0.00 0.00 1.52
1198 3915 7.979444 TTGTCCCTTCTACTGTCATTTTAAG 57.021 36.000 0.00 0.00 0.00 1.85
1203 3920 9.231297 TCCCTTCTACTGTCATTTTAAGATTTG 57.769 33.333 0.00 0.00 0.00 2.32
1304 4021 1.819753 TGGGAGGAATCAGTATGGGG 58.180 55.000 0.00 0.00 36.16 4.96
1319 4036 5.588648 CAGTATGGGGAATTATTCGTTGTGT 59.411 40.000 0.00 0.00 0.00 3.72
1340 4057 2.432874 TGTTTCCAGAGAACCAACGAGA 59.567 45.455 0.00 0.00 0.00 4.04
1370 4087 5.305585 AGTAATCACAACCACGAGAATTGT 58.694 37.500 0.00 0.00 37.02 2.71
1392 4109 3.007940 TGACAGTAGCTAATGCAACCTGT 59.992 43.478 20.52 14.74 42.21 4.00
1393 4110 3.338249 ACAGTAGCTAATGCAACCTGTG 58.662 45.455 20.52 0.00 39.96 3.66
1408 4125 1.683385 CCTGTGACTATCGGCATGAGA 59.317 52.381 0.00 0.00 0.00 3.27
1423 4140 5.237996 CGGCATGAGATCATTTACAAGATGT 59.762 40.000 0.00 0.00 33.61 3.06
1548 4265 1.754745 TGGTCTCCCACTTGCTGTC 59.245 57.895 0.00 0.00 35.17 3.51
1572 4289 3.932710 TCAGTATTGCTAGTCTTTTGGCG 59.067 43.478 0.00 0.00 0.00 5.69
1666 4386 3.659183 CAACTTTGGAGGGGATGAGAT 57.341 47.619 0.00 0.00 0.00 2.75
1667 4387 3.285484 CAACTTTGGAGGGGATGAGATG 58.715 50.000 0.00 0.00 0.00 2.90
1669 4389 2.130193 CTTTGGAGGGGATGAGATGGA 58.870 52.381 0.00 0.00 0.00 3.41
1683 4403 6.495181 GGATGAGATGGATACTGAACCTTAGA 59.505 42.308 0.00 0.00 37.61 2.10
1721 4441 3.414549 TCGTCTCAAAACTTGTTTGCC 57.585 42.857 0.00 0.00 0.00 4.52
1727 4447 6.523201 CGTCTCAAAACTTGTTTGCCATATAC 59.477 38.462 0.00 0.00 0.00 1.47
1753 4473 5.065914 CCATGTACCCAGAGGATTACATTG 58.934 45.833 7.25 2.85 32.87 2.82
1785 4505 4.853468 TGATCTTGTTAGGCAATGGGTA 57.147 40.909 0.00 0.00 36.36 3.69
1815 4535 4.381505 GGTTTCATCCGCAAAATACATGGT 60.382 41.667 0.00 0.00 0.00 3.55
1905 4729 7.505585 CCTACAAATATTGGGTACAATGGACAT 59.494 37.037 0.00 0.00 46.37 3.06
1908 4732 7.180051 ACAAATATTGGGTACAATGGACATGTT 59.820 33.333 0.00 0.00 46.37 2.71
1914 4738 8.830915 TTGGGTACAATGGACATGTTATAAAT 57.169 30.769 0.00 0.00 32.27 1.40
2037 4861 2.048127 AGCAAGGTTCGCCGACTC 60.048 61.111 0.00 0.00 43.66 3.36
2055 4879 4.678309 CGACTCTCCCTTCAGTTGGATTAC 60.678 50.000 0.00 0.00 0.00 1.89
2079 4903 2.009774 GCGAATGAAGGCACAGTACAT 58.990 47.619 0.00 0.00 0.00 2.29
2131 4960 4.536765 TCTTGCTCTTTTTGGGAAGTCTT 58.463 39.130 0.00 0.00 33.62 3.01
2196 5025 0.323725 ATGTGGATTGTCAGGGTGCC 60.324 55.000 0.00 0.00 0.00 5.01
2197 5026 1.074775 GTGGATTGTCAGGGTGCCA 59.925 57.895 0.00 0.00 0.00 4.92
2231 5060 4.487714 GGATTGACCTCACACCAATCTA 57.512 45.455 0.00 0.00 43.26 1.98
2297 5159 6.055588 AGGAACATATGTCAACCCTTATTCG 58.944 40.000 9.23 0.00 0.00 3.34
2304 5166 0.394352 CAACCCTTATTCGGCCAGCT 60.394 55.000 2.24 0.00 0.00 4.24
2335 5197 3.253432 GGACCTGAAACATTTGGAGACAC 59.747 47.826 0.00 0.00 42.67 3.67
2351 5219 3.270877 AGACACTGAAATTGGATACGGC 58.729 45.455 0.00 0.00 42.51 5.68
2357 5228 7.224297 ACACTGAAATTGGATACGGCTATTAT 58.776 34.615 0.00 0.00 42.51 1.28
2414 5285 5.447818 GCTTGTTGCATCTACATGTTCCTAC 60.448 44.000 2.30 0.00 42.31 3.18
2415 5286 5.159273 TGTTGCATCTACATGTTCCTACA 57.841 39.130 2.30 0.00 38.95 2.74
2485 5357 2.620115 CTGGTGAACTTTGATGTGCACT 59.380 45.455 19.41 3.19 43.99 4.40
2506 5378 6.038271 GCACTTGAACTCGGTGGATAATTTAT 59.962 38.462 0.00 0.00 0.00 1.40
2553 5425 6.122277 TCTCAGGTCTCTTGATTTTTGTTGT 58.878 36.000 0.00 0.00 0.00 3.32
2590 5462 0.673437 CACCAGCCAACGTGGAATTT 59.327 50.000 8.04 0.00 40.96 1.82
2618 5490 1.269448 CATTTTCTGGTGTTCCGTGGG 59.731 52.381 0.00 0.00 36.30 4.61
2650 5522 6.492007 TCAGTTGCAATCTGAGAAATCTTC 57.508 37.500 20.65 0.00 37.07 2.87
2651 5523 5.999600 TCAGTTGCAATCTGAGAAATCTTCA 59.000 36.000 20.65 3.14 37.07 3.02
2658 5530 6.496571 CAATCTGAGAAATCTTCAATCCTGC 58.503 40.000 0.00 0.00 0.00 4.85
2679 5551 6.313519 TGCAGTAACATATTTTCTCCTCCT 57.686 37.500 0.00 0.00 0.00 3.69
2681 5553 7.175104 TGCAGTAACATATTTTCTCCTCCTTT 58.825 34.615 0.00 0.00 0.00 3.11
2702 5574 5.514274 TTTGTTGAATTGGGTTCTCTGAC 57.486 39.130 0.00 0.00 37.72 3.51
2762 5634 2.030371 TGCAGCAACTTGGATGTTTCA 58.970 42.857 0.00 0.00 0.00 2.69
2772 5645 1.003118 TGGATGTTTCAGAGGGTTCCG 59.997 52.381 0.00 0.00 0.00 4.30
2773 5646 1.003233 GGATGTTTCAGAGGGTTCCGT 59.997 52.381 0.00 0.00 0.00 4.69
2774 5647 2.347731 GATGTTTCAGAGGGTTCCGTC 58.652 52.381 3.66 3.66 0.00 4.79
2779 5652 1.376037 CAGAGGGTTCCGTCTTGGC 60.376 63.158 10.79 0.00 37.80 4.52
2780 5653 1.536662 AGAGGGTTCCGTCTTGGCT 60.537 57.895 8.07 0.00 37.80 4.75
2782 5655 1.827399 GAGGGTTCCGTCTTGGCTCA 61.827 60.000 4.54 0.00 37.80 4.26
2802 5675 2.033801 CAGTCAACACCAAAAGCTCTGG 59.966 50.000 12.25 12.25 40.05 3.86
2818 5691 6.374417 AGCTCTGGAAGTTAGGAATTTGTA 57.626 37.500 0.00 0.00 33.76 2.41
2822 5695 7.415653 GCTCTGGAAGTTAGGAATTTGTATTGG 60.416 40.741 0.00 0.00 33.76 3.16
2823 5696 6.889722 TCTGGAAGTTAGGAATTTGTATTGGG 59.110 38.462 0.00 0.00 33.76 4.12
2824 5697 6.795590 TGGAAGTTAGGAATTTGTATTGGGA 58.204 36.000 0.00 0.00 0.00 4.37
3218 6170 5.223449 AGAGTCATTTTCGTCCCAGTTTA 57.777 39.130 0.00 0.00 0.00 2.01
3234 6186 2.496470 AGTTTAGGTACTCTTCGGCCAG 59.504 50.000 2.24 0.00 41.75 4.85
3432 6384 4.702131 ACTTTGATTTGCTAGCAGGGTTAG 59.298 41.667 18.45 13.89 0.00 2.34
3433 6385 3.281727 TGATTTGCTAGCAGGGTTAGG 57.718 47.619 18.45 0.00 0.00 2.69
3434 6386 1.950216 GATTTGCTAGCAGGGTTAGGC 59.050 52.381 18.45 0.00 0.00 3.93
3435 6387 0.991920 TTTGCTAGCAGGGTTAGGCT 59.008 50.000 18.45 0.00 43.94 4.58
3436 6388 0.991920 TTGCTAGCAGGGTTAGGCTT 59.008 50.000 18.45 0.00 41.41 4.35
3437 6389 0.253044 TGCTAGCAGGGTTAGGCTTG 59.747 55.000 14.93 0.00 41.41 4.01
3438 6390 0.253327 GCTAGCAGGGTTAGGCTTGT 59.747 55.000 10.63 0.00 41.41 3.16
3439 6391 1.340114 GCTAGCAGGGTTAGGCTTGTT 60.340 52.381 10.63 0.00 41.41 2.83
3440 6392 2.880167 GCTAGCAGGGTTAGGCTTGTTT 60.880 50.000 10.63 0.00 41.41 2.83
3441 6393 1.620822 AGCAGGGTTAGGCTTGTTTG 58.379 50.000 0.00 0.00 36.92 2.93
3442 6394 0.603065 GCAGGGTTAGGCTTGTTTGG 59.397 55.000 0.00 0.00 0.00 3.28
3443 6395 1.821666 GCAGGGTTAGGCTTGTTTGGA 60.822 52.381 0.00 0.00 0.00 3.53
3444 6396 2.807676 CAGGGTTAGGCTTGTTTGGAT 58.192 47.619 0.00 0.00 0.00 3.41
3445 6397 2.493278 CAGGGTTAGGCTTGTTTGGATG 59.507 50.000 0.00 0.00 0.00 3.51
3446 6398 2.378547 AGGGTTAGGCTTGTTTGGATGA 59.621 45.455 0.00 0.00 0.00 2.92
3447 6399 2.492088 GGGTTAGGCTTGTTTGGATGAC 59.508 50.000 0.00 0.00 0.00 3.06
3448 6400 3.153919 GGTTAGGCTTGTTTGGATGACA 58.846 45.455 0.00 0.00 0.00 3.58
3449 6401 3.191371 GGTTAGGCTTGTTTGGATGACAG 59.809 47.826 0.00 0.00 0.00 3.51
3450 6402 1.251251 AGGCTTGTTTGGATGACAGC 58.749 50.000 0.00 0.00 0.00 4.40
3451 6403 0.244721 GGCTTGTTTGGATGACAGCC 59.755 55.000 1.75 1.75 35.64 4.85
3452 6404 0.244721 GCTTGTTTGGATGACAGCCC 59.755 55.000 7.40 0.00 0.00 5.19
3453 6405 0.523072 CTTGTTTGGATGACAGCCCG 59.477 55.000 7.40 0.00 0.00 6.13
3454 6406 0.893270 TTGTTTGGATGACAGCCCGG 60.893 55.000 7.40 0.00 0.00 5.73
3455 6407 2.046285 GTTTGGATGACAGCCCGGG 61.046 63.158 19.09 19.09 0.00 5.73
3456 6408 3.280938 TTTGGATGACAGCCCGGGG 62.281 63.158 25.28 9.31 0.00 5.73
3457 6409 4.731853 TGGATGACAGCCCGGGGA 62.732 66.667 25.28 0.00 0.00 4.81
3458 6410 4.176752 GGATGACAGCCCGGGGAC 62.177 72.222 25.28 6.25 0.00 4.46
3470 6422 4.759205 GGGGACGCCCTGCCAATT 62.759 66.667 13.58 0.00 44.66 2.32
3471 6423 2.679996 GGGACGCCCTGCCAATTT 60.680 61.111 7.58 0.00 41.34 1.82
3472 6424 1.379309 GGGACGCCCTGCCAATTTA 60.379 57.895 7.58 0.00 41.34 1.40
3473 6425 0.755327 GGGACGCCCTGCCAATTTAT 60.755 55.000 7.58 0.00 41.34 1.40
3474 6426 1.111277 GGACGCCCTGCCAATTTATT 58.889 50.000 0.00 0.00 0.00 1.40
3475 6427 1.067060 GGACGCCCTGCCAATTTATTC 59.933 52.381 0.00 0.00 0.00 1.75
3476 6428 0.738389 ACGCCCTGCCAATTTATTCG 59.262 50.000 0.00 0.00 0.00 3.34
3477 6429 0.594796 CGCCCTGCCAATTTATTCGC 60.595 55.000 0.00 0.00 0.00 4.70
3478 6430 0.594796 GCCCTGCCAATTTATTCGCG 60.595 55.000 0.00 0.00 0.00 5.87
3479 6431 0.738389 CCCTGCCAATTTATTCGCGT 59.262 50.000 5.77 0.00 0.00 6.01
3480 6432 1.134175 CCCTGCCAATTTATTCGCGTT 59.866 47.619 5.77 0.00 0.00 4.84
3481 6433 2.184448 CCTGCCAATTTATTCGCGTTG 58.816 47.619 5.77 1.39 0.00 4.10
3482 6434 2.159448 CCTGCCAATTTATTCGCGTTGA 60.159 45.455 5.77 0.00 0.00 3.18
3483 6435 2.845967 CTGCCAATTTATTCGCGTTGAC 59.154 45.455 5.77 0.00 0.00 3.18
3484 6436 2.182014 GCCAATTTATTCGCGTTGACC 58.818 47.619 5.77 0.00 0.00 4.02
3485 6437 2.792749 CCAATTTATTCGCGTTGACCC 58.207 47.619 5.77 0.00 0.00 4.46
3486 6438 2.478879 CCAATTTATTCGCGTTGACCCC 60.479 50.000 5.77 0.00 0.00 4.95
3487 6439 2.116827 ATTTATTCGCGTTGACCCCA 57.883 45.000 5.77 0.00 0.00 4.96
3488 6440 1.893544 TTTATTCGCGTTGACCCCAA 58.106 45.000 5.77 0.00 0.00 4.12
3489 6441 1.158434 TTATTCGCGTTGACCCCAAC 58.842 50.000 5.77 0.00 46.89 3.77
3502 6454 3.672293 CCAACGCTTGGCTCATGT 58.328 55.556 4.23 0.00 45.17 3.21
3503 6455 1.959085 CCAACGCTTGGCTCATGTT 59.041 52.632 4.23 0.00 45.17 2.71
3504 6456 0.314935 CCAACGCTTGGCTCATGTTT 59.685 50.000 4.23 0.00 45.17 2.83
3505 6457 1.411394 CAACGCTTGGCTCATGTTTG 58.589 50.000 0.00 0.00 0.00 2.93
3506 6458 0.314935 AACGCTTGGCTCATGTTTGG 59.685 50.000 0.00 0.00 0.00 3.28
3507 6459 0.823356 ACGCTTGGCTCATGTTTGGT 60.823 50.000 0.00 0.00 0.00 3.67
3508 6460 0.314935 CGCTTGGCTCATGTTTGGTT 59.685 50.000 0.00 0.00 0.00 3.67
3509 6461 1.787012 GCTTGGCTCATGTTTGGTTG 58.213 50.000 0.00 0.00 0.00 3.77
3510 6462 1.606224 GCTTGGCTCATGTTTGGTTGG 60.606 52.381 0.00 0.00 0.00 3.77
3511 6463 0.392336 TTGGCTCATGTTTGGTTGGC 59.608 50.000 0.00 0.00 0.00 4.52
3512 6464 0.469705 TGGCTCATGTTTGGTTGGCT 60.470 50.000 0.00 0.00 0.00 4.75
3513 6465 0.681175 GGCTCATGTTTGGTTGGCTT 59.319 50.000 0.00 0.00 0.00 4.35
3514 6466 1.337167 GGCTCATGTTTGGTTGGCTTC 60.337 52.381 0.00 0.00 0.00 3.86
3515 6467 1.337167 GCTCATGTTTGGTTGGCTTCC 60.337 52.381 0.00 0.00 0.00 3.46
3516 6468 1.962807 CTCATGTTTGGTTGGCTTCCA 59.037 47.619 0.00 0.00 0.00 3.53
3517 6469 2.364970 CTCATGTTTGGTTGGCTTCCAA 59.635 45.455 9.22 9.22 41.69 3.53
3518 6470 2.768527 TCATGTTTGGTTGGCTTCCAAA 59.231 40.909 17.70 17.70 45.73 3.28
3524 6476 4.769345 TTGGTTGGCTTCCAAATTTTCT 57.231 36.364 10.49 0.00 45.73 2.52
3525 6477 4.070630 TGGTTGGCTTCCAAATTTTCTG 57.929 40.909 0.00 0.00 45.73 3.02
3526 6478 3.708631 TGGTTGGCTTCCAAATTTTCTGA 59.291 39.130 0.00 0.00 45.73 3.27
3527 6479 4.347583 TGGTTGGCTTCCAAATTTTCTGAT 59.652 37.500 0.00 0.00 45.73 2.90
3528 6480 4.931601 GGTTGGCTTCCAAATTTTCTGATC 59.068 41.667 0.00 0.00 45.73 2.92
3529 6481 4.806640 TGGCTTCCAAATTTTCTGATCC 57.193 40.909 0.00 0.00 0.00 3.36
3530 6482 3.515104 TGGCTTCCAAATTTTCTGATCCC 59.485 43.478 0.00 0.00 0.00 3.85
3531 6483 3.771479 GGCTTCCAAATTTTCTGATCCCT 59.229 43.478 0.00 0.00 0.00 4.20
3532 6484 4.956075 GGCTTCCAAATTTTCTGATCCCTA 59.044 41.667 0.00 0.00 0.00 3.53
3533 6485 5.600069 GGCTTCCAAATTTTCTGATCCCTAT 59.400 40.000 0.00 0.00 0.00 2.57
3534 6486 6.239148 GGCTTCCAAATTTTCTGATCCCTATC 60.239 42.308 0.00 0.00 0.00 2.08
3535 6487 6.322201 GCTTCCAAATTTTCTGATCCCTATCA 59.678 38.462 0.00 0.00 39.87 2.15
3536 6488 7.147846 GCTTCCAAATTTTCTGATCCCTATCAA 60.148 37.037 0.00 0.00 41.57 2.57
3537 6489 8.843308 TTCCAAATTTTCTGATCCCTATCAAT 57.157 30.769 0.00 0.00 41.57 2.57
3538 6490 9.934784 TTCCAAATTTTCTGATCCCTATCAATA 57.065 29.630 0.00 0.00 41.57 1.90
3545 6497 9.713684 TTTTCTGATCCCTATCAATATTTTGGT 57.286 29.630 0.00 0.00 41.57 3.67
3546 6498 8.924511 TTCTGATCCCTATCAATATTTTGGTC 57.075 34.615 0.00 0.00 41.57 4.02
3547 6499 8.044574 TCTGATCCCTATCAATATTTTGGTCA 57.955 34.615 0.00 0.00 41.57 4.02
3548 6500 8.672329 TCTGATCCCTATCAATATTTTGGTCAT 58.328 33.333 0.00 0.00 41.57 3.06
3549 6501 8.868522 TGATCCCTATCAATATTTTGGTCATC 57.131 34.615 0.00 0.00 39.20 2.92
3550 6502 7.890127 TGATCCCTATCAATATTTTGGTCATCC 59.110 37.037 0.00 0.00 39.20 3.51
3551 6503 6.552008 TCCCTATCAATATTTTGGTCATCCC 58.448 40.000 0.00 0.00 33.44 3.85
3552 6504 5.415701 CCCTATCAATATTTTGGTCATCCCG 59.584 44.000 0.00 0.00 35.15 5.14
3553 6505 6.003950 CCTATCAATATTTTGGTCATCCCGT 58.996 40.000 0.00 0.00 35.15 5.28
3554 6506 5.772825 ATCAATATTTTGGTCATCCCGTG 57.227 39.130 0.00 0.00 35.15 4.94
3555 6507 4.594970 TCAATATTTTGGTCATCCCGTGT 58.405 39.130 0.00 0.00 35.15 4.49
3556 6508 5.013547 TCAATATTTTGGTCATCCCGTGTT 58.986 37.500 0.00 0.00 35.15 3.32
3557 6509 6.181190 TCAATATTTTGGTCATCCCGTGTTA 58.819 36.000 0.00 0.00 35.15 2.41
3558 6510 6.831353 TCAATATTTTGGTCATCCCGTGTTAT 59.169 34.615 0.00 0.00 35.15 1.89
3559 6511 7.340743 TCAATATTTTGGTCATCCCGTGTTATT 59.659 33.333 0.00 0.00 35.15 1.40
3560 6512 5.993748 ATTTTGGTCATCCCGTGTTATTT 57.006 34.783 0.00 0.00 35.15 1.40
3561 6513 5.793030 TTTTGGTCATCCCGTGTTATTTT 57.207 34.783 0.00 0.00 35.15 1.82
3562 6514 4.775058 TTGGTCATCCCGTGTTATTTTG 57.225 40.909 0.00 0.00 35.15 2.44
3563 6515 2.490115 TGGTCATCCCGTGTTATTTTGC 59.510 45.455 0.00 0.00 35.15 3.68
3564 6516 2.477189 GGTCATCCCGTGTTATTTTGCG 60.477 50.000 0.00 0.00 0.00 4.85
3565 6517 1.131504 TCATCCCGTGTTATTTTGCGC 59.868 47.619 0.00 0.00 0.00 6.09
3566 6518 0.454196 ATCCCGTGTTATTTTGCGCC 59.546 50.000 4.18 0.00 0.00 6.53
3567 6519 1.153920 CCCGTGTTATTTTGCGCCC 60.154 57.895 4.18 0.00 0.00 6.13
3568 6520 1.513160 CCGTGTTATTTTGCGCCCG 60.513 57.895 4.18 0.00 0.00 6.13
3569 6521 2.149599 CGTGTTATTTTGCGCCCGC 61.150 57.895 4.18 5.60 42.35 6.13
3586 6538 3.197790 CAGCTGGCGATTCCCGTG 61.198 66.667 5.57 0.00 41.15 4.94
3587 6539 4.473520 AGCTGGCGATTCCCGTGG 62.474 66.667 0.00 0.00 41.15 4.94
3593 6545 4.444838 CGATTCCCGTGGCGGTGA 62.445 66.667 6.82 1.29 46.80 4.02
3594 6546 2.046700 GATTCCCGTGGCGGTGAA 60.047 61.111 6.82 9.66 46.80 3.18
3595 6547 1.673009 GATTCCCGTGGCGGTGAAA 60.673 57.895 6.82 0.00 46.80 2.69
3596 6548 1.228306 ATTCCCGTGGCGGTGAAAA 60.228 52.632 6.82 0.00 46.80 2.29
3597 6549 0.610785 ATTCCCGTGGCGGTGAAAAT 60.611 50.000 6.82 0.00 46.80 1.82
3598 6550 1.519751 TTCCCGTGGCGGTGAAAATG 61.520 55.000 6.82 0.00 46.80 2.32
3599 6551 2.126502 CCGTGGCGGTGAAAATGC 60.127 61.111 0.00 0.00 42.73 3.56
3600 6552 2.625823 CCGTGGCGGTGAAAATGCT 61.626 57.895 0.00 0.00 42.73 3.79
3601 6553 1.154225 CGTGGCGGTGAAAATGCTC 60.154 57.895 0.00 0.00 0.00 4.26
3602 6554 1.154225 GTGGCGGTGAAAATGCTCG 60.154 57.895 0.00 0.00 0.00 5.03
3603 6555 2.202479 GGCGGTGAAAATGCTCGC 60.202 61.111 0.00 0.00 44.80 5.03
3604 6556 2.202479 GCGGTGAAAATGCTCGCC 60.202 61.111 0.00 0.00 41.75 5.54
3605 6557 2.976840 GCGGTGAAAATGCTCGCCA 61.977 57.895 4.39 0.00 44.83 5.69
3606 6558 1.578926 CGGTGAAAATGCTCGCCAA 59.421 52.632 4.39 0.00 44.83 4.52
3607 6559 0.171007 CGGTGAAAATGCTCGCCAAT 59.829 50.000 4.39 0.00 44.83 3.16
3608 6560 1.400142 CGGTGAAAATGCTCGCCAATA 59.600 47.619 4.39 0.00 44.83 1.90
3609 6561 2.159448 CGGTGAAAATGCTCGCCAATAA 60.159 45.455 4.39 0.00 44.83 1.40
3610 6562 3.489059 CGGTGAAAATGCTCGCCAATAAT 60.489 43.478 4.39 0.00 44.83 1.28
3611 6563 4.432712 GGTGAAAATGCTCGCCAATAATT 58.567 39.130 0.00 0.00 44.13 1.40
3612 6564 4.869861 GGTGAAAATGCTCGCCAATAATTT 59.130 37.500 0.00 0.00 44.13 1.82
3613 6565 5.220453 GGTGAAAATGCTCGCCAATAATTTG 60.220 40.000 0.00 0.00 44.13 2.32
3621 6573 3.360886 CCAATAATTTGGCGTGCCC 57.639 52.632 8.69 0.00 45.71 5.36
3622 6574 0.823460 CCAATAATTTGGCGTGCCCT 59.177 50.000 8.69 0.00 45.71 5.19
3623 6575 1.202405 CCAATAATTTGGCGTGCCCTC 60.202 52.381 8.69 0.00 45.71 4.30
3624 6576 0.738389 AATAATTTGGCGTGCCCTCG 59.262 50.000 8.69 0.00 34.56 4.63
3625 6577 1.101049 ATAATTTGGCGTGCCCTCGG 61.101 55.000 8.69 0.00 34.56 4.63
3626 6578 2.472414 TAATTTGGCGTGCCCTCGGT 62.472 55.000 8.69 0.00 34.56 4.69
3627 6579 3.860930 ATTTGGCGTGCCCTCGGTT 62.861 57.895 8.69 0.00 34.56 4.44
3628 6580 4.572571 TTGGCGTGCCCTCGGTTT 62.573 61.111 8.69 0.00 34.56 3.27
3638 6590 4.697756 CTCGGTTTGGCAGGGCGA 62.698 66.667 0.00 0.00 0.00 5.54
3639 6591 4.697756 TCGGTTTGGCAGGGCGAG 62.698 66.667 0.00 0.00 0.00 5.03
3642 6594 4.043200 GTTTGGCAGGGCGAGCAC 62.043 66.667 0.00 0.00 0.00 4.40
3656 6608 3.680156 GCACGGGCTCAATCCAAA 58.320 55.556 0.00 0.00 36.96 3.28
3657 6609 1.212751 GCACGGGCTCAATCCAAAC 59.787 57.895 0.00 0.00 36.96 2.93
3658 6610 1.523154 GCACGGGCTCAATCCAAACA 61.523 55.000 0.00 0.00 36.96 2.83
3659 6611 0.523072 CACGGGCTCAATCCAAACAG 59.477 55.000 0.00 0.00 0.00 3.16
3660 6612 1.244019 ACGGGCTCAATCCAAACAGC 61.244 55.000 0.00 0.00 0.00 4.40
3662 6614 1.893062 GGCTCAATCCAAACAGCCC 59.107 57.895 0.00 0.00 45.04 5.19
3701 6653 3.433957 TGTGGTTGTGGATACGAAAATCG 59.566 43.478 0.00 0.00 46.93 3.34
3711 6663 2.919666 ACGAAAATCGCCAGAAATGG 57.080 45.000 0.00 0.00 45.12 3.16
3738 6690 7.886629 ATTATAATCCATGGTGGTATGATGC 57.113 36.000 12.58 0.00 39.03 3.91
3796 6748 1.376812 CCCCGTGCCTAACCTTCAC 60.377 63.158 0.00 0.00 0.00 3.18
3828 6780 0.874175 GCCCAAACTCCAAACGTTGC 60.874 55.000 0.00 0.00 0.00 4.17
3847 6799 2.097825 GCAACTGGAAATCCATGAGCT 58.902 47.619 1.93 0.00 46.46 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 121 1.134280 AGCGGATGCAGCTACAATCTT 60.134 47.619 0.22 0.00 44.05 2.40
68 305 2.224426 TGTGTGGTGTCCATGGTCTTAC 60.224 50.000 12.58 2.66 35.28 2.34
80 317 2.057137 AATGCAGAGTTGTGTGGTGT 57.943 45.000 0.00 0.00 0.00 4.16
84 321 6.902341 ACATAGTAAAATGCAGAGTTGTGTG 58.098 36.000 0.00 0.00 0.00 3.82
86 323 7.584108 TGAACATAGTAAAATGCAGAGTTGTG 58.416 34.615 0.00 0.00 0.00 3.33
87 324 7.744087 TGAACATAGTAAAATGCAGAGTTGT 57.256 32.000 0.00 0.00 0.00 3.32
88 325 7.538678 GGTTGAACATAGTAAAATGCAGAGTTG 59.461 37.037 0.00 0.00 0.00 3.16
89 326 7.230510 TGGTTGAACATAGTAAAATGCAGAGTT 59.769 33.333 0.00 0.00 0.00 3.01
90 327 6.714810 TGGTTGAACATAGTAAAATGCAGAGT 59.285 34.615 0.00 0.00 0.00 3.24
91 328 7.144722 TGGTTGAACATAGTAAAATGCAGAG 57.855 36.000 0.00 0.00 0.00 3.35
92 329 6.150976 CCTGGTTGAACATAGTAAAATGCAGA 59.849 38.462 0.00 0.00 0.00 4.26
93 330 6.150976 TCCTGGTTGAACATAGTAAAATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
94 331 6.007076 TCCTGGTTGAACATAGTAAAATGCA 58.993 36.000 0.00 0.00 0.00 3.96
95 332 6.509418 TCCTGGTTGAACATAGTAAAATGC 57.491 37.500 0.00 0.00 0.00 3.56
96 333 9.410556 CTTTTCCTGGTTGAACATAGTAAAATG 57.589 33.333 0.00 0.00 0.00 2.32
97 334 9.362151 TCTTTTCCTGGTTGAACATAGTAAAAT 57.638 29.630 0.00 0.00 0.00 1.82
98 335 8.754991 TCTTTTCCTGGTTGAACATAGTAAAA 57.245 30.769 0.00 0.73 0.00 1.52
99 336 8.215050 TCTCTTTTCCTGGTTGAACATAGTAAA 58.785 33.333 0.00 0.00 0.00 2.01
100 337 7.741785 TCTCTTTTCCTGGTTGAACATAGTAA 58.258 34.615 0.00 0.00 0.00 2.24
101 338 7.311092 TCTCTTTTCCTGGTTGAACATAGTA 57.689 36.000 0.00 0.00 0.00 1.82
102 339 6.187727 TCTCTTTTCCTGGTTGAACATAGT 57.812 37.500 0.00 0.00 0.00 2.12
103 340 6.881065 TGATCTCTTTTCCTGGTTGAACATAG 59.119 38.462 0.00 0.00 0.00 2.23
104 341 6.655003 GTGATCTCTTTTCCTGGTTGAACATA 59.345 38.462 0.00 0.00 0.00 2.29
105 342 5.474876 GTGATCTCTTTTCCTGGTTGAACAT 59.525 40.000 0.00 0.00 0.00 2.71
106 343 4.821805 GTGATCTCTTTTCCTGGTTGAACA 59.178 41.667 0.00 0.00 0.00 3.18
107 344 4.821805 TGTGATCTCTTTTCCTGGTTGAAC 59.178 41.667 0.00 0.00 0.00 3.18
108 345 4.821805 GTGTGATCTCTTTTCCTGGTTGAA 59.178 41.667 0.00 0.00 0.00 2.69
109 346 4.141505 TGTGTGATCTCTTTTCCTGGTTGA 60.142 41.667 0.00 0.00 0.00 3.18
110 347 4.023707 GTGTGTGATCTCTTTTCCTGGTTG 60.024 45.833 0.00 0.00 0.00 3.77
111 348 4.137543 GTGTGTGATCTCTTTTCCTGGTT 58.862 43.478 0.00 0.00 0.00 3.67
112 349 3.136443 TGTGTGTGATCTCTTTTCCTGGT 59.864 43.478 0.00 0.00 0.00 4.00
113 350 3.743521 TGTGTGTGATCTCTTTTCCTGG 58.256 45.455 0.00 0.00 0.00 4.45
114 351 5.704515 AGATTGTGTGTGATCTCTTTTCCTG 59.295 40.000 0.00 0.00 0.00 3.86
115 352 5.874093 AGATTGTGTGTGATCTCTTTTCCT 58.126 37.500 0.00 0.00 0.00 3.36
116 353 5.163913 CGAGATTGTGTGTGATCTCTTTTCC 60.164 44.000 10.54 0.00 43.82 3.13
117 354 5.163913 CCGAGATTGTGTGTGATCTCTTTTC 60.164 44.000 10.54 0.00 43.82 2.29
118 355 4.692625 CCGAGATTGTGTGTGATCTCTTTT 59.307 41.667 10.54 0.00 43.82 2.27
119 356 4.248859 CCGAGATTGTGTGTGATCTCTTT 58.751 43.478 10.54 0.00 43.82 2.52
120 357 3.854666 CCGAGATTGTGTGTGATCTCTT 58.145 45.455 10.54 0.00 43.82 2.85
136 373 6.183361 TGTTTTCCTATTATATGTGGCCGAGA 60.183 38.462 0.00 0.00 0.00 4.04
140 377 8.409358 AGATTGTTTTCCTATTATATGTGGCC 57.591 34.615 0.00 0.00 0.00 5.36
165 420 7.896811 TCTCTTCTAGTGCAGAAAATTCAGTA 58.103 34.615 0.00 0.00 42.76 2.74
196 451 0.610174 GAGCTCTGTGGTGTCCATGA 59.390 55.000 6.43 0.00 35.28 3.07
217 472 7.759489 TTTCTGGTTTAACATAGCAAGATGT 57.241 32.000 0.00 0.00 41.92 3.06
376 672 1.037493 TCGTGTGCTTGGTGTACTCT 58.963 50.000 0.00 0.00 32.31 3.24
393 689 3.197790 CCTCCCGCTGCATGTTCG 61.198 66.667 0.00 0.00 0.00 3.95
498 794 0.764890 CACCTGGTTCTTCCACTCCA 59.235 55.000 0.00 0.00 41.93 3.86
550 846 1.938577 GATGCATGCATGAAGTCGTCT 59.061 47.619 36.73 10.61 36.70 4.18
567 863 5.453057 CCTCTGTTAGAATCCTCACCAGATG 60.453 48.000 0.00 0.00 0.00 2.90
628 924 2.465920 CGTGCTCTCAACGCGTTC 59.534 61.111 23.92 11.27 36.34 3.95
708 3410 5.471456 CACTCATCAAGCTTACACCTTTTCT 59.529 40.000 0.00 0.00 0.00 2.52
717 3419 3.197983 AGGGGTACACTCATCAAGCTTAC 59.802 47.826 0.00 0.00 0.00 2.34
734 3436 4.409187 GCTACATAGCTAGAACTAGGGGT 58.591 47.826 10.30 0.00 45.62 4.95
757 3459 0.757188 CAGGCACCCGAGGATCTACT 60.757 60.000 0.00 0.00 0.00 2.57
1027 3737 3.740832 GGTTGTGGCATCTTAAGTTTTGC 59.259 43.478 15.01 15.01 0.00 3.68
1062 3773 1.207811 TCAATGAGATCTTGCGCCTCA 59.792 47.619 14.34 14.34 40.68 3.86
1142 3855 6.970484 ACTGTAAAACTTCAAAGGCACTATG 58.030 36.000 0.00 0.00 38.49 2.23
1146 3859 5.500645 AGACTGTAAAACTTCAAAGGCAC 57.499 39.130 0.00 0.00 0.00 5.01
1147 3860 6.116806 TGTAGACTGTAAAACTTCAAAGGCA 58.883 36.000 0.00 0.00 0.00 4.75
1148 3861 6.613755 TGTAGACTGTAAAACTTCAAAGGC 57.386 37.500 0.00 0.00 0.00 4.35
1156 3873 7.287810 AGGGACAAATTGTAGACTGTAAAACT 58.712 34.615 0.00 0.00 0.00 2.66
1168 3885 6.428083 TGACAGTAGAAGGGACAAATTGTA 57.572 37.500 0.00 0.00 0.00 2.41
1169 3886 5.304686 TGACAGTAGAAGGGACAAATTGT 57.695 39.130 0.00 0.00 0.00 2.71
1177 3894 9.231297 CAAATCTTAAAATGACAGTAGAAGGGA 57.769 33.333 0.00 0.00 0.00 4.20
1217 3934 9.948964 TTAAATATGCACTCTATCAGTATGCAT 57.051 29.630 13.85 13.85 43.68 3.96
1269 3986 7.572546 TTCCTCCCATATATCATCAATGACA 57.427 36.000 0.00 0.00 40.03 3.58
1290 4007 6.238648 ACGAATAATTCCCCATACTGATTCC 58.761 40.000 0.00 0.00 0.00 3.01
1304 4021 6.664515 TCTGGAAACACACAACGAATAATTC 58.335 36.000 0.00 0.00 35.60 2.17
1319 4036 2.432874 TCTCGTTGGTTCTCTGGAAACA 59.567 45.455 0.00 0.00 46.10 2.83
1340 4057 5.242434 TCGTGGTTGTGATTACTTTGCTAT 58.758 37.500 0.00 0.00 0.00 2.97
1370 4087 3.007940 ACAGGTTGCATTAGCTACTGTCA 59.992 43.478 12.19 8.15 44.33 3.58
1392 4109 4.879197 AATGATCTCATGCCGATAGTCA 57.121 40.909 0.00 0.00 36.56 3.41
1393 4110 6.159293 TGTAAATGATCTCATGCCGATAGTC 58.841 40.000 0.00 0.00 36.56 2.59
1408 4125 7.621428 CAAGAGGACACATCTTGTAAATGAT 57.379 36.000 15.01 0.00 45.58 2.45
1423 4140 4.141505 TGAGTTTTGGTCATCAAGAGGACA 60.142 41.667 15.59 1.09 43.26 4.02
1548 4265 4.201724 GCCAAAAGACTAGCAATACTGACG 60.202 45.833 0.00 0.00 0.00 4.35
1572 4289 3.445450 TCACTGATCTAGTTGGCTGACTC 59.555 47.826 0.00 0.00 37.60 3.36
1666 4386 7.727578 TGTTGTATCTAAGGTTCAGTATCCA 57.272 36.000 0.00 0.00 0.00 3.41
1667 4387 9.262358 GATTGTTGTATCTAAGGTTCAGTATCC 57.738 37.037 0.00 0.00 0.00 2.59
1683 4403 6.127338 TGAGACGATGAGGAAGATTGTTGTAT 60.127 38.462 0.00 0.00 0.00 2.29
1721 4441 4.323028 CCTCTGGGTACATGGCAGTATATG 60.323 50.000 0.00 0.00 0.00 1.78
1727 4447 1.135094 ATCCTCTGGGTACATGGCAG 58.865 55.000 0.00 0.00 0.00 4.85
1753 4473 8.268850 TGCCTAACAAGATCATTCTTTCTAAC 57.731 34.615 0.00 0.00 40.28 2.34
1773 4493 1.490490 CCTTCAGCTACCCATTGCCTA 59.510 52.381 0.00 0.00 0.00 3.93
1785 4505 0.036732 TGCGGATGAAACCTTCAGCT 59.963 50.000 4.80 0.00 45.00 4.24
1815 4535 2.013563 GCGACCTCATTTGCATCCTCA 61.014 52.381 0.00 0.00 0.00 3.86
1842 4562 3.878086 TTGACAAGCTCGTTAAAGCAG 57.122 42.857 2.15 0.00 45.00 4.24
1851 4571 2.299993 TGCTCCTATTGACAAGCTCG 57.700 50.000 0.00 0.00 35.76 5.03
2037 4861 2.500098 TCCGTAATCCAACTGAAGGGAG 59.500 50.000 0.00 0.00 36.45 4.30
2055 4879 1.699656 CTGTGCCTTCATTCGCTCCG 61.700 60.000 0.00 0.00 0.00 4.63
2155 4984 3.449746 AAGAACCCGGATGGATTTGAA 57.550 42.857 0.73 0.00 37.49 2.69
2160 4989 3.435026 CCACATTAAGAACCCGGATGGAT 60.435 47.826 0.73 0.00 37.49 3.41
2196 5025 3.885297 GGTCAATCCTATCACCCATGTTG 59.115 47.826 0.00 0.00 0.00 3.33
2197 5026 3.788142 AGGTCAATCCTATCACCCATGTT 59.212 43.478 0.00 0.00 46.10 2.71
2297 5159 0.466372 GTCCCCAATTAGAGCTGGCC 60.466 60.000 0.00 0.00 0.00 5.36
2304 5166 4.946160 ATGTTTCAGGTCCCCAATTAGA 57.054 40.909 0.00 0.00 0.00 2.10
2335 5197 7.023575 GCAATAATAGCCGTATCCAATTTCAG 58.976 38.462 0.00 0.00 0.00 3.02
2357 5228 6.363882 TCAACAATATCAGATGGTATGGCAA 58.636 36.000 0.00 0.00 0.00 4.52
2364 5235 5.895534 AGGCAAATCAACAATATCAGATGGT 59.104 36.000 0.00 0.00 0.00 3.55
2415 5286 2.122768 CCATCAGGTAGCCTTCTTCCT 58.877 52.381 0.00 0.00 40.28 3.36
2485 5357 6.765989 CCTGATAAATTATCCACCGAGTTCAA 59.234 38.462 10.19 0.00 34.26 2.69
2506 5378 5.607939 TTTGTAAGTTCACTGAGACCTGA 57.392 39.130 0.00 0.00 0.00 3.86
2553 5425 4.916183 TGGTGGTATGTTCAACATCATCA 58.084 39.130 6.21 3.61 39.88 3.07
2618 5490 2.555757 AGATTGCAACTGAGGAGTTTGC 59.444 45.455 0.00 0.00 40.68 3.68
2650 5522 7.284034 AGGAGAAAATATGTTACTGCAGGATTG 59.716 37.037 19.93 0.00 0.00 2.67
2651 5523 7.349598 AGGAGAAAATATGTTACTGCAGGATT 58.650 34.615 19.93 0.00 0.00 3.01
2658 5530 9.014297 ACAAAAGGAGGAGAAAATATGTTACTG 57.986 33.333 0.00 0.00 0.00 2.74
2679 5551 5.163457 GGTCAGAGAACCCAATTCAACAAAA 60.163 40.000 0.00 0.00 40.09 2.44
2681 5553 3.888930 GGTCAGAGAACCCAATTCAACAA 59.111 43.478 0.00 0.00 40.09 2.83
2702 5574 3.808466 TGCTCTCAGTATTGCTAGTGG 57.192 47.619 0.00 0.00 0.00 4.00
2762 5634 1.536662 AGCCAAGACGGAACCCTCT 60.537 57.895 0.00 0.00 36.56 3.69
2772 5645 1.230324 GGTGTTGACTGAGCCAAGAC 58.770 55.000 0.14 0.14 37.15 3.01
2773 5646 0.836606 TGGTGTTGACTGAGCCAAGA 59.163 50.000 0.00 0.00 0.00 3.02
2774 5647 1.679139 TTGGTGTTGACTGAGCCAAG 58.321 50.000 0.00 0.00 34.67 3.61
2779 5652 3.003068 CAGAGCTTTTGGTGTTGACTGAG 59.997 47.826 0.00 0.00 0.00 3.35
2780 5653 2.945008 CAGAGCTTTTGGTGTTGACTGA 59.055 45.455 0.00 0.00 0.00 3.41
2782 5655 2.092429 TCCAGAGCTTTTGGTGTTGACT 60.092 45.455 15.44 0.00 37.02 3.41
3218 6170 2.711922 CGCTGGCCGAAGAGTACCT 61.712 63.158 0.00 0.00 40.02 3.08
3390 6342 3.883669 AGTCCTCCTGCATCATTTTCTC 58.116 45.455 0.00 0.00 0.00 2.87
3395 6347 3.726557 TCAAAGTCCTCCTGCATCATT 57.273 42.857 0.00 0.00 0.00 2.57
3432 6384 0.244721 GGCTGTCATCCAAACAAGCC 59.755 55.000 0.00 0.00 35.40 4.35
3433 6385 0.244721 GGGCTGTCATCCAAACAAGC 59.755 55.000 0.00 0.00 0.00 4.01
3434 6386 0.523072 CGGGCTGTCATCCAAACAAG 59.477 55.000 0.00 0.00 0.00 3.16
3435 6387 0.893270 CCGGGCTGTCATCCAAACAA 60.893 55.000 0.00 0.00 0.00 2.83
3436 6388 1.303236 CCGGGCTGTCATCCAAACA 60.303 57.895 0.00 0.00 0.00 2.83
3437 6389 2.046285 CCCGGGCTGTCATCCAAAC 61.046 63.158 8.08 0.00 0.00 2.93
3438 6390 2.354729 CCCGGGCTGTCATCCAAA 59.645 61.111 8.08 0.00 0.00 3.28
3439 6391 3.727258 CCCCGGGCTGTCATCCAA 61.727 66.667 17.73 0.00 0.00 3.53
3440 6392 4.731853 TCCCCGGGCTGTCATCCA 62.732 66.667 17.73 0.00 0.00 3.41
3441 6393 4.176752 GTCCCCGGGCTGTCATCC 62.177 72.222 17.73 0.00 0.00 3.51
3442 6394 4.530857 CGTCCCCGGGCTGTCATC 62.531 72.222 17.73 0.00 0.00 2.92
3454 6406 0.755327 ATAAATTGGCAGGGCGTCCC 60.755 55.000 0.08 4.26 45.90 4.46
3455 6407 1.067060 GAATAAATTGGCAGGGCGTCC 59.933 52.381 0.00 0.00 0.00 4.79
3456 6408 1.268539 CGAATAAATTGGCAGGGCGTC 60.269 52.381 0.00 0.00 0.00 5.19
3457 6409 0.738389 CGAATAAATTGGCAGGGCGT 59.262 50.000 0.00 0.00 0.00 5.68
3458 6410 0.594796 GCGAATAAATTGGCAGGGCG 60.595 55.000 4.99 0.00 40.59 6.13
3459 6411 0.594796 CGCGAATAAATTGGCAGGGC 60.595 55.000 0.00 0.00 40.87 5.19
3460 6412 0.738389 ACGCGAATAAATTGGCAGGG 59.262 50.000 15.93 0.00 40.87 4.45
3461 6413 2.159448 TCAACGCGAATAAATTGGCAGG 60.159 45.455 15.93 0.00 40.87 4.85
3462 6414 2.845967 GTCAACGCGAATAAATTGGCAG 59.154 45.455 15.93 5.59 40.87 4.85
3463 6415 2.414824 GGTCAACGCGAATAAATTGGCA 60.415 45.455 15.93 0.00 40.87 4.92
3464 6416 2.182014 GGTCAACGCGAATAAATTGGC 58.818 47.619 15.93 7.08 38.02 4.52
3465 6417 2.478879 GGGGTCAACGCGAATAAATTGG 60.479 50.000 15.93 0.00 0.00 3.16
3466 6418 2.162608 TGGGGTCAACGCGAATAAATTG 59.837 45.455 15.93 5.71 34.15 2.32
3467 6419 2.438411 TGGGGTCAACGCGAATAAATT 58.562 42.857 15.93 0.00 34.15 1.82
3468 6420 2.116827 TGGGGTCAACGCGAATAAAT 57.883 45.000 15.93 0.00 34.15 1.40
3469 6421 1.536331 GTTGGGGTCAACGCGAATAAA 59.464 47.619 15.93 0.00 42.99 1.40
3470 6422 1.158434 GTTGGGGTCAACGCGAATAA 58.842 50.000 15.93 0.00 42.99 1.40
3471 6423 2.843669 GTTGGGGTCAACGCGAATA 58.156 52.632 15.93 0.00 42.99 1.75
3472 6424 3.663202 GTTGGGGTCAACGCGAAT 58.337 55.556 15.93 0.00 42.99 3.34
3486 6438 1.411394 CAAACATGAGCCAAGCGTTG 58.589 50.000 0.00 0.00 0.00 4.10
3487 6439 0.314935 CCAAACATGAGCCAAGCGTT 59.685 50.000 0.00 0.00 0.00 4.84
3488 6440 0.823356 ACCAAACATGAGCCAAGCGT 60.823 50.000 0.00 0.00 0.00 5.07
3489 6441 0.314935 AACCAAACATGAGCCAAGCG 59.685 50.000 0.00 0.00 0.00 4.68
3490 6442 1.606224 CCAACCAAACATGAGCCAAGC 60.606 52.381 0.00 0.00 0.00 4.01
3491 6443 1.606224 GCCAACCAAACATGAGCCAAG 60.606 52.381 0.00 0.00 0.00 3.61
3492 6444 0.392336 GCCAACCAAACATGAGCCAA 59.608 50.000 0.00 0.00 0.00 4.52
3493 6445 0.469705 AGCCAACCAAACATGAGCCA 60.470 50.000 0.00 0.00 0.00 4.75
3494 6446 0.681175 AAGCCAACCAAACATGAGCC 59.319 50.000 0.00 0.00 0.00 4.70
3495 6447 1.337167 GGAAGCCAACCAAACATGAGC 60.337 52.381 0.00 0.00 0.00 4.26
3496 6448 1.962807 TGGAAGCCAACCAAACATGAG 59.037 47.619 0.00 0.00 34.25 2.90
3497 6449 2.079170 TGGAAGCCAACCAAACATGA 57.921 45.000 0.00 0.00 34.25 3.07
3498 6450 2.906691 TTGGAAGCCAACCAAACATG 57.093 45.000 0.00 0.00 43.22 3.21
3503 6455 4.163078 TCAGAAAATTTGGAAGCCAACCAA 59.837 37.500 0.00 0.00 43.82 3.67
3504 6456 3.708631 TCAGAAAATTTGGAAGCCAACCA 59.291 39.130 0.00 0.00 43.82 3.67
3505 6457 4.335400 TCAGAAAATTTGGAAGCCAACC 57.665 40.909 0.00 0.00 43.82 3.77
3506 6458 4.931601 GGATCAGAAAATTTGGAAGCCAAC 59.068 41.667 0.00 0.00 43.82 3.77
3507 6459 4.020307 GGGATCAGAAAATTTGGAAGCCAA 60.020 41.667 0.00 0.00 42.29 4.52
3508 6460 3.515104 GGGATCAGAAAATTTGGAAGCCA 59.485 43.478 0.00 0.00 0.00 4.75
3509 6461 3.771479 AGGGATCAGAAAATTTGGAAGCC 59.229 43.478 0.00 0.00 0.00 4.35
3510 6462 6.322201 TGATAGGGATCAGAAAATTTGGAAGC 59.678 38.462 0.00 0.00 37.15 3.86
3511 6463 7.886629 TGATAGGGATCAGAAAATTTGGAAG 57.113 36.000 0.00 0.00 37.15 3.46
3512 6464 8.843308 ATTGATAGGGATCAGAAAATTTGGAA 57.157 30.769 0.00 0.00 43.03 3.53
3519 6471 9.713684 ACCAAAATATTGATAGGGATCAGAAAA 57.286 29.630 0.00 0.00 43.03 2.29
3520 6472 9.354673 GACCAAAATATTGATAGGGATCAGAAA 57.645 33.333 0.00 0.00 43.03 2.52
3521 6473 8.501904 TGACCAAAATATTGATAGGGATCAGAA 58.498 33.333 0.00 0.00 43.03 3.02
3522 6474 8.044574 TGACCAAAATATTGATAGGGATCAGA 57.955 34.615 0.00 0.00 43.03 3.27
3523 6475 8.874744 ATGACCAAAATATTGATAGGGATCAG 57.125 34.615 0.00 0.00 43.03 2.90
3524 6476 7.890127 GGATGACCAAAATATTGATAGGGATCA 59.110 37.037 0.00 0.00 38.94 2.92
3525 6477 7.340487 GGGATGACCAAAATATTGATAGGGATC 59.660 40.741 0.00 0.00 38.94 3.36
3526 6478 7.184862 GGGATGACCAAAATATTGATAGGGAT 58.815 38.462 0.00 0.00 38.94 3.85
3527 6479 6.552008 GGGATGACCAAAATATTGATAGGGA 58.448 40.000 0.00 0.00 38.94 4.20
3528 6480 5.415701 CGGGATGACCAAAATATTGATAGGG 59.584 44.000 0.00 0.00 38.94 3.53
3529 6481 6.003950 ACGGGATGACCAAAATATTGATAGG 58.996 40.000 0.00 0.00 38.94 2.57
3530 6482 6.486657 ACACGGGATGACCAAAATATTGATAG 59.513 38.462 0.00 0.00 38.94 2.08
3531 6483 6.361433 ACACGGGATGACCAAAATATTGATA 58.639 36.000 0.00 0.00 38.94 2.15
3532 6484 5.200483 ACACGGGATGACCAAAATATTGAT 58.800 37.500 0.00 0.00 38.94 2.57
3533 6485 4.594970 ACACGGGATGACCAAAATATTGA 58.405 39.130 0.00 0.00 38.94 2.57
3534 6486 4.981806 ACACGGGATGACCAAAATATTG 57.018 40.909 0.00 0.00 40.22 1.90
3535 6487 7.654022 AATAACACGGGATGACCAAAATATT 57.346 32.000 0.00 0.00 40.22 1.28
3536 6488 7.654022 AAATAACACGGGATGACCAAAATAT 57.346 32.000 0.00 0.00 40.22 1.28
3537 6489 7.316640 CAAAATAACACGGGATGACCAAAATA 58.683 34.615 0.00 0.00 40.22 1.40
3538 6490 5.993748 AAATAACACGGGATGACCAAAAT 57.006 34.783 0.00 0.00 40.22 1.82
3539 6491 5.533482 CAAAATAACACGGGATGACCAAAA 58.467 37.500 0.00 0.00 40.22 2.44
3540 6492 4.559704 GCAAAATAACACGGGATGACCAAA 60.560 41.667 0.00 0.00 40.22 3.28
3541 6493 3.057174 GCAAAATAACACGGGATGACCAA 60.057 43.478 0.00 0.00 40.22 3.67
3542 6494 2.490115 GCAAAATAACACGGGATGACCA 59.510 45.455 0.00 0.00 40.22 4.02
3543 6495 2.477189 CGCAAAATAACACGGGATGACC 60.477 50.000 0.00 0.00 0.00 4.02
3544 6496 2.780993 CGCAAAATAACACGGGATGAC 58.219 47.619 0.00 0.00 0.00 3.06
3545 6497 1.131504 GCGCAAAATAACACGGGATGA 59.868 47.619 0.30 0.00 0.00 2.92
3546 6498 1.544686 GCGCAAAATAACACGGGATG 58.455 50.000 0.30 0.00 0.00 3.51
3547 6499 0.454196 GGCGCAAAATAACACGGGAT 59.546 50.000 10.83 0.00 0.00 3.85
3548 6500 1.587933 GGGCGCAAAATAACACGGGA 61.588 55.000 10.83 0.00 0.00 5.14
3549 6501 1.153920 GGGCGCAAAATAACACGGG 60.154 57.895 10.83 0.00 0.00 5.28
3550 6502 1.513160 CGGGCGCAAAATAACACGG 60.513 57.895 10.83 0.00 0.00 4.94
3551 6503 2.149599 GCGGGCGCAAAATAACACG 61.150 57.895 10.83 0.00 41.49 4.49
3552 6504 3.761995 GCGGGCGCAAAATAACAC 58.238 55.556 10.83 0.00 41.49 3.32
3569 6521 3.197790 CACGGGAATCGCCAGCTG 61.198 66.667 6.78 6.78 43.89 4.24
3570 6522 4.473520 CCACGGGAATCGCCAGCT 62.474 66.667 0.00 0.00 43.89 4.24
3583 6535 1.154225 GAGCATTTTCACCGCCACG 60.154 57.895 0.00 0.00 0.00 4.94
3584 6536 1.154225 CGAGCATTTTCACCGCCAC 60.154 57.895 0.00 0.00 0.00 5.01
3585 6537 2.976840 GCGAGCATTTTCACCGCCA 61.977 57.895 0.00 0.00 39.97 5.69
3586 6538 2.202479 GCGAGCATTTTCACCGCC 60.202 61.111 0.00 0.00 39.97 6.13
3587 6539 2.202479 GGCGAGCATTTTCACCGC 60.202 61.111 0.00 0.00 44.45 5.68
3588 6540 0.171007 ATTGGCGAGCATTTTCACCG 59.829 50.000 0.00 0.00 0.00 4.94
3589 6541 3.502191 TTATTGGCGAGCATTTTCACC 57.498 42.857 0.00 0.00 0.00 4.02
3590 6542 5.788467 CAAATTATTGGCGAGCATTTTCAC 58.212 37.500 0.00 0.00 32.69 3.18
3604 6556 1.533756 CGAGGGCACGCCAAATTATTG 60.534 52.381 10.83 0.00 37.98 1.90
3605 6557 0.738389 CGAGGGCACGCCAAATTATT 59.262 50.000 10.83 0.00 37.98 1.40
3606 6558 1.101049 CCGAGGGCACGCCAAATTAT 61.101 55.000 10.83 0.00 37.98 1.28
3607 6559 1.747367 CCGAGGGCACGCCAAATTA 60.747 57.895 10.83 0.00 37.98 1.40
3608 6560 3.061848 CCGAGGGCACGCCAAATT 61.062 61.111 10.83 0.00 37.98 1.82
3609 6561 3.860930 AACCGAGGGCACGCCAAAT 62.861 57.895 10.83 0.00 37.98 2.32
3610 6562 4.572571 AACCGAGGGCACGCCAAA 62.573 61.111 10.83 0.00 37.98 3.28
3611 6563 4.572571 AAACCGAGGGCACGCCAA 62.573 61.111 10.83 0.00 37.98 4.52
3621 6573 4.697756 TCGCCCTGCCAAACCGAG 62.698 66.667 0.00 0.00 0.00 4.63
3622 6574 4.697756 CTCGCCCTGCCAAACCGA 62.698 66.667 0.00 0.00 0.00 4.69
3625 6577 4.043200 GTGCTCGCCCTGCCAAAC 62.043 66.667 0.00 0.00 0.00 2.93
3639 6591 1.212751 GTTTGGATTGAGCCCGTGC 59.787 57.895 0.00 0.00 37.95 5.34
3640 6592 0.523072 CTGTTTGGATTGAGCCCGTG 59.477 55.000 0.00 0.00 0.00 4.94
3641 6593 1.244019 GCTGTTTGGATTGAGCCCGT 61.244 55.000 0.00 0.00 0.00 5.28
3642 6594 1.508088 GCTGTTTGGATTGAGCCCG 59.492 57.895 0.00 0.00 0.00 6.13
3643 6595 1.893062 GGCTGTTTGGATTGAGCCC 59.107 57.895 0.00 0.00 44.54 5.19
3645 6597 1.607801 GGGGGCTGTTTGGATTGAGC 61.608 60.000 0.00 0.00 0.00 4.26
3646 6598 0.040204 AGGGGGCTGTTTGGATTGAG 59.960 55.000 0.00 0.00 0.00 3.02
3647 6599 1.377690 TAGGGGGCTGTTTGGATTGA 58.622 50.000 0.00 0.00 0.00 2.57
3648 6600 2.230130 TTAGGGGGCTGTTTGGATTG 57.770 50.000 0.00 0.00 0.00 2.67
3649 6601 2.587307 AGATTAGGGGGCTGTTTGGATT 59.413 45.455 0.00 0.00 0.00 3.01
3650 6602 2.217776 AGATTAGGGGGCTGTTTGGAT 58.782 47.619 0.00 0.00 0.00 3.41
3651 6603 1.681229 AGATTAGGGGGCTGTTTGGA 58.319 50.000 0.00 0.00 0.00 3.53
3652 6604 2.509964 AGTAGATTAGGGGGCTGTTTGG 59.490 50.000 0.00 0.00 0.00 3.28
3653 6605 3.545703 CAGTAGATTAGGGGGCTGTTTG 58.454 50.000 0.00 0.00 0.00 2.93
3654 6606 2.092375 GCAGTAGATTAGGGGGCTGTTT 60.092 50.000 0.00 0.00 0.00 2.83
3655 6607 1.490910 GCAGTAGATTAGGGGGCTGTT 59.509 52.381 0.00 0.00 0.00 3.16
3656 6608 1.132500 GCAGTAGATTAGGGGGCTGT 58.868 55.000 0.00 0.00 0.00 4.40
3657 6609 1.131638 TGCAGTAGATTAGGGGGCTG 58.868 55.000 0.00 0.00 0.00 4.85
3658 6610 1.132500 GTGCAGTAGATTAGGGGGCT 58.868 55.000 0.00 0.00 0.00 5.19
3659 6611 0.108774 GGTGCAGTAGATTAGGGGGC 59.891 60.000 0.00 0.00 0.00 5.80
3660 6612 1.417890 CAGGTGCAGTAGATTAGGGGG 59.582 57.143 0.00 0.00 0.00 5.40
3661 6613 2.119495 ACAGGTGCAGTAGATTAGGGG 58.881 52.381 0.00 0.00 0.00 4.79
3662 6614 2.158900 CCACAGGTGCAGTAGATTAGGG 60.159 54.545 0.00 0.00 0.00 3.53
3719 6671 2.177451 TGGCATCATACCACCATGGATT 59.823 45.455 21.47 4.11 40.96 3.01
3732 6684 6.534475 TTTTAGAAGCTTGAATGGCATCAT 57.466 33.333 2.10 0.00 34.56 2.45
3733 6685 5.981088 TTTTAGAAGCTTGAATGGCATCA 57.019 34.783 2.10 0.00 30.99 3.07
3806 6758 0.958822 ACGTTTGGAGTTTGGGCATC 59.041 50.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.