Multiple sequence alignment - TraesCS7A01G540500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G540500 chr7A 100.000 3894 0 0 1 3894 717393532 717397425 0.000000e+00 7191.0
1 TraesCS7A01G540500 chr7A 87.644 1044 91 21 2562 3591 717381963 717382982 0.000000e+00 1179.0
2 TraesCS7A01G540500 chr7A 85.714 1022 106 25 2597 3591 717470959 717471967 0.000000e+00 1042.0
3 TraesCS7A01G540500 chr7A 81.652 1041 121 25 990 1970 717257395 717258425 0.000000e+00 800.0
4 TraesCS7A01G540500 chr7A 86.968 729 62 18 2534 3254 717260537 717261240 0.000000e+00 789.0
5 TraesCS7A01G540500 chr7A 81.068 1030 130 21 990 1967 717379861 717380877 0.000000e+00 761.0
6 TraesCS7A01G540500 chr7A 78.758 1031 137 35 990 1969 717468482 717469481 1.990000e-172 616.0
7 TraesCS7A01G540500 chr7A 83.864 440 65 1 986 1425 717593338 717593771 7.780000e-112 414.0
8 TraesCS7A01G540500 chr7A 79.004 562 109 8 988 1544 717074769 717075326 3.670000e-100 375.0
9 TraesCS7A01G540500 chr7A 88.852 305 32 2 612 916 717593004 717593306 1.320000e-99 374.0
10 TraesCS7A01G540500 chr7A 84.426 366 40 9 1400 1756 717593776 717594133 1.040000e-90 344.0
11 TraesCS7A01G540500 chr7A 81.139 281 51 2 638 916 717379301 717379581 1.410000e-54 224.0
12 TraesCS7A01G540500 chr7B 92.774 1896 97 22 1 1862 717537694 717535805 0.000000e+00 2706.0
13 TraesCS7A01G540500 chr7B 88.662 1076 89 20 2534 3591 717885092 717884032 0.000000e+00 1280.0
14 TraesCS7A01G540500 chr7B 84.284 999 125 17 554 1544 717631769 717630795 0.000000e+00 946.0
15 TraesCS7A01G540500 chr7B 86.469 776 61 18 2579 3349 717533222 717532486 0.000000e+00 811.0
16 TraesCS7A01G540500 chr7B 81.250 1024 128 24 996 1967 717886895 717885884 0.000000e+00 769.0
17 TraesCS7A01G540500 chr7B 91.497 541 37 8 3056 3591 718086796 718086260 0.000000e+00 736.0
18 TraesCS7A01G540500 chr7B 79.406 1078 139 52 2535 3586 717550793 717549773 0.000000e+00 684.0
19 TraesCS7A01G540500 chr7B 81.658 736 115 13 669 1391 717793804 717794532 9.320000e-166 593.0
20 TraesCS7A01G540500 chr7B 80.400 750 103 24 2536 3273 719472735 719473452 7.410000e-147 531.0
21 TraesCS7A01G540500 chr7B 77.146 897 154 34 657 1544 718436359 718435505 1.270000e-129 473.0
22 TraesCS7A01G540500 chr7B 86.000 400 56 0 992 1391 717817954 717818353 2.780000e-116 429.0
23 TraesCS7A01G540500 chr7B 74.294 354 60 20 2705 3040 720026621 720026961 1.900000e-23 121.0
24 TraesCS7A01G540500 chr7B 95.556 45 1 1 2214 2257 719470993 719471037 1.940000e-08 71.3
25 TraesCS7A01G540500 chr7D 86.121 1405 171 12 137 1529 621878832 621880224 0.000000e+00 1493.0
26 TraesCS7A01G540500 chr7D 87.857 700 63 13 2901 3591 621822033 621822719 0.000000e+00 802.0
27 TraesCS7A01G540500 chr7D 88.596 456 39 6 2824 3274 621848849 621849296 3.420000e-150 542.0
28 TraesCS7A01G540500 chr7D 86.258 473 62 3 968 1440 3377575 3378044 9.650000e-141 510.0
29 TraesCS7A01G540500 chr7D 91.234 308 22 2 3590 3894 515221129 515220824 7.780000e-112 414.0
30 TraesCS7A01G540500 chr7D 91.176 306 24 2 3590 3894 62150371 62150674 2.800000e-111 412.0
31 TraesCS7A01G540500 chr7D 82.207 444 31 15 1569 1967 621819582 621820022 4.820000e-89 339.0
32 TraesCS7A01G540500 chr7D 87.452 263 21 6 2552 2814 621821781 621822031 3.810000e-75 292.0
33 TraesCS7A01G540500 chr7D 89.881 168 15 2 3392 3557 621849346 621849513 8.470000e-52 215.0
34 TraesCS7A01G540500 chr6B 92.283 311 21 3 3585 3894 182454030 182453722 4.620000e-119 438.0
35 TraesCS7A01G540500 chr6D 92.131 305 22 1 3590 3894 166773133 166773435 2.780000e-116 429.0
36 TraesCS7A01G540500 chr1D 92.131 305 22 2 3590 3894 108335704 108335402 2.780000e-116 429.0
37 TraesCS7A01G540500 chr3D 91.475 305 24 1 3590 3894 479746399 479746701 6.020000e-113 418.0
38 TraesCS7A01G540500 chr2D 91.475 305 24 2 3590 3894 387732798 387733100 6.020000e-113 418.0
39 TraesCS7A01G540500 chr6A 91.447 304 24 2 3591 3894 548435248 548434947 2.160000e-112 416.0
40 TraesCS7A01G540500 chr4D 91.176 306 23 3 3590 3894 412678119 412678421 2.800000e-111 412.0
41 TraesCS7A01G540500 chrUn 78.534 573 113 9 978 1544 289818477 289819045 6.150000e-98 368.0
42 TraesCS7A01G540500 chrUn 74.769 325 55 18 2734 3040 241070991 241070676 1.900000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G540500 chr7A 717393532 717397425 3893 False 7191.000000 7191 100.000000 1 3894 1 chr7A.!!$F2 3893
1 TraesCS7A01G540500 chr7A 717468482 717471967 3485 False 829.000000 1042 82.236000 990 3591 2 chr7A.!!$F5 2601
2 TraesCS7A01G540500 chr7A 717257395 717261240 3845 False 794.500000 800 84.310000 990 3254 2 chr7A.!!$F3 2264
3 TraesCS7A01G540500 chr7A 717379301 717382982 3681 False 721.333333 1179 83.283667 638 3591 3 chr7A.!!$F4 2953
4 TraesCS7A01G540500 chr7A 717593004 717594133 1129 False 377.333333 414 85.714000 612 1756 3 chr7A.!!$F6 1144
5 TraesCS7A01G540500 chr7A 717074769 717075326 557 False 375.000000 375 79.004000 988 1544 1 chr7A.!!$F1 556
6 TraesCS7A01G540500 chr7B 717532486 717537694 5208 True 1758.500000 2706 89.621500 1 3349 2 chr7B.!!$R5 3348
7 TraesCS7A01G540500 chr7B 717884032 717886895 2863 True 1024.500000 1280 84.956000 996 3591 2 chr7B.!!$R6 2595
8 TraesCS7A01G540500 chr7B 717630795 717631769 974 True 946.000000 946 84.284000 554 1544 1 chr7B.!!$R2 990
9 TraesCS7A01G540500 chr7B 718086260 718086796 536 True 736.000000 736 91.497000 3056 3591 1 chr7B.!!$R3 535
10 TraesCS7A01G540500 chr7B 717549773 717550793 1020 True 684.000000 684 79.406000 2535 3586 1 chr7B.!!$R1 1051
11 TraesCS7A01G540500 chr7B 717793804 717794532 728 False 593.000000 593 81.658000 669 1391 1 chr7B.!!$F1 722
12 TraesCS7A01G540500 chr7B 718435505 718436359 854 True 473.000000 473 77.146000 657 1544 1 chr7B.!!$R4 887
13 TraesCS7A01G540500 chr7B 719470993 719473452 2459 False 301.150000 531 87.978000 2214 3273 2 chr7B.!!$F4 1059
14 TraesCS7A01G540500 chr7D 621878832 621880224 1392 False 1493.000000 1493 86.121000 137 1529 1 chr7D.!!$F3 1392
15 TraesCS7A01G540500 chr7D 621819582 621822719 3137 False 477.666667 802 85.838667 1569 3591 3 chr7D.!!$F4 2022
16 TraesCS7A01G540500 chr7D 621848849 621849513 664 False 378.500000 542 89.238500 2824 3557 2 chr7D.!!$F5 733
17 TraesCS7A01G540500 chrUn 289818477 289819045 568 False 368.000000 368 78.534000 978 1544 1 chrUn.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 1.052124 TTGGTTGTCCACGAGGAGGT 61.052 55.0 0.21 0.0 46.92 3.85 F
1975 2436 0.110486 AACGTCAGAAAGGCCATGGT 59.890 50.0 14.67 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 4972 0.606401 ATGTCAGCCAAGTTCGTGGG 60.606 55.0 6.87 0.0 39.26 4.61 R
2920 7692 0.398696 AACCAACCGACTGCACCATA 59.601 50.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.661718 GTTTCTTCCCTTGGTTGTCCA 58.338 47.619 0.00 0.00 42.66 4.02
38 39 2.358322 TTCTTCCCTTGGTTGTCCAC 57.642 50.000 0.00 0.00 44.22 4.02
46 47 1.052124 TTGGTTGTCCACGAGGAGGT 61.052 55.000 0.21 0.00 46.92 3.85
115 116 6.070881 ACTCAGTTGAGAATTGAGATGCTACT 60.071 38.462 15.63 0.00 45.11 2.57
398 406 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
400 408 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
402 410 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
405 413 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
406 414 4.078922 TCTCTCTCTCTCTCTCTCTCTCCT 60.079 50.000 0.00 0.00 0.00 3.69
708 724 2.769209 ACTTAGGAGATGGAGGCACAT 58.231 47.619 0.00 0.00 0.00 3.21
806 822 3.434309 CAGGAAGTTGACCCATCCAAAT 58.566 45.455 0.00 0.00 34.30 2.32
1039 1276 4.244066 CTCGGAAGATGATATGCTTGGAG 58.756 47.826 0.00 0.00 40.84 3.86
1056 1293 1.517242 GAGTTGAGCCACTCCAACTG 58.483 55.000 11.81 0.00 37.78 3.16
1064 1301 1.615392 GCCACTCCAACTGCATTTTCT 59.385 47.619 0.00 0.00 0.00 2.52
1077 1314 8.389603 CAACTGCATTTTCTTTTTGAGCTTAAA 58.610 29.630 0.00 0.00 0.00 1.52
1112 1349 2.095059 GTGCACTTCAGCTAACCAATGG 60.095 50.000 10.32 0.00 34.99 3.16
1131 1368 4.574674 TGGGACAGATTCTTACATTGCT 57.425 40.909 0.00 0.00 0.00 3.91
1158 1395 5.687166 ACATTGAAAATACGAGTCCCCTA 57.313 39.130 0.00 0.00 0.00 3.53
1166 1403 7.289317 TGAAAATACGAGTCCCCTATCATACTT 59.711 37.037 0.00 0.00 0.00 2.24
1185 1422 1.893808 CACACAGCCGCAGAAAGGT 60.894 57.895 0.00 0.00 0.00 3.50
1189 1426 1.131126 CACAGCCGCAGAAAGGTATTG 59.869 52.381 0.00 0.00 0.00 1.90
1231 1468 4.216257 GGTGTGTTGAGATAACAATGCAGT 59.784 41.667 0.00 0.00 32.36 4.40
1254 1491 2.111251 GGCAAGGCTCCGGGATAC 59.889 66.667 0.00 0.00 0.00 2.24
1259 1496 2.357517 GGCTCCGGGATACATGCG 60.358 66.667 0.00 0.00 39.74 4.73
1391 1634 4.808364 CGTGAATTTGGATGTGGTTTTTGT 59.192 37.500 0.00 0.00 0.00 2.83
1626 1915 4.928615 AGAGAGATCGCTTTCTTCAACAAG 59.071 41.667 0.00 0.00 32.05 3.16
1830 2164 3.699894 AGCCAGAGACGCAGGTGG 61.700 66.667 0.00 0.00 0.00 4.61
1936 2397 4.690748 GTGCAAGTAAGAGTAACAGCATGA 59.309 41.667 0.00 0.00 39.69 3.07
1940 2401 4.499183 AGTAAGAGTAACAGCATGACAGC 58.501 43.478 0.00 0.00 39.69 4.40
1948 2409 6.381801 AGTAACAGCATGACAGCAATTTAAC 58.618 36.000 0.00 0.00 39.69 2.01
1969 2430 5.857822 ACTAATACAAACGTCAGAAAGGC 57.142 39.130 0.00 0.00 0.00 4.35
1972 2433 1.981256 ACAAACGTCAGAAAGGCCAT 58.019 45.000 5.01 0.00 0.00 4.40
1975 2436 0.110486 AACGTCAGAAAGGCCATGGT 59.890 50.000 14.67 0.00 0.00 3.55
1976 2437 0.981183 ACGTCAGAAAGGCCATGGTA 59.019 50.000 14.67 0.00 0.00 3.25
1979 4889 2.419990 CGTCAGAAAGGCCATGGTATCA 60.420 50.000 14.67 0.00 0.00 2.15
1983 4895 3.763360 CAGAAAGGCCATGGTATCAACAA 59.237 43.478 14.67 0.00 0.00 2.83
2005 4929 1.225704 GCATCTTGGTCTCCCTGGG 59.774 63.158 6.33 6.33 0.00 4.45
2007 4931 2.003548 ATCTTGGTCTCCCTGGGCC 61.004 63.158 8.22 4.17 0.00 5.80
2008 4932 2.788230 ATCTTGGTCTCCCTGGGCCA 62.788 60.000 8.22 5.85 0.00 5.36
2011 4935 4.035102 GGTCTCCCTGGGCCACAC 62.035 72.222 8.22 1.23 0.00 3.82
2040 4972 2.866028 CAGCCTCTTTGTCAGCGC 59.134 61.111 0.00 0.00 0.00 5.92
2060 4992 1.338674 CCCACGAACTTGGCTGACATA 60.339 52.381 0.00 0.00 35.00 2.29
2091 5023 2.436824 GGAGGAAGCCGAACAGCC 60.437 66.667 0.00 0.00 0.00 4.85
2092 5024 2.665603 GAGGAAGCCGAACAGCCT 59.334 61.111 0.00 0.00 0.00 4.58
2093 5025 1.448717 GAGGAAGCCGAACAGCCTC 60.449 63.158 0.00 0.00 38.45 4.70
2095 5027 2.048127 GAAGCCGAACAGCCTCGT 60.048 61.111 0.00 0.00 37.11 4.18
2100 5042 1.594293 CCGAACAGCCTCGTTGTGT 60.594 57.895 0.00 0.00 37.11 3.72
2106 5048 4.980805 GCCTCGTTGTGTCCGCCA 62.981 66.667 0.00 0.00 0.00 5.69
2107 5049 2.047274 CCTCGTTGTGTCCGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
2121 5063 2.434884 CCATTGCCGACGAGCTGT 60.435 61.111 0.00 0.00 0.00 4.40
2138 5084 1.892391 GTAGGCGGTGCAATAGGCC 60.892 63.158 9.79 9.79 45.91 5.19
2153 5100 2.841988 GCCTCCTCGCCTCCTCAT 60.842 66.667 0.00 0.00 0.00 2.90
2155 5102 2.206536 CCTCCTCGCCTCCTCATCC 61.207 68.421 0.00 0.00 0.00 3.51
2158 5105 2.444706 CTCGCCTCCTCATCCCCA 60.445 66.667 0.00 0.00 0.00 4.96
2161 5118 2.669133 CGCCTCCTCATCCCCACAA 61.669 63.158 0.00 0.00 0.00 3.33
2167 5124 3.605749 CTCATCCCCACAACGCCGT 62.606 63.158 0.00 0.00 0.00 5.68
2209 5167 2.744494 GCATTTTGGGTTTGAAGTGGCA 60.744 45.455 0.00 0.00 0.00 4.92
2212 5170 1.733402 TTGGGTTTGAAGTGGCAGCG 61.733 55.000 0.00 0.00 0.00 5.18
2214 5172 2.050077 GTTTGAAGTGGCAGCGGC 60.050 61.111 0.00 0.00 40.13 6.53
2225 5183 0.179084 GGCAGCGGCAGAAGTACATA 60.179 55.000 11.88 0.00 43.71 2.29
2266 6594 2.242572 CGCATCATGTCCTGCTCCG 61.243 63.158 13.13 0.00 36.23 4.63
2268 6596 0.745845 GCATCATGTCCTGCTCCGTT 60.746 55.000 9.42 0.00 35.49 4.44
2291 6619 2.492088 CCATGAAGGTCACAGACGACTA 59.508 50.000 0.00 0.00 36.12 2.59
2292 6620 3.056821 CCATGAAGGTCACAGACGACTAA 60.057 47.826 0.00 0.00 36.12 2.24
2314 6643 1.298339 GACATGTTTATGCCGCCGC 60.298 57.895 0.00 0.00 37.85 6.53
2315 6644 2.026014 CATGTTTATGCCGCCGCC 59.974 61.111 0.00 0.00 0.00 6.13
2316 6645 3.582120 ATGTTTATGCCGCCGCCG 61.582 61.111 0.00 0.00 0.00 6.46
2318 6647 2.891448 GTTTATGCCGCCGCCGTA 60.891 61.111 0.00 0.00 0.00 4.02
2342 6671 1.421268 ACTGAAGTCATGCCAACTCCA 59.579 47.619 0.00 0.00 0.00 3.86
2346 6711 0.773644 AGTCATGCCAACTCCAACCT 59.226 50.000 0.00 0.00 0.00 3.50
2367 6732 1.517257 GATGACGTGCCTCTCACCG 60.517 63.158 0.00 0.00 42.69 4.94
2492 6992 3.176297 CTTGGGGGTGGTTGCCTA 58.824 61.111 0.00 0.00 0.00 3.93
2511 7130 4.633596 GCGCGATGATTCACGGCG 62.634 66.667 21.95 21.95 34.42 6.46
2512 7131 3.254654 CGCGATGATTCACGGCGT 61.255 61.111 19.39 6.77 0.00 5.68
2513 7132 2.798501 CGCGATGATTCACGGCGTT 61.799 57.895 11.19 0.00 0.00 4.84
2514 7133 1.296867 GCGATGATTCACGGCGTTG 60.297 57.895 11.19 6.46 0.00 4.10
2515 7134 1.966493 GCGATGATTCACGGCGTTGT 61.966 55.000 11.19 0.00 0.00 3.32
2516 7135 0.442310 CGATGATTCACGGCGTTGTT 59.558 50.000 11.19 0.00 0.00 2.83
2517 7136 1.656594 CGATGATTCACGGCGTTGTTA 59.343 47.619 11.19 0.00 0.00 2.41
2520 7139 2.418692 TGATTCACGGCGTTGTTATGT 58.581 42.857 11.19 0.00 0.00 2.29
2521 7140 2.158645 TGATTCACGGCGTTGTTATGTG 59.841 45.455 11.19 0.00 0.00 3.21
2522 7141 1.584175 TTCACGGCGTTGTTATGTGT 58.416 45.000 11.19 0.00 32.55 3.72
2523 7142 1.141645 TCACGGCGTTGTTATGTGTC 58.858 50.000 11.19 0.00 32.55 3.67
2524 7143 0.862490 CACGGCGTTGTTATGTGTCA 59.138 50.000 11.19 0.00 0.00 3.58
2525 7144 0.863144 ACGGCGTTGTTATGTGTCAC 59.137 50.000 6.77 0.00 0.00 3.67
2526 7145 0.179260 CGGCGTTGTTATGTGTCACG 60.179 55.000 0.00 0.00 0.00 4.35
2527 7146 1.141645 GGCGTTGTTATGTGTCACGA 58.858 50.000 0.00 0.00 0.00 4.35
2528 7147 1.136446 GGCGTTGTTATGTGTCACGAC 60.136 52.381 0.00 0.00 0.00 4.34
2529 7148 2.464594 CGTTGTTATGTGTCACGACG 57.535 50.000 0.00 0.00 42.72 5.12
2530 7149 1.123576 CGTTGTTATGTGTCACGACGG 59.876 52.381 0.00 0.00 44.01 4.79
2531 7150 1.136446 GTTGTTATGTGTCACGACGGC 60.136 52.381 0.00 0.00 0.00 5.68
2532 7151 1.004785 TGTTATGTGTCACGACGGCG 61.005 55.000 10.39 10.39 44.79 6.46
2533 7152 1.444724 TTATGTGTCACGACGGCGG 60.445 57.895 18.49 3.71 43.17 6.13
2534 7153 2.822418 TTATGTGTCACGACGGCGGG 62.822 60.000 18.49 13.17 43.89 6.13
2540 7159 4.728102 CACGACGGCGGGCAAGTA 62.728 66.667 18.49 0.00 43.17 2.24
2541 7160 3.993584 ACGACGGCGGGCAAGTAA 61.994 61.111 18.49 0.00 43.17 2.24
2542 7161 3.186047 CGACGGCGGGCAAGTAAG 61.186 66.667 13.24 0.00 0.00 2.34
2543 7162 2.047560 GACGGCGGGCAAGTAAGT 60.048 61.111 13.24 0.00 0.00 2.24
2544 7163 2.358247 ACGGCGGGCAAGTAAGTG 60.358 61.111 13.24 0.00 0.00 3.16
2545 7164 2.358247 CGGCGGGCAAGTAAGTGT 60.358 61.111 0.00 0.00 0.00 3.55
2564 7183 3.906008 GTGTTTATGTGTCACGACATTGC 59.094 43.478 2.72 0.00 43.97 3.56
2614 7247 4.464947 AGAACAAAAGAGGGTTCCTTCTG 58.535 43.478 4.29 0.00 43.37 3.02
2645 7278 9.295825 ACTCTACTCTGTAAGATAGATGATTGG 57.704 37.037 0.00 0.00 45.62 3.16
2646 7279 9.513906 CTCTACTCTGTAAGATAGATGATTGGA 57.486 37.037 0.00 0.00 45.62 3.53
2647 7280 9.513906 TCTACTCTGTAAGATAGATGATTGGAG 57.486 37.037 0.00 0.00 45.62 3.86
2648 7281 9.513906 CTACTCTGTAAGATAGATGATTGGAGA 57.486 37.037 0.00 0.00 45.62 3.71
2649 7282 8.954834 ACTCTGTAAGATAGATGATTGGAGAT 57.045 34.615 0.00 0.00 45.62 2.75
2650 7283 8.805175 ACTCTGTAAGATAGATGATTGGAGATG 58.195 37.037 0.00 0.00 45.62 2.90
2651 7284 7.609960 TCTGTAAGATAGATGATTGGAGATGC 58.390 38.462 0.00 0.00 38.67 3.91
2656 7299 7.075851 AGATAGATGATTGGAGATGCTCAAA 57.924 36.000 0.00 0.00 31.08 2.69
2701 7463 5.811399 TTCATTTAGGAGTGTAATTGCGG 57.189 39.130 0.00 0.00 0.00 5.69
2783 7548 5.305139 TGTCTGTCATCTTTGATGCATTG 57.695 39.130 0.00 0.00 33.56 2.82
2784 7549 5.005094 TGTCTGTCATCTTTGATGCATTGA 58.995 37.500 0.00 0.00 33.56 2.57
2785 7550 5.106436 TGTCTGTCATCTTTGATGCATTGAC 60.106 40.000 16.54 16.54 33.56 3.18
2806 7573 0.179171 ACGACGTAGCAGACAATCCG 60.179 55.000 0.00 0.00 0.00 4.18
2920 7692 7.121759 CAGGAATGTTCTTTGGTCAGATTACAT 59.878 37.037 0.00 0.00 29.16 2.29
2924 7699 7.864108 TGTTCTTTGGTCAGATTACATATGG 57.136 36.000 7.80 0.00 0.00 2.74
2940 7715 0.398696 ATGGTGCAGTCGGTTGGTTA 59.601 50.000 0.00 0.00 0.00 2.85
2977 7760 4.093998 CACATCAGACAGCCATTGTAAGTC 59.906 45.833 0.00 0.00 41.05 3.01
2986 7771 4.813161 CAGCCATTGTAAGTCTGTAGGATG 59.187 45.833 0.00 0.00 0.00 3.51
2994 7783 6.620429 TGTAAGTCTGTAGGATGATATGGGA 58.380 40.000 0.00 0.00 0.00 4.37
3036 7825 4.543692 CTTTTCAAGTCAGTGCATTGGAG 58.456 43.478 9.56 0.00 0.00 3.86
3090 7892 2.606272 GGATTGTAACCGGTCACGAATC 59.394 50.000 8.04 14.95 44.60 2.52
3167 7981 8.773404 TTACTTCTTCTGCTAGTATTTTGGAC 57.227 34.615 0.00 0.00 0.00 4.02
3188 8002 6.042552 TGGACAAAGAAAGAAAATTATGGCCA 59.957 34.615 8.56 8.56 42.24 5.36
3315 8134 0.249657 GTGATGGTCGATGGGAGCTC 60.250 60.000 4.71 4.71 43.60 4.09
3349 8168 1.130777 AGTTTTTGCCCACAGCCAAT 58.869 45.000 0.00 0.00 42.71 3.16
3492 8317 9.529325 GGCAAATATACCAATCTTTTCTTTACC 57.471 33.333 0.00 0.00 0.00 2.85
3557 8391 3.508762 GTCGCTTCGATTAAGGTCTCAA 58.491 45.455 0.00 0.00 38.42 3.02
3561 8395 4.806247 CGCTTCGATTAAGGTCTCAAAGAT 59.194 41.667 0.00 0.00 35.58 2.40
3591 8427 6.366604 GGTAAGCTCTCTGACTTCTTTGTTAC 59.633 42.308 0.00 0.00 0.00 2.50
3592 8428 5.799827 AGCTCTCTGACTTCTTTGTTACT 57.200 39.130 0.00 0.00 0.00 2.24
3593 8429 5.778862 AGCTCTCTGACTTCTTTGTTACTC 58.221 41.667 0.00 0.00 0.00 2.59
3594 8430 4.926832 GCTCTCTGACTTCTTTGTTACTCC 59.073 45.833 0.00 0.00 0.00 3.85
3595 8431 5.470047 TCTCTGACTTCTTTGTTACTCCC 57.530 43.478 0.00 0.00 0.00 4.30
3596 8432 5.148502 TCTCTGACTTCTTTGTTACTCCCT 58.851 41.667 0.00 0.00 0.00 4.20
3597 8433 5.244178 TCTCTGACTTCTTTGTTACTCCCTC 59.756 44.000 0.00 0.00 0.00 4.30
3598 8434 4.283722 TCTGACTTCTTTGTTACTCCCTCC 59.716 45.833 0.00 0.00 0.00 4.30
3599 8435 3.971305 TGACTTCTTTGTTACTCCCTCCA 59.029 43.478 0.00 0.00 0.00 3.86
3600 8436 4.597507 TGACTTCTTTGTTACTCCCTCCAT 59.402 41.667 0.00 0.00 0.00 3.41
3601 8437 5.073144 TGACTTCTTTGTTACTCCCTCCATT 59.927 40.000 0.00 0.00 0.00 3.16
3602 8438 5.953571 ACTTCTTTGTTACTCCCTCCATTT 58.046 37.500 0.00 0.00 0.00 2.32
3603 8439 6.373759 ACTTCTTTGTTACTCCCTCCATTTT 58.626 36.000 0.00 0.00 0.00 1.82
3604 8440 6.839134 ACTTCTTTGTTACTCCCTCCATTTTT 59.161 34.615 0.00 0.00 0.00 1.94
3605 8441 8.002459 ACTTCTTTGTTACTCCCTCCATTTTTA 58.998 33.333 0.00 0.00 0.00 1.52
3606 8442 8.950007 TTCTTTGTTACTCCCTCCATTTTTAT 57.050 30.769 0.00 0.00 0.00 1.40
3615 8451 7.004691 ACTCCCTCCATTTTTATATACAAGGC 58.995 38.462 0.00 0.00 0.00 4.35
3616 8452 6.311735 TCCCTCCATTTTTATATACAAGGCC 58.688 40.000 0.00 0.00 0.00 5.19
3617 8453 6.074648 CCCTCCATTTTTATATACAAGGCCA 58.925 40.000 5.01 0.00 0.00 5.36
3618 8454 6.725834 CCCTCCATTTTTATATACAAGGCCAT 59.274 38.462 5.01 0.00 0.00 4.40
3619 8455 7.893302 CCCTCCATTTTTATATACAAGGCCATA 59.107 37.037 5.01 0.00 0.00 2.74
3620 8456 9.308000 CCTCCATTTTTATATACAAGGCCATAA 57.692 33.333 5.01 0.00 0.00 1.90
3632 8468 6.909550 ACAAGGCCATAAACTCAAATTACA 57.090 33.333 5.01 0.00 0.00 2.41
3633 8469 6.924111 ACAAGGCCATAAACTCAAATTACAG 58.076 36.000 5.01 0.00 0.00 2.74
3634 8470 6.071391 ACAAGGCCATAAACTCAAATTACAGG 60.071 38.462 5.01 0.00 0.00 4.00
3635 8471 5.580022 AGGCCATAAACTCAAATTACAGGT 58.420 37.500 5.01 0.00 0.00 4.00
3636 8472 6.727394 AGGCCATAAACTCAAATTACAGGTA 58.273 36.000 5.01 0.00 0.00 3.08
3637 8473 6.602009 AGGCCATAAACTCAAATTACAGGTAC 59.398 38.462 5.01 0.00 0.00 3.34
3638 8474 6.376018 GGCCATAAACTCAAATTACAGGTACA 59.624 38.462 0.00 0.00 0.00 2.90
3639 8475 7.094118 GGCCATAAACTCAAATTACAGGTACAA 60.094 37.037 0.00 0.00 0.00 2.41
3640 8476 8.301002 GCCATAAACTCAAATTACAGGTACAAA 58.699 33.333 0.00 0.00 0.00 2.83
3641 8477 9.840427 CCATAAACTCAAATTACAGGTACAAAG 57.160 33.333 0.00 0.00 0.00 2.77
3642 8478 9.840427 CATAAACTCAAATTACAGGTACAAAGG 57.160 33.333 0.00 0.00 0.00 3.11
3643 8479 7.891498 AAACTCAAATTACAGGTACAAAGGT 57.109 32.000 0.00 0.00 0.00 3.50
3644 8480 8.983702 AAACTCAAATTACAGGTACAAAGGTA 57.016 30.769 0.00 0.00 0.00 3.08
3645 8481 8.983702 AACTCAAATTACAGGTACAAAGGTAA 57.016 30.769 0.00 0.00 0.00 2.85
3646 8482 8.983702 ACTCAAATTACAGGTACAAAGGTAAA 57.016 30.769 0.00 0.00 30.41 2.01
3647 8483 9.411189 ACTCAAATTACAGGTACAAAGGTAAAA 57.589 29.630 0.00 0.00 30.41 1.52
3656 8492 8.643324 ACAGGTACAAAGGTAAAATTTAATGCA 58.357 29.630 0.00 0.00 0.00 3.96
3657 8493 9.651913 CAGGTACAAAGGTAAAATTTAATGCAT 57.348 29.630 0.00 0.00 0.00 3.96
3669 8505 7.832503 AAATTTAATGCATACTTGACAAGCC 57.167 32.000 15.24 2.43 0.00 4.35
3670 8506 5.973899 TTTAATGCATACTTGACAAGCCA 57.026 34.783 15.24 7.81 0.00 4.75
3671 8507 5.973899 TTAATGCATACTTGACAAGCCAA 57.026 34.783 15.24 1.68 0.00 4.52
3672 8508 6.528537 TTAATGCATACTTGACAAGCCAAT 57.471 33.333 15.24 4.01 0.00 3.16
3673 8509 5.410355 AATGCATACTTGACAAGCCAATT 57.590 34.783 15.24 5.88 0.00 2.32
3674 8510 4.870123 TGCATACTTGACAAGCCAATTT 57.130 36.364 15.24 0.00 0.00 1.82
3675 8511 5.212532 TGCATACTTGACAAGCCAATTTT 57.787 34.783 15.24 0.00 0.00 1.82
3676 8512 5.609423 TGCATACTTGACAAGCCAATTTTT 58.391 33.333 15.24 0.00 0.00 1.94
3677 8513 5.695816 TGCATACTTGACAAGCCAATTTTTC 59.304 36.000 15.24 0.00 0.00 2.29
3678 8514 5.928264 GCATACTTGACAAGCCAATTTTTCT 59.072 36.000 15.24 0.00 0.00 2.52
3679 8515 6.424812 GCATACTTGACAAGCCAATTTTTCTT 59.575 34.615 15.24 0.00 0.00 2.52
3680 8516 7.041848 GCATACTTGACAAGCCAATTTTTCTTT 60.042 33.333 15.24 0.00 0.00 2.52
3681 8517 8.829612 CATACTTGACAAGCCAATTTTTCTTTT 58.170 29.630 15.24 0.00 0.00 2.27
3682 8518 7.307493 ACTTGACAAGCCAATTTTTCTTTTC 57.693 32.000 15.24 0.00 0.00 2.29
3683 8519 6.878389 ACTTGACAAGCCAATTTTTCTTTTCA 59.122 30.769 15.24 0.00 0.00 2.69
3684 8520 7.553760 ACTTGACAAGCCAATTTTTCTTTTCAT 59.446 29.630 15.24 0.00 29.91 2.57
3685 8521 7.862512 TGACAAGCCAATTTTTCTTTTCATT 57.137 28.000 0.00 0.00 0.00 2.57
3686 8522 8.278729 TGACAAGCCAATTTTTCTTTTCATTT 57.721 26.923 0.00 0.00 0.00 2.32
3687 8523 9.388506 TGACAAGCCAATTTTTCTTTTCATTTA 57.611 25.926 0.00 0.00 0.00 1.40
3688 8524 9.650371 GACAAGCCAATTTTTCTTTTCATTTAC 57.350 29.630 0.00 0.00 0.00 2.01
3689 8525 8.620416 ACAAGCCAATTTTTCTTTTCATTTACC 58.380 29.630 0.00 0.00 0.00 2.85
3690 8526 7.420184 AGCCAATTTTTCTTTTCATTTACCG 57.580 32.000 0.00 0.00 0.00 4.02
3691 8527 7.213678 AGCCAATTTTTCTTTTCATTTACCGA 58.786 30.769 0.00 0.00 0.00 4.69
3692 8528 7.384932 AGCCAATTTTTCTTTTCATTTACCGAG 59.615 33.333 0.00 0.00 0.00 4.63
3693 8529 7.383843 GCCAATTTTTCTTTTCATTTACCGAGA 59.616 33.333 0.00 0.00 0.00 4.04
3694 8530 9.423061 CCAATTTTTCTTTTCATTTACCGAGAT 57.577 29.630 0.00 0.00 0.00 2.75
3705 8541 7.576750 TCATTTACCGAGATCATTAATACGC 57.423 36.000 0.00 0.00 0.00 4.42
3706 8542 7.149307 TCATTTACCGAGATCATTAATACGCA 58.851 34.615 0.00 0.00 0.00 5.24
3707 8543 7.654116 TCATTTACCGAGATCATTAATACGCAA 59.346 33.333 0.00 0.00 0.00 4.85
3708 8544 6.758593 TTACCGAGATCATTAATACGCAAC 57.241 37.500 0.00 0.00 0.00 4.17
3709 8545 4.689071 ACCGAGATCATTAATACGCAACA 58.311 39.130 0.00 0.00 0.00 3.33
3710 8546 5.297547 ACCGAGATCATTAATACGCAACAT 58.702 37.500 0.00 0.00 0.00 2.71
3711 8547 5.177511 ACCGAGATCATTAATACGCAACATG 59.822 40.000 0.00 0.00 0.00 3.21
3712 8548 5.389830 CCGAGATCATTAATACGCAACATGG 60.390 44.000 0.00 0.00 0.00 3.66
3713 8549 5.405269 CGAGATCATTAATACGCAACATGGA 59.595 40.000 0.00 0.00 0.00 3.41
3714 8550 6.091305 CGAGATCATTAATACGCAACATGGAT 59.909 38.462 0.00 0.00 0.00 3.41
3715 8551 7.137490 AGATCATTAATACGCAACATGGATG 57.863 36.000 0.00 0.00 0.00 3.51
3716 8552 5.107109 TCATTAATACGCAACATGGATGC 57.893 39.130 13.92 13.92 40.41 3.91
3717 8553 4.578105 TCATTAATACGCAACATGGATGCA 59.422 37.500 21.07 7.23 44.01 3.96
3718 8554 4.972514 TTAATACGCAACATGGATGCAA 57.027 36.364 21.07 11.59 44.01 4.08
3719 8555 3.425577 AATACGCAACATGGATGCAAG 57.574 42.857 21.07 11.13 44.01 4.01
3720 8556 1.093972 TACGCAACATGGATGCAAGG 58.906 50.000 21.07 10.57 44.01 3.61
3721 8557 0.608856 ACGCAACATGGATGCAAGGA 60.609 50.000 21.07 0.00 44.01 3.36
3722 8558 0.527113 CGCAACATGGATGCAAGGAA 59.473 50.000 21.07 0.00 44.01 3.36
3723 8559 1.067706 CGCAACATGGATGCAAGGAAA 60.068 47.619 21.07 0.00 44.01 3.13
3724 8560 2.340337 GCAACATGGATGCAAGGAAAC 58.660 47.619 17.76 0.00 43.29 2.78
3725 8561 2.028748 GCAACATGGATGCAAGGAAACT 60.029 45.455 17.76 0.00 43.29 2.66
3726 8562 3.581755 CAACATGGATGCAAGGAAACTG 58.418 45.455 0.00 0.00 42.68 3.16
3727 8563 3.159213 ACATGGATGCAAGGAAACTGA 57.841 42.857 0.00 0.00 42.68 3.41
3728 8564 3.087031 ACATGGATGCAAGGAAACTGAG 58.913 45.455 0.00 0.00 42.68 3.35
3729 8565 2.957402 TGGATGCAAGGAAACTGAGT 57.043 45.000 0.00 0.00 42.68 3.41
3730 8566 2.507484 TGGATGCAAGGAAACTGAGTG 58.493 47.619 0.00 0.00 42.68 3.51
3731 8567 2.106338 TGGATGCAAGGAAACTGAGTGA 59.894 45.455 0.00 0.00 42.68 3.41
3732 8568 3.149196 GGATGCAAGGAAACTGAGTGAA 58.851 45.455 0.00 0.00 42.68 3.18
3733 8569 3.190118 GGATGCAAGGAAACTGAGTGAAG 59.810 47.826 0.00 0.00 42.68 3.02
3734 8570 2.575532 TGCAAGGAAACTGAGTGAAGG 58.424 47.619 0.00 0.00 42.68 3.46
3735 8571 2.172505 TGCAAGGAAACTGAGTGAAGGA 59.827 45.455 0.00 0.00 42.68 3.36
3736 8572 3.214328 GCAAGGAAACTGAGTGAAGGAA 58.786 45.455 0.00 0.00 42.68 3.36
3737 8573 3.251972 GCAAGGAAACTGAGTGAAGGAAG 59.748 47.826 0.00 0.00 42.68 3.46
3738 8574 4.455606 CAAGGAAACTGAGTGAAGGAAGT 58.544 43.478 0.00 0.00 42.68 3.01
3739 8575 5.611374 CAAGGAAACTGAGTGAAGGAAGTA 58.389 41.667 0.00 0.00 42.68 2.24
3740 8576 5.476091 AGGAAACTGAGTGAAGGAAGTAG 57.524 43.478 0.00 0.00 41.13 2.57
3741 8577 3.997681 GGAAACTGAGTGAAGGAAGTAGC 59.002 47.826 0.00 0.00 0.00 3.58
3742 8578 4.262678 GGAAACTGAGTGAAGGAAGTAGCT 60.263 45.833 0.00 0.00 0.00 3.32
3743 8579 5.047235 GGAAACTGAGTGAAGGAAGTAGCTA 60.047 44.000 0.00 0.00 0.00 3.32
3744 8580 5.652994 AACTGAGTGAAGGAAGTAGCTAG 57.347 43.478 0.00 0.00 0.00 3.42
3745 8581 4.668636 ACTGAGTGAAGGAAGTAGCTAGT 58.331 43.478 0.00 0.00 0.00 2.57
3746 8582 4.461081 ACTGAGTGAAGGAAGTAGCTAGTG 59.539 45.833 0.73 0.00 0.00 2.74
3747 8583 4.408276 TGAGTGAAGGAAGTAGCTAGTGT 58.592 43.478 0.73 0.00 0.00 3.55
3748 8584 4.459685 TGAGTGAAGGAAGTAGCTAGTGTC 59.540 45.833 0.73 2.48 0.00 3.67
3749 8585 4.408276 AGTGAAGGAAGTAGCTAGTGTCA 58.592 43.478 0.73 1.61 0.00 3.58
3750 8586 5.020132 AGTGAAGGAAGTAGCTAGTGTCAT 58.980 41.667 0.73 0.00 0.00 3.06
3751 8587 5.482175 AGTGAAGGAAGTAGCTAGTGTCATT 59.518 40.000 0.73 6.18 0.00 2.57
3752 8588 6.663953 AGTGAAGGAAGTAGCTAGTGTCATTA 59.336 38.462 0.73 0.00 0.00 1.90
3753 8589 7.343316 AGTGAAGGAAGTAGCTAGTGTCATTAT 59.657 37.037 0.73 0.00 0.00 1.28
3754 8590 7.436673 GTGAAGGAAGTAGCTAGTGTCATTATG 59.563 40.741 0.73 0.00 0.00 1.90
3755 8591 7.342026 TGAAGGAAGTAGCTAGTGTCATTATGA 59.658 37.037 0.73 0.00 0.00 2.15
3767 8603 3.305964 GTCATTATGACTGCATGCATGC 58.694 45.455 38.71 38.71 44.66 4.06
3782 8618 5.653507 CATGCATGCAAGTATTAAACAGGT 58.346 37.500 26.68 0.00 0.00 4.00
3783 8619 5.720371 TGCATGCAAGTATTAAACAGGTT 57.280 34.783 20.30 0.00 0.00 3.50
3784 8620 5.468592 TGCATGCAAGTATTAAACAGGTTG 58.531 37.500 20.30 0.00 0.00 3.77
3785 8621 5.010516 TGCATGCAAGTATTAAACAGGTTGT 59.989 36.000 20.30 0.00 0.00 3.32
3786 8622 5.925969 GCATGCAAGTATTAAACAGGTTGTT 59.074 36.000 14.21 0.00 43.41 2.83
3787 8623 7.087639 GCATGCAAGTATTAAACAGGTTGTTA 58.912 34.615 14.21 0.00 40.14 2.41
3788 8624 7.273381 GCATGCAAGTATTAAACAGGTTGTTAG 59.727 37.037 14.21 0.00 40.14 2.34
3789 8625 7.811117 TGCAAGTATTAAACAGGTTGTTAGT 57.189 32.000 0.00 0.00 40.14 2.24
3790 8626 8.905660 TGCAAGTATTAAACAGGTTGTTAGTA 57.094 30.769 0.00 0.00 40.14 1.82
3791 8627 9.509956 TGCAAGTATTAAACAGGTTGTTAGTAT 57.490 29.630 0.00 0.00 40.14 2.12
3792 8628 9.769093 GCAAGTATTAAACAGGTTGTTAGTATG 57.231 33.333 0.00 0.00 40.14 2.39
3795 8631 9.886132 AGTATTAAACAGGTTGTTAGTATGAGG 57.114 33.333 0.00 0.00 40.14 3.86
3796 8632 9.880157 GTATTAAACAGGTTGTTAGTATGAGGA 57.120 33.333 0.00 0.00 40.14 3.71
3798 8634 9.802039 ATTAAACAGGTTGTTAGTATGAGGAAA 57.198 29.630 0.00 0.00 40.14 3.13
3799 8635 9.802039 TTAAACAGGTTGTTAGTATGAGGAAAT 57.198 29.630 0.00 0.00 40.14 2.17
3801 8637 9.975218 AAACAGGTTGTTAGTATGAGGAAATAT 57.025 29.630 0.00 0.00 40.14 1.28
3802 8638 9.614792 AACAGGTTGTTAGTATGAGGAAATATC 57.385 33.333 0.00 0.00 39.09 1.63
3803 8639 8.768397 ACAGGTTGTTAGTATGAGGAAATATCA 58.232 33.333 0.00 0.00 0.00 2.15
3804 8640 9.784531 CAGGTTGTTAGTATGAGGAAATATCAT 57.215 33.333 0.00 0.00 40.45 2.45
3826 8662 9.838339 ATCATTAATTCTTTCCTCGAATACTGT 57.162 29.630 0.00 0.00 31.27 3.55
3827 8663 9.667107 TCATTAATTCTTTCCTCGAATACTGTT 57.333 29.630 0.00 0.00 31.27 3.16
3828 8664 9.708222 CATTAATTCTTTCCTCGAATACTGTTG 57.292 33.333 0.00 0.00 31.27 3.33
3829 8665 6.743575 AATTCTTTCCTCGAATACTGTTGG 57.256 37.500 0.00 0.00 31.27 3.77
3830 8666 4.884668 TCTTTCCTCGAATACTGTTGGT 57.115 40.909 0.00 0.00 0.00 3.67
3831 8667 4.566004 TCTTTCCTCGAATACTGTTGGTG 58.434 43.478 0.00 0.00 0.00 4.17
3832 8668 3.328382 TTCCTCGAATACTGTTGGTGG 57.672 47.619 0.00 0.00 0.00 4.61
3833 8669 1.066430 TCCTCGAATACTGTTGGTGGC 60.066 52.381 0.00 0.00 0.00 5.01
3834 8670 1.369625 CTCGAATACTGTTGGTGGCC 58.630 55.000 0.00 0.00 0.00 5.36
3835 8671 0.981183 TCGAATACTGTTGGTGGCCT 59.019 50.000 3.32 0.00 0.00 5.19
3836 8672 1.349688 TCGAATACTGTTGGTGGCCTT 59.650 47.619 3.32 0.00 0.00 4.35
3837 8673 1.468520 CGAATACTGTTGGTGGCCTTG 59.531 52.381 3.32 0.00 0.00 3.61
3838 8674 2.514803 GAATACTGTTGGTGGCCTTGT 58.485 47.619 3.32 0.00 0.00 3.16
3839 8675 3.681593 GAATACTGTTGGTGGCCTTGTA 58.318 45.455 3.32 0.00 0.00 2.41
3840 8676 4.270008 GAATACTGTTGGTGGCCTTGTAT 58.730 43.478 3.32 0.00 0.00 2.29
3841 8677 2.675658 ACTGTTGGTGGCCTTGTATT 57.324 45.000 3.32 0.00 0.00 1.89
3842 8678 2.238521 ACTGTTGGTGGCCTTGTATTG 58.761 47.619 3.32 0.00 0.00 1.90
3843 8679 2.158534 ACTGTTGGTGGCCTTGTATTGA 60.159 45.455 3.32 0.00 0.00 2.57
3844 8680 3.091545 CTGTTGGTGGCCTTGTATTGAT 58.908 45.455 3.32 0.00 0.00 2.57
3845 8681 2.824936 TGTTGGTGGCCTTGTATTGATG 59.175 45.455 3.32 0.00 0.00 3.07
3846 8682 2.825532 GTTGGTGGCCTTGTATTGATGT 59.174 45.455 3.32 0.00 0.00 3.06
3847 8683 4.013728 GTTGGTGGCCTTGTATTGATGTA 58.986 43.478 3.32 0.00 0.00 2.29
3848 8684 4.308526 TGGTGGCCTTGTATTGATGTAA 57.691 40.909 3.32 0.00 0.00 2.41
3849 8685 4.667573 TGGTGGCCTTGTATTGATGTAAA 58.332 39.130 3.32 0.00 0.00 2.01
3850 8686 5.080337 TGGTGGCCTTGTATTGATGTAAAA 58.920 37.500 3.32 0.00 0.00 1.52
3851 8687 5.047660 TGGTGGCCTTGTATTGATGTAAAAC 60.048 40.000 3.32 0.00 0.00 2.43
3852 8688 5.092781 GTGGCCTTGTATTGATGTAAAACG 58.907 41.667 3.32 0.00 0.00 3.60
3853 8689 4.762765 TGGCCTTGTATTGATGTAAAACGT 59.237 37.500 3.32 0.00 0.00 3.99
3854 8690 5.938710 TGGCCTTGTATTGATGTAAAACGTA 59.061 36.000 3.32 0.00 0.00 3.57
3855 8691 6.600032 TGGCCTTGTATTGATGTAAAACGTAT 59.400 34.615 3.32 0.00 0.00 3.06
3856 8692 7.769507 TGGCCTTGTATTGATGTAAAACGTATA 59.230 33.333 3.32 0.00 0.00 1.47
3857 8693 8.780249 GGCCTTGTATTGATGTAAAACGTATAT 58.220 33.333 0.00 0.00 0.00 0.86
3867 8703 9.483916 TGATGTAAAACGTATATTCCATAGTGG 57.516 33.333 0.00 0.00 39.43 4.00
3868 8704 7.718272 TGTAAAACGTATATTCCATAGTGGC 57.282 36.000 0.00 0.00 37.47 5.01
3869 8705 6.707161 TGTAAAACGTATATTCCATAGTGGCC 59.293 38.462 0.00 0.00 37.47 5.36
3870 8706 5.562298 AAACGTATATTCCATAGTGGCCT 57.438 39.130 3.32 0.00 37.47 5.19
3871 8707 5.562298 AACGTATATTCCATAGTGGCCTT 57.438 39.130 3.32 0.00 37.47 4.35
3872 8708 5.562298 ACGTATATTCCATAGTGGCCTTT 57.438 39.130 3.32 0.00 37.47 3.11
3873 8709 5.937111 ACGTATATTCCATAGTGGCCTTTT 58.063 37.500 3.32 0.00 37.47 2.27
3874 8710 7.069877 ACGTATATTCCATAGTGGCCTTTTA 57.930 36.000 3.32 0.00 37.47 1.52
3875 8711 7.686434 ACGTATATTCCATAGTGGCCTTTTAT 58.314 34.615 3.32 0.00 37.47 1.40
3876 8712 8.818860 ACGTATATTCCATAGTGGCCTTTTATA 58.181 33.333 3.32 0.00 37.47 0.98
3877 8713 9.832445 CGTATATTCCATAGTGGCCTTTTATAT 57.168 33.333 3.32 0.00 37.47 0.86
3889 8725 9.574516 AGTGGCCTTTTATATAAGTAATTGGAG 57.425 33.333 3.32 0.00 0.00 3.86
3890 8726 8.793592 GTGGCCTTTTATATAAGTAATTGGAGG 58.206 37.037 3.32 0.00 0.00 4.30
3891 8727 7.947890 TGGCCTTTTATATAAGTAATTGGAGGG 59.052 37.037 3.32 0.00 0.00 4.30
3892 8728 8.168058 GGCCTTTTATATAAGTAATTGGAGGGA 58.832 37.037 0.00 0.00 0.00 4.20
3893 8729 9.232473 GCCTTTTATATAAGTAATTGGAGGGAG 57.768 37.037 2.78 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.972223 CCTCACGTCACCTCCTCGT 60.972 63.158 0.00 0.00 38.34 4.18
38 39 2.701780 CCCTCACGTCACCTCCTCG 61.702 68.421 0.00 0.00 0.00 4.63
139 140 3.922240 CACTTGTGCAAATATGGCTGTTC 59.078 43.478 0.00 0.00 0.00 3.18
398 406 1.683385 TGTGTGTGTGTGAGGAGAGAG 59.317 52.381 0.00 0.00 0.00 3.20
400 408 1.871408 GCTGTGTGTGTGTGAGGAGAG 60.871 57.143 0.00 0.00 0.00 3.20
402 410 0.179076 TGCTGTGTGTGTGTGAGGAG 60.179 55.000 0.00 0.00 0.00 3.69
405 413 2.789208 CTTTTGCTGTGTGTGTGTGAG 58.211 47.619 0.00 0.00 0.00 3.51
406 414 1.135431 GCTTTTGCTGTGTGTGTGTGA 60.135 47.619 0.00 0.00 43.35 3.58
552 566 4.935808 ACAAAATTAGACGAGGTGATGGAC 59.064 41.667 0.00 0.00 0.00 4.02
708 724 6.780031 TGTTTCATTCCCAGTTTTCTTCCATA 59.220 34.615 0.00 0.00 0.00 2.74
806 822 9.822727 ATGTATCATATCCCATATATACGGTCA 57.177 33.333 0.00 0.00 0.00 4.02
1039 1276 0.819259 TGCAGTTGGAGTGGCTCAAC 60.819 55.000 0.00 0.00 31.08 3.18
1077 1314 2.288666 AGTGCACACGACATCTGTTTT 58.711 42.857 21.04 0.00 36.20 2.43
1112 1349 6.500684 TGAAAGCAATGTAAGAATCTGTCC 57.499 37.500 0.00 0.00 0.00 4.02
1131 1368 8.392879 AGGGGACTCGTATTTTCAATGTTGAAA 61.393 37.037 14.95 14.95 45.91 2.69
1152 1389 3.388024 GCTGTGTGAAGTATGATAGGGGA 59.612 47.826 0.00 0.00 0.00 4.81
1158 1395 1.066215 TGCGGCTGTGTGAAGTATGAT 60.066 47.619 0.00 0.00 0.00 2.45
1166 1403 1.597854 CCTTTCTGCGGCTGTGTGA 60.598 57.895 0.00 0.00 0.00 3.58
1185 1422 1.522806 GGATCGTGGCGGCACAATA 60.523 57.895 36.79 23.71 0.00 1.90
1189 1426 3.576356 CATGGATCGTGGCGGCAC 61.576 66.667 30.53 30.53 0.00 5.01
1209 1446 5.362556 ACTGCATTGTTATCTCAACACAC 57.637 39.130 0.00 0.00 0.00 3.82
1210 1447 5.761003 CAACTGCATTGTTATCTCAACACA 58.239 37.500 0.00 0.00 33.20 3.72
1254 1491 0.794229 GTTCATTGGCACGACGCATG 60.794 55.000 0.00 0.00 45.17 4.06
1259 1496 4.419522 ACAATAAGTTCATTGGCACGAC 57.580 40.909 0.00 0.00 39.71 4.34
1295 1538 5.183713 TCCTCAACTACAAGGCAATCATTTG 59.816 40.000 0.00 0.00 35.85 2.32
1296 1539 5.324409 TCCTCAACTACAAGGCAATCATTT 58.676 37.500 0.00 0.00 32.37 2.32
1391 1634 2.355108 GCTTCCTGTGGCTCATAGACAA 60.355 50.000 1.44 0.00 33.17 3.18
1467 1740 5.711506 TGCACTGGACACAAATTGAATAGAT 59.288 36.000 0.00 0.00 0.00 1.98
1557 1846 3.131396 CGTTCAGTTCTGGTACAAAGCT 58.869 45.455 0.00 0.00 38.70 3.74
1685 1976 2.030274 GTGCAACCCAACCACTGATTAC 60.030 50.000 0.00 0.00 0.00 1.89
1754 2053 5.036737 GGTGAGACTTGTCAACAACAATTG 58.963 41.667 3.24 3.24 46.53 2.32
1757 2056 3.680490 TGGTGAGACTTGTCAACAACAA 58.320 40.909 13.08 0.00 41.29 2.83
1830 2164 8.320396 ACTTTTCTTTCTTAGTTTACCGATCC 57.680 34.615 0.00 0.00 0.00 3.36
1875 2220 6.438763 GCACAAGTTTCATTTGTACTAGCTT 58.561 36.000 0.00 0.00 36.67 3.74
1876 2221 5.334105 CGCACAAGTTTCATTTGTACTAGCT 60.334 40.000 0.00 0.00 36.67 3.32
1936 2397 8.561212 TGACGTTTGTATTAGTTAAATTGCTGT 58.439 29.630 0.00 0.00 0.00 4.40
1948 2409 4.693566 TGGCCTTTCTGACGTTTGTATTAG 59.306 41.667 3.32 0.00 0.00 1.73
1958 2419 2.213499 GATACCATGGCCTTTCTGACG 58.787 52.381 13.04 0.00 0.00 4.35
1969 2430 4.885907 AGATGCTCTTTGTTGATACCATGG 59.114 41.667 11.19 11.19 0.00 3.66
1972 2433 4.701651 CCAAGATGCTCTTTGTTGATACCA 59.298 41.667 0.00 0.00 33.78 3.25
1975 2436 5.809001 AGACCAAGATGCTCTTTGTTGATA 58.191 37.500 4.82 0.00 33.21 2.15
1976 2437 4.660168 AGACCAAGATGCTCTTTGTTGAT 58.340 39.130 4.82 0.00 33.21 2.57
1979 4889 3.416156 GGAGACCAAGATGCTCTTTGTT 58.584 45.455 0.00 0.00 33.21 2.83
2005 4929 4.319133 CCATAGTGTGGGTGTGGC 57.681 61.111 0.00 0.00 44.79 5.01
2024 4949 2.359230 GGCGCTGACAAAGAGGCT 60.359 61.111 7.64 0.00 46.09 4.58
2040 4972 0.606401 ATGTCAGCCAAGTTCGTGGG 60.606 55.000 6.87 0.00 39.26 4.61
2091 5023 1.497278 CAATGGCGGACACAACGAG 59.503 57.895 0.00 0.00 0.00 4.18
2092 5024 2.612567 GCAATGGCGGACACAACGA 61.613 57.895 0.00 0.00 0.00 3.85
2093 5025 2.126888 GCAATGGCGGACACAACG 60.127 61.111 0.00 0.00 0.00 4.10
2106 5048 1.141881 CCTACAGCTCGTCGGCAAT 59.858 57.895 8.15 0.00 34.17 3.56
2107 5049 2.571757 CCTACAGCTCGTCGGCAA 59.428 61.111 8.15 0.00 34.17 4.52
2121 5063 2.508928 GGCCTATTGCACCGCCTA 59.491 61.111 0.00 0.00 43.89 3.93
2125 5067 1.227674 GAGGAGGCCTATTGCACCG 60.228 63.158 4.42 0.00 43.89 4.94
2138 5084 2.206536 GGGATGAGGAGGCGAGGAG 61.207 68.421 0.00 0.00 0.00 3.69
2153 5100 3.599285 GATGACGGCGTTGTGGGGA 62.599 63.158 16.19 0.00 0.00 4.81
2155 5102 2.047274 AGATGACGGCGTTGTGGG 60.047 61.111 16.19 0.00 0.00 4.61
2158 5105 2.742372 GCCAGATGACGGCGTTGT 60.742 61.111 16.19 5.80 40.35 3.32
2179 5136 4.834892 CCAAAATGCCCGCGCTCG 62.835 66.667 5.56 0.00 35.36 5.03
2187 5144 2.493035 CCACTTCAAACCCAAAATGCC 58.507 47.619 0.00 0.00 0.00 4.40
2193 5150 1.733402 CGCTGCCACTTCAAACCCAA 61.733 55.000 0.00 0.00 0.00 4.12
2209 5167 1.603172 GCGATATGTACTTCTGCCGCT 60.603 52.381 0.00 0.00 38.55 5.52
2212 5170 1.419374 CGGCGATATGTACTTCTGCC 58.581 55.000 0.00 1.93 37.66 4.85
2214 5172 1.419374 GGCGGCGATATGTACTTCTG 58.581 55.000 12.98 0.00 0.00 3.02
2283 6611 7.438459 GGCATAAACATGTCTATTTAGTCGTCT 59.562 37.037 0.00 0.00 0.00 4.18
2291 6619 3.003275 CGGCGGCATAAACATGTCTATTT 59.997 43.478 10.53 0.00 0.00 1.40
2292 6620 2.548057 CGGCGGCATAAACATGTCTATT 59.452 45.455 10.53 0.00 0.00 1.73
2314 6643 0.992072 CATGACTTCAGTGCGTACGG 59.008 55.000 18.39 0.00 0.00 4.02
2315 6644 0.366871 GCATGACTTCAGTGCGTACG 59.633 55.000 11.84 11.84 0.00 3.67
2316 6645 0.721718 GGCATGACTTCAGTGCGTAC 59.278 55.000 0.00 0.00 39.69 3.67
2317 6646 0.320050 TGGCATGACTTCAGTGCGTA 59.680 50.000 0.00 0.00 39.69 4.42
2318 6647 0.534877 TTGGCATGACTTCAGTGCGT 60.535 50.000 0.00 0.00 39.69 5.24
2320 6649 1.198637 GAGTTGGCATGACTTCAGTGC 59.801 52.381 0.00 5.55 38.12 4.40
2322 6651 1.421268 TGGAGTTGGCATGACTTCAGT 59.579 47.619 0.00 0.00 29.42 3.41
2342 6671 0.247736 GAGGCACGTCATCAGAGGTT 59.752 55.000 0.00 0.00 40.64 3.50
2346 6711 0.528017 GTGAGAGGCACGTCATCAGA 59.472 55.000 0.00 0.00 37.83 3.27
2441 6921 1.067071 ACAAGCAACTAGTAGGGTCGC 60.067 52.381 0.00 0.00 0.00 5.19
2442 6922 2.607187 CACAAGCAACTAGTAGGGTCG 58.393 52.381 0.00 0.00 0.00 4.79
2446 6946 1.359848 CCGCACAAGCAACTAGTAGG 58.640 55.000 0.00 0.00 42.27 3.18
2449 6949 0.602905 GACCCGCACAAGCAACTAGT 60.603 55.000 0.00 0.00 42.27 2.57
2511 7130 1.136446 GCCGTCGTGACACATAACAAC 60.136 52.381 6.37 0.00 0.00 3.32
2512 7131 1.141645 GCCGTCGTGACACATAACAA 58.858 50.000 6.37 0.00 0.00 2.83
2513 7132 1.004785 CGCCGTCGTGACACATAACA 61.005 55.000 6.37 0.00 0.00 2.41
2514 7133 1.680105 CCGCCGTCGTGACACATAAC 61.680 60.000 6.37 0.00 0.00 1.89
2515 7134 1.444724 CCGCCGTCGTGACACATAA 60.445 57.895 6.37 0.00 0.00 1.90
2516 7135 2.179767 CCGCCGTCGTGACACATA 59.820 61.111 6.37 0.00 0.00 2.29
2517 7136 4.735132 CCCGCCGTCGTGACACAT 62.735 66.667 6.37 0.00 0.00 3.21
2523 7142 4.728102 TACTTGCCCGCCGTCGTG 62.728 66.667 0.00 0.00 0.00 4.35
2524 7143 3.927163 CTTACTTGCCCGCCGTCGT 62.927 63.158 0.00 0.00 0.00 4.34
2525 7144 3.186047 CTTACTTGCCCGCCGTCG 61.186 66.667 0.00 0.00 0.00 5.12
2526 7145 2.047560 ACTTACTTGCCCGCCGTC 60.048 61.111 0.00 0.00 0.00 4.79
2527 7146 2.358247 CACTTACTTGCCCGCCGT 60.358 61.111 0.00 0.00 0.00 5.68
2528 7147 1.512156 AAACACTTACTTGCCCGCCG 61.512 55.000 0.00 0.00 0.00 6.46
2529 7148 1.525941 TAAACACTTACTTGCCCGCC 58.474 50.000 0.00 0.00 0.00 6.13
2530 7149 2.486592 ACATAAACACTTACTTGCCCGC 59.513 45.455 0.00 0.00 0.00 6.13
2531 7150 3.500680 ACACATAAACACTTACTTGCCCG 59.499 43.478 0.00 0.00 0.00 6.13
2532 7151 4.517453 TGACACATAAACACTTACTTGCCC 59.483 41.667 0.00 0.00 0.00 5.36
2533 7152 5.449304 GTGACACATAAACACTTACTTGCC 58.551 41.667 0.00 0.00 0.00 4.52
2534 7153 5.050634 TCGTGACACATAAACACTTACTTGC 60.051 40.000 6.37 0.00 33.13 4.01
2535 7154 6.019398 TGTCGTGACACATAAACACTTACTTG 60.019 38.462 6.37 0.00 36.21 3.16
2536 7155 6.044046 TGTCGTGACACATAAACACTTACTT 58.956 36.000 6.37 0.00 36.21 2.24
2537 7156 5.593968 TGTCGTGACACATAAACACTTACT 58.406 37.500 6.37 0.00 36.21 2.24
2538 7157 5.893512 TGTCGTGACACATAAACACTTAC 57.106 39.130 6.37 0.00 36.21 2.34
2539 7158 6.565060 GCAATGTCGTGACACATAAACACTTA 60.565 38.462 4.57 0.00 45.05 2.24
2540 7159 5.747565 CAATGTCGTGACACATAAACACTT 58.252 37.500 4.57 0.00 45.05 3.16
2541 7160 4.319477 GCAATGTCGTGACACATAAACACT 60.319 41.667 4.57 0.00 45.05 3.55
2542 7161 3.906008 GCAATGTCGTGACACATAAACAC 59.094 43.478 4.57 0.00 45.05 3.32
2543 7162 3.812609 AGCAATGTCGTGACACATAAACA 59.187 39.130 4.57 4.67 45.05 2.83
2544 7163 4.394795 GAGCAATGTCGTGACACATAAAC 58.605 43.478 4.57 0.00 45.05 2.01
2545 7164 3.435327 GGAGCAATGTCGTGACACATAAA 59.565 43.478 4.57 0.00 45.05 1.40
2642 7275 6.014242 TCTCTTTCTACTTTGAGCATCTCCAA 60.014 38.462 0.00 0.00 34.92 3.53
2643 7276 5.481824 TCTCTTTCTACTTTGAGCATCTCCA 59.518 40.000 0.00 0.00 34.92 3.86
2644 7277 5.971763 TCTCTTTCTACTTTGAGCATCTCC 58.028 41.667 0.00 0.00 34.92 3.71
2645 7278 6.701400 GGATCTCTTTCTACTTTGAGCATCTC 59.299 42.308 0.00 0.00 34.92 2.75
2646 7279 6.581712 GGATCTCTTTCTACTTTGAGCATCT 58.418 40.000 0.00 0.00 34.92 2.90
2647 7280 5.461737 CGGATCTCTTTCTACTTTGAGCATC 59.538 44.000 0.00 0.00 0.00 3.91
2648 7281 5.127845 TCGGATCTCTTTCTACTTTGAGCAT 59.872 40.000 0.00 0.00 0.00 3.79
2649 7282 4.462834 TCGGATCTCTTTCTACTTTGAGCA 59.537 41.667 0.00 0.00 0.00 4.26
2650 7283 5.000012 TCGGATCTCTTTCTACTTTGAGC 58.000 43.478 0.00 0.00 0.00 4.26
2651 7284 5.040635 GCTCGGATCTCTTTCTACTTTGAG 58.959 45.833 0.00 0.00 0.00 3.02
2656 7299 6.969993 ATTTAGCTCGGATCTCTTTCTACT 57.030 37.500 0.00 0.00 0.00 2.57
2701 7463 3.307782 GCAGCATTATTCAATTGCCACAC 59.692 43.478 0.00 0.00 0.00 3.82
2785 7550 1.181001 GATTGTCTGCTACGTCGTCG 58.819 55.000 0.00 0.00 43.34 5.12
2920 7692 0.398696 AACCAACCGACTGCACCATA 59.601 50.000 0.00 0.00 0.00 2.74
2924 7699 3.252458 AGAAAATAACCAACCGACTGCAC 59.748 43.478 0.00 0.00 0.00 4.57
2940 7715 6.124340 TGTCTGATGTGCATCCATAGAAAAT 58.876 36.000 9.39 0.00 37.02 1.82
3036 7825 6.176014 AGGTAGTAAAGCAGGATAATCACC 57.824 41.667 0.00 0.00 0.00 4.02
3090 7892 4.763793 AGTTCCAAATCTGAACATCACCAG 59.236 41.667 5.99 0.00 43.57 4.00
3167 7981 7.571798 GCAAGTGGCCATAATTTTCTTTCTTTG 60.572 37.037 9.72 0.00 36.11 2.77
3315 8134 6.589907 GGGCAAAAACTTCAACATTATGGTAG 59.410 38.462 0.00 0.00 0.00 3.18
3349 8168 7.526142 TTTGCCAATATAGTGTGGTGTTTTA 57.474 32.000 0.00 0.00 37.23 1.52
3486 8311 5.301805 AGTCATTTGTTGGTCCAAGGTAAAG 59.698 40.000 3.96 0.00 0.00 1.85
3492 8317 5.242393 AGAATGAGTCATTTGTTGGTCCAAG 59.758 40.000 19.19 0.00 33.90 3.61
3557 8391 6.906848 AGTCAGAGAGCTTACCTAGTATCTT 58.093 40.000 0.00 0.00 0.00 2.40
3561 8395 6.316280 AGAAGTCAGAGAGCTTACCTAGTA 57.684 41.667 0.00 0.00 0.00 1.82
3591 8427 6.434340 GGCCTTGTATATAAAAATGGAGGGAG 59.566 42.308 0.00 0.00 0.00 4.30
3592 8428 6.126038 TGGCCTTGTATATAAAAATGGAGGGA 60.126 38.462 3.32 0.00 0.00 4.20
3593 8429 6.074648 TGGCCTTGTATATAAAAATGGAGGG 58.925 40.000 3.32 0.00 0.00 4.30
3594 8430 7.781324 ATGGCCTTGTATATAAAAATGGAGG 57.219 36.000 3.32 0.00 0.00 4.30
3606 8442 9.688091 TGTAATTTGAGTTTATGGCCTTGTATA 57.312 29.630 3.32 0.00 0.00 1.47
3607 8443 8.588290 TGTAATTTGAGTTTATGGCCTTGTAT 57.412 30.769 3.32 0.00 0.00 2.29
3608 8444 7.122055 CCTGTAATTTGAGTTTATGGCCTTGTA 59.878 37.037 3.32 0.00 0.00 2.41
3609 8445 6.071391 CCTGTAATTTGAGTTTATGGCCTTGT 60.071 38.462 3.32 0.00 0.00 3.16
3610 8446 6.071391 ACCTGTAATTTGAGTTTATGGCCTTG 60.071 38.462 3.32 0.00 0.00 3.61
3611 8447 6.016555 ACCTGTAATTTGAGTTTATGGCCTT 58.983 36.000 3.32 0.00 0.00 4.35
3612 8448 5.580022 ACCTGTAATTTGAGTTTATGGCCT 58.420 37.500 3.32 0.00 0.00 5.19
3613 8449 5.914898 ACCTGTAATTTGAGTTTATGGCC 57.085 39.130 0.00 0.00 0.00 5.36
3614 8450 7.385778 TGTACCTGTAATTTGAGTTTATGGC 57.614 36.000 0.00 0.00 0.00 4.40
3615 8451 9.840427 CTTTGTACCTGTAATTTGAGTTTATGG 57.160 33.333 0.00 0.00 0.00 2.74
3616 8452 9.840427 CCTTTGTACCTGTAATTTGAGTTTATG 57.160 33.333 0.00 0.00 0.00 1.90
3617 8453 9.582648 ACCTTTGTACCTGTAATTTGAGTTTAT 57.417 29.630 0.00 0.00 0.00 1.40
3618 8454 8.983702 ACCTTTGTACCTGTAATTTGAGTTTA 57.016 30.769 0.00 0.00 0.00 2.01
3619 8455 7.891498 ACCTTTGTACCTGTAATTTGAGTTT 57.109 32.000 0.00 0.00 0.00 2.66
3620 8456 8.983702 TTACCTTTGTACCTGTAATTTGAGTT 57.016 30.769 0.00 0.00 0.00 3.01
3621 8457 8.983702 TTTACCTTTGTACCTGTAATTTGAGT 57.016 30.769 0.00 0.00 0.00 3.41
3630 8466 8.643324 TGCATTAAATTTTACCTTTGTACCTGT 58.357 29.630 0.00 0.00 0.00 4.00
3631 8467 9.651913 ATGCATTAAATTTTACCTTTGTACCTG 57.348 29.630 0.00 0.00 0.00 4.00
3643 8479 9.364989 GGCTTGTCAAGTATGCATTAAATTTTA 57.635 29.630 14.03 0.00 0.00 1.52
3644 8480 7.877097 TGGCTTGTCAAGTATGCATTAAATTTT 59.123 29.630 14.03 0.00 0.00 1.82
3645 8481 7.385267 TGGCTTGTCAAGTATGCATTAAATTT 58.615 30.769 14.03 0.00 0.00 1.82
3646 8482 6.934056 TGGCTTGTCAAGTATGCATTAAATT 58.066 32.000 14.03 0.00 0.00 1.82
3647 8483 6.528537 TGGCTTGTCAAGTATGCATTAAAT 57.471 33.333 14.03 0.00 0.00 1.40
3648 8484 5.973899 TGGCTTGTCAAGTATGCATTAAA 57.026 34.783 14.03 0.00 0.00 1.52
3649 8485 5.973899 TTGGCTTGTCAAGTATGCATTAA 57.026 34.783 14.03 0.00 0.00 1.40
3650 8486 6.528537 AATTGGCTTGTCAAGTATGCATTA 57.471 33.333 14.03 0.00 0.00 1.90
3651 8487 5.410355 AATTGGCTTGTCAAGTATGCATT 57.590 34.783 14.03 3.81 0.00 3.56
3652 8488 5.410355 AAATTGGCTTGTCAAGTATGCAT 57.590 34.783 14.03 3.79 0.00 3.96
3653 8489 4.870123 AAATTGGCTTGTCAAGTATGCA 57.130 36.364 14.03 0.00 0.00 3.96
3654 8490 5.928264 AGAAAAATTGGCTTGTCAAGTATGC 59.072 36.000 14.03 0.34 0.00 3.14
3655 8491 7.951530 AAGAAAAATTGGCTTGTCAAGTATG 57.048 32.000 14.03 0.00 0.00 2.39
3656 8492 8.962884 AAAAGAAAAATTGGCTTGTCAAGTAT 57.037 26.923 14.03 3.35 0.00 2.12
3657 8493 8.037758 TGAAAAGAAAAATTGGCTTGTCAAGTA 58.962 29.630 14.03 1.41 34.03 2.24
3658 8494 6.878389 TGAAAAGAAAAATTGGCTTGTCAAGT 59.122 30.769 14.03 0.00 34.03 3.16
3659 8495 7.306205 TGAAAAGAAAAATTGGCTTGTCAAG 57.694 32.000 8.31 8.31 34.03 3.02
3660 8496 7.862512 ATGAAAAGAAAAATTGGCTTGTCAA 57.137 28.000 10.38 0.00 38.83 3.18
3661 8497 7.862512 AATGAAAAGAAAAATTGGCTTGTCA 57.137 28.000 9.29 9.29 39.45 3.58
3662 8498 9.650371 GTAAATGAAAAGAAAAATTGGCTTGTC 57.350 29.630 0.00 0.00 0.00 3.18
3663 8499 8.620416 GGTAAATGAAAAGAAAAATTGGCTTGT 58.380 29.630 0.00 0.00 0.00 3.16
3664 8500 7.798052 CGGTAAATGAAAAGAAAAATTGGCTTG 59.202 33.333 0.00 0.00 0.00 4.01
3665 8501 7.713073 TCGGTAAATGAAAAGAAAAATTGGCTT 59.287 29.630 0.00 0.00 0.00 4.35
3666 8502 7.213678 TCGGTAAATGAAAAGAAAAATTGGCT 58.786 30.769 0.00 0.00 0.00 4.75
3667 8503 7.383843 TCTCGGTAAATGAAAAGAAAAATTGGC 59.616 33.333 0.00 0.00 0.00 4.52
3668 8504 8.810652 TCTCGGTAAATGAAAAGAAAAATTGG 57.189 30.769 0.00 0.00 0.00 3.16
3679 8515 8.492748 GCGTATTAATGATCTCGGTAAATGAAA 58.507 33.333 0.00 0.00 0.00 2.69
3680 8516 7.654116 TGCGTATTAATGATCTCGGTAAATGAA 59.346 33.333 0.00 0.00 0.00 2.57
3681 8517 7.149307 TGCGTATTAATGATCTCGGTAAATGA 58.851 34.615 0.00 0.00 0.00 2.57
3682 8518 7.346208 TGCGTATTAATGATCTCGGTAAATG 57.654 36.000 0.00 0.00 0.00 2.32
3683 8519 7.439955 TGTTGCGTATTAATGATCTCGGTAAAT 59.560 33.333 0.00 0.00 0.00 1.40
3684 8520 6.757478 TGTTGCGTATTAATGATCTCGGTAAA 59.243 34.615 0.00 0.00 0.00 2.01
3685 8521 6.274579 TGTTGCGTATTAATGATCTCGGTAA 58.725 36.000 0.00 0.00 0.00 2.85
3686 8522 5.834169 TGTTGCGTATTAATGATCTCGGTA 58.166 37.500 0.00 0.00 0.00 4.02
3687 8523 4.689071 TGTTGCGTATTAATGATCTCGGT 58.311 39.130 0.00 0.00 0.00 4.69
3688 8524 5.389830 CCATGTTGCGTATTAATGATCTCGG 60.390 44.000 0.00 0.00 0.00 4.63
3689 8525 5.405269 TCCATGTTGCGTATTAATGATCTCG 59.595 40.000 0.00 0.00 0.00 4.04
3690 8526 6.785488 TCCATGTTGCGTATTAATGATCTC 57.215 37.500 0.00 0.00 0.00 2.75
3691 8527 6.348786 GCATCCATGTTGCGTATTAATGATCT 60.349 38.462 0.00 0.00 0.00 2.75
3692 8528 5.796935 GCATCCATGTTGCGTATTAATGATC 59.203 40.000 0.00 0.00 0.00 2.92
3693 8529 5.241285 TGCATCCATGTTGCGTATTAATGAT 59.759 36.000 11.81 0.00 43.10 2.45
3694 8530 4.578105 TGCATCCATGTTGCGTATTAATGA 59.422 37.500 11.81 0.00 43.10 2.57
3695 8531 4.857799 TGCATCCATGTTGCGTATTAATG 58.142 39.130 11.81 0.00 43.10 1.90
3696 8532 5.507817 CCTTGCATCCATGTTGCGTATTAAT 60.508 40.000 11.81 0.00 43.10 1.40
3697 8533 4.202000 CCTTGCATCCATGTTGCGTATTAA 60.202 41.667 11.81 1.98 43.10 1.40
3698 8534 3.314913 CCTTGCATCCATGTTGCGTATTA 59.685 43.478 11.81 0.00 43.10 0.98
3699 8535 2.099592 CCTTGCATCCATGTTGCGTATT 59.900 45.455 11.81 0.00 43.10 1.89
3700 8536 1.677576 CCTTGCATCCATGTTGCGTAT 59.322 47.619 11.81 0.00 43.10 3.06
3701 8537 1.093972 CCTTGCATCCATGTTGCGTA 58.906 50.000 11.81 3.84 43.10 4.42
3702 8538 0.608856 TCCTTGCATCCATGTTGCGT 60.609 50.000 11.81 0.00 43.10 5.24
3703 8539 0.527113 TTCCTTGCATCCATGTTGCG 59.473 50.000 11.81 1.19 43.10 4.85
3704 8540 2.028748 AGTTTCCTTGCATCCATGTTGC 60.029 45.455 10.16 10.16 40.55 4.17
3705 8541 3.256383 TCAGTTTCCTTGCATCCATGTTG 59.744 43.478 0.00 0.00 0.00 3.33
3706 8542 3.499338 TCAGTTTCCTTGCATCCATGTT 58.501 40.909 0.00 0.00 0.00 2.71
3707 8543 3.087031 CTCAGTTTCCTTGCATCCATGT 58.913 45.455 0.00 0.00 0.00 3.21
3708 8544 3.087031 ACTCAGTTTCCTTGCATCCATG 58.913 45.455 0.00 0.00 0.00 3.66
3709 8545 3.087031 CACTCAGTTTCCTTGCATCCAT 58.913 45.455 0.00 0.00 0.00 3.41
3710 8546 2.106338 TCACTCAGTTTCCTTGCATCCA 59.894 45.455 0.00 0.00 0.00 3.41
3711 8547 2.783135 TCACTCAGTTTCCTTGCATCC 58.217 47.619 0.00 0.00 0.00 3.51
3712 8548 3.190118 CCTTCACTCAGTTTCCTTGCATC 59.810 47.826 0.00 0.00 0.00 3.91
3713 8549 3.152341 CCTTCACTCAGTTTCCTTGCAT 58.848 45.455 0.00 0.00 0.00 3.96
3714 8550 2.172505 TCCTTCACTCAGTTTCCTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
3715 8551 2.851195 TCCTTCACTCAGTTTCCTTGC 58.149 47.619 0.00 0.00 0.00 4.01
3716 8552 4.455606 ACTTCCTTCACTCAGTTTCCTTG 58.544 43.478 0.00 0.00 0.00 3.61
3717 8553 4.779993 ACTTCCTTCACTCAGTTTCCTT 57.220 40.909 0.00 0.00 0.00 3.36
3718 8554 4.262678 GCTACTTCCTTCACTCAGTTTCCT 60.263 45.833 0.00 0.00 0.00 3.36
3719 8555 3.997681 GCTACTTCCTTCACTCAGTTTCC 59.002 47.826 0.00 0.00 0.00 3.13
3720 8556 4.888917 AGCTACTTCCTTCACTCAGTTTC 58.111 43.478 0.00 0.00 0.00 2.78
3721 8557 4.965200 AGCTACTTCCTTCACTCAGTTT 57.035 40.909 0.00 0.00 0.00 2.66
3722 8558 5.047660 CACTAGCTACTTCCTTCACTCAGTT 60.048 44.000 0.00 0.00 0.00 3.16
3723 8559 4.461081 CACTAGCTACTTCCTTCACTCAGT 59.539 45.833 0.00 0.00 0.00 3.41
3724 8560 4.461081 ACACTAGCTACTTCCTTCACTCAG 59.539 45.833 0.00 0.00 0.00 3.35
3725 8561 4.408276 ACACTAGCTACTTCCTTCACTCA 58.592 43.478 0.00 0.00 0.00 3.41
3726 8562 4.459685 TGACACTAGCTACTTCCTTCACTC 59.540 45.833 0.00 0.00 0.00 3.51
3727 8563 4.408276 TGACACTAGCTACTTCCTTCACT 58.592 43.478 0.00 0.00 0.00 3.41
3728 8564 4.785511 TGACACTAGCTACTTCCTTCAC 57.214 45.455 0.00 0.00 0.00 3.18
3729 8565 7.342026 TCATAATGACACTAGCTACTTCCTTCA 59.658 37.037 0.00 0.00 0.00 3.02
3730 8566 7.650104 GTCATAATGACACTAGCTACTTCCTTC 59.350 40.741 0.00 0.00 46.22 3.46
3731 8567 7.493367 GTCATAATGACACTAGCTACTTCCTT 58.507 38.462 0.00 0.00 46.22 3.36
3732 8568 7.045126 GTCATAATGACACTAGCTACTTCCT 57.955 40.000 0.00 0.00 46.22 3.36
3759 8595 5.653507 ACCTGTTTAATACTTGCATGCATG 58.346 37.500 26.93 26.93 0.00 4.06
3760 8596 5.920193 ACCTGTTTAATACTTGCATGCAT 57.080 34.783 23.37 10.46 0.00 3.96
3761 8597 5.010516 ACAACCTGTTTAATACTTGCATGCA 59.989 36.000 18.46 18.46 0.00 3.96
3762 8598 5.469479 ACAACCTGTTTAATACTTGCATGC 58.531 37.500 11.82 11.82 0.00 4.06
3763 8599 8.296713 ACTAACAACCTGTTTAATACTTGCATG 58.703 33.333 0.00 0.00 41.45 4.06
3764 8600 8.404107 ACTAACAACCTGTTTAATACTTGCAT 57.596 30.769 0.00 0.00 41.45 3.96
3765 8601 7.811117 ACTAACAACCTGTTTAATACTTGCA 57.189 32.000 0.00 0.00 41.45 4.08
3766 8602 9.769093 CATACTAACAACCTGTTTAATACTTGC 57.231 33.333 0.00 0.00 41.45 4.01
3769 8605 9.886132 CCTCATACTAACAACCTGTTTAATACT 57.114 33.333 0.00 0.00 41.45 2.12
3770 8606 9.880157 TCCTCATACTAACAACCTGTTTAATAC 57.120 33.333 0.00 0.00 41.45 1.89
3772 8608 9.802039 TTTCCTCATACTAACAACCTGTTTAAT 57.198 29.630 0.00 0.00 41.45 1.40
3773 8609 9.802039 ATTTCCTCATACTAACAACCTGTTTAA 57.198 29.630 0.00 0.00 41.45 1.52
3775 8611 9.975218 ATATTTCCTCATACTAACAACCTGTTT 57.025 29.630 0.00 0.00 41.45 2.83
3776 8612 9.614792 GATATTTCCTCATACTAACAACCTGTT 57.385 33.333 0.00 0.00 43.88 3.16
3777 8613 8.768397 TGATATTTCCTCATACTAACAACCTGT 58.232 33.333 0.00 0.00 0.00 4.00
3778 8614 9.784531 ATGATATTTCCTCATACTAACAACCTG 57.215 33.333 0.00 0.00 31.65 4.00
3800 8636 9.838339 ACAGTATTCGAGGAAAGAATTAATGAT 57.162 29.630 0.00 0.00 38.96 2.45
3801 8637 9.667107 AACAGTATTCGAGGAAAGAATTAATGA 57.333 29.630 0.00 0.00 38.96 2.57
3802 8638 9.708222 CAACAGTATTCGAGGAAAGAATTAATG 57.292 33.333 0.00 0.00 38.96 1.90
3803 8639 8.893727 CCAACAGTATTCGAGGAAAGAATTAAT 58.106 33.333 0.00 0.00 38.96 1.40
3804 8640 7.881232 ACCAACAGTATTCGAGGAAAGAATTAA 59.119 33.333 0.00 0.00 38.96 1.40
3805 8641 7.333423 CACCAACAGTATTCGAGGAAAGAATTA 59.667 37.037 0.00 0.00 38.96 1.40
3806 8642 6.149474 CACCAACAGTATTCGAGGAAAGAATT 59.851 38.462 0.00 0.00 38.96 2.17
3807 8643 5.643777 CACCAACAGTATTCGAGGAAAGAAT 59.356 40.000 0.00 0.00 40.88 2.40
3808 8644 4.994852 CACCAACAGTATTCGAGGAAAGAA 59.005 41.667 0.00 0.00 0.00 2.52
3809 8645 4.562757 CCACCAACAGTATTCGAGGAAAGA 60.563 45.833 0.00 0.00 0.00 2.52
3810 8646 3.684788 CCACCAACAGTATTCGAGGAAAG 59.315 47.826 0.00 0.00 0.00 2.62
3811 8647 3.670625 CCACCAACAGTATTCGAGGAAA 58.329 45.455 0.00 0.00 0.00 3.13
3812 8648 2.614481 GCCACCAACAGTATTCGAGGAA 60.614 50.000 0.00 0.00 0.00 3.36
3813 8649 1.066430 GCCACCAACAGTATTCGAGGA 60.066 52.381 0.00 0.00 0.00 3.71
3814 8650 1.369625 GCCACCAACAGTATTCGAGG 58.630 55.000 0.00 0.00 0.00 4.63
3815 8651 1.066143 AGGCCACCAACAGTATTCGAG 60.066 52.381 5.01 0.00 0.00 4.04
3816 8652 0.981183 AGGCCACCAACAGTATTCGA 59.019 50.000 5.01 0.00 0.00 3.71
3817 8653 1.468520 CAAGGCCACCAACAGTATTCG 59.531 52.381 5.01 0.00 0.00 3.34
3818 8654 2.514803 ACAAGGCCACCAACAGTATTC 58.485 47.619 5.01 0.00 0.00 1.75
3819 8655 2.675658 ACAAGGCCACCAACAGTATT 57.324 45.000 5.01 0.00 0.00 1.89
3820 8656 4.016444 CAATACAAGGCCACCAACAGTAT 58.984 43.478 5.01 0.00 0.00 2.12
3821 8657 3.073209 TCAATACAAGGCCACCAACAGTA 59.927 43.478 5.01 0.00 0.00 2.74
3822 8658 2.158534 TCAATACAAGGCCACCAACAGT 60.159 45.455 5.01 0.00 0.00 3.55
3823 8659 2.513753 TCAATACAAGGCCACCAACAG 58.486 47.619 5.01 0.00 0.00 3.16
3824 8660 2.666272 TCAATACAAGGCCACCAACA 57.334 45.000 5.01 0.00 0.00 3.33
3825 8661 2.825532 ACATCAATACAAGGCCACCAAC 59.174 45.455 5.01 0.00 0.00 3.77
3826 8662 3.168035 ACATCAATACAAGGCCACCAA 57.832 42.857 5.01 0.00 0.00 3.67
3827 8663 2.897271 ACATCAATACAAGGCCACCA 57.103 45.000 5.01 0.00 0.00 4.17
3828 8664 5.407502 GTTTTACATCAATACAAGGCCACC 58.592 41.667 5.01 0.00 0.00 4.61
3829 8665 5.092781 CGTTTTACATCAATACAAGGCCAC 58.907 41.667 5.01 0.00 0.00 5.01
3830 8666 4.762765 ACGTTTTACATCAATACAAGGCCA 59.237 37.500 5.01 0.00 0.00 5.36
3831 8667 5.305139 ACGTTTTACATCAATACAAGGCC 57.695 39.130 0.00 0.00 0.00 5.19
3841 8677 9.483916 CCACTATGGAATATACGTTTTACATCA 57.516 33.333 0.00 0.00 40.96 3.07
3842 8678 8.440833 GCCACTATGGAATATACGTTTTACATC 58.559 37.037 0.00 0.00 40.96 3.06
3843 8679 7.389607 GGCCACTATGGAATATACGTTTTACAT 59.610 37.037 0.00 0.68 40.96 2.29
3844 8680 6.707161 GGCCACTATGGAATATACGTTTTACA 59.293 38.462 0.00 0.00 40.96 2.41
3845 8681 6.932960 AGGCCACTATGGAATATACGTTTTAC 59.067 38.462 5.01 0.00 40.96 2.01
3846 8682 7.069877 AGGCCACTATGGAATATACGTTTTA 57.930 36.000 5.01 0.00 40.96 1.52
3847 8683 5.937111 AGGCCACTATGGAATATACGTTTT 58.063 37.500 5.01 0.00 40.96 2.43
3848 8684 5.562298 AGGCCACTATGGAATATACGTTT 57.438 39.130 5.01 0.00 40.96 3.60
3849 8685 5.562298 AAGGCCACTATGGAATATACGTT 57.438 39.130 5.01 0.00 40.96 3.99
3850 8686 5.562298 AAAGGCCACTATGGAATATACGT 57.438 39.130 5.01 0.00 40.96 3.57
3851 8687 9.832445 ATATAAAAGGCCACTATGGAATATACG 57.168 33.333 5.01 0.00 40.96 3.06
3863 8699 9.574516 CTCCAATTACTTATATAAAAGGCCACT 57.425 33.333 5.01 0.00 0.00 4.00
3864 8700 8.793592 CCTCCAATTACTTATATAAAAGGCCAC 58.206 37.037 5.01 0.00 0.00 5.01
3865 8701 7.947890 CCCTCCAATTACTTATATAAAAGGCCA 59.052 37.037 5.01 0.00 0.00 5.36
3866 8702 8.168058 TCCCTCCAATTACTTATATAAAAGGCC 58.832 37.037 0.00 0.00 0.00 5.19
3867 8703 9.232473 CTCCCTCCAATTACTTATATAAAAGGC 57.768 37.037 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.