Multiple sequence alignment - TraesCS7A01G540400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G540400 chr7A 100.000 7517 0 0 1 7517 717387824 717395340 0.000000e+00 13882.0
1 TraesCS7A01G540400 chr7A 82.551 1129 149 32 1480 2574 717070773 717071887 0.000000e+00 950.0
2 TraesCS7A01G540400 chr7A 82.625 800 111 17 6698 7481 717379861 717380648 0.000000e+00 682.0
3 TraesCS7A01G540400 chr7A 82.536 773 104 14 6698 7449 717257395 717258157 0.000000e+00 651.0
4 TraesCS7A01G540400 chr7A 83.310 707 93 19 1878 2573 717583042 717583734 4.950000e-176 628.0
5 TraesCS7A01G540400 chr7A 80.280 857 134 24 1878 2712 717440049 717440892 1.390000e-171 614.0
6 TraesCS7A01G540400 chr7A 87.638 542 46 9 418 951 717578404 717578932 1.790000e-170 610.0
7 TraesCS7A01G540400 chr7A 80.988 668 92 27 1878 2531 717254088 717254734 1.460000e-136 497.0
8 TraesCS7A01G540400 chr7A 83.864 440 65 1 6694 7133 717593338 717593771 1.510000e-111 414.0
9 TraesCS7A01G540400 chr7A 79.004 562 109 8 6696 7252 717074769 717075326 7.120000e-100 375.0
10 TraesCS7A01G540400 chr7A 88.852 305 32 2 6320 6624 717593004 717593306 2.560000e-99 374.0
11 TraesCS7A01G540400 chr7A 84.426 366 40 9 7108 7464 717593776 717594133 2.010000e-90 344.0
12 TraesCS7A01G540400 chr7A 85.629 334 38 4 634 958 717578928 717579260 7.220000e-90 342.0
13 TraesCS7A01G540400 chr7A 81.139 281 51 2 6346 6624 717379301 717379581 2.730000e-54 224.0
14 TraesCS7A01G540400 chr7A 95.455 66 3 0 1 66 717578165 717578230 1.030000e-18 106.0
15 TraesCS7A01G540400 chr7A 75.904 166 32 8 2880 3042 546712059 546712219 2.250000e-10 78.7
16 TraesCS7A01G540400 chr7B 94.120 7075 323 48 492 7517 717542890 717535860 0.000000e+00 10674.0
17 TraesCS7A01G540400 chr7B 90.409 928 70 12 439 1356 717633944 717633026 0.000000e+00 1203.0
18 TraesCS7A01G540400 chr7B 84.401 1186 132 26 664 1829 717810062 717811214 0.000000e+00 1116.0
19 TraesCS7A01G540400 chr7B 84.401 1186 132 26 664 1829 717813985 717815137 0.000000e+00 1116.0
20 TraesCS7A01G540400 chr7B 84.284 999 125 17 6262 7252 717631769 717630795 0.000000e+00 946.0
21 TraesCS7A01G540400 chr7B 82.095 1117 162 29 1480 2572 718442905 718441803 0.000000e+00 920.0
22 TraesCS7A01G540400 chr7B 90.838 513 43 3 1891 2399 717632431 717631919 0.000000e+00 684.0
23 TraesCS7A01G540400 chr7B 93.679 443 28 0 1382 1824 717633029 717632587 0.000000e+00 664.0
24 TraesCS7A01G540400 chr7B 82.242 794 114 17 6704 7481 717886895 717886113 0.000000e+00 660.0
25 TraesCS7A01G540400 chr7B 84.490 677 87 15 1899 2563 717787823 717788493 0.000000e+00 652.0
26 TraesCS7A01G540400 chr7B 88.168 524 52 6 1338 1854 717787192 717787712 3.850000e-172 616.0
27 TraesCS7A01G540400 chr7B 83.285 694 91 16 1899 2574 717815275 717815961 3.850000e-172 616.0
28 TraesCS7A01G540400 chr7B 88.031 518 56 5 1878 2390 719627412 719627928 6.450000e-170 608.0
29 TraesCS7A01G540400 chr7B 81.658 736 115 13 6377 7099 717793804 717794532 1.810000e-165 593.0
30 TraesCS7A01G540400 chr7B 87.452 518 59 5 1881 2393 717658916 717658400 6.500000e-165 592.0
31 TraesCS7A01G540400 chr7B 85.235 596 57 12 1280 1868 719626766 719627337 1.090000e-162 584.0
32 TraesCS7A01G540400 chr7B 85.085 590 57 12 1286 1868 717659559 717658994 2.350000e-159 573.0
33 TraesCS7A01G540400 chr7B 84.643 560 78 8 677 1234 717660639 717660086 1.100000e-152 551.0
34 TraesCS7A01G540400 chr7B 84.545 550 77 8 677 1224 719625441 719625984 8.580000e-149 538.0
35 TraesCS7A01G540400 chr7B 81.003 658 94 23 1881 2527 718099168 718098531 1.880000e-135 494.0
36 TraesCS7A01G540400 chr7B 81.833 622 74 18 664 1272 717786595 717787190 3.150000e-133 486.0
37 TraesCS7A01G540400 chr7B 80.118 679 103 24 1862 2527 719431411 719432070 1.900000e-130 477.0
38 TraesCS7A01G540400 chr7B 77.146 897 154 34 6365 7252 718436359 718435505 2.450000e-129 473.0
39 TraesCS7A01G540400 chr7B 86.000 400 56 0 6700 7099 717817954 717818353 5.390000e-116 429.0
40 TraesCS7A01G540400 chr7B 86.885 366 29 9 418 780 717564878 717564529 7.070000e-105 392.0
41 TraesCS7A01G540400 chr7B 87.200 125 13 1 253 377 717634183 717634062 1.020000e-28 139.0
42 TraesCS7A01G540400 chr7B 97.368 76 2 0 266 341 717564953 717564878 6.120000e-26 130.0
43 TraesCS7A01G540400 chr7B 95.455 66 3 0 1 66 717565025 717564960 1.030000e-18 106.0
44 TraesCS7A01G540400 chr7B 93.056 72 5 0 214 285 717634360 717634289 1.030000e-18 106.0
45 TraesCS7A01G540400 chr7B 96.774 62 2 0 373 434 717661067 717661006 3.710000e-18 104.0
46 TraesCS7A01G540400 chr7B 96.774 62 2 0 373 434 719625013 719625074 3.710000e-18 104.0
47 TraesCS7A01G540400 chr7B 96.226 53 1 1 7466 7517 717886106 717886054 1.340000e-12 86.1
48 TraesCS7A01G540400 chr7B 87.273 55 7 0 2892 2946 602659394 602659340 6.300000e-06 63.9
49 TraesCS7A01G540400 chr7D 90.462 2338 196 17 1872 4196 621868271 621870594 0.000000e+00 3057.0
50 TraesCS7A01G540400 chr7D 86.121 1405 171 12 5845 7237 621878832 621880224 0.000000e+00 1493.0
51 TraesCS7A01G540400 chr7D 88.158 988 98 9 902 1873 621867223 621868207 0.000000e+00 1158.0
52 TraesCS7A01G540400 chr7D 86.258 473 62 3 6676 7148 3377575 3378044 1.870000e-140 510.0
53 TraesCS7A01G540400 chr7D 90.256 195 17 2 4234 4427 621876545 621876738 3.480000e-63 254.0
54 TraesCS7A01G540400 chr7D 86.916 214 17 6 7277 7481 621819582 621819793 5.870000e-56 230.0
55 TraesCS7A01G540400 chr7D 84.946 186 27 1 953 1138 3247326 3247142 3.580000e-43 187.0
56 TraesCS7A01G540400 chr7D 86.301 146 15 3 439 583 621867009 621867150 3.630000e-33 154.0
57 TraesCS7A01G540400 chr7D 80.203 197 33 3 955 1150 3366522 3366713 7.860000e-30 143.0
58 TraesCS7A01G540400 chr7D 90.476 84 7 1 295 377 621866788 621866871 7.970000e-20 110.0
59 TraesCS7A01G540400 chr7D 97.959 49 1 0 7469 7517 621819804 621819852 1.340000e-12 86.1
60 TraesCS7A01G540400 chr7D 74.854 171 32 6 2880 3039 555884825 555884655 4.870000e-07 67.6
61 TraesCS7A01G540400 chrUn 83.357 691 90 16 1902 2574 298335717 298335034 3.850000e-172 616.0
62 TraesCS7A01G540400 chrUn 78.534 573 113 9 6686 7252 289818477 289819045 1.190000e-97 368.0
63 TraesCS7A01G540400 chr3A 87.931 58 7 0 2878 2935 12227924 12227981 1.350000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G540400 chr7A 717387824 717395340 7516 False 13882.000000 13882 100.000000 1 7517 1 chr7A.!!$F2 7516
1 TraesCS7A01G540400 chr7A 717070773 717075326 4553 False 662.500000 950 80.777500 1480 7252 2 chr7A.!!$F4 5772
2 TraesCS7A01G540400 chr7A 717440049 717440892 843 False 614.000000 614 80.280000 1878 2712 1 chr7A.!!$F3 834
3 TraesCS7A01G540400 chr7A 717254088 717258157 4069 False 574.000000 651 81.762000 1878 7449 2 chr7A.!!$F5 5571
4 TraesCS7A01G540400 chr7A 717379301 717380648 1347 False 453.000000 682 81.882000 6346 7481 2 chr7A.!!$F6 1135
5 TraesCS7A01G540400 chr7A 717578165 717583734 5569 False 421.500000 628 88.008000 1 2573 4 chr7A.!!$F7 2572
6 TraesCS7A01G540400 chr7A 717593004 717594133 1129 False 377.333333 414 85.714000 6320 7464 3 chr7A.!!$F8 1144
7 TraesCS7A01G540400 chr7B 717535860 717542890 7030 True 10674.000000 10674 94.120000 492 7517 1 chr7B.!!$R2 7025
8 TraesCS7A01G540400 chr7B 718441803 718442905 1102 True 920.000000 920 82.095000 1480 2572 1 chr7B.!!$R5 1092
9 TraesCS7A01G540400 chr7B 717810062 717818353 8291 False 819.250000 1116 84.521750 664 7099 4 chr7B.!!$F4 6435
10 TraesCS7A01G540400 chr7B 717630795 717634360 3565 True 623.666667 1203 89.911000 214 7252 6 chr7B.!!$R7 7038
11 TraesCS7A01G540400 chr7B 717793804 717794532 728 False 593.000000 593 81.658000 6377 7099 1 chr7B.!!$F1 722
12 TraesCS7A01G540400 chr7B 717786595 717788493 1898 False 584.666667 652 84.830333 664 2563 3 chr7B.!!$F3 1899
13 TraesCS7A01G540400 chr7B 718098531 718099168 637 True 494.000000 494 81.003000 1881 2527 1 chr7B.!!$R3 646
14 TraesCS7A01G540400 chr7B 719431411 719432070 659 False 477.000000 477 80.118000 1862 2527 1 chr7B.!!$F2 665
15 TraesCS7A01G540400 chr7B 718435505 718436359 854 True 473.000000 473 77.146000 6365 7252 1 chr7B.!!$R4 887
16 TraesCS7A01G540400 chr7B 719625013 719627928 2915 False 458.500000 608 88.646250 373 2390 4 chr7B.!!$F5 2017
17 TraesCS7A01G540400 chr7B 717658400 717661067 2667 True 455.000000 592 88.488500 373 2393 4 chr7B.!!$R8 2020
18 TraesCS7A01G540400 chr7B 717886054 717886895 841 True 373.050000 660 89.234000 6704 7517 2 chr7B.!!$R9 813
19 TraesCS7A01G540400 chr7D 621866788 621870594 3806 False 1119.750000 3057 88.849250 295 4196 4 chr7D.!!$F4 3901
20 TraesCS7A01G540400 chr7D 621876545 621880224 3679 False 873.500000 1493 88.188500 4234 7237 2 chr7D.!!$F5 3003
21 TraesCS7A01G540400 chrUn 298335034 298335717 683 True 616.000000 616 83.357000 1902 2574 1 chrUn.!!$R1 672
22 TraesCS7A01G540400 chrUn 289818477 289819045 568 False 368.000000 368 78.534000 6686 7252 1 chrUn.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.031314 TCTTCTCGATCGATGCAGCC 59.969 55.000 19.78 0.0 0.00 4.85 F
111 112 0.031857 CTTCTCGATCGATGCAGCCT 59.968 55.000 19.78 0.0 0.00 4.58 F
357 493 0.394352 CAGAAACTTATGCCCCGGCT 60.394 55.000 7.35 0.0 42.51 5.52 F
504 738 1.152483 AGGCCAGGCTCTGCAAAAA 60.152 52.632 12.43 0.0 0.00 1.94 F
1706 8868 0.602638 TAGCACAGACCAAACAGCCG 60.603 55.000 0.00 0.0 0.00 5.52 F
1824 8988 2.543777 ACTGGTACGTTGTTGCATCT 57.456 45.000 0.00 0.0 0.00 2.90 F
3259 11544 0.682852 TAGTAGCAACACCGGCAACT 59.317 50.000 0.00 0.0 0.00 3.16 F
4694 14940 0.033366 TTCAGCAGACACTTAGCGCA 59.967 50.000 11.47 0.0 0.00 6.09 F
5564 15910 0.312416 CGCAGGAGGAGGATCTTACG 59.688 60.000 0.00 0.0 33.73 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1006 7275 0.833287 ATACGCTGCAGGACCTCAAT 59.167 50.000 17.12 0.00 0.00 2.57 R
1033 7302 1.056660 TTTGTCGGCTTCTCCCTTCT 58.943 50.000 0.00 0.00 0.00 2.85 R
1415 8481 1.282157 ACTCCCTGACCAACTAATGCC 59.718 52.381 0.00 0.00 0.00 4.40 R
1741 8905 5.947566 ACAGAGTAGTCTTTCTCTTACCTCC 59.052 44.000 0.00 0.00 38.74 4.30 R
3240 11525 0.682852 AGTTGCCGGTGTTGCTACTA 59.317 50.000 1.90 0.00 41.76 1.82 R
3704 12930 1.549950 GGAGATGGCAAAGGAACCCAA 60.550 52.381 0.00 0.00 31.43 4.12 R
4870 15128 1.151777 CTCGACGGCATGGCGTAATT 61.152 55.000 41.96 23.77 0.00 1.40 R
6110 16562 0.179076 TGCTGTGTGTGTGTGAGGAG 60.179 55.000 0.00 0.00 0.00 3.69 R
6962 17762 0.794229 GTTCATTGGCACGACGCATG 60.794 55.000 0.00 0.00 45.17 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.232298 GAGAGGAAGGTCAGGTGGCG 62.232 65.000 0.00 0.00 0.00 5.69
57 58 6.162777 GCAAATCCAGATCCAGAGTAGATAC 58.837 44.000 0.00 0.00 0.00 2.24
66 67 4.970711 TCCAGAGTAGATACGTTCTAGGG 58.029 47.826 0.00 1.78 37.62 3.53
67 68 4.411540 TCCAGAGTAGATACGTTCTAGGGT 59.588 45.833 0.00 0.00 37.62 4.34
68 69 4.756135 CCAGAGTAGATACGTTCTAGGGTC 59.244 50.000 0.00 0.00 37.62 4.46
71 72 1.316651 AGATACGTTCTAGGGTCGCC 58.683 55.000 0.00 0.00 30.96 5.54
73 74 2.068277 ATACGTTCTAGGGTCGCCGC 62.068 60.000 0.00 0.00 0.00 6.53
74 75 4.867599 CGTTCTAGGGTCGCCGCC 62.868 72.222 0.00 0.00 0.00 6.13
75 76 4.867599 GTTCTAGGGTCGCCGCCG 62.868 72.222 0.00 0.00 0.00 6.46
95 96 2.877691 GGCATGGCCGTTGTCTTC 59.122 61.111 8.35 0.00 39.62 2.87
96 97 1.675641 GGCATGGCCGTTGTCTTCT 60.676 57.895 8.35 0.00 39.62 2.85
97 98 1.648467 GGCATGGCCGTTGTCTTCTC 61.648 60.000 8.35 0.00 39.62 2.87
99 100 0.389817 CATGGCCGTTGTCTTCTCGA 60.390 55.000 0.00 0.00 0.00 4.04
100 101 0.537188 ATGGCCGTTGTCTTCTCGAT 59.463 50.000 0.00 0.00 0.00 3.59
101 102 0.108804 TGGCCGTTGTCTTCTCGATC 60.109 55.000 0.00 0.00 0.00 3.69
102 103 1.140407 GGCCGTTGTCTTCTCGATCG 61.140 60.000 9.36 9.36 0.00 3.69
103 104 0.179171 GCCGTTGTCTTCTCGATCGA 60.179 55.000 18.32 18.32 0.00 3.59
105 106 2.112522 CCGTTGTCTTCTCGATCGATG 58.887 52.381 19.78 12.76 0.00 3.84
106 107 1.514811 CGTTGTCTTCTCGATCGATGC 59.485 52.381 19.78 7.78 0.00 3.91
107 108 2.530177 GTTGTCTTCTCGATCGATGCA 58.470 47.619 19.78 10.22 0.00 3.96
108 109 2.481903 TGTCTTCTCGATCGATGCAG 57.518 50.000 19.78 14.23 0.00 4.41
110 111 0.031314 TCTTCTCGATCGATGCAGCC 59.969 55.000 19.78 0.00 0.00 4.85
111 112 0.031857 CTTCTCGATCGATGCAGCCT 59.968 55.000 19.78 0.00 0.00 4.58
114 115 0.663867 CTCGATCGATGCAGCCTCAG 60.664 60.000 19.78 0.00 0.00 3.35
115 116 1.664017 CGATCGATGCAGCCTCAGG 60.664 63.158 10.26 0.00 0.00 3.86
126 127 4.463879 CCTCAGGCGGCTGGACAG 62.464 72.222 35.20 25.33 0.00 3.51
137 138 3.217242 CTGGACAGCAGTAAAGCGT 57.783 52.632 0.00 0.00 40.15 5.07
138 139 1.071605 CTGGACAGCAGTAAAGCGTC 58.928 55.000 0.00 0.00 40.15 5.19
140 141 1.336887 TGGACAGCAGTAAAGCGTCTC 60.337 52.381 0.00 0.00 40.15 3.36
154 155 2.579207 CGTCTCGCCCAGATCTAAAA 57.421 50.000 0.00 0.00 32.08 1.52
155 156 2.194271 CGTCTCGCCCAGATCTAAAAC 58.806 52.381 0.00 0.00 32.08 2.43
157 158 3.676324 CGTCTCGCCCAGATCTAAAACTT 60.676 47.826 0.00 0.00 32.08 2.66
158 159 4.439700 CGTCTCGCCCAGATCTAAAACTTA 60.440 45.833 0.00 0.00 32.08 2.24
161 162 2.864343 CGCCCAGATCTAAAACTTACGG 59.136 50.000 0.00 0.00 0.00 4.02
162 163 3.429822 CGCCCAGATCTAAAACTTACGGA 60.430 47.826 0.00 0.00 0.00 4.69
165 166 4.511826 CCCAGATCTAAAACTTACGGATGC 59.488 45.833 0.00 0.00 0.00 3.91
166 167 4.511826 CCAGATCTAAAACTTACGGATGCC 59.488 45.833 0.00 0.00 0.00 4.40
193 194 2.046217 GCCCGTCTGAGGTTTCCC 60.046 66.667 0.00 0.00 0.00 3.97
195 196 2.669240 CCGTCTGAGGTTTCCCCC 59.331 66.667 0.00 0.00 0.00 5.40
209 210 3.164269 CCCCCATCCAGCTAGCGT 61.164 66.667 9.55 0.00 0.00 5.07
213 214 0.815615 CCCATCCAGCTAGCGTTTCC 60.816 60.000 9.55 0.00 0.00 3.13
222 223 4.576463 CCAGCTAGCGTTTCCATTAATCTT 59.424 41.667 9.55 0.00 0.00 2.40
223 224 5.066505 CCAGCTAGCGTTTCCATTAATCTTT 59.933 40.000 9.55 0.00 0.00 2.52
260 261 3.803082 CACCACTTGGCGCCATCG 61.803 66.667 33.25 25.91 39.32 3.84
287 288 4.219507 CAGATCTGACCACTCAAGTGTACT 59.780 45.833 18.34 0.00 44.21 2.73
308 444 4.465660 ACTCTGCTTCTTCTTCTGATGCTA 59.534 41.667 0.00 0.00 36.14 3.49
341 477 3.319405 ACTCTGCTTCTTTCTTCGTCAGA 59.681 43.478 0.00 0.00 0.00 3.27
357 493 0.394352 CAGAAACTTATGCCCCGGCT 60.394 55.000 7.35 0.00 42.51 5.52
504 738 1.152483 AGGCCAGGCTCTGCAAAAA 60.152 52.632 12.43 0.00 0.00 1.94
614 857 2.247637 GCGTCTTTTTAATTCCGTGGC 58.752 47.619 0.00 0.00 0.00 5.01
642 963 4.016444 TGGTAGAAGGGCATTTTTAGCAG 58.984 43.478 5.54 0.00 0.00 4.24
787 4375 7.673926 AGGGTTTTATTACATCAGTGGACAATT 59.326 33.333 0.00 0.00 0.00 2.32
796 4384 5.649395 ACATCAGTGGACAATTTGTATCAGG 59.351 40.000 1.15 1.10 0.00 3.86
824 4414 5.698545 GGTTTGTGCTAAATATTTGTTGGCA 59.301 36.000 11.05 11.94 39.77 4.92
837 4427 6.730960 ATTTGTTGGCACATGAATGATTTC 57.269 33.333 0.00 0.00 39.30 2.17
844 4434 3.698040 GCACATGAATGATTTCCTGGAGT 59.302 43.478 0.00 0.00 33.30 3.85
856 4446 4.771114 TTCCTGGAGTCAACTTTCTTGA 57.229 40.909 0.00 0.00 0.00 3.02
869 4459 9.394477 GTCAACTTTCTTGAACAATTACCATAC 57.606 33.333 0.00 0.00 0.00 2.39
896 4493 5.415077 TGCTATAGAAAGGTACTAGCGATCC 59.585 44.000 3.21 0.00 38.49 3.36
915 4512 2.693591 TCCAGTCAAACGTCAGTTCTCT 59.306 45.455 0.00 0.00 40.18 3.10
918 4515 4.859798 CCAGTCAAACGTCAGTTCTCTATC 59.140 45.833 0.00 0.00 40.18 2.08
924 4521 3.696898 ACGTCAGTTCTCTATCGAATGC 58.303 45.455 0.00 0.00 0.00 3.56
930 4527 3.056304 GTTCTCTATCGAATGCTGCTCC 58.944 50.000 0.00 0.00 0.00 4.70
944 4547 2.427506 CTGCTCCAGTAGGAACAAACC 58.572 52.381 0.00 0.00 45.19 3.27
982 7247 8.362639 AGTGTTGAAAGTGCATATTCTGAAATT 58.637 29.630 13.49 0.00 0.00 1.82
995 7260 3.904571 TCTGAAATTGATTGCACAGCAC 58.095 40.909 0.00 0.00 38.71 4.40
1006 7275 3.557228 TGCACAGCACATACATGGATA 57.443 42.857 0.00 0.00 31.71 2.59
1033 7302 3.005472 GGTCCTGCAGCGTATACTTGATA 59.995 47.826 8.66 0.00 0.00 2.15
1038 7307 4.871513 TGCAGCGTATACTTGATAGAAGG 58.128 43.478 0.56 0.00 0.00 3.46
1220 8253 6.656632 TTCTTATATCGACTTGAGCCTCAT 57.343 37.500 0.00 0.00 0.00 2.90
1293 8327 4.394729 CTTAGTTTTTGGGGTACTCTGCA 58.605 43.478 0.00 0.00 0.00 4.41
1331 8365 5.821470 CAGTCAATCAGGCAGATTCTTGTAT 59.179 40.000 1.71 0.00 45.06 2.29
1415 8481 2.263741 GGCACAACCCTGCTCACAG 61.264 63.158 0.00 0.00 44.05 3.66
1453 8546 1.357420 AGTCCCAAATATGTGGTGGCA 59.643 47.619 11.17 0.00 36.90 4.92
1706 8868 0.602638 TAGCACAGACCAAACAGCCG 60.603 55.000 0.00 0.00 0.00 5.52
1741 8905 6.255215 AGGATCAAAACAACATATTTACGCG 58.745 36.000 3.53 3.53 0.00 6.01
1824 8988 2.543777 ACTGGTACGTTGTTGCATCT 57.456 45.000 0.00 0.00 0.00 2.90
1876 9134 7.385752 TCTTTTTCCATTCATTTCATGTTCAGC 59.614 33.333 0.00 0.00 0.00 4.26
2087 9404 3.470709 AGACAATGATATGGTGCCGAAG 58.529 45.455 0.00 0.00 0.00 3.79
2189 9511 7.970061 GCTATGCATCAAAAGAACATGTTTCTA 59.030 33.333 13.36 0.00 0.00 2.10
3004 11287 4.630644 ATGTCACTCAATGGAGACTTGT 57.369 40.909 3.42 0.00 44.26 3.16
3104 11388 8.379902 GTTGTGGAAGTTGTTTATTCTGTTTTG 58.620 33.333 0.00 0.00 0.00 2.44
3121 11405 4.509970 TGTTTTGTACGAGACCATGTCAAG 59.490 41.667 1.49 0.00 34.60 3.02
3259 11544 0.682852 TAGTAGCAACACCGGCAACT 59.317 50.000 0.00 0.00 0.00 3.16
3383 12608 5.760253 CCTTAGTGAATTGTGACTTGTGAGT 59.240 40.000 0.00 0.00 39.32 3.41
3714 12940 1.726192 GGTGGGTCCTTGGGTTCCTT 61.726 60.000 0.00 0.00 0.00 3.36
3846 13072 3.650942 TCTACTTGTCCCCATGACTTGTT 59.349 43.478 0.00 0.00 44.75 2.83
3880 13106 2.732597 GCGGATAGCGATGATGGAGTAC 60.733 54.545 0.00 0.00 35.41 2.73
3881 13107 2.488153 CGGATAGCGATGATGGAGTACA 59.512 50.000 0.00 0.00 0.00 2.90
3955 13182 1.134694 GGGTTTGCTTCATCGACGC 59.865 57.895 0.00 0.00 0.00 5.19
4011 13238 1.374252 CCCAGAAACCGTCAGTCCG 60.374 63.158 0.00 0.00 0.00 4.79
4065 13292 8.642432 TGAATCTATAGTAGCAAGTGTTAGCAT 58.358 33.333 0.00 0.00 0.00 3.79
4417 14018 5.640732 CCTTGTAAACATAGCACCATCAAC 58.359 41.667 0.00 0.00 0.00 3.18
4578 14823 2.462723 GAAGCCACCTTCTAGGAGACT 58.537 52.381 0.00 0.00 43.31 3.24
4589 14834 7.354125 ACCTTCTAGGAGACTAAGTGTCATCG 61.354 46.154 0.00 0.00 43.83 3.84
4600 14845 1.618837 AGTGTCATCGCACCTACAACT 59.381 47.619 0.00 0.00 40.04 3.16
4694 14940 0.033366 TTCAGCAGACACTTAGCGCA 59.967 50.000 11.47 0.00 0.00 6.09
4779 15025 0.727398 GTCAACGCATAGACCTTGCC 59.273 55.000 0.00 0.00 36.75 4.52
4780 15026 0.323302 TCAACGCATAGACCTTGCCA 59.677 50.000 0.00 0.00 36.75 4.92
4781 15027 0.729116 CAACGCATAGACCTTGCCAG 59.271 55.000 0.00 0.00 36.75 4.85
4783 15029 2.182842 CGCATAGACCTTGCCAGGC 61.183 63.158 3.66 3.66 45.56 4.85
4784 15030 1.825622 GCATAGACCTTGCCAGGCC 60.826 63.158 9.64 0.00 45.56 5.19
4785 15031 1.918253 CATAGACCTTGCCAGGCCT 59.082 57.895 9.64 0.00 45.56 5.19
4786 15032 0.465097 CATAGACCTTGCCAGGCCTG 60.465 60.000 26.87 26.87 45.56 4.85
4787 15033 2.276309 ATAGACCTTGCCAGGCCTGC 62.276 60.000 28.39 22.00 45.56 4.85
4870 15128 4.988716 AGTCCGTGCCGAGACCCA 62.989 66.667 10.29 0.00 33.29 4.51
4955 15213 0.983378 ACCCCTACAGCCATCACCTC 60.983 60.000 0.00 0.00 0.00 3.85
5368 15713 3.809013 GTGATCCGCCACCCCCAT 61.809 66.667 0.00 0.00 0.00 4.00
5430 15776 2.762459 AGGATAAGCCACCGCCGA 60.762 61.111 0.00 0.00 40.02 5.54
5539 15885 4.335647 ACCGTGCTGCTGGAAGGG 62.336 66.667 19.28 11.03 37.47 3.95
5564 15910 0.312416 CGCAGGAGGAGGATCTTACG 59.688 60.000 0.00 0.00 33.73 3.18
5745 16096 2.661718 GTTTCTTCCCTTGGTTGTCCA 58.338 47.619 0.00 0.00 42.66 4.02
5746 16097 2.358322 TTCTTCCCTTGGTTGTCCAC 57.642 50.000 0.00 0.00 44.22 4.02
5823 16174 6.070881 ACTCAGTTGAGAATTGAGATGCTACT 60.071 38.462 15.63 0.00 45.11 2.57
6108 16560 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
6110 16562 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
6113 16565 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
6114 16566 4.078922 TCTCTCTCTCTCTCTCTCTCTCCT 60.079 50.000 0.00 0.00 0.00 3.69
6416 16968 2.769209 ACTTAGGAGATGGAGGCACAT 58.231 47.619 0.00 0.00 0.00 3.21
6514 17066 3.434309 CAGGAAGTTGACCCATCCAAAT 58.566 45.455 0.00 0.00 34.30 2.32
6747 17547 4.244066 CTCGGAAGATGATATGCTTGGAG 58.756 47.826 0.00 0.00 40.84 3.86
6764 17564 1.517242 GAGTTGAGCCACTCCAACTG 58.483 55.000 11.81 0.00 37.78 3.16
6772 17572 1.615392 GCCACTCCAACTGCATTTTCT 59.385 47.619 0.00 0.00 0.00 2.52
6785 17585 8.389603 CAACTGCATTTTCTTTTTGAGCTTAAA 58.610 29.630 0.00 0.00 0.00 1.52
6820 17620 2.095059 GTGCACTTCAGCTAACCAATGG 60.095 50.000 10.32 0.00 34.99 3.16
6839 17639 4.574674 TGGGACAGATTCTTACATTGCT 57.425 40.909 0.00 0.00 0.00 3.91
6866 17666 5.687166 ACATTGAAAATACGAGTCCCCTA 57.313 39.130 0.00 0.00 0.00 3.53
6874 17674 7.289317 TGAAAATACGAGTCCCCTATCATACTT 59.711 37.037 0.00 0.00 0.00 2.24
6893 17693 1.893808 CACACAGCCGCAGAAAGGT 60.894 57.895 0.00 0.00 0.00 3.50
6897 17697 1.131126 CACAGCCGCAGAAAGGTATTG 59.869 52.381 0.00 0.00 0.00 1.90
6939 17739 4.216257 GGTGTGTTGAGATAACAATGCAGT 59.784 41.667 0.00 0.00 32.36 4.40
6962 17762 2.111251 GGCAAGGCTCCGGGATAC 59.889 66.667 0.00 0.00 0.00 2.24
6967 17767 2.357517 GGCTCCGGGATACATGCG 60.358 66.667 0.00 0.00 39.74 4.73
7099 17905 4.808364 CGTGAATTTGGATGTGGTTTTTGT 59.192 37.500 0.00 0.00 0.00 2.83
7286 18137 3.131396 AGCTTTGTACCAGAACTGAACG 58.869 45.455 3.19 0.00 0.00 3.95
7334 18185 4.928615 AGAGAGATCGCTTTCTTCAACAAG 59.071 41.667 0.00 0.00 32.05 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.637947 GATTTGCAGAGGAAGAGGGAC 58.362 52.381 0.00 0.00 0.00 4.46
57 58 4.867599 GGCGGCGACCCTAGAACG 62.868 72.222 12.98 0.00 0.00 3.95
78 79 1.648467 GAGAAGACAACGGCCATGCC 61.648 60.000 2.24 0.00 46.75 4.40
79 80 1.796796 GAGAAGACAACGGCCATGC 59.203 57.895 2.24 0.00 0.00 4.06
80 81 0.389817 TCGAGAAGACAACGGCCATG 60.390 55.000 2.24 3.30 0.00 3.66
83 84 1.140407 CGATCGAGAAGACAACGGCC 61.140 60.000 10.26 0.00 0.00 6.13
84 85 0.179171 TCGATCGAGAAGACAACGGC 60.179 55.000 15.15 0.00 0.00 5.68
85 86 2.112522 CATCGATCGAGAAGACAACGG 58.887 52.381 23.84 0.00 0.00 4.44
86 87 1.514811 GCATCGATCGAGAAGACAACG 59.485 52.381 23.84 4.31 0.00 4.10
87 88 2.530177 TGCATCGATCGAGAAGACAAC 58.470 47.619 23.84 6.72 0.00 3.32
88 89 2.802256 CTGCATCGATCGAGAAGACAA 58.198 47.619 23.84 0.00 0.00 3.18
89 90 1.534805 GCTGCATCGATCGAGAAGACA 60.535 52.381 23.84 14.44 0.00 3.41
90 91 1.127701 GCTGCATCGATCGAGAAGAC 58.872 55.000 23.84 10.74 0.00 3.01
92 93 0.031857 AGGCTGCATCGATCGAGAAG 59.968 55.000 23.84 19.35 0.00 2.85
93 94 0.031314 GAGGCTGCATCGATCGAGAA 59.969 55.000 23.84 10.17 0.00 2.87
95 96 0.663867 CTGAGGCTGCATCGATCGAG 60.664 60.000 23.84 15.68 0.00 4.04
96 97 1.361632 CTGAGGCTGCATCGATCGA 59.638 57.895 21.86 21.86 0.00 3.59
97 98 1.664017 CCTGAGGCTGCATCGATCG 60.664 63.158 9.36 9.36 0.00 3.69
99 100 2.110627 GCCTGAGGCTGCATCGAT 59.889 61.111 17.96 0.00 46.69 3.59
120 121 0.679505 AGACGCTTTACTGCTGTCCA 59.320 50.000 0.00 0.00 37.27 4.02
121 122 1.351153 GAGACGCTTTACTGCTGTCC 58.649 55.000 0.00 0.00 37.27 4.02
122 123 0.985549 CGAGACGCTTTACTGCTGTC 59.014 55.000 0.00 0.00 37.04 3.51
123 124 3.108521 CGAGACGCTTTACTGCTGT 57.891 52.632 0.66 0.66 0.00 4.40
137 138 4.439700 CGTAAGTTTTAGATCTGGGCGAGA 60.440 45.833 5.18 0.46 34.25 4.04
138 139 3.797256 CGTAAGTTTTAGATCTGGGCGAG 59.203 47.826 5.18 0.00 0.00 5.03
140 141 2.864343 CCGTAAGTTTTAGATCTGGGCG 59.136 50.000 5.18 0.00 0.00 6.13
142 143 4.511826 GCATCCGTAAGTTTTAGATCTGGG 59.488 45.833 5.18 0.00 0.00 4.45
143 144 4.511826 GGCATCCGTAAGTTTTAGATCTGG 59.488 45.833 5.18 0.00 0.00 3.86
145 146 4.369182 CGGCATCCGTAAGTTTTAGATCT 58.631 43.478 0.00 0.00 42.73 2.75
146 147 3.493503 CCGGCATCCGTAAGTTTTAGATC 59.506 47.826 4.47 0.00 46.80 2.75
148 149 2.896168 CCGGCATCCGTAAGTTTTAGA 58.104 47.619 4.47 0.00 46.80 2.10
149 150 1.329599 GCCGGCATCCGTAAGTTTTAG 59.670 52.381 24.80 0.00 46.80 1.85
150 151 1.371595 GCCGGCATCCGTAAGTTTTA 58.628 50.000 24.80 0.00 46.80 1.52
151 152 1.641123 CGCCGGCATCCGTAAGTTTT 61.641 55.000 28.98 0.00 46.80 2.43
152 153 2.104253 CGCCGGCATCCGTAAGTTT 61.104 57.895 28.98 0.00 46.80 2.66
153 154 2.510691 CGCCGGCATCCGTAAGTT 60.511 61.111 28.98 0.00 46.80 2.66
154 155 4.524318 CCGCCGGCATCCGTAAGT 62.524 66.667 28.98 0.00 46.80 2.24
173 174 4.699522 AAACCTCAGACGGGCGGC 62.700 66.667 0.00 0.00 0.00 6.53
175 176 2.434359 GGAAACCTCAGACGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
193 194 0.815615 GAAACGCTAGCTGGATGGGG 60.816 60.000 13.93 0.00 0.00 4.96
195 196 0.107703 TGGAAACGCTAGCTGGATGG 60.108 55.000 13.93 0.00 0.00 3.51
196 197 1.959042 ATGGAAACGCTAGCTGGATG 58.041 50.000 13.93 0.00 0.00 3.51
197 198 2.717639 AATGGAAACGCTAGCTGGAT 57.282 45.000 13.93 0.00 0.00 3.41
198 199 3.620427 TTAATGGAAACGCTAGCTGGA 57.380 42.857 13.93 0.00 0.00 3.86
199 200 4.130118 AGATTAATGGAAACGCTAGCTGG 58.870 43.478 13.93 0.00 0.00 4.85
200 201 5.741388 AAGATTAATGGAAACGCTAGCTG 57.259 39.130 13.93 9.03 0.00 4.24
201 202 5.297029 GGAAAGATTAATGGAAACGCTAGCT 59.703 40.000 13.93 0.00 0.00 3.32
202 203 5.297029 AGGAAAGATTAATGGAAACGCTAGC 59.703 40.000 4.06 4.06 0.00 3.42
203 204 6.719365 CAGGAAAGATTAATGGAAACGCTAG 58.281 40.000 0.00 0.00 0.00 3.42
204 205 5.065988 GCAGGAAAGATTAATGGAAACGCTA 59.934 40.000 0.00 0.00 0.00 4.26
205 206 4.142381 GCAGGAAAGATTAATGGAAACGCT 60.142 41.667 0.00 0.00 0.00 5.07
206 207 4.105486 GCAGGAAAGATTAATGGAAACGC 58.895 43.478 0.00 0.00 0.00 4.84
208 209 6.091305 GCAAAGCAGGAAAGATTAATGGAAAC 59.909 38.462 0.00 0.00 0.00 2.78
209 210 6.165577 GCAAAGCAGGAAAGATTAATGGAAA 58.834 36.000 0.00 0.00 0.00 3.13
213 214 7.201582 GGAAATGCAAAGCAGGAAAGATTAATG 60.202 37.037 0.00 0.00 43.65 1.90
222 223 1.895131 GAGGGAAATGCAAAGCAGGAA 59.105 47.619 0.00 0.00 43.65 3.36
223 224 1.549203 GAGGGAAATGCAAAGCAGGA 58.451 50.000 0.00 0.00 43.65 3.86
260 261 1.189752 TGAGTGGTCAGATCTGGAGC 58.810 55.000 22.42 17.39 0.00 4.70
287 288 3.977134 AGCATCAGAAGAAGAAGCAGA 57.023 42.857 0.00 0.00 0.00 4.26
308 444 0.905357 AAGCAGAGTAGGCCGTGAAT 59.095 50.000 0.00 0.00 0.00 2.57
341 477 0.394352 CAGAGCCGGGGCATAAGTTT 60.394 55.000 12.97 0.00 44.88 2.66
426 618 3.962694 AAGGGCAGCAGCAGCAGA 61.963 61.111 12.41 0.00 45.49 4.26
434 626 2.718487 AATGGCAGACAAGGGCAGCA 62.718 55.000 0.00 0.00 44.45 4.41
437 629 0.680618 CAAAATGGCAGACAAGGGCA 59.319 50.000 0.00 0.00 45.36 5.36
514 748 6.800890 AGCTCCCCGGGATTAATTAATTAAT 58.199 36.000 26.27 26.27 43.54 1.40
515 749 6.208840 AGCTCCCCGGGATTAATTAATTAA 57.791 37.500 26.32 20.11 36.75 1.40
642 963 8.352752 GGCTAAAAATGCCTAATTTGATGTAC 57.647 34.615 0.00 0.00 46.38 2.90
787 4375 2.773487 CACAAACCGGACCTGATACAA 58.227 47.619 9.46 0.00 0.00 2.41
796 4384 5.705902 ACAAATATTTAGCACAAACCGGAC 58.294 37.500 9.46 0.00 0.00 4.79
824 4414 5.183530 TGACTCCAGGAAATCATTCATGT 57.816 39.130 0.00 0.00 43.91 3.21
826 4416 5.824421 AGTTGACTCCAGGAAATCATTCAT 58.176 37.500 4.24 0.00 37.29 2.57
837 4427 4.199310 TGTTCAAGAAAGTTGACTCCAGG 58.801 43.478 0.00 0.00 0.00 4.45
844 4434 8.286800 CGTATGGTAATTGTTCAAGAAAGTTGA 58.713 33.333 0.00 0.00 0.00 3.18
856 4446 6.755206 TCTATAGCAGCGTATGGTAATTGTT 58.245 36.000 5.91 0.00 44.64 2.83
869 4459 4.477780 GCTAGTACCTTTCTATAGCAGCG 58.522 47.826 0.00 0.00 38.92 5.18
896 4493 4.555360 CGATAGAGAACTGACGTTTGACTG 59.445 45.833 0.00 0.00 39.76 3.51
915 4512 2.297315 CCTACTGGAGCAGCATTCGATA 59.703 50.000 0.00 0.00 34.37 2.92
918 4515 0.461548 TCCTACTGGAGCAGCATTCG 59.538 55.000 0.00 0.00 37.46 3.34
982 7247 2.424246 CCATGTATGTGCTGTGCAATCA 59.576 45.455 0.00 0.00 41.47 2.57
995 7260 4.940046 GCAGGACCTCAATATCCATGTATG 59.060 45.833 0.00 0.00 37.47 2.39
1006 7275 0.833287 ATACGCTGCAGGACCTCAAT 59.167 50.000 17.12 0.00 0.00 2.57
1033 7302 1.056660 TTTGTCGGCTTCTCCCTTCT 58.943 50.000 0.00 0.00 0.00 2.85
1038 7307 4.060038 TGATAGATTTGTCGGCTTCTCC 57.940 45.455 0.00 0.00 0.00 3.71
1293 8327 9.664332 GCCTGATTGACTGACTTCAATATATAT 57.336 33.333 0.00 0.00 44.59 0.86
1415 8481 1.282157 ACTCCCTGACCAACTAATGCC 59.718 52.381 0.00 0.00 0.00 4.40
1565 8724 6.349300 TCCTTATCCTCTTTACAGCAACATC 58.651 40.000 0.00 0.00 0.00 3.06
1706 8868 7.206687 TGTTGTTTTGATCCTTTGATTGGTAC 58.793 34.615 0.00 0.00 0.00 3.34
1741 8905 5.947566 ACAGAGTAGTCTTTCTCTTACCTCC 59.052 44.000 0.00 0.00 38.74 4.30
1876 9134 9.135843 CAACAATGGATTTATGCAAGCTATATG 57.864 33.333 0.00 0.00 0.00 1.78
1916 9227 9.383519 TCATCTAAATAGAAAAAGTAGCAGTGG 57.616 33.333 0.00 0.00 35.69 4.00
2087 9404 7.278868 AGTCTCGATAAACCAAAATCTGTGATC 59.721 37.037 0.00 0.00 0.00 2.92
2189 9511 7.218228 TCAAACAATGTGAGAGTAAATGCAT 57.782 32.000 0.00 0.00 0.00 3.96
2534 9984 7.230849 ACATCACATGGCTTATTTTTCTCAA 57.769 32.000 0.00 0.00 33.60 3.02
2897 10555 5.980116 CGATTGGGACATAACTAAGTCTCAG 59.020 44.000 0.00 0.00 45.20 3.35
3104 11388 2.159226 CCCTCTTGACATGGTCTCGTAC 60.159 54.545 0.00 0.00 33.15 3.67
3240 11525 0.682852 AGTTGCCGGTGTTGCTACTA 59.317 50.000 1.90 0.00 41.76 1.82
3242 11527 1.866925 GAGTTGCCGGTGTTGCTAC 59.133 57.895 1.90 0.00 35.19 3.58
3259 11544 1.686355 AAACAAGTTGGTGCCATCGA 58.314 45.000 7.96 0.00 0.00 3.59
3659 12885 5.529060 CCCTTCTAAATTCATGCTCACCTAC 59.471 44.000 0.00 0.00 0.00 3.18
3704 12930 1.549950 GGAGATGGCAAAGGAACCCAA 60.550 52.381 0.00 0.00 31.43 4.12
3880 13106 2.184830 CGAGCCATCCAGCCATGTG 61.185 63.158 0.00 0.00 0.00 3.21
3881 13107 2.191375 CGAGCCATCCAGCCATGT 59.809 61.111 0.00 0.00 0.00 3.21
4065 13292 6.299805 ACCAGACTGCATTAGAGATAACAA 57.700 37.500 0.00 0.00 0.00 2.83
4232 13827 3.814842 TGTCATGACGCTTGTTCTGAATT 59.185 39.130 20.54 0.00 0.00 2.17
4467 14661 6.403049 GGTTCAACCTCCTTTTTGAAAGAAA 58.597 36.000 0.00 0.00 42.02 2.52
4578 14823 3.257375 AGTTGTAGGTGCGATGACACTTA 59.743 43.478 0.00 0.00 40.52 2.24
4589 14834 4.157840 CCCCATCTTAAAAGTTGTAGGTGC 59.842 45.833 1.32 0.00 0.00 5.01
4600 14845 3.335183 TCATGACCACCCCCATCTTAAAA 59.665 43.478 0.00 0.00 0.00 1.52
4870 15128 1.151777 CTCGACGGCATGGCGTAATT 61.152 55.000 41.96 23.77 0.00 1.40
4955 15213 1.206132 GGGGGCATCGGTTTTTAAAGG 59.794 52.381 0.00 0.00 0.00 3.11
5083 15362 1.363744 GCATCGTTGCTACAGCTCTT 58.636 50.000 11.21 0.00 45.77 2.85
5430 15776 1.963338 GCAGCAGCTCCAGAAACGT 60.963 57.895 0.00 0.00 37.91 3.99
5539 15885 1.617947 ATCCTCCTCCTGCGGTTGTC 61.618 60.000 0.00 0.00 0.00 3.18
5675 16021 4.124943 TCCCCTCTCCCCTCGTCG 62.125 72.222 0.00 0.00 0.00 5.12
5745 16096 1.972223 CCTCACGTCACCTCCTCGT 60.972 63.158 0.00 0.00 38.34 4.18
5746 16097 2.701780 CCCTCACGTCACCTCCTCG 61.702 68.421 0.00 0.00 0.00 4.63
5847 16201 3.922240 CACTTGTGCAAATATGGCTGTTC 59.078 43.478 0.00 0.00 0.00 3.18
6108 16560 1.871408 GCTGTGTGTGTGTGAGGAGAG 60.871 57.143 0.00 0.00 0.00 3.20
6110 16562 0.179076 TGCTGTGTGTGTGTGAGGAG 60.179 55.000 0.00 0.00 0.00 3.69
6113 16565 2.789208 CTTTTGCTGTGTGTGTGTGAG 58.211 47.619 0.00 0.00 0.00 3.51
6114 16566 1.135431 GCTTTTGCTGTGTGTGTGTGA 60.135 47.619 0.00 0.00 43.35 3.58
6416 16968 6.780031 TGTTTCATTCCCAGTTTTCTTCCATA 59.220 34.615 0.00 0.00 0.00 2.74
6514 17066 9.822727 ATGTATCATATCCCATATATACGGTCA 57.177 33.333 0.00 0.00 0.00 4.02
6747 17547 0.819259 TGCAGTTGGAGTGGCTCAAC 60.819 55.000 0.00 0.00 31.08 3.18
6785 17585 2.288666 AGTGCACACGACATCTGTTTT 58.711 42.857 21.04 0.00 36.20 2.43
6820 17620 6.500684 TGAAAGCAATGTAAGAATCTGTCC 57.499 37.500 0.00 0.00 0.00 4.02
6839 17639 8.392879 AGGGGACTCGTATTTTCAATGTTGAAA 61.393 37.037 14.95 14.95 45.91 2.69
6860 17660 3.388024 GCTGTGTGAAGTATGATAGGGGA 59.612 47.826 0.00 0.00 0.00 4.81
6866 17666 1.066215 TGCGGCTGTGTGAAGTATGAT 60.066 47.619 0.00 0.00 0.00 2.45
6874 17674 1.597854 CCTTTCTGCGGCTGTGTGA 60.598 57.895 0.00 0.00 0.00 3.58
6893 17693 1.522806 GGATCGTGGCGGCACAATA 60.523 57.895 36.79 23.71 0.00 1.90
6897 17697 3.576356 CATGGATCGTGGCGGCAC 61.576 66.667 30.53 30.53 0.00 5.01
6917 17717 5.362556 ACTGCATTGTTATCTCAACACAC 57.637 39.130 0.00 0.00 0.00 3.82
6918 17718 5.761003 CAACTGCATTGTTATCTCAACACA 58.239 37.500 0.00 0.00 33.20 3.72
6962 17762 0.794229 GTTCATTGGCACGACGCATG 60.794 55.000 0.00 0.00 45.17 4.06
6967 17767 4.419522 ACAATAAGTTCATTGGCACGAC 57.580 40.909 0.00 0.00 39.71 4.34
7003 17809 5.183713 TCCTCAACTACAAGGCAATCATTTG 59.816 40.000 0.00 0.00 35.85 2.32
7004 17810 5.324409 TCCTCAACTACAAGGCAATCATTT 58.676 37.500 0.00 0.00 32.37 2.32
7099 17905 2.355108 GCTTCCTGTGGCTCATAGACAA 60.355 50.000 1.44 0.00 33.17 3.18
7175 18011 5.711506 TGCACTGGACACAAATTGAATAGAT 59.288 36.000 0.00 0.00 0.00 1.98
7265 18116 3.131396 CGTTCAGTTCTGGTACAAAGCT 58.869 45.455 0.00 0.00 38.70 3.74
7275 18126 4.920927 ACAAAACCAAAACGTTCAGTTCTG 59.079 37.500 0.00 5.60 43.37 3.02
7286 18137 7.756558 TCCAATTTCATTCACAAAACCAAAAC 58.243 30.769 0.00 0.00 0.00 2.43
7393 18245 2.030274 GTGCAACCCAACCACTGATTAC 60.030 50.000 0.00 0.00 0.00 1.89
7462 18322 5.036737 GGTGAGACTTGTCAACAACAATTG 58.963 41.667 3.24 3.24 46.53 2.32
7465 18325 3.680490 TGGTGAGACTTGTCAACAACAA 58.320 40.909 13.08 0.00 41.29 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.