AutoCloner

Multiple sequence alignment - TraesCS7A01G538500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G538500	chr7A	100.000	3035	0	0	1	3035	715687852	715690886	0.000000e+00	5605
1	TraesCS7A01G538500	chr7A	80.928	194	18	14	2776	2956	30155122	30155309	5.280000e-28	135
2	TraesCS7A01G538500	chr7B	94.115	2209	87	21	1	2182	716702686	716704878	0.000000e+00	3319
3	TraesCS7A01G538500	chr7B	88.103	891	66	18	1674	2527	716974603	716973716	0.000000e+00	1022
4	TraesCS7A01G538500	chr7B	87.255	510	43	10	2364	2870	716704909	716705399	2.040000e-156	562
5	TraesCS7A01G538500	chr7B	81.106	217	31	8	2034	2245	727872096	727871885	6.730000e-37	165
6	TraesCS7A01G538500	chr7B	79.904	209	33	6	2034	2240	727920136	727919935	8.770000e-31	145
7	TraesCS7A01G538500	chr7B	79.602	201	28	11	2782	2971	27471680	27471878	6.830000e-27	132
8	TraesCS7A01G538500	chr7D	93.429	1735	76	20	1316	3035	619887091	619885380	0.000000e+00	2538
9	TraesCS7A01G538500	chr7D	80.000	220	31	9	2780	2990	76401056	76401271	1.880000e-32	150
10	TraesCS7A01G538500	chr2D	91.282	390	24	6	574	955	556347387	556347774	9.640000e-145	523
11	TraesCS7A01G538500	chr2D	83.807	457	68	5	1044	1498	13431425	13430973	2.160000e-116	429
12	TraesCS7A01G538500	chr2D	80.717	446	67	14	1061	1498	13426527	13426093	2.260000e-86	329
13	TraesCS7A01G538500	chr2D	79.167	216	35	7	2034	2247	622307546	622307339	1.130000e-29	141
14	TraesCS7A01G538500	chr4D	89.203	389	34	5	574	955	468904563	468904176	2.120000e-131	479
15	TraesCS7A01G538500	chr5D	89.003	391	32	6	574	955	410251873	410252261	9.850000e-130	473
16	TraesCS7A01G538500	chr5D	88.462	390	35	5	574	955	556999590	556999977	2.130000e-126	462
17	TraesCS7A01G538500	chr1A	89.239	381	33	4	583	955	33217075	33216695	1.270000e-128	470
18	TraesCS7A01G538500	chr1A	79.741	232	28	14	2780	2999	291981872	291982096	1.880000e-32	150
19	TraesCS7A01G538500	chr1A	79.091	220	32	7	2784	2992	579109663	579109447	4.080000e-29	139
20	TraesCS7A01G538500	chr2A	85.779	443	58	4	1057	1498	15409987	15409549	5.930000e-127	464
21	TraesCS7A01G538500	chr2A	81.429	420	66	8	1063	1476	15402167	15401754	1.740000e-87	333
22	TraesCS7A01G538500	chr3D	88.432	389	38	4	574	955	587940651	587941039	2.130000e-126	462
23	TraesCS7A01G538500	chr3D	82.540	189	26	6	2063	2247	610027159	610026974	3.130000e-35	159
24	TraesCS7A01G538500	chr6B	87.940	398	37	8	568	955	151201704	151201308	2.760000e-125	459
25	TraesCS7A01G538500	chr1D	88.542	384	37	4	579	955	18050150	18049767	2.760000e-125	459
26	TraesCS7A01G538500	chr1D	82.160	213	25	10	2034	2243	95790652	95790854	1.450000e-38	171
27	TraesCS7A01G538500	chr2B	81.560	423	60	11	1063	1476	24094000	24093587	1.740000e-87	333
28	TraesCS7A01G538500	chr2B	78.319	226	35	11	2767	2982	67645053	67645274	1.900000e-27	134
29	TraesCS7A01G538500	chrUn	77.188	320	55	14	2719	3024	51210753	51210438	1.450000e-38	171
30	TraesCS7A01G538500	chr3B	81.250	224	26	12	2782	2994	96817775	96817557	1.870000e-37	167
31	TraesCS7A01G538500	chr3A	83.240	179	22	6	2063	2239	743863861	743863689	1.130000e-34	158

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G538500	chr7A	715687852	715690886	3034	False	5605.0	5605	100.000	1	3035	1	chr7A.!!$F2	3034
1	TraesCS7A01G538500	chr7B	716702686	716705399	2713	False	1940.5	3319	90.685	1	2870	2	chr7B.!!$F2	2869
2	TraesCS7A01G538500	chr7B	716973716	716974603	887	True	1022.0	1022	88.103	1674	2527	1	chr7B.!!$R1	853
3	TraesCS7A01G538500	chr7D	619885380	619887091	1711	True	2538.0	2538	93.429	1316	3035	1	chr7D.!!$R1	1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
572	575	0.685097	TAATAGGCACTCGCATCCCC	59.315	55.0	0.0	0.0	41.75	4.81	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2264	2319	0.24636	TGTACAGGTGCACCAGATCG	59.754	55.0	36.39	20.59	38.89	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	53	3.317711	TGCCAATGAATAAGTATTGCCCG	59.682	43.478	0.00	0.00	33.92	6.13
84	86	5.773680	CCATTTCCCTCTCATTAGAATGCAT	59.226	40.000	0.00	0.00	36.36	3.96
126	128	4.201851	CGAGAAGCCATATCCACACTTTTG	60.202	45.833	0.00	0.00	0.00	2.44
180	182	6.741358	GCGTTCATACATTTGAGTCTTTAACC	59.259	38.462	0.00	0.00	0.00	2.85
304	307	2.029918	GGTGCAAAGTGGAACAATCTCC	60.030	50.000	0.00	0.00	44.16	3.71
315	318	6.649557	AGTGGAACAATCTCCTAACTTAAACG	59.350	38.462	0.00	0.00	44.16	3.60
359	362	6.203530	CAGCATGTGATAAAGATACGGTTCAT	59.796	38.462	0.00	0.00	0.00	2.57
362	365	7.385205	GCATGTGATAAAGATACGGTTCATACT	59.615	37.037	0.00	0.00	0.00	2.12
403	406	7.007697	CACAAAGTAAAGTCGTGTGTTATAGC	58.992	38.462	0.00	0.00	35.86	2.97
419	422	1.913778	TAGCCACCGACACTTCTACA	58.086	50.000	0.00	0.00	0.00	2.74
432	435	6.962116	CGACACTTCTACAGAGTAACATGTAG	59.038	42.308	0.00	6.10	46.70	2.74
451	454	1.153509	GCATGGCATTTGCTGTCCC	60.154	57.895	5.84	0.00	41.70	4.46
572	575	0.685097	TAATAGGCACTCGCATCCCC	59.315	55.000	0.00	0.00	41.75	4.81
576	579	2.435938	GCACTCGCATCCCCGAAA	60.436	61.111	0.00	0.00	36.72	3.46
727	730	6.844696	TGTGCGTAAATTTTTATGGCAAAA	57.155	29.167	0.00	0.00	36.99	2.44
731	734	8.652463	GTGCGTAAATTTTTATGGCAAAATACT	58.348	29.630	0.00	0.00	35.67	2.12
739	747	3.893326	ATGGCAAAATACTTTGAGGGC	57.107	42.857	0.00	0.00	44.03	5.19
798	810	9.800433	CACATGATACTATTCATCCTCATAGAC	57.200	37.037	0.00	0.00	34.09	2.59
848	860	8.757789	GGTCGTATTTCAACGTATTTCATCATA	58.242	33.333	0.00	0.00	43.31	2.15
874	886	9.615295	AAAATTTTACACACATATGGTTACGTC	57.385	29.630	7.80	0.00	0.00	4.34
886	898	4.095410	TGGTTACGTCCTTACATACACG	57.905	45.455	0.00	0.00	38.24	4.49
891	903	4.579454	ACGTCCTTACATACACGCATAT	57.421	40.909	0.00	0.00	35.64	1.78
1262	1290	2.949106	GTTCCTCGACGTCGTCCA	59.051	61.111	34.40	17.08	40.80	4.02
1275	1303	4.736896	GTCCAGTCCGTCCGGTGC	62.737	72.222	0.00	0.63	36.47	5.01
1278	1306	4.657824	CAGTCCGTCCGGTGCGTT	62.658	66.667	16.92	3.41	36.47	4.84
1618	1646	3.394836	GCAAGGAGGAGGGCTCGT	61.395	66.667	0.00	0.00	0.00	4.18
1737	1765	2.679716	GGCAGGAAGGTGCTGGAT	59.320	61.111	0.00	0.00	43.45	3.41
2042	2070	2.163412	GCCATCGTGCCTAATGTTTTGA	59.837	45.455	0.00	0.00	0.00	2.69
2043	2071	3.181487	GCCATCGTGCCTAATGTTTTGAT	60.181	43.478	0.00	0.00	0.00	2.57
2210	2262	6.500910	TCATGATGAAATTGTGCAAGCTATC	58.499	36.000	0.00	0.00	0.00	2.08
2213	2265	4.707030	TGAAATTGTGCAAGCTATCTGG	57.293	40.909	0.00	0.00	0.00	3.86
2264	2319	3.812609	TCAGACGTCTAGATCTGCATCTC	59.187	47.826	19.57	0.00	41.82	2.75
2277	2332	1.156645	GCATCTCGATCTGGTGCACC	61.157	60.000	29.67	29.67	35.93	5.01
2278	2333	0.463204	CATCTCGATCTGGTGCACCT	59.537	55.000	34.75	16.98	36.82	4.00
2281	2336	0.817654	CTCGATCTGGTGCACCTGTA	59.182	55.000	34.75	23.05	36.48	2.74
2300	2355	3.494254	AGTGGTGTGGCCCCGAAA	61.494	61.111	0.00	0.00	36.04	3.46
2308	2363	4.796495	GGCCCCGAAACGGCTCAT	62.796	66.667	4.57	0.00	46.86	2.90
2338	2395	2.515991	CCAAGCCGTGTGTGGTGT	60.516	61.111	0.00	0.00	0.00	4.16
2402	2466	1.858458	CTGTACGACATGCATAACGGG	59.142	52.381	22.17	4.82	0.00	5.28
2513	2577	3.074788	CCTGGGTAGGGCTATCTCC	57.925	63.158	0.00	0.00	40.63	3.71
2518	2582	1.187087	GGTAGGGCTATCTCCGATGG	58.813	60.000	0.00	0.00	0.00	3.51
2524	2588	1.122019	GCTATCTCCGATGGGGTGGT	61.122	60.000	0.00	0.00	37.00	4.16
2564	2628	0.603707	ACCGTCAGTGCTGGTTCATG	60.604	55.000	0.68	0.00	29.87	3.07
2565	2629	0.603707	CCGTCAGTGCTGGTTCATGT	60.604	55.000	0.00	0.00	0.00	3.21
2566	2630	1.337728	CCGTCAGTGCTGGTTCATGTA	60.338	52.381	0.00	0.00	0.00	2.29
2620	2684	6.769134	TTACGATGATCACTGAAAGGTCTA	57.231	37.500	0.00	0.00	39.30	2.59
2676	2741	7.122650	CAGAAGGCTTCTTTATGGATTTTGGTA	59.877	37.037	26.62	0.00	38.11	3.25
2681	2746	7.258441	GCTTCTTTATGGATTTTGGTAACTCC	58.742	38.462	0.00	0.00	34.54	3.85
2714	2779	3.636764	AGTTTGCCTTCGGAAGTGAATTT	59.363	39.130	16.07	0.00	0.00	1.82
2715	2780	3.641437	TTGCCTTCGGAAGTGAATTTG	57.359	42.857	16.07	0.86	0.00	2.32
2717	2782	2.813754	TGCCTTCGGAAGTGAATTTGAG	59.186	45.455	16.07	0.00	0.00	3.02
2723	2788	4.832248	TCGGAAGTGAATTTGAGCTATGT	58.168	39.130	0.00	0.00	0.00	2.29
2747	2812	2.358247	GCTTGACGCGGAGGGAAA	60.358	61.111	12.47	0.00	46.37	3.13
2752	2817	0.680618	TGACGCGGAGGGAAAAGTTA	59.319	50.000	12.47	0.00	46.37	2.24
2758	2823	3.288092	GCGGAGGGAAAAGTTATCCAAT	58.712	45.455	0.00	0.00	38.80	3.16
2795	2866	2.898840	CGCATGTAGCTGCTGGGG	60.899	66.667	13.43	3.95	42.61	4.96
2799	2870	1.990060	ATGTAGCTGCTGGGGTCGT	60.990	57.895	13.43	0.00	0.00	4.34
2801	2872	1.320344	TGTAGCTGCTGGGGTCGTAG	61.320	60.000	13.43	0.00	0.00	3.51
2859	2931	3.335579	GTGCTTCTCGATACCTGGTTTT	58.664	45.455	3.84	0.00	0.00	2.43
2870	2942	1.675641	CTGGTTTTGAGCTCCGGGG	60.676	63.158	12.15	0.00	0.00	5.73
2888	2960	3.118186	CGGGGTGAAAACCATAGGTATGA	60.118	47.826	0.00	0.00	33.12	2.15
2890	2962	3.875134	GGGTGAAAACCATAGGTATGACG	59.125	47.826	0.00	0.00	33.12	4.35
2918	2990	4.460263	TGGTTATATCTGGCAATGGTGAC	58.540	43.478	0.00	0.00	0.00	3.67
2925	2997	2.126467	CTGGCAATGGTGACGTTTTTG	58.874	47.619	0.00	0.00	37.50	2.44
2926	2998	0.858583	GGCAATGGTGACGTTTTTGC	59.141	50.000	11.14	11.14	41.40	3.68
2933	3013	3.806380	TGGTGACGTTTTTGCTACCTTA	58.194	40.909	0.00	0.00	0.00	2.69
2955	3035	2.497138	TGAAGGCATTGCTCGGATATG	58.503	47.619	8.82	0.00	0.00	1.78
2960	3040	2.225019	GGCATTGCTCGGATATGTTCAG	59.775	50.000	8.82	0.00	0.00	3.02
2982	3062	6.094048	TCAGACTTGTTCTTTTCAAGGTGAAG	59.906	38.462	9.82	0.00	44.29	3.02
2984	3064	6.830838	AGACTTGTTCTTTTCAAGGTGAAGAT	59.169	34.615	9.82	0.00	44.29	2.40
3019	3099	5.183140	ACCTTTTATGGTCGAATTTGGTGAG	59.817	40.000	0.00	0.00	34.86	3.51
3020	3100	5.393027	CCTTTTATGGTCGAATTTGGTGAGG	60.393	44.000	0.00	0.00	0.00	3.86
3031	3111	2.358737	GGTGAGGGTGGTGCTTCG	60.359	66.667	0.00	0.00	0.00	3.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	42	2.355412	GGTGGTAGTTCGGGCAATACTT	60.355	50.000	0.00	0.00	0.00	2.24
45	47	0.402504	AATGGTGGTAGTTCGGGCAA	59.597	50.000	0.00	0.00	0.00	4.52
47	49	1.092348	GAAATGGTGGTAGTTCGGGC	58.908	55.000	0.00	0.00	0.00	6.13
51	53	3.263425	TGAGAGGGAAATGGTGGTAGTTC	59.737	47.826	0.00	0.00	0.00	3.01
84	86	4.508492	TCTCGCATTTCACGACTTTTACAA	59.492	37.500	0.00	0.00	35.35	2.41
126	128	4.965119	ATTTGGCGTGATAAAAGGACTC	57.035	40.909	0.00	0.00	0.00	3.36
180	182	8.867112	AATACGTGTGTGTCCTATTTAGTATG	57.133	34.615	0.00	0.00	0.00	2.39
226	229	3.463048	AAGATGAAGCCCTTCCATTGT	57.537	42.857	5.64	0.00	38.77	2.71
304	307	7.672351	TTGTTTTCATGCACGTTTAAGTTAG	57.328	32.000	0.00	0.00	0.00	2.34
315	318	4.270566	TGCTGTCATTTTGTTTTCATGCAC	59.729	37.500	0.00	0.00	0.00	4.57
350	353	8.761689	AGGGACTAAATTTTAGTATGAACCGTA	58.238	33.333	19.21	0.00	36.02	4.02
403	406	1.887198	ACTCTGTAGAAGTGTCGGTGG	59.113	52.381	0.00	0.00	0.00	4.61
432	435	1.153509	GGACAGCAAATGCCATGCC	60.154	57.895	0.94	0.00	44.91	4.40
451	454	2.521996	CGTCATGATTGCACATTGTGG	58.478	47.619	18.05	0.22	33.64	4.17
572	575	2.546368	TCGGTCACCAAAGACATTTTCG	59.454	45.455	0.00	0.00	40.29	3.46
576	579	1.072331	AGCTCGGTCACCAAAGACATT	59.928	47.619	0.00	0.00	40.29	2.71
673	676	8.870116	TGTTATGCCTTCATGTATATCTGTACT	58.130	33.333	0.00	0.00	34.22	2.73
684	687	4.081406	ACATGTGTGTTATGCCTTCATGT	58.919	39.130	0.00	0.00	39.25	3.21
713	716	7.336679	GCCCTCAAAGTATTTTGCCATAAAAAT	59.663	33.333	5.86	1.08	42.71	1.82
720	723	2.562298	CAGCCCTCAAAGTATTTTGCCA	59.438	45.455	5.86	0.00	42.71	4.92
727	730	2.584835	TTGCACAGCCCTCAAAGTAT	57.415	45.000	0.00	0.00	0.00	2.12
819	831	4.852609	AATACGTTGAAATACGACCTGC	57.147	40.909	0.00	0.00	43.99	4.85
822	834	6.996106	TGATGAAATACGTTGAAATACGACC	58.004	36.000	0.00	0.00	43.99	4.79
848	860	9.615295	GACGTAACCATATGTGTGTAAAATTTT	57.385	29.630	8.75	8.75	31.34	1.82
929	941	8.389779	TGGAGGCCTTTATTTTTGAAAAATTC	57.610	30.769	19.57	9.97	0.00	2.17
940	952	3.313012	GCGTTTTGGAGGCCTTTATTT	57.687	42.857	6.77	0.00	33.08	1.40
1109	1137	1.077625	AGGAGGAGGAAGTGCTCGT	59.922	57.895	0.00	0.00	44.54	4.18
1262	1290	4.657824	CAACGCACCGGACGGACT	62.658	66.667	18.80	6.89	38.96	3.85
1275	1303	3.645975	GTGCCCGTGGTGACAACG	61.646	66.667	5.33	5.33	46.06	4.10
1618	1646	3.142838	GTAGGTGTAGCGGCGGGA	61.143	66.667	9.78	0.00	0.00	5.14
2210	2262	4.508461	TGAAGCATTGACAAATGTCCAG	57.492	40.909	10.83	2.56	44.34	3.86
2264	2319	0.246360	TGTACAGGTGCACCAGATCG	59.754	55.000	36.39	20.59	38.89	3.69
2277	2332	1.302511	GGGCCACACCACTGTACAG	60.303	63.158	21.44	21.44	42.05	2.74
2278	2333	2.824880	GGGGCCACACCACTGTACA	61.825	63.158	4.39	0.00	39.64	2.90
2300	2355	1.033746	CCAATCTGCCAATGAGCCGT	61.034	55.000	0.00	0.00	0.00	5.68
2338	2395	1.739929	CGCATACAGTTGCCACCGA	60.740	57.895	0.00	0.00	39.52	4.69
2417	2481	0.962356	CACAGACATCCACCAAGCCC	60.962	60.000	0.00	0.00	0.00	5.19
2508	2572	0.264955	ACTACCACCCCATCGGAGAT	59.735	55.000	0.00	0.00	45.12	2.75
2513	2577	2.288666	CAATTGACTACCACCCCATCG	58.711	52.381	0.00	0.00	0.00	3.84
2518	2582	2.159382	CACCACAATTGACTACCACCC	58.841	52.381	13.59	0.00	0.00	4.61
2524	2588	2.105649	TGGAGCACACCACAATTGACTA	59.894	45.455	13.59	0.00	34.77	2.59
2564	2628	5.015515	AGGGTGACACTTTAGTCCTACTAC	58.984	45.833	5.39	0.00	37.73	2.73
2565	2629	5.259632	GAGGGTGACACTTTAGTCCTACTA	58.740	45.833	5.39	0.00	37.73	1.82
2566	2630	4.087907	GAGGGTGACACTTTAGTCCTACT	58.912	47.826	5.39	0.00	37.73	2.57
2620	2684	3.033746	AGGGAGGAACCATCAGCAT	57.966	52.632	0.00	0.00	41.20	3.79
2676	2741	3.747708	GCAAACTAACTGGAGTGGGAGTT	60.748	47.826	0.00	0.00	36.40	3.01
2681	2746	2.568623	AGGCAAACTAACTGGAGTGG	57.431	50.000	0.00	0.00	0.00	4.00
2714	2779	2.693074	TCAAGCCATCGTACATAGCTCA	59.307	45.455	0.00	0.00	32.19	4.26
2715	2780	3.053455	GTCAAGCCATCGTACATAGCTC	58.947	50.000	0.00	0.00	32.19	4.09
2717	2782	1.787155	CGTCAAGCCATCGTACATAGC	59.213	52.381	0.00	0.00	0.00	2.97
2723	2788	2.202690	CCGCGTCAAGCCATCGTA	60.203	61.111	4.92	0.00	44.76	3.43
2752	2817	6.613699	TGGGCTAGAAATAACATCATTGGAT	58.386	36.000	0.00	0.00	0.00	3.41
2758	2823	3.466836	CGCTGGGCTAGAAATAACATCA	58.533	45.455	0.43	0.00	0.00	3.07
2795	2866	0.788391	CGCCACCACTTTTCTACGAC	59.212	55.000	0.00	0.00	0.00	4.34
2799	2870	2.215196	GTTGTCGCCACCACTTTTCTA	58.785	47.619	0.00	0.00	0.00	2.10
2801	2872	0.736053	TGTTGTCGCCACCACTTTTC	59.264	50.000	0.00	0.00	0.00	2.29
2824	2895	2.037772	AGAAGCACCACTCGAAGTCAAT	59.962	45.455	0.00	0.00	0.00	2.57
2859	2931	1.072505	GTTTTCACCCCGGAGCTCA	59.927	57.895	17.19	0.00	0.00	4.26
2870	2942	5.172934	TCACGTCATACCTATGGTTTTCAC	58.827	41.667	0.00	0.00	37.09	3.18
2888	2960	3.196901	TGCCAGATATAACCAACTCACGT	59.803	43.478	0.00	0.00	0.00	4.49
2890	2962	5.009010	CCATTGCCAGATATAACCAACTCAC	59.991	44.000	0.00	0.00	0.00	3.51
2904	2976	1.686355	AAAACGTCACCATTGCCAGA	58.314	45.000	0.00	0.00	0.00	3.86
2933	3013	2.062971	ATCCGAGCAATGCCTTCAAT	57.937	45.000	0.00	0.00	0.00	2.57
2984	3064	9.947433	TTCGACCATAAAAGGTAAAATTCTAGA	57.053	29.630	0.00	0.00	43.38	2.43
2994	3074	6.239396	TCACCAAATTCGACCATAAAAGGTA	58.761	36.000	0.00	0.00	43.38	3.08
2995	3075	5.074115	TCACCAAATTCGACCATAAAAGGT	58.926	37.500	0.00	0.00	46.82	3.50
3001	3081	2.574369	ACCCTCACCAAATTCGACCATA	59.426	45.455	0.00	0.00	0.00	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.