Multiple sequence alignment - TraesCS7A01G537900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G537900 chr7A 100.000 3324 0 0 1 3324 715223546 715226869 0.000000e+00 6139
1 TraesCS7A01G537900 chr7D 92.881 2360 114 27 530 2876 619895654 619893336 0.000000e+00 3378
2 TraesCS7A01G537900 chr7D 90.966 476 20 7 2870 3324 619892871 619892398 1.310000e-173 619
3 TraesCS7A01G537900 chr7D 95.238 252 12 0 1 252 259290049 259290300 1.860000e-107 399
4 TraesCS7A01G537900 chr7D 89.865 296 30 0 1526 1821 619999736 619999441 6.730000e-102 381
5 TraesCS7A01G537900 chr7B 92.563 1358 86 12 530 1876 716566373 716567726 0.000000e+00 1934
6 TraesCS7A01G537900 chr7B 87.400 1373 111 42 531 1876 716650091 716651428 0.000000e+00 1520
7 TraesCS7A01G537900 chr7B 88.167 693 57 10 2012 2703 716661980 716662648 0.000000e+00 802
8 TraesCS7A01G537900 chr7B 92.349 562 27 9 2005 2560 716651660 716652211 0.000000e+00 785
9 TraesCS7A01G537900 chr7B 92.171 562 28 9 2005 2560 716567958 716568509 0.000000e+00 780
10 TraesCS7A01G537900 chr7B 91.993 562 29 9 2005 2560 716581607 716582158 0.000000e+00 774
11 TraesCS7A01G537900 chr7B 90.074 272 18 8 246 508 618505924 618506195 8.830000e-91 344
12 TraesCS7A01G537900 chr7B 96.023 176 5 2 2698 2873 716678443 716678616 5.430000e-73 285
13 TraesCS7A01G537900 chr7B 88.066 243 22 7 1641 1876 716581133 716581375 7.020000e-72 281
14 TraesCS7A01G537900 chr4B 85.316 824 111 6 999 1813 70999388 70998566 0.000000e+00 843
15 TraesCS7A01G537900 chr4D 84.830 824 116 3 999 1813 48121583 48120760 0.000000e+00 821
16 TraesCS7A01G537900 chr4D 89.892 277 25 2 237 510 3381365 3381089 1.470000e-93 353
17 TraesCS7A01G537900 chrUn 91.993 562 29 9 2005 2560 370758565 370759116 0.000000e+00 774
18 TraesCS7A01G537900 chrUn 91.637 562 31 9 2005 2560 224998940 224998389 0.000000e+00 763
19 TraesCS7A01G537900 chrUn 88.211 246 22 7 1641 1879 224999414 224999169 1.510000e-73 287
20 TraesCS7A01G537900 chrUn 88.066 243 22 7 1641 1876 370758091 370758333 7.020000e-72 281
21 TraesCS7A01G537900 chr2B 96.032 252 10 0 1 252 43261342 43261091 8.580000e-111 411
22 TraesCS7A01G537900 chr2B 90.977 266 19 4 248 509 206286916 206287180 1.470000e-93 353
23 TraesCS7A01G537900 chr2B 90.494 263 23 1 249 509 166592378 166592116 2.450000e-91 346
24 TraesCS7A01G537900 chr3D 95.635 252 11 0 1 252 511247576 511247325 3.990000e-109 405
25 TraesCS7A01G537900 chr6D 95.618 251 11 0 1 251 462236485 462236235 1.440000e-108 403
26 TraesCS7A01G537900 chr6D 90.530 264 22 2 247 508 426200976 426200714 2.450000e-91 346
27 TraesCS7A01G537900 chr5B 95.238 252 12 0 1 252 371305412 371305663 1.860000e-107 399
28 TraesCS7A01G537900 chr1D 95.238 252 12 0 1 252 432742544 432742795 1.860000e-107 399
29 TraesCS7A01G537900 chr1D 95.238 252 12 0 1 252 485646470 485646219 1.860000e-107 399
30 TraesCS7A01G537900 chr1A 93.358 271 15 2 242 510 268242584 268242853 6.680000e-107 398
31 TraesCS7A01G537900 chr1A 90.602 266 21 4 247 510 498181637 498181374 1.900000e-92 350
32 TraesCS7A01G537900 chr5D 94.841 252 13 0 1 252 558333251 558333502 8.640000e-106 394
33 TraesCS7A01G537900 chr4A 94.208 259 14 1 250 508 114141030 114140773 8.640000e-106 394
34 TraesCS7A01G537900 chr1B 94.841 252 13 0 1 252 24295960 24295709 8.640000e-106 394
35 TraesCS7A01G537900 chr5A 90.637 267 19 4 248 509 34842169 34841904 1.900000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G537900 chr7A 715223546 715226869 3323 False 6139.0 6139 100.0000 1 3324 1 chr7A.!!$F1 3323
1 TraesCS7A01G537900 chr7D 619892398 619895654 3256 True 1998.5 3378 91.9235 530 3324 2 chr7D.!!$R2 2794
2 TraesCS7A01G537900 chr7B 716566373 716568509 2136 False 1357.0 1934 92.3670 530 2560 2 chr7B.!!$F4 2030
3 TraesCS7A01G537900 chr7B 716650091 716652211 2120 False 1152.5 1520 89.8745 531 2560 2 chr7B.!!$F6 2029
4 TraesCS7A01G537900 chr7B 716661980 716662648 668 False 802.0 802 88.1670 2012 2703 1 chr7B.!!$F2 691
5 TraesCS7A01G537900 chr7B 716581133 716582158 1025 False 527.5 774 90.0295 1641 2560 2 chr7B.!!$F5 919
6 TraesCS7A01G537900 chr4B 70998566 70999388 822 True 843.0 843 85.3160 999 1813 1 chr4B.!!$R1 814
7 TraesCS7A01G537900 chr4D 48120760 48121583 823 True 821.0 821 84.8300 999 1813 1 chr4D.!!$R2 814
8 TraesCS7A01G537900 chrUn 370758091 370759116 1025 False 527.5 774 90.0295 1641 2560 2 chrUn.!!$F1 919
9 TraesCS7A01G537900 chrUn 224998389 224999414 1025 True 525.0 763 89.9240 1641 2560 2 chrUn.!!$R1 919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.104120 TCATTCCCAGTACGCGATGG 59.896 55.0 15.93 17.64 36.27 3.51 F
57 58 0.179084 CATTCCCAGTACGCGATGGT 60.179 55.0 15.93 0.00 34.58 3.55 F
195 196 0.179124 GTTGTCTGGCTCCGCTCTAG 60.179 60.0 0.00 0.00 0.00 2.43 F
196 197 0.323451 TTGTCTGGCTCCGCTCTAGA 60.323 55.0 0.00 0.00 0.00 2.43 F
757 781 0.394899 AGATAAGCTGGGGCAACTGC 60.395 55.0 0.00 0.00 41.70 4.40 F
1770 1817 0.690762 ACTATGTTGCCGGTGACCTT 59.309 50.0 1.90 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1508 0.455464 TATGCACGTCCTCGAACACG 60.455 55.000 12.91 12.91 41.90 4.49 R
1770 1817 0.466555 CCTTTGGGACGGTGTGGAAA 60.467 55.000 0.00 0.00 33.58 3.13 R
1842 1889 3.118075 TGCCCTTTCCATCGATTCACATA 60.118 43.478 0.00 0.00 0.00 2.29 R
1970 2139 3.244215 CCTTGTTAGCCTCAGTTGAGTCA 60.244 47.826 8.23 0.00 40.48 3.41 R
2215 2384 2.159707 CCAGTCATTTTCGCTACGTTGG 60.160 50.000 0.00 0.00 0.00 3.77 R
3117 3792 1.066929 GCATTGGGCCGACAATCTTTT 60.067 47.619 4.40 0.00 38.94 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.728474 CAGGCCGTGCAGATGATC 58.272 61.111 0.00 0.00 0.00 2.92
20 21 1.153309 CAGGCCGTGCAGATGATCA 60.153 57.895 0.00 0.00 0.00 2.92
21 22 0.745486 CAGGCCGTGCAGATGATCAA 60.745 55.000 0.00 0.00 0.00 2.57
22 23 0.463295 AGGCCGTGCAGATGATCAAG 60.463 55.000 0.00 0.00 0.00 3.02
23 24 1.442526 GGCCGTGCAGATGATCAAGG 61.443 60.000 0.00 0.00 35.41 3.61
24 25 2.020131 CCGTGCAGATGATCAAGGC 58.980 57.895 0.00 4.51 0.00 4.35
25 26 0.745486 CCGTGCAGATGATCAAGGCA 60.745 55.000 13.32 13.32 0.00 4.75
26 27 1.089112 CGTGCAGATGATCAAGGCAA 58.911 50.000 17.43 3.77 36.08 4.52
27 28 1.469703 CGTGCAGATGATCAAGGCAAA 59.530 47.619 17.43 0.00 36.08 3.68
28 29 2.095110 CGTGCAGATGATCAAGGCAAAA 60.095 45.455 17.43 0.00 36.08 2.44
29 30 3.508762 GTGCAGATGATCAAGGCAAAAG 58.491 45.455 17.43 0.00 36.08 2.27
30 31 2.494471 TGCAGATGATCAAGGCAAAAGG 59.506 45.455 14.54 0.00 0.00 3.11
31 32 2.756760 GCAGATGATCAAGGCAAAAGGA 59.243 45.455 0.00 0.00 0.00 3.36
32 33 3.428589 GCAGATGATCAAGGCAAAAGGAC 60.429 47.826 0.00 0.00 0.00 3.85
33 34 3.129988 CAGATGATCAAGGCAAAAGGACC 59.870 47.826 0.00 0.00 0.00 4.46
34 35 1.533625 TGATCAAGGCAAAAGGACCG 58.466 50.000 0.00 0.00 0.00 4.79
35 36 0.811281 GATCAAGGCAAAAGGACCGG 59.189 55.000 0.00 0.00 0.00 5.28
36 37 0.404040 ATCAAGGCAAAAGGACCGGA 59.596 50.000 9.46 0.00 0.00 5.14
37 38 0.404040 TCAAGGCAAAAGGACCGGAT 59.596 50.000 9.46 0.00 0.00 4.18
38 39 0.811281 CAAGGCAAAAGGACCGGATC 59.189 55.000 9.46 1.18 0.00 3.36
39 40 0.404040 AAGGCAAAAGGACCGGATCA 59.596 50.000 9.46 0.00 0.00 2.92
40 41 0.625849 AGGCAAAAGGACCGGATCAT 59.374 50.000 9.46 0.00 0.00 2.45
41 42 1.005924 AGGCAAAAGGACCGGATCATT 59.994 47.619 9.46 2.91 30.96 2.57
42 43 1.405463 GGCAAAAGGACCGGATCATTC 59.595 52.381 9.46 0.00 28.97 2.67
43 44 1.405463 GCAAAAGGACCGGATCATTCC 59.595 52.381 9.46 3.61 38.81 3.01
44 45 2.024414 CAAAAGGACCGGATCATTCCC 58.976 52.381 9.46 0.00 39.01 3.97
45 46 1.295020 AAAGGACCGGATCATTCCCA 58.705 50.000 9.46 0.00 39.01 4.37
46 47 0.839946 AAGGACCGGATCATTCCCAG 59.160 55.000 9.46 0.00 39.01 4.45
47 48 0.326618 AGGACCGGATCATTCCCAGT 60.327 55.000 9.46 0.00 39.01 4.00
48 49 1.062428 AGGACCGGATCATTCCCAGTA 60.062 52.381 9.46 0.00 39.01 2.74
49 50 1.070289 GGACCGGATCATTCCCAGTAC 59.930 57.143 9.46 0.00 39.01 2.73
50 51 0.750850 ACCGGATCATTCCCAGTACG 59.249 55.000 9.46 0.00 39.01 3.67
51 52 0.600255 CCGGATCATTCCCAGTACGC 60.600 60.000 0.00 0.00 39.01 4.42
52 53 0.939577 CGGATCATTCCCAGTACGCG 60.940 60.000 3.53 3.53 39.01 6.01
53 54 0.387929 GGATCATTCCCAGTACGCGA 59.612 55.000 15.93 0.00 35.84 5.87
54 55 1.000955 GGATCATTCCCAGTACGCGAT 59.999 52.381 15.93 0.00 35.84 4.58
55 56 2.061773 GATCATTCCCAGTACGCGATG 58.938 52.381 15.93 8.55 0.00 3.84
56 57 0.104120 TCATTCCCAGTACGCGATGG 59.896 55.000 15.93 17.64 36.27 3.51
57 58 0.179084 CATTCCCAGTACGCGATGGT 60.179 55.000 15.93 0.00 34.58 3.55
58 59 0.179084 ATTCCCAGTACGCGATGGTG 60.179 55.000 15.93 11.68 34.58 4.17
59 60 2.202878 CCCAGTACGCGATGGTGG 60.203 66.667 15.93 13.69 34.58 4.61
60 61 2.577059 CCAGTACGCGATGGTGGT 59.423 61.111 15.93 0.00 0.00 4.16
61 62 1.518572 CCAGTACGCGATGGTGGTC 60.519 63.158 15.93 0.00 0.00 4.02
62 63 1.511305 CAGTACGCGATGGTGGTCT 59.489 57.895 15.93 0.00 0.00 3.85
63 64 0.525668 CAGTACGCGATGGTGGTCTC 60.526 60.000 15.93 0.00 0.00 3.36
64 65 0.963856 AGTACGCGATGGTGGTCTCA 60.964 55.000 15.93 0.00 0.00 3.27
65 66 0.525668 GTACGCGATGGTGGTCTCAG 60.526 60.000 15.93 0.00 0.00 3.35
66 67 0.678684 TACGCGATGGTGGTCTCAGA 60.679 55.000 15.93 0.00 0.00 3.27
67 68 1.215382 CGCGATGGTGGTCTCAGAA 59.785 57.895 0.00 0.00 0.00 3.02
68 69 0.803768 CGCGATGGTGGTCTCAGAAG 60.804 60.000 0.00 0.00 0.00 2.85
69 70 0.247736 GCGATGGTGGTCTCAGAAGT 59.752 55.000 0.00 0.00 0.00 3.01
70 71 1.476891 GCGATGGTGGTCTCAGAAGTA 59.523 52.381 0.00 0.00 0.00 2.24
71 72 2.094182 GCGATGGTGGTCTCAGAAGTAA 60.094 50.000 0.00 0.00 0.00 2.24
72 73 3.616560 GCGATGGTGGTCTCAGAAGTAAA 60.617 47.826 0.00 0.00 0.00 2.01
73 74 4.177026 CGATGGTGGTCTCAGAAGTAAAG 58.823 47.826 0.00 0.00 0.00 1.85
74 75 4.082190 CGATGGTGGTCTCAGAAGTAAAGA 60.082 45.833 0.00 0.00 0.00 2.52
75 76 4.873746 TGGTGGTCTCAGAAGTAAAGAG 57.126 45.455 0.00 0.00 0.00 2.85
76 77 4.223953 TGGTGGTCTCAGAAGTAAAGAGT 58.776 43.478 0.00 0.00 0.00 3.24
77 78 4.281182 TGGTGGTCTCAGAAGTAAAGAGTC 59.719 45.833 0.00 0.00 0.00 3.36
78 79 4.525100 GGTGGTCTCAGAAGTAAAGAGTCT 59.475 45.833 0.00 0.00 0.00 3.24
79 80 5.711036 GGTGGTCTCAGAAGTAAAGAGTCTA 59.289 44.000 0.00 0.00 0.00 2.59
80 81 6.208994 GGTGGTCTCAGAAGTAAAGAGTCTAA 59.791 42.308 0.00 0.00 0.00 2.10
81 82 7.093684 GGTGGTCTCAGAAGTAAAGAGTCTAAT 60.094 40.741 0.00 0.00 0.00 1.73
82 83 7.757624 GTGGTCTCAGAAGTAAAGAGTCTAATG 59.242 40.741 0.00 0.00 0.00 1.90
83 84 7.093727 TGGTCTCAGAAGTAAAGAGTCTAATGG 60.094 40.741 0.00 0.00 0.00 3.16
84 85 7.262048 GTCTCAGAAGTAAAGAGTCTAATGGG 58.738 42.308 0.00 0.00 0.00 4.00
85 86 6.954684 TCTCAGAAGTAAAGAGTCTAATGGGT 59.045 38.462 0.00 0.00 0.00 4.51
86 87 8.114102 TCTCAGAAGTAAAGAGTCTAATGGGTA 58.886 37.037 0.00 0.00 0.00 3.69
87 88 8.840200 TCAGAAGTAAAGAGTCTAATGGGTAT 57.160 34.615 0.00 0.00 0.00 2.73
88 89 9.931698 TCAGAAGTAAAGAGTCTAATGGGTATA 57.068 33.333 0.00 0.00 0.00 1.47
91 92 9.984190 GAAGTAAAGAGTCTAATGGGTATAAGG 57.016 37.037 0.00 0.00 0.00 2.69
92 93 8.493787 AGTAAAGAGTCTAATGGGTATAAGGG 57.506 38.462 0.00 0.00 0.00 3.95
93 94 8.294690 AGTAAAGAGTCTAATGGGTATAAGGGA 58.705 37.037 0.00 0.00 0.00 4.20
94 95 7.619512 AAAGAGTCTAATGGGTATAAGGGAG 57.380 40.000 0.00 0.00 0.00 4.30
95 96 6.296435 AGAGTCTAATGGGTATAAGGGAGT 57.704 41.667 0.00 0.00 0.00 3.85
96 97 6.078664 AGAGTCTAATGGGTATAAGGGAGTG 58.921 44.000 0.00 0.00 0.00 3.51
97 98 5.789535 AGTCTAATGGGTATAAGGGAGTGT 58.210 41.667 0.00 0.00 0.00 3.55
98 99 6.210522 AGTCTAATGGGTATAAGGGAGTGTT 58.789 40.000 0.00 0.00 0.00 3.32
99 100 6.099845 AGTCTAATGGGTATAAGGGAGTGTTG 59.900 42.308 0.00 0.00 0.00 3.33
100 101 5.968167 TCTAATGGGTATAAGGGAGTGTTGT 59.032 40.000 0.00 0.00 0.00 3.32
101 102 3.992943 TGGGTATAAGGGAGTGTTGTG 57.007 47.619 0.00 0.00 0.00 3.33
102 103 3.253220 TGGGTATAAGGGAGTGTTGTGT 58.747 45.455 0.00 0.00 0.00 3.72
103 104 3.653836 TGGGTATAAGGGAGTGTTGTGTT 59.346 43.478 0.00 0.00 0.00 3.32
104 105 4.845225 TGGGTATAAGGGAGTGTTGTGTTA 59.155 41.667 0.00 0.00 0.00 2.41
105 106 5.181009 GGGTATAAGGGAGTGTTGTGTTAC 58.819 45.833 0.00 0.00 0.00 2.50
106 107 5.046087 GGGTATAAGGGAGTGTTGTGTTACT 60.046 44.000 0.00 0.00 0.00 2.24
107 108 6.104665 GGTATAAGGGAGTGTTGTGTTACTC 58.895 44.000 0.00 0.00 41.95 2.59
108 109 5.818678 ATAAGGGAGTGTTGTGTTACTCA 57.181 39.130 0.00 0.00 43.91 3.41
109 110 3.470645 AGGGAGTGTTGTGTTACTCAC 57.529 47.619 0.00 0.00 45.48 3.51
122 123 6.879188 GTGTTACTCACATCTCTAAAGAGC 57.121 41.667 1.92 0.00 45.51 4.09
123 124 6.390721 GTGTTACTCACATCTCTAAAGAGCA 58.609 40.000 1.92 0.00 45.51 4.26
124 125 6.868864 GTGTTACTCACATCTCTAAAGAGCAA 59.131 38.462 1.92 0.00 45.51 3.91
125 126 7.385205 GTGTTACTCACATCTCTAAAGAGCAAA 59.615 37.037 1.92 0.00 45.51 3.68
126 127 7.931407 TGTTACTCACATCTCTAAAGAGCAAAA 59.069 33.333 1.92 0.00 41.80 2.44
127 128 8.940952 GTTACTCACATCTCTAAAGAGCAAAAT 58.059 33.333 1.92 0.00 41.80 1.82
130 131 9.678260 ACTCACATCTCTAAAGAGCAAAATAAT 57.322 29.630 1.92 0.00 41.80 1.28
131 132 9.932699 CTCACATCTCTAAAGAGCAAAATAATG 57.067 33.333 1.92 2.37 41.80 1.90
132 133 9.453572 TCACATCTCTAAAGAGCAAAATAATGT 57.546 29.630 1.92 2.93 41.80 2.71
142 143 9.630098 AAAGAGCAAAATAATGTTAGTCATGTG 57.370 29.630 0.00 0.00 36.81 3.21
143 144 8.340618 AGAGCAAAATAATGTTAGTCATGTGT 57.659 30.769 0.00 0.00 36.81 3.72
144 145 8.796475 AGAGCAAAATAATGTTAGTCATGTGTT 58.204 29.630 0.00 0.00 36.81 3.32
147 148 8.798153 GCAAAATAATGTTAGTCATGTGTTAGC 58.202 33.333 0.00 0.00 36.81 3.09
148 149 9.838975 CAAAATAATGTTAGTCATGTGTTAGCA 57.161 29.630 0.00 0.00 36.81 3.49
151 152 9.840427 AATAATGTTAGTCATGTGTTAGCAAAC 57.160 29.630 0.00 0.00 36.81 2.93
152 153 7.510549 AATGTTAGTCATGTGTTAGCAAACT 57.489 32.000 0.00 0.00 36.81 2.66
153 154 6.935741 TGTTAGTCATGTGTTAGCAAACTT 57.064 33.333 0.00 0.00 36.51 2.66
154 155 6.954944 TGTTAGTCATGTGTTAGCAAACTTC 58.045 36.000 0.00 0.00 36.51 3.01
155 156 4.732285 AGTCATGTGTTAGCAAACTTCG 57.268 40.909 0.00 0.00 36.51 3.79
156 157 3.498397 AGTCATGTGTTAGCAAACTTCGG 59.502 43.478 0.00 0.00 36.51 4.30
157 158 3.250040 GTCATGTGTTAGCAAACTTCGGT 59.750 43.478 0.00 0.00 36.51 4.69
158 159 3.496884 TCATGTGTTAGCAAACTTCGGTC 59.503 43.478 0.00 0.00 36.51 4.79
159 160 1.862201 TGTGTTAGCAAACTTCGGTCG 59.138 47.619 0.00 0.00 36.51 4.79
160 161 2.129607 GTGTTAGCAAACTTCGGTCGA 58.870 47.619 0.00 0.00 36.51 4.20
161 162 2.540931 GTGTTAGCAAACTTCGGTCGAA 59.459 45.455 5.67 5.67 36.51 3.71
162 163 3.185797 GTGTTAGCAAACTTCGGTCGAAT 59.814 43.478 6.25 0.00 36.51 3.34
163 164 3.185594 TGTTAGCAAACTTCGGTCGAATG 59.814 43.478 6.25 3.90 36.51 2.67
164 165 1.156736 AGCAAACTTCGGTCGAATGG 58.843 50.000 6.25 0.00 33.28 3.16
165 166 1.153353 GCAAACTTCGGTCGAATGGA 58.847 50.000 6.25 0.00 33.28 3.41
166 167 1.136057 GCAAACTTCGGTCGAATGGAC 60.136 52.381 6.25 0.00 45.31 4.02
175 176 2.358939 GTCGAATGGACAACCGTACT 57.641 50.000 0.00 0.00 45.36 2.73
176 177 1.990563 GTCGAATGGACAACCGTACTG 59.009 52.381 0.00 0.00 45.36 2.74
177 178 1.614903 TCGAATGGACAACCGTACTGT 59.385 47.619 0.00 0.00 39.42 3.55
178 179 2.036217 TCGAATGGACAACCGTACTGTT 59.964 45.455 0.00 0.00 39.42 3.16
185 186 0.865769 CAACCGTACTGTTGTCTGGC 59.134 55.000 18.83 0.00 40.54 4.85
186 187 0.756903 AACCGTACTGTTGTCTGGCT 59.243 50.000 1.47 0.00 0.00 4.75
187 188 0.317479 ACCGTACTGTTGTCTGGCTC 59.683 55.000 0.00 0.00 0.00 4.70
188 189 0.389948 CCGTACTGTTGTCTGGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
189 190 0.732880 CGTACTGTTGTCTGGCTCCG 60.733 60.000 0.00 0.00 0.00 4.63
190 191 1.014564 GTACTGTTGTCTGGCTCCGC 61.015 60.000 0.00 0.00 0.00 5.54
191 192 1.185618 TACTGTTGTCTGGCTCCGCT 61.186 55.000 0.00 0.00 0.00 5.52
192 193 1.739562 CTGTTGTCTGGCTCCGCTC 60.740 63.158 0.00 0.00 0.00 5.03
193 194 2.164865 CTGTTGTCTGGCTCCGCTCT 62.165 60.000 0.00 0.00 0.00 4.09
194 195 0.898326 TGTTGTCTGGCTCCGCTCTA 60.898 55.000 0.00 0.00 0.00 2.43
195 196 0.179124 GTTGTCTGGCTCCGCTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
196 197 0.323451 TTGTCTGGCTCCGCTCTAGA 60.323 55.000 0.00 0.00 0.00 2.43
197 198 1.032657 TGTCTGGCTCCGCTCTAGAC 61.033 60.000 0.00 0.00 35.93 2.59
198 199 1.454111 TCTGGCTCCGCTCTAGACC 60.454 63.158 0.00 0.00 0.00 3.85
199 200 1.454847 CTGGCTCCGCTCTAGACCT 60.455 63.158 0.00 0.00 0.00 3.85
200 201 1.733402 CTGGCTCCGCTCTAGACCTG 61.733 65.000 0.00 0.00 0.00 4.00
201 202 2.415426 GCTCCGCTCTAGACCTGC 59.585 66.667 0.00 0.00 0.00 4.85
202 203 2.124693 GCTCCGCTCTAGACCTGCT 61.125 63.158 0.00 0.00 0.00 4.24
203 204 0.820074 GCTCCGCTCTAGACCTGCTA 60.820 60.000 0.00 0.00 0.00 3.49
204 205 1.681538 CTCCGCTCTAGACCTGCTAA 58.318 55.000 0.00 0.00 0.00 3.09
205 206 2.235016 CTCCGCTCTAGACCTGCTAAT 58.765 52.381 0.00 0.00 0.00 1.73
206 207 1.957177 TCCGCTCTAGACCTGCTAATG 59.043 52.381 0.00 0.00 0.00 1.90
207 208 1.683917 CCGCTCTAGACCTGCTAATGT 59.316 52.381 0.00 0.00 0.00 2.71
208 209 2.287909 CCGCTCTAGACCTGCTAATGTC 60.288 54.545 0.00 0.00 0.00 3.06
209 210 2.287909 CGCTCTAGACCTGCTAATGTCC 60.288 54.545 0.00 0.00 31.76 4.02
210 211 2.695666 GCTCTAGACCTGCTAATGTCCA 59.304 50.000 0.00 0.00 31.76 4.02
211 212 3.323403 GCTCTAGACCTGCTAATGTCCAT 59.677 47.826 0.00 0.00 31.76 3.41
212 213 4.524714 GCTCTAGACCTGCTAATGTCCATA 59.475 45.833 0.00 0.00 31.76 2.74
213 214 5.336372 GCTCTAGACCTGCTAATGTCCATAG 60.336 48.000 0.00 0.00 31.76 2.23
214 215 5.706447 TCTAGACCTGCTAATGTCCATAGT 58.294 41.667 0.00 0.00 31.76 2.12
215 216 4.946478 AGACCTGCTAATGTCCATAGTC 57.054 45.455 0.00 0.00 31.76 2.59
216 217 4.551671 AGACCTGCTAATGTCCATAGTCT 58.448 43.478 0.00 0.00 31.76 3.24
217 218 4.343526 AGACCTGCTAATGTCCATAGTCTG 59.656 45.833 0.00 0.00 31.21 3.51
218 219 4.033709 ACCTGCTAATGTCCATAGTCTGT 58.966 43.478 0.00 0.00 0.00 3.41
219 220 4.141846 ACCTGCTAATGTCCATAGTCTGTG 60.142 45.833 0.00 0.00 0.00 3.66
220 221 4.141846 CCTGCTAATGTCCATAGTCTGTGT 60.142 45.833 0.00 0.00 0.00 3.72
221 222 5.069119 CCTGCTAATGTCCATAGTCTGTGTA 59.931 44.000 0.00 0.00 0.00 2.90
222 223 6.149129 TGCTAATGTCCATAGTCTGTGTAG 57.851 41.667 0.00 0.00 0.00 2.74
223 224 5.069119 TGCTAATGTCCATAGTCTGTGTAGG 59.931 44.000 0.00 0.00 0.00 3.18
224 225 5.509840 GCTAATGTCCATAGTCTGTGTAGGG 60.510 48.000 0.00 0.00 0.00 3.53
225 226 3.750501 TGTCCATAGTCTGTGTAGGGA 57.249 47.619 0.00 0.00 0.00 4.20
226 227 4.265856 TGTCCATAGTCTGTGTAGGGAT 57.734 45.455 0.00 0.00 33.15 3.85
227 228 3.960755 TGTCCATAGTCTGTGTAGGGATG 59.039 47.826 0.00 0.00 33.15 3.51
228 229 4.215908 GTCCATAGTCTGTGTAGGGATGA 58.784 47.826 0.00 0.00 33.15 2.92
229 230 4.649674 GTCCATAGTCTGTGTAGGGATGAA 59.350 45.833 0.00 0.00 33.15 2.57
230 231 5.305644 GTCCATAGTCTGTGTAGGGATGAAT 59.694 44.000 0.00 0.00 33.15 2.57
231 232 5.905331 TCCATAGTCTGTGTAGGGATGAATT 59.095 40.000 0.00 0.00 0.00 2.17
232 233 6.042093 TCCATAGTCTGTGTAGGGATGAATTC 59.958 42.308 0.00 0.00 0.00 2.17
233 234 4.392921 AGTCTGTGTAGGGATGAATTCG 57.607 45.455 0.04 0.00 0.00 3.34
234 235 3.769844 AGTCTGTGTAGGGATGAATTCGT 59.230 43.478 0.00 0.00 0.00 3.85
235 236 3.865745 GTCTGTGTAGGGATGAATTCGTG 59.134 47.826 4.51 0.00 0.00 4.35
236 237 3.513912 TCTGTGTAGGGATGAATTCGTGT 59.486 43.478 4.51 0.00 0.00 4.49
237 238 3.595173 TGTGTAGGGATGAATTCGTGTG 58.405 45.455 4.51 0.00 0.00 3.82
238 239 2.351726 GTGTAGGGATGAATTCGTGTGC 59.648 50.000 4.51 0.00 0.00 4.57
239 240 2.236146 TGTAGGGATGAATTCGTGTGCT 59.764 45.455 4.51 0.00 0.00 4.40
240 241 2.029838 AGGGATGAATTCGTGTGCTC 57.970 50.000 4.51 0.00 0.00 4.26
241 242 1.556911 AGGGATGAATTCGTGTGCTCT 59.443 47.619 4.51 0.00 0.00 4.09
242 243 2.026822 AGGGATGAATTCGTGTGCTCTT 60.027 45.455 4.51 0.00 0.00 2.85
243 244 2.096496 GGGATGAATTCGTGTGCTCTTG 59.904 50.000 4.51 0.00 0.00 3.02
244 245 3.002791 GGATGAATTCGTGTGCTCTTGA 58.997 45.455 4.51 0.00 0.00 3.02
245 246 3.063180 GGATGAATTCGTGTGCTCTTGAG 59.937 47.826 4.51 0.00 0.00 3.02
246 247 3.111853 TGAATTCGTGTGCTCTTGAGT 57.888 42.857 0.04 0.00 0.00 3.41
247 248 4.251543 TGAATTCGTGTGCTCTTGAGTA 57.748 40.909 0.04 0.00 0.00 2.59
248 249 4.627058 TGAATTCGTGTGCTCTTGAGTAA 58.373 39.130 0.04 0.00 0.00 2.24
249 250 5.237815 TGAATTCGTGTGCTCTTGAGTAAT 58.762 37.500 0.04 0.00 0.00 1.89
250 251 6.394809 TGAATTCGTGTGCTCTTGAGTAATA 58.605 36.000 0.04 0.00 0.00 0.98
251 252 6.310467 TGAATTCGTGTGCTCTTGAGTAATAC 59.690 38.462 0.04 0.00 0.00 1.89
252 253 5.386958 TTCGTGTGCTCTTGAGTAATACT 57.613 39.130 0.00 0.00 0.00 2.12
253 254 4.982999 TCGTGTGCTCTTGAGTAATACTC 58.017 43.478 13.20 13.20 45.26 2.59
254 255 4.106197 CGTGTGCTCTTGAGTAATACTCC 58.894 47.826 16.89 2.78 44.44 3.85
255 256 4.434520 GTGTGCTCTTGAGTAATACTCCC 58.565 47.826 16.89 2.52 44.44 4.30
256 257 4.160626 GTGTGCTCTTGAGTAATACTCCCT 59.839 45.833 16.89 0.00 44.44 4.20
257 258 4.777896 TGTGCTCTTGAGTAATACTCCCTT 59.222 41.667 16.89 0.00 44.44 3.95
258 259 5.105310 TGTGCTCTTGAGTAATACTCCCTTC 60.105 44.000 16.89 4.42 44.44 3.46
259 260 4.098044 TGCTCTTGAGTAATACTCCCTTCG 59.902 45.833 16.89 4.25 44.44 3.79
260 261 4.098196 GCTCTTGAGTAATACTCCCTTCGT 59.902 45.833 16.89 0.00 44.44 3.85
261 262 5.394333 GCTCTTGAGTAATACTCCCTTCGTT 60.394 44.000 16.89 0.00 44.44 3.85
262 263 6.600882 TCTTGAGTAATACTCCCTTCGTTT 57.399 37.500 16.89 0.00 44.44 3.60
263 264 7.001099 TCTTGAGTAATACTCCCTTCGTTTT 57.999 36.000 16.89 0.00 44.44 2.43
264 265 7.447594 TCTTGAGTAATACTCCCTTCGTTTTT 58.552 34.615 16.89 0.00 44.44 1.94
293 294 9.142014 AGTCTGCATATAAGATCTAGTCAAAGT 57.858 33.333 0.00 0.00 0.00 2.66
294 295 9.405587 GTCTGCATATAAGATCTAGTCAAAGTC 57.594 37.037 0.00 0.00 0.00 3.01
295 296 9.136323 TCTGCATATAAGATCTAGTCAAAGTCA 57.864 33.333 0.00 0.00 0.00 3.41
296 297 9.755804 CTGCATATAAGATCTAGTCAAAGTCAA 57.244 33.333 0.00 0.00 0.00 3.18
319 320 9.495572 TCAAATTTTGTAAAGTTTGACCAAGTT 57.504 25.926 18.19 0.00 44.38 2.66
363 364 9.463902 ACATCTACGATACTAAAGCTATATGGT 57.536 33.333 0.00 0.00 0.00 3.55
393 394 9.853555 AAAATTAATTTCACGATGCATCTAACA 57.146 25.926 23.73 5.16 0.00 2.41
394 395 9.853555 AAATTAATTTCACGATGCATCTAACAA 57.146 25.926 23.73 11.93 0.00 2.83
395 396 8.841444 ATTAATTTCACGATGCATCTAACAAC 57.159 30.769 23.73 0.00 0.00 3.32
396 397 3.989705 TTCACGATGCATCTAACAACG 57.010 42.857 23.73 12.17 38.99 4.10
397 398 2.954316 TCACGATGCATCTAACAACGT 58.046 42.857 23.73 12.82 45.69 3.99
398 399 3.322369 TCACGATGCATCTAACAACGTT 58.678 40.909 23.73 0.00 42.81 3.99
399 400 3.122780 TCACGATGCATCTAACAACGTTG 59.877 43.478 26.20 26.20 42.81 4.10
400 401 3.122780 CACGATGCATCTAACAACGTTGA 59.877 43.478 33.66 12.63 42.81 3.18
401 402 3.932710 ACGATGCATCTAACAACGTTGAT 59.067 39.130 33.66 24.64 42.81 2.57
402 403 4.391830 ACGATGCATCTAACAACGTTGATT 59.608 37.500 33.66 23.62 42.81 2.57
403 404 5.106712 ACGATGCATCTAACAACGTTGATTT 60.107 36.000 33.66 20.44 42.81 2.17
404 405 5.449113 CGATGCATCTAACAACGTTGATTTC 59.551 40.000 33.66 15.19 0.00 2.17
405 406 5.681337 TGCATCTAACAACGTTGATTTCA 57.319 34.783 33.66 17.29 0.00 2.69
406 407 6.252967 TGCATCTAACAACGTTGATTTCAT 57.747 33.333 33.66 15.21 0.00 2.57
407 408 7.371126 TGCATCTAACAACGTTGATTTCATA 57.629 32.000 33.66 14.49 0.00 2.15
408 409 7.984391 TGCATCTAACAACGTTGATTTCATAT 58.016 30.769 33.66 14.07 0.00 1.78
409 410 8.458052 TGCATCTAACAACGTTGATTTCATATT 58.542 29.630 33.66 16.96 0.00 1.28
410 411 8.736742 GCATCTAACAACGTTGATTTCATATTG 58.263 33.333 33.66 17.75 0.00 1.90
411 412 9.773328 CATCTAACAACGTTGATTTCATATTGT 57.227 29.630 33.66 5.21 31.29 2.71
412 413 9.773328 ATCTAACAACGTTGATTTCATATTGTG 57.227 29.630 33.66 12.18 30.82 3.33
413 414 8.233868 TCTAACAACGTTGATTTCATATTGTGG 58.766 33.333 33.66 10.08 30.82 4.17
414 415 6.567687 ACAACGTTGATTTCATATTGTGGA 57.432 33.333 33.66 0.00 29.89 4.02
415 416 7.156876 ACAACGTTGATTTCATATTGTGGAT 57.843 32.000 33.66 2.72 29.89 3.41
416 417 7.250569 ACAACGTTGATTTCATATTGTGGATC 58.749 34.615 33.66 0.00 29.89 3.36
417 418 7.121168 ACAACGTTGATTTCATATTGTGGATCT 59.879 33.333 33.66 2.00 29.89 2.75
418 419 7.630242 ACGTTGATTTCATATTGTGGATCTT 57.370 32.000 0.00 0.00 0.00 2.40
419 420 7.475015 ACGTTGATTTCATATTGTGGATCTTG 58.525 34.615 0.00 0.00 0.00 3.02
420 421 7.336679 ACGTTGATTTCATATTGTGGATCTTGA 59.663 33.333 0.00 0.00 0.00 3.02
421 422 8.347771 CGTTGATTTCATATTGTGGATCTTGAT 58.652 33.333 0.00 0.00 0.00 2.57
453 454 9.616156 TTCATGTAAACCTAGTCAAAGTTAACA 57.384 29.630 8.61 0.00 0.00 2.41
454 455 9.616156 TCATGTAAACCTAGTCAAAGTTAACAA 57.384 29.630 8.61 0.00 0.00 2.83
457 458 9.398538 TGTAAACCTAGTCAAAGTTAACAATGT 57.601 29.630 8.61 0.00 0.00 2.71
460 461 9.581099 AAACCTAGTCAAAGTTAACAATGTTTG 57.419 29.630 3.17 9.65 0.00 2.93
461 462 8.514330 ACCTAGTCAAAGTTAACAATGTTTGA 57.486 30.769 13.70 13.70 36.74 2.69
469 470 8.474006 AAAGTTAACAATGTTTGACTTTGACC 57.526 30.769 25.40 0.00 41.33 4.02
470 471 7.164230 AGTTAACAATGTTTGACTTTGACCA 57.836 32.000 3.17 0.00 36.91 4.02
471 472 7.607250 AGTTAACAATGTTTGACTTTGACCAA 58.393 30.769 3.17 0.00 36.91 3.67
472 473 8.091449 AGTTAACAATGTTTGACTTTGACCAAA 58.909 29.630 3.17 0.00 36.91 3.28
473 474 8.878769 GTTAACAATGTTTGACTTTGACCAAAT 58.121 29.630 3.17 0.00 36.91 2.32
474 475 7.538303 AACAATGTTTGACTTTGACCAAATC 57.462 32.000 11.98 0.00 36.91 2.17
475 476 6.877236 ACAATGTTTGACTTTGACCAAATCT 58.123 32.000 11.98 0.00 36.91 2.40
476 477 7.330262 ACAATGTTTGACTTTGACCAAATCTT 58.670 30.769 11.98 0.00 36.91 2.40
477 478 8.474025 ACAATGTTTGACTTTGACCAAATCTTA 58.526 29.630 11.98 0.00 36.91 2.10
478 479 9.480053 CAATGTTTGACTTTGACCAAATCTTAT 57.520 29.630 0.00 0.00 35.88 1.73
482 483 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
483 484 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
484 485 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
485 486 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
486 487 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
487 488 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
488 489 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
489 490 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
490 491 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
491 492 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
504 505 8.650143 ATGCAGACTAAAAAGAAATAAAGGGA 57.350 30.769 0.00 0.00 0.00 4.20
505 506 8.110860 TGCAGACTAAAAAGAAATAAAGGGAG 57.889 34.615 0.00 0.00 0.00 4.30
506 507 7.724061 TGCAGACTAAAAAGAAATAAAGGGAGT 59.276 33.333 0.00 0.00 0.00 3.85
507 508 9.227777 GCAGACTAAAAAGAAATAAAGGGAGTA 57.772 33.333 0.00 0.00 0.00 2.59
521 522 8.803397 ATAAAGGGAGTACAATCTTTTACACC 57.197 34.615 10.90 0.00 32.53 4.16
522 523 4.828829 AGGGAGTACAATCTTTTACACCG 58.171 43.478 0.00 0.00 31.63 4.94
523 524 3.373130 GGGAGTACAATCTTTTACACCGC 59.627 47.826 0.00 0.00 31.63 5.68
524 525 3.998341 GGAGTACAATCTTTTACACCGCA 59.002 43.478 0.00 0.00 0.00 5.69
525 526 4.453136 GGAGTACAATCTTTTACACCGCAA 59.547 41.667 0.00 0.00 0.00 4.85
526 527 5.049267 GGAGTACAATCTTTTACACCGCAAA 60.049 40.000 0.00 0.00 0.00 3.68
527 528 6.380095 AGTACAATCTTTTACACCGCAAAA 57.620 33.333 0.00 0.00 0.00 2.44
528 529 6.797454 AGTACAATCTTTTACACCGCAAAAA 58.203 32.000 0.00 0.00 0.00 1.94
592 593 3.922171 TTTTTGTGGCAACCAAGGATT 57.078 38.095 0.00 0.00 34.18 3.01
682 697 5.516996 CGAGAGTGACGCCAAGTAATATTA 58.483 41.667 0.00 0.00 0.00 0.98
757 781 0.394899 AGATAAGCTGGGGCAACTGC 60.395 55.000 0.00 0.00 41.70 4.40
785 809 6.105397 ACAGTCTATTTAAACCAAGGTCGA 57.895 37.500 0.00 0.00 0.00 4.20
851 878 3.861276 CGAGGGTGACGCCATATTATA 57.139 47.619 7.48 0.00 39.65 0.98
853 880 4.174009 CGAGGGTGACGCCATATTATAAG 58.826 47.826 7.48 0.00 39.65 1.73
854 881 4.321750 CGAGGGTGACGCCATATTATAAGT 60.322 45.833 7.48 0.00 39.65 2.24
952 981 3.133003 ACGGACATGAGATTAGGTCAAGG 59.867 47.826 0.00 0.00 33.31 3.61
995 1024 1.741145 TGATCGATCCGAGACACGAAA 59.259 47.619 22.31 0.00 45.77 3.46
1110 1139 4.414956 ACCTCCATGGGGCTCCGA 62.415 66.667 13.02 0.00 41.11 4.55
1149 1178 3.361158 CCGACGGCCATGCACAAA 61.361 61.111 2.24 0.00 0.00 2.83
1506 1553 1.137825 CCTCTTCGACGAGAGCACC 59.862 63.158 19.69 0.00 41.46 5.01
1563 1610 1.201429 AAGGTCTGGAAGCCCACGAT 61.201 55.000 0.00 0.00 37.58 3.73
1596 1643 1.300971 GCACCATCATGCGTGAGTGT 61.301 55.000 22.32 15.56 37.87 3.55
1683 1730 2.863484 ATCACCAAGGCCCACCCA 60.863 61.111 0.00 0.00 36.11 4.51
1770 1817 0.690762 ACTATGTTGCCGGTGACCTT 59.309 50.000 1.90 0.00 0.00 3.50
1797 1844 4.299796 GTCCCAAAGGCCCAGGCA 62.300 66.667 11.50 0.00 44.11 4.75
1822 1869 2.937591 TGCTCAAGGTACGTACTTTCG 58.062 47.619 24.07 16.23 0.00 3.46
1842 1889 8.956426 ACTTTCGTTGTTCCATGAATGTATTAT 58.044 29.630 0.00 0.00 30.03 1.28
1885 1939 7.775561 AGGGCACATTAATTTTTCTCCTAGTAG 59.224 37.037 0.00 0.00 0.00 2.57
1886 1940 7.556635 GGGCACATTAATTTTTCTCCTAGTAGT 59.443 37.037 0.00 0.00 0.00 2.73
1887 1941 9.609346 GGCACATTAATTTTTCTCCTAGTAGTA 57.391 33.333 0.00 0.00 0.00 1.82
1936 2043 9.612620 CACTGAAGTCAAACCAAATAAATCTAC 57.387 33.333 0.00 0.00 0.00 2.59
1956 2063 9.844257 AATCTACTAATCTTGTACTACGGTAGT 57.156 33.333 23.06 23.06 42.68 2.73
1957 2064 8.654230 TCTACTAATCTTGTACTACGGTAGTG 57.346 38.462 26.79 12.79 39.81 2.74
1999 2168 4.030913 ACTGAGGCTAACAAGGCTACATA 58.969 43.478 1.01 0.00 45.06 2.29
2000 2169 4.656112 ACTGAGGCTAACAAGGCTACATAT 59.344 41.667 1.01 0.00 45.06 1.78
2001 2170 5.839063 ACTGAGGCTAACAAGGCTACATATA 59.161 40.000 1.01 0.00 45.06 0.86
2002 2171 6.498651 ACTGAGGCTAACAAGGCTACATATAT 59.501 38.462 1.01 0.00 45.06 0.86
2003 2172 7.674348 ACTGAGGCTAACAAGGCTACATATATA 59.326 37.037 1.01 0.00 45.06 0.86
2004 2173 8.609617 TGAGGCTAACAAGGCTACATATATAT 57.390 34.615 1.01 0.00 45.06 0.86
2206 2375 1.527034 TGCTCATGCTTGTCTTCACC 58.473 50.000 0.00 0.00 40.48 4.02
2215 2384 2.435059 GTCTTCACCAGAGGCCGC 60.435 66.667 0.00 0.00 29.34 6.53
2242 2411 0.447801 GCGAAAATGACTGGCGTGAT 59.552 50.000 0.00 0.00 0.00 3.06
2362 2531 2.450609 TCCAAAAGGCGTACTCTGTC 57.549 50.000 0.00 0.00 0.00 3.51
2363 2532 1.968493 TCCAAAAGGCGTACTCTGTCT 59.032 47.619 0.00 0.00 0.00 3.41
2364 2533 3.159472 TCCAAAAGGCGTACTCTGTCTA 58.841 45.455 0.00 0.00 0.00 2.59
2383 2552 2.729028 AAAGTACCCTTGCAGTGTGT 57.271 45.000 0.00 0.00 0.00 3.72
2624 2806 2.024176 TGCTTCCAAATACGAGAGCC 57.976 50.000 0.00 0.00 0.00 4.70
2666 2848 2.012673 GGCATGAGCTCTTCACGAAAT 58.987 47.619 16.19 0.00 38.99 2.17
2668 2850 2.031437 GCATGAGCTCTTCACGAAATCC 59.969 50.000 16.19 0.00 38.99 3.01
2711 2895 6.401047 AAATTATCAAGTGGGCATGAGATG 57.599 37.500 0.00 0.00 0.00 2.90
2717 2901 1.134580 AGTGGGCATGAGATGTCTTCG 60.135 52.381 0.00 0.00 34.67 3.79
2720 2904 1.539929 GGGCATGAGATGTCTTCGAGG 60.540 57.143 0.00 0.00 34.67 4.63
2726 2910 5.698832 CATGAGATGTCTTCGAGGTCTATC 58.301 45.833 0.00 0.00 0.00 2.08
2729 2913 5.830457 TGAGATGTCTTCGAGGTCTATCAAT 59.170 40.000 0.00 0.00 0.00 2.57
2804 2988 8.840833 TCTTAAAAACCTTTGAAGTTTGCTTT 57.159 26.923 0.00 0.00 37.50 3.51
2852 3036 9.300681 TCTGATGAAGAAAAATAAATGGAGTGT 57.699 29.630 0.00 0.00 29.54 3.55
2948 3619 8.047310 TCCTTTACATAAGTCCTCCAAGAAATC 58.953 37.037 0.00 0.00 0.00 2.17
2977 3648 0.960364 TTTCTTCTGCATCCACCGGC 60.960 55.000 0.00 0.00 0.00 6.13
2978 3649 2.046023 CTTCTGCATCCACCGGCA 60.046 61.111 0.00 0.00 38.52 5.69
3007 3678 1.647545 GAGCATAGCTTGTTGCCGCA 61.648 55.000 11.12 0.00 39.88 5.69
3014 3685 1.798735 CTTGTTGCCGCATCTGGAG 59.201 57.895 0.00 0.00 0.00 3.86
3102 3777 5.272397 GTTCATGTAGACTAGAAGGCGTAC 58.728 45.833 0.00 0.00 0.00 3.67
3109 3784 3.106672 GACTAGAAGGCGTACATGAACG 58.893 50.000 0.00 0.00 45.58 3.95
3124 3799 6.422776 ACATGAACGCGATAAGAAAAGATT 57.577 33.333 15.93 0.00 0.00 2.40
3209 3884 1.476085 TCTTTGTGGCTTTGTGGTGTG 59.524 47.619 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.745486 TTGATCATCTGCACGGCCTG 60.745 55.000 0.00 0.00 0.00 4.85
3 4 0.463295 CTTGATCATCTGCACGGCCT 60.463 55.000 0.00 0.00 0.00 5.19
4 5 1.442526 CCTTGATCATCTGCACGGCC 61.443 60.000 0.00 0.00 0.00 6.13
5 6 2.020131 CCTTGATCATCTGCACGGC 58.980 57.895 0.00 0.00 0.00 5.68
6 7 0.745486 TGCCTTGATCATCTGCACGG 60.745 55.000 9.48 0.00 0.00 4.94
7 8 1.089112 TTGCCTTGATCATCTGCACG 58.911 50.000 12.28 0.00 0.00 5.34
8 9 3.508762 CTTTTGCCTTGATCATCTGCAC 58.491 45.455 12.28 0.00 0.00 4.57
9 10 2.494471 CCTTTTGCCTTGATCATCTGCA 59.506 45.455 9.48 9.48 0.00 4.41
10 11 2.756760 TCCTTTTGCCTTGATCATCTGC 59.243 45.455 0.00 0.09 0.00 4.26
11 12 3.129988 GGTCCTTTTGCCTTGATCATCTG 59.870 47.826 0.00 0.00 0.00 2.90
12 13 3.359950 GGTCCTTTTGCCTTGATCATCT 58.640 45.455 0.00 0.00 0.00 2.90
13 14 2.098117 CGGTCCTTTTGCCTTGATCATC 59.902 50.000 0.00 0.00 0.00 2.92
14 15 2.094675 CGGTCCTTTTGCCTTGATCAT 58.905 47.619 0.00 0.00 0.00 2.45
15 16 1.533625 CGGTCCTTTTGCCTTGATCA 58.466 50.000 0.00 0.00 0.00 2.92
16 17 0.811281 CCGGTCCTTTTGCCTTGATC 59.189 55.000 0.00 0.00 0.00 2.92
17 18 0.404040 TCCGGTCCTTTTGCCTTGAT 59.596 50.000 0.00 0.00 0.00 2.57
18 19 0.404040 ATCCGGTCCTTTTGCCTTGA 59.596 50.000 0.00 0.00 0.00 3.02
19 20 0.811281 GATCCGGTCCTTTTGCCTTG 59.189 55.000 0.00 0.00 0.00 3.61
20 21 0.404040 TGATCCGGTCCTTTTGCCTT 59.596 50.000 0.00 0.00 0.00 4.35
21 22 0.625849 ATGATCCGGTCCTTTTGCCT 59.374 50.000 0.00 0.00 0.00 4.75
22 23 1.405463 GAATGATCCGGTCCTTTTGCC 59.595 52.381 0.00 0.00 0.00 4.52
23 24 1.405463 GGAATGATCCGGTCCTTTTGC 59.595 52.381 0.00 0.00 35.59 3.68
34 35 0.387929 TCGCGTACTGGGAATGATCC 59.612 55.000 5.77 0.00 45.77 3.36
35 36 2.061773 CATCGCGTACTGGGAATGATC 58.938 52.381 5.77 0.00 43.46 2.92
36 37 1.270305 CCATCGCGTACTGGGAATGAT 60.270 52.381 5.77 0.00 43.46 2.45
37 38 0.104120 CCATCGCGTACTGGGAATGA 59.896 55.000 5.77 0.00 43.46 2.57
38 39 0.179084 ACCATCGCGTACTGGGAATG 60.179 55.000 22.41 10.56 43.46 2.67
39 40 0.179084 CACCATCGCGTACTGGGAAT 60.179 55.000 22.41 5.78 43.46 3.01
40 41 1.216977 CACCATCGCGTACTGGGAA 59.783 57.895 22.41 0.00 43.46 3.97
41 42 2.717044 CCACCATCGCGTACTGGGA 61.717 63.158 22.41 5.58 44.46 4.37
42 43 2.202878 CCACCATCGCGTACTGGG 60.203 66.667 22.41 13.75 36.82 4.45
43 44 1.518572 GACCACCATCGCGTACTGG 60.519 63.158 18.81 18.81 38.55 4.00
44 45 0.525668 GAGACCACCATCGCGTACTG 60.526 60.000 5.77 2.34 0.00 2.74
45 46 0.963856 TGAGACCACCATCGCGTACT 60.964 55.000 5.77 0.00 0.00 2.73
46 47 0.525668 CTGAGACCACCATCGCGTAC 60.526 60.000 5.77 0.00 0.00 3.67
47 48 0.678684 TCTGAGACCACCATCGCGTA 60.679 55.000 5.77 0.00 0.00 4.42
48 49 1.532604 TTCTGAGACCACCATCGCGT 61.533 55.000 5.77 0.00 0.00 6.01
49 50 0.803768 CTTCTGAGACCACCATCGCG 60.804 60.000 0.00 0.00 0.00 5.87
50 51 0.247736 ACTTCTGAGACCACCATCGC 59.752 55.000 0.00 0.00 0.00 4.58
51 52 3.868757 TTACTTCTGAGACCACCATCG 57.131 47.619 0.00 0.00 0.00 3.84
52 53 5.046950 ACTCTTTACTTCTGAGACCACCATC 60.047 44.000 0.00 0.00 0.00 3.51
53 54 4.841246 ACTCTTTACTTCTGAGACCACCAT 59.159 41.667 0.00 0.00 0.00 3.55
54 55 4.223953 ACTCTTTACTTCTGAGACCACCA 58.776 43.478 0.00 0.00 0.00 4.17
55 56 4.525100 AGACTCTTTACTTCTGAGACCACC 59.475 45.833 0.00 0.00 0.00 4.61
56 57 5.715434 AGACTCTTTACTTCTGAGACCAC 57.285 43.478 0.00 0.00 0.00 4.16
57 58 7.093727 CCATTAGACTCTTTACTTCTGAGACCA 60.094 40.741 0.00 0.00 0.00 4.02
58 59 7.262048 CCATTAGACTCTTTACTTCTGAGACC 58.738 42.308 0.00 0.00 0.00 3.85
59 60 7.093684 ACCCATTAGACTCTTTACTTCTGAGAC 60.094 40.741 0.00 0.00 0.00 3.36
60 61 6.954684 ACCCATTAGACTCTTTACTTCTGAGA 59.045 38.462 0.00 0.00 0.00 3.27
61 62 7.176589 ACCCATTAGACTCTTTACTTCTGAG 57.823 40.000 0.00 0.00 0.00 3.35
62 63 8.840200 ATACCCATTAGACTCTTTACTTCTGA 57.160 34.615 0.00 0.00 0.00 3.27
65 66 9.984190 CCTTATACCCATTAGACTCTTTACTTC 57.016 37.037 0.00 0.00 0.00 3.01
66 67 8.935741 CCCTTATACCCATTAGACTCTTTACTT 58.064 37.037 0.00 0.00 0.00 2.24
67 68 8.294690 TCCCTTATACCCATTAGACTCTTTACT 58.705 37.037 0.00 0.00 0.00 2.24
68 69 8.488308 TCCCTTATACCCATTAGACTCTTTAC 57.512 38.462 0.00 0.00 0.00 2.01
69 70 8.294690 ACTCCCTTATACCCATTAGACTCTTTA 58.705 37.037 0.00 0.00 0.00 1.85
70 71 7.071321 CACTCCCTTATACCCATTAGACTCTTT 59.929 40.741 0.00 0.00 0.00 2.52
71 72 6.555360 CACTCCCTTATACCCATTAGACTCTT 59.445 42.308 0.00 0.00 0.00 2.85
72 73 6.078664 CACTCCCTTATACCCATTAGACTCT 58.921 44.000 0.00 0.00 0.00 3.24
73 74 5.839606 ACACTCCCTTATACCCATTAGACTC 59.160 44.000 0.00 0.00 0.00 3.36
74 75 5.789535 ACACTCCCTTATACCCATTAGACT 58.210 41.667 0.00 0.00 0.00 3.24
75 76 6.126854 ACAACACTCCCTTATACCCATTAGAC 60.127 42.308 0.00 0.00 0.00 2.59
76 77 5.968167 ACAACACTCCCTTATACCCATTAGA 59.032 40.000 0.00 0.00 0.00 2.10
77 78 6.055588 CACAACACTCCCTTATACCCATTAG 58.944 44.000 0.00 0.00 0.00 1.73
78 79 5.489637 ACACAACACTCCCTTATACCCATTA 59.510 40.000 0.00 0.00 0.00 1.90
79 80 4.291249 ACACAACACTCCCTTATACCCATT 59.709 41.667 0.00 0.00 0.00 3.16
80 81 3.850173 ACACAACACTCCCTTATACCCAT 59.150 43.478 0.00 0.00 0.00 4.00
81 82 3.253220 ACACAACACTCCCTTATACCCA 58.747 45.455 0.00 0.00 0.00 4.51
82 83 3.994931 ACACAACACTCCCTTATACCC 57.005 47.619 0.00 0.00 0.00 3.69
83 84 6.046290 AGTAACACAACACTCCCTTATACC 57.954 41.667 0.00 0.00 0.00 2.73
84 85 6.694447 TGAGTAACACAACACTCCCTTATAC 58.306 40.000 0.00 0.00 40.41 1.47
85 86 6.921486 TGAGTAACACAACACTCCCTTATA 57.079 37.500 0.00 0.00 40.41 0.98
86 87 5.818678 TGAGTAACACAACACTCCCTTAT 57.181 39.130 0.00 0.00 40.41 1.73
99 100 6.390721 TGCTCTTTAGAGATGTGAGTAACAC 58.609 40.000 10.87 0.00 45.44 3.32
100 101 6.590234 TGCTCTTTAGAGATGTGAGTAACA 57.410 37.500 10.87 0.00 44.74 2.41
101 102 7.891183 TTTGCTCTTTAGAGATGTGAGTAAC 57.109 36.000 10.87 0.00 44.74 2.50
104 105 9.678260 ATTATTTTGCTCTTTAGAGATGTGAGT 57.322 29.630 10.87 0.00 44.74 3.41
105 106 9.932699 CATTATTTTGCTCTTTAGAGATGTGAG 57.067 33.333 10.87 0.00 44.74 3.51
106 107 9.453572 ACATTATTTTGCTCTTTAGAGATGTGA 57.546 29.630 10.87 0.00 44.74 3.58
116 117 9.630098 CACATGACTAACATTATTTTGCTCTTT 57.370 29.630 0.00 0.00 37.07 2.52
117 118 8.796475 ACACATGACTAACATTATTTTGCTCTT 58.204 29.630 0.00 0.00 37.07 2.85
118 119 8.340618 ACACATGACTAACATTATTTTGCTCT 57.659 30.769 0.00 0.00 37.07 4.09
119 120 8.970691 AACACATGACTAACATTATTTTGCTC 57.029 30.769 0.00 0.00 37.07 4.26
121 122 8.798153 GCTAACACATGACTAACATTATTTTGC 58.202 33.333 0.00 0.00 37.07 3.68
122 123 9.838975 TGCTAACACATGACTAACATTATTTTG 57.161 29.630 0.00 0.00 37.07 2.44
125 126 9.840427 GTTTGCTAACACATGACTAACATTATT 57.160 29.630 6.14 0.00 34.19 1.40
126 127 9.231297 AGTTTGCTAACACATGACTAACATTAT 57.769 29.630 13.46 0.00 35.45 1.28
127 128 8.615878 AGTTTGCTAACACATGACTAACATTA 57.384 30.769 13.46 0.00 35.45 1.90
128 129 7.510549 AGTTTGCTAACACATGACTAACATT 57.489 32.000 13.46 0.00 35.45 2.71
129 130 7.510549 AAGTTTGCTAACACATGACTAACAT 57.489 32.000 13.46 0.00 36.87 2.71
130 131 6.292649 CGAAGTTTGCTAACACATGACTAACA 60.293 38.462 13.46 0.00 36.70 2.41
131 132 6.071463 CGAAGTTTGCTAACACATGACTAAC 58.929 40.000 13.46 0.00 36.70 2.34
132 133 5.178623 CCGAAGTTTGCTAACACATGACTAA 59.821 40.000 13.46 0.00 36.70 2.24
133 134 4.688879 CCGAAGTTTGCTAACACATGACTA 59.311 41.667 13.46 0.00 36.70 2.59
134 135 3.498397 CCGAAGTTTGCTAACACATGACT 59.502 43.478 13.46 0.00 36.70 3.41
135 136 3.250040 ACCGAAGTTTGCTAACACATGAC 59.750 43.478 13.46 0.00 36.70 3.06
136 137 3.472652 ACCGAAGTTTGCTAACACATGA 58.527 40.909 13.46 0.00 36.70 3.07
137 138 3.664276 CGACCGAAGTTTGCTAACACATG 60.664 47.826 13.46 0.00 36.70 3.21
138 139 2.478894 CGACCGAAGTTTGCTAACACAT 59.521 45.455 13.46 0.00 36.70 3.21
139 140 1.862201 CGACCGAAGTTTGCTAACACA 59.138 47.619 13.46 0.00 36.70 3.72
140 141 2.129607 TCGACCGAAGTTTGCTAACAC 58.870 47.619 13.46 6.08 36.70 3.32
141 142 2.512485 TCGACCGAAGTTTGCTAACA 57.488 45.000 13.46 0.00 36.70 2.41
142 143 3.424433 CCATTCGACCGAAGTTTGCTAAC 60.424 47.826 10.65 2.56 37.56 2.34
143 144 2.739913 CCATTCGACCGAAGTTTGCTAA 59.260 45.455 10.65 0.00 37.56 3.09
144 145 2.028839 TCCATTCGACCGAAGTTTGCTA 60.029 45.455 10.65 0.00 37.56 3.49
145 146 1.156736 CCATTCGACCGAAGTTTGCT 58.843 50.000 10.65 0.00 37.56 3.91
146 147 1.136057 GTCCATTCGACCGAAGTTTGC 60.136 52.381 10.65 0.00 37.56 3.68
147 148 2.139917 TGTCCATTCGACCGAAGTTTG 58.860 47.619 10.65 4.48 41.18 2.93
148 149 2.536761 TGTCCATTCGACCGAAGTTT 57.463 45.000 10.65 0.00 41.18 2.66
149 150 2.140717 GTTGTCCATTCGACCGAAGTT 58.859 47.619 10.65 0.00 41.18 2.66
150 151 1.607251 GGTTGTCCATTCGACCGAAGT 60.607 52.381 10.65 0.00 41.18 3.01
151 152 1.076332 GGTTGTCCATTCGACCGAAG 58.924 55.000 10.65 3.52 41.18 3.79
152 153 3.220447 GGTTGTCCATTCGACCGAA 57.780 52.632 7.33 7.33 41.18 4.30
155 156 1.067354 AGTACGGTTGTCCATTCGACC 60.067 52.381 0.00 0.00 41.18 4.79
156 157 1.990563 CAGTACGGTTGTCCATTCGAC 59.009 52.381 0.00 0.00 42.33 4.20
157 158 1.614903 ACAGTACGGTTGTCCATTCGA 59.385 47.619 0.00 0.00 0.00 3.71
158 159 2.074547 ACAGTACGGTTGTCCATTCG 57.925 50.000 0.00 0.00 0.00 3.34
159 160 3.806316 CAACAGTACGGTTGTCCATTC 57.194 47.619 25.14 0.00 42.43 2.67
167 168 0.756903 AGCCAGACAACAGTACGGTT 59.243 50.000 5.49 5.49 0.00 4.44
168 169 0.317479 GAGCCAGACAACAGTACGGT 59.683 55.000 0.00 0.00 0.00 4.83
169 170 0.389948 GGAGCCAGACAACAGTACGG 60.390 60.000 0.00 0.00 0.00 4.02
170 171 0.732880 CGGAGCCAGACAACAGTACG 60.733 60.000 0.00 0.00 0.00 3.67
171 172 3.123674 CGGAGCCAGACAACAGTAC 57.876 57.895 0.00 0.00 0.00 2.73
185 186 1.681538 TTAGCAGGTCTAGAGCGGAG 58.318 55.000 23.60 14.96 0.00 4.63
186 187 1.957177 CATTAGCAGGTCTAGAGCGGA 59.043 52.381 23.60 5.45 0.00 5.54
187 188 1.683917 ACATTAGCAGGTCTAGAGCGG 59.316 52.381 16.49 16.49 0.00 5.52
188 189 2.287909 GGACATTAGCAGGTCTAGAGCG 60.288 54.545 15.91 11.87 34.49 5.03
189 190 2.695666 TGGACATTAGCAGGTCTAGAGC 59.304 50.000 14.19 14.19 34.49 4.09
190 191 5.772672 ACTATGGACATTAGCAGGTCTAGAG 59.227 44.000 0.00 0.00 39.03 2.43
191 192 5.706447 ACTATGGACATTAGCAGGTCTAGA 58.294 41.667 0.00 0.00 34.49 2.43
192 193 5.772672 AGACTATGGACATTAGCAGGTCTAG 59.227 44.000 0.00 0.00 34.49 2.43
193 194 5.536538 CAGACTATGGACATTAGCAGGTCTA 59.463 44.000 0.00 0.00 34.49 2.59
194 195 4.343526 CAGACTATGGACATTAGCAGGTCT 59.656 45.833 0.00 0.00 34.49 3.85
195 196 4.100189 ACAGACTATGGACATTAGCAGGTC 59.900 45.833 0.00 0.00 0.00 3.85
196 197 4.033709 ACAGACTATGGACATTAGCAGGT 58.966 43.478 0.00 0.00 0.00 4.00
197 198 4.141846 ACACAGACTATGGACATTAGCAGG 60.142 45.833 0.00 0.00 0.00 4.85
198 199 5.016051 ACACAGACTATGGACATTAGCAG 57.984 43.478 0.00 0.00 0.00 4.24
199 200 5.069119 CCTACACAGACTATGGACATTAGCA 59.931 44.000 0.00 0.00 0.00 3.49
200 201 5.509840 CCCTACACAGACTATGGACATTAGC 60.510 48.000 0.00 0.00 0.00 3.09
201 202 5.833667 TCCCTACACAGACTATGGACATTAG 59.166 44.000 0.00 0.00 0.00 1.73
202 203 5.773091 TCCCTACACAGACTATGGACATTA 58.227 41.667 0.00 0.00 0.00 1.90
203 204 4.620723 TCCCTACACAGACTATGGACATT 58.379 43.478 0.00 0.00 0.00 2.71
204 205 4.265856 TCCCTACACAGACTATGGACAT 57.734 45.455 0.00 0.00 0.00 3.06
205 206 3.750501 TCCCTACACAGACTATGGACA 57.249 47.619 0.00 0.00 0.00 4.02
206 207 4.215908 TCATCCCTACACAGACTATGGAC 58.784 47.826 0.00 0.00 0.00 4.02
207 208 4.536295 TCATCCCTACACAGACTATGGA 57.464 45.455 0.00 0.00 0.00 3.41
208 209 5.815233 ATTCATCCCTACACAGACTATGG 57.185 43.478 0.00 0.00 0.00 2.74
209 210 5.923114 CGAATTCATCCCTACACAGACTATG 59.077 44.000 6.22 0.00 0.00 2.23
210 211 5.598830 ACGAATTCATCCCTACACAGACTAT 59.401 40.000 6.22 0.00 0.00 2.12
211 212 4.954202 ACGAATTCATCCCTACACAGACTA 59.046 41.667 6.22 0.00 0.00 2.59
212 213 3.769844 ACGAATTCATCCCTACACAGACT 59.230 43.478 6.22 0.00 0.00 3.24
213 214 3.865745 CACGAATTCATCCCTACACAGAC 59.134 47.826 6.22 0.00 0.00 3.51
214 215 3.513912 ACACGAATTCATCCCTACACAGA 59.486 43.478 6.22 0.00 0.00 3.41
215 216 3.618594 CACACGAATTCATCCCTACACAG 59.381 47.826 6.22 0.00 0.00 3.66
216 217 3.595173 CACACGAATTCATCCCTACACA 58.405 45.455 6.22 0.00 0.00 3.72
217 218 2.351726 GCACACGAATTCATCCCTACAC 59.648 50.000 6.22 0.00 0.00 2.90
218 219 2.236146 AGCACACGAATTCATCCCTACA 59.764 45.455 6.22 0.00 0.00 2.74
219 220 2.866762 GAGCACACGAATTCATCCCTAC 59.133 50.000 6.22 0.00 0.00 3.18
220 221 2.766263 AGAGCACACGAATTCATCCCTA 59.234 45.455 6.22 0.00 0.00 3.53
221 222 1.556911 AGAGCACACGAATTCATCCCT 59.443 47.619 6.22 0.00 0.00 4.20
222 223 2.029838 AGAGCACACGAATTCATCCC 57.970 50.000 6.22 0.00 0.00 3.85
223 224 3.002791 TCAAGAGCACACGAATTCATCC 58.997 45.455 6.22 0.00 0.00 3.51
224 225 3.681897 ACTCAAGAGCACACGAATTCATC 59.318 43.478 6.22 0.00 0.00 2.92
225 226 3.668447 ACTCAAGAGCACACGAATTCAT 58.332 40.909 6.22 0.00 0.00 2.57
226 227 3.111853 ACTCAAGAGCACACGAATTCA 57.888 42.857 6.22 0.00 0.00 2.57
227 228 5.786401 ATTACTCAAGAGCACACGAATTC 57.214 39.130 0.00 0.00 0.00 2.17
228 229 6.398918 AGTATTACTCAAGAGCACACGAATT 58.601 36.000 0.00 0.00 0.00 2.17
229 230 5.967088 AGTATTACTCAAGAGCACACGAAT 58.033 37.500 0.00 0.00 0.00 3.34
230 231 5.386958 AGTATTACTCAAGAGCACACGAA 57.613 39.130 0.00 0.00 0.00 3.85
231 232 4.142447 GGAGTATTACTCAAGAGCACACGA 60.142 45.833 22.10 0.00 46.79 4.35
232 233 4.106197 GGAGTATTACTCAAGAGCACACG 58.894 47.826 22.10 0.00 46.79 4.49
233 234 4.160626 AGGGAGTATTACTCAAGAGCACAC 59.839 45.833 22.10 4.75 46.79 3.82
234 235 4.353777 AGGGAGTATTACTCAAGAGCACA 58.646 43.478 22.10 0.00 46.79 4.57
235 236 5.346181 AAGGGAGTATTACTCAAGAGCAC 57.654 43.478 22.10 5.97 46.79 4.40
236 237 4.098044 CGAAGGGAGTATTACTCAAGAGCA 59.902 45.833 22.10 0.00 46.79 4.26
237 238 4.098196 ACGAAGGGAGTATTACTCAAGAGC 59.902 45.833 22.10 7.19 46.79 4.09
238 239 5.838531 ACGAAGGGAGTATTACTCAAGAG 57.161 43.478 22.10 12.67 46.79 2.85
239 240 6.600882 AAACGAAGGGAGTATTACTCAAGA 57.399 37.500 22.10 0.00 46.79 3.02
240 241 7.668525 AAAAACGAAGGGAGTATTACTCAAG 57.331 36.000 22.10 11.83 46.79 3.02
267 268 9.142014 ACTTTGACTAGATCTTATATGCAGACT 57.858 33.333 0.00 0.00 0.00 3.24
268 269 9.405587 GACTTTGACTAGATCTTATATGCAGAC 57.594 37.037 0.00 0.00 0.00 3.51
269 270 9.136323 TGACTTTGACTAGATCTTATATGCAGA 57.864 33.333 0.00 0.00 0.00 4.26
270 271 9.755804 TTGACTTTGACTAGATCTTATATGCAG 57.244 33.333 0.00 0.00 0.00 4.41
293 294 9.495572 AACTTGGTCAAACTTTACAAAATTTGA 57.504 25.926 13.19 7.11 38.42 2.69
337 338 9.463902 ACCATATAGCTTTAGTATCGTAGATGT 57.536 33.333 0.00 0.00 45.12 3.06
367 368 9.853555 TGTTAGATGCATCGTGAAATTAATTTT 57.146 25.926 20.67 0.98 0.00 1.82
368 369 9.853555 TTGTTAGATGCATCGTGAAATTAATTT 57.146 25.926 20.67 13.24 0.00 1.82
369 370 9.289303 GTTGTTAGATGCATCGTGAAATTAATT 57.711 29.630 20.67 0.00 0.00 1.40
370 371 7.639850 CGTTGTTAGATGCATCGTGAAATTAAT 59.360 33.333 20.67 2.15 0.00 1.40
371 372 6.958752 CGTTGTTAGATGCATCGTGAAATTAA 59.041 34.615 20.67 9.29 0.00 1.40
372 373 6.091577 ACGTTGTTAGATGCATCGTGAAATTA 59.908 34.615 20.67 3.35 39.71 1.40
373 374 5.106712 ACGTTGTTAGATGCATCGTGAAATT 60.107 36.000 20.67 4.37 39.71 1.82
374 375 4.391830 ACGTTGTTAGATGCATCGTGAAAT 59.608 37.500 20.67 5.11 39.71 2.17
375 376 3.743911 ACGTTGTTAGATGCATCGTGAAA 59.256 39.130 20.67 11.61 39.71 2.69
376 377 3.322369 ACGTTGTTAGATGCATCGTGAA 58.678 40.909 20.67 13.31 39.71 3.18
377 378 2.954316 ACGTTGTTAGATGCATCGTGA 58.046 42.857 20.67 7.90 39.71 4.35
378 379 3.122780 TCAACGTTGTTAGATGCATCGTG 59.877 43.478 26.47 9.14 40.62 4.35
379 380 3.322369 TCAACGTTGTTAGATGCATCGT 58.678 40.909 26.47 11.04 41.94 3.73
380 381 3.989705 TCAACGTTGTTAGATGCATCG 57.010 42.857 26.47 10.38 35.80 3.84
381 382 6.314018 TGAAATCAACGTTGTTAGATGCATC 58.686 36.000 26.47 19.37 0.00 3.91
382 383 6.252967 TGAAATCAACGTTGTTAGATGCAT 57.747 33.333 26.47 0.00 0.00 3.96
383 384 5.681337 TGAAATCAACGTTGTTAGATGCA 57.319 34.783 26.47 13.97 0.00 3.96
384 385 8.736742 CAATATGAAATCAACGTTGTTAGATGC 58.263 33.333 26.47 11.85 0.00 3.91
385 386 9.773328 ACAATATGAAATCAACGTTGTTAGATG 57.227 29.630 26.47 16.29 30.27 2.90
386 387 9.773328 CACAATATGAAATCAACGTTGTTAGAT 57.227 29.630 26.47 11.01 31.30 1.98
387 388 8.233868 CCACAATATGAAATCAACGTTGTTAGA 58.766 33.333 26.47 9.01 31.30 2.10
388 389 8.233868 TCCACAATATGAAATCAACGTTGTTAG 58.766 33.333 26.47 2.38 31.30 2.34
389 390 8.100508 TCCACAATATGAAATCAACGTTGTTA 57.899 30.769 26.47 10.16 31.30 2.41
390 391 6.976088 TCCACAATATGAAATCAACGTTGTT 58.024 32.000 26.47 16.71 31.30 2.83
391 392 6.567687 TCCACAATATGAAATCAACGTTGT 57.432 33.333 26.47 12.26 32.74 3.32
392 393 7.475015 AGATCCACAATATGAAATCAACGTTG 58.525 34.615 22.35 22.35 0.00 4.10
393 394 7.630242 AGATCCACAATATGAAATCAACGTT 57.370 32.000 0.00 0.00 0.00 3.99
394 395 7.336679 TCAAGATCCACAATATGAAATCAACGT 59.663 33.333 0.00 0.00 0.00 3.99
395 396 7.696755 TCAAGATCCACAATATGAAATCAACG 58.303 34.615 0.00 0.00 0.00 4.10
427 428 9.616156 TGTTAACTTTGACTAGGTTTACATGAA 57.384 29.630 7.22 0.00 30.95 2.57
428 429 9.616156 TTGTTAACTTTGACTAGGTTTACATGA 57.384 29.630 7.22 0.00 34.24 3.07
431 432 9.398538 ACATTGTTAACTTTGACTAGGTTTACA 57.601 29.630 7.22 0.97 33.00 2.41
434 435 9.581099 CAAACATTGTTAACTTTGACTAGGTTT 57.419 29.630 7.22 5.67 37.08 3.27
435 436 8.962679 TCAAACATTGTTAACTTTGACTAGGTT 58.037 29.630 13.70 0.00 30.84 3.50
436 437 8.403236 GTCAAACATTGTTAACTTTGACTAGGT 58.597 33.333 27.39 7.15 44.69 3.08
437 438 8.782533 GTCAAACATTGTTAACTTTGACTAGG 57.217 34.615 27.39 10.82 44.69 3.02
441 442 9.134734 TCAAAGTCAAACATTGTTAACTTTGAC 57.865 29.630 35.36 28.07 46.09 3.18
443 444 8.379902 GGTCAAAGTCAAACATTGTTAACTTTG 58.620 33.333 33.62 33.62 45.12 2.77
444 445 8.091449 TGGTCAAAGTCAAACATTGTTAACTTT 58.909 29.630 23.76 23.76 36.35 2.66
445 446 7.607250 TGGTCAAAGTCAAACATTGTTAACTT 58.393 30.769 17.83 17.83 29.78 2.66
446 447 7.164230 TGGTCAAAGTCAAACATTGTTAACT 57.836 32.000 7.22 7.02 29.78 2.24
447 448 7.820044 TTGGTCAAAGTCAAACATTGTTAAC 57.180 32.000 1.76 0.00 29.78 2.01
448 449 9.092876 GATTTGGTCAAAGTCAAACATTGTTAA 57.907 29.630 1.76 0.00 35.97 2.01
449 450 8.474025 AGATTTGGTCAAAGTCAAACATTGTTA 58.526 29.630 1.76 0.00 35.97 2.41
450 451 7.330262 AGATTTGGTCAAAGTCAAACATTGTT 58.670 30.769 0.00 0.00 35.97 2.83
451 452 6.877236 AGATTTGGTCAAAGTCAAACATTGT 58.123 32.000 2.55 0.00 35.97 2.71
452 453 7.775397 AAGATTTGGTCAAAGTCAAACATTG 57.225 32.000 2.55 0.00 35.97 2.82
456 457 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
457 458 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
458 459 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
459 460 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
460 461 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
461 462 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
462 463 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
463 464 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
464 465 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
465 466 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
478 479 9.747898 TCCCTTTATTTCTTTTTAGTCTGCATA 57.252 29.630 0.00 0.00 0.00 3.14
479 480 8.650143 TCCCTTTATTTCTTTTTAGTCTGCAT 57.350 30.769 0.00 0.00 0.00 3.96
480 481 7.724061 ACTCCCTTTATTTCTTTTTAGTCTGCA 59.276 33.333 0.00 0.00 0.00 4.41
481 482 8.112016 ACTCCCTTTATTTCTTTTTAGTCTGC 57.888 34.615 0.00 0.00 0.00 4.26
495 496 9.239551 GGTGTAAAAGATTGTACTCCCTTTATT 57.760 33.333 3.55 0.00 30.84 1.40
496 497 7.551617 CGGTGTAAAAGATTGTACTCCCTTTAT 59.448 37.037 7.94 0.00 32.59 1.40
497 498 6.875195 CGGTGTAAAAGATTGTACTCCCTTTA 59.125 38.462 7.94 0.00 32.59 1.85
498 499 5.704053 CGGTGTAAAAGATTGTACTCCCTTT 59.296 40.000 7.94 0.00 32.59 3.11
499 500 5.243207 CGGTGTAAAAGATTGTACTCCCTT 58.757 41.667 7.94 0.00 32.59 3.95
500 501 4.828829 CGGTGTAAAAGATTGTACTCCCT 58.171 43.478 7.94 0.00 32.59 4.20
501 502 3.373130 GCGGTGTAAAAGATTGTACTCCC 59.627 47.826 7.94 2.03 32.59 4.30
502 503 3.998341 TGCGGTGTAAAAGATTGTACTCC 59.002 43.478 4.56 4.56 32.79 3.85
503 504 5.600908 TTGCGGTGTAAAAGATTGTACTC 57.399 39.130 0.00 0.00 0.00 2.59
504 505 6.380095 TTTTGCGGTGTAAAAGATTGTACT 57.620 33.333 0.00 0.00 0.00 2.73
526 527 7.778470 TGAATTTTCAACACGGCTAATTTTT 57.222 28.000 0.00 0.00 33.55 1.94
527 528 7.778470 TTGAATTTTCAACACGGCTAATTTT 57.222 28.000 1.66 0.00 41.88 1.82
528 529 7.778470 TTTGAATTTTCAACACGGCTAATTT 57.222 28.000 5.26 0.00 45.99 1.82
592 593 1.121378 TGGTGTTCCACGTCTACCAA 58.879 50.000 0.00 0.00 38.39 3.67
640 655 2.737376 GTGGAACGCGAGGTGGAC 60.737 66.667 15.93 0.00 0.00 4.02
757 781 6.659242 ACCTTGGTTTAAATAGACTGTCATGG 59.341 38.462 10.88 0.62 0.00 3.66
995 1024 2.996734 CCTGGGCGGCCATTGTTT 60.997 61.111 32.84 0.00 0.00 2.83
1461 1508 0.455464 TATGCACGTCCTCGAACACG 60.455 55.000 12.91 12.91 41.90 4.49
1563 1610 2.372074 GGTGCCGATCCCCAGGTTA 61.372 63.158 0.00 0.00 0.00 2.85
1596 1643 0.620556 GCCCCTTGAAGAGGTCATGA 59.379 55.000 0.00 0.00 44.71 3.07
1683 1730 2.185867 ACGGTGCACTTGACGTGT 59.814 55.556 17.98 1.61 45.57 4.49
1743 1790 1.924524 CCGGCAACATAGTTGACTACG 59.075 52.381 13.58 10.59 0.00 3.51
1770 1817 0.466555 CCTTTGGGACGGTGTGGAAA 60.467 55.000 0.00 0.00 33.58 3.13
1842 1889 3.118075 TGCCCTTTCCATCGATTCACATA 60.118 43.478 0.00 0.00 0.00 2.29
1936 2043 6.541641 ACTCCACTACCGTAGTACAAGATTAG 59.458 42.308 10.92 3.51 37.23 1.73
1949 2056 8.474710 AGTCATAAATTATACTCCACTACCGT 57.525 34.615 0.00 0.00 0.00 4.83
1957 2064 9.482627 CCTCAGTTGAGTCATAAATTATACTCC 57.517 37.037 8.23 5.96 40.48 3.85
1970 2139 3.244215 CCTTGTTAGCCTCAGTTGAGTCA 60.244 47.826 8.23 0.00 40.48 3.41
2003 2172 9.894783 CACAAGCTACGTACAAAGAGTATATAT 57.105 33.333 0.00 0.00 34.67 0.86
2004 2173 7.859377 GCACAAGCTACGTACAAAGAGTATATA 59.141 37.037 0.00 0.00 37.91 0.86
2147 2316 3.866651 CCTCAAACATGACAGGTCCTAG 58.133 50.000 0.00 0.00 0.00 3.02
2206 2375 2.509336 CTACGTTGGCGGCCTCTG 60.509 66.667 21.46 11.67 43.45 3.35
2215 2384 2.159707 CCAGTCATTTTCGCTACGTTGG 60.160 50.000 0.00 0.00 0.00 3.77
2242 2411 3.244665 TGAAGCCTGCTTTCATGAAGAGA 60.245 43.478 8.41 0.00 37.57 3.10
2383 2552 5.509840 GCACACCACCCATACATAAACAAAA 60.510 40.000 0.00 0.00 0.00 2.44
2624 2806 4.447724 CCGGTCATACTTATTCCATCAACG 59.552 45.833 0.00 0.00 0.00 4.10
2630 2812 3.389656 TCATGCCGGTCATACTTATTCCA 59.610 43.478 1.90 0.00 33.19 3.53
2666 2848 4.206375 TCGTAGTCAATATTGTACCCGGA 58.794 43.478 14.97 4.92 0.00 5.14
2668 2850 7.473027 AATTTCGTAGTCAATATTGTACCCG 57.527 36.000 14.97 14.63 0.00 5.28
2711 2895 5.694006 CCATTCATTGATAGACCTCGAAGAC 59.306 44.000 0.00 0.00 0.00 3.01
2717 2901 6.599244 TGTGAAACCATTCATTGATAGACCTC 59.401 38.462 0.00 0.00 46.67 3.85
2720 2904 9.132521 CTTTTGTGAAACCATTCATTGATAGAC 57.867 33.333 0.00 0.00 46.67 2.59
2726 2910 9.866936 CATAAACTTTTGTGAAACCATTCATTG 57.133 29.630 0.00 0.00 46.67 2.82
2770 2954 8.715191 TTCAAAGGTTTTTAAGAGTACGTACA 57.285 30.769 26.55 3.86 0.00 2.90
2852 3036 6.906901 AGGATAATAACCTTGGGAGTGTAAGA 59.093 38.462 0.00 0.00 33.55 2.10
2865 3049 9.822727 TTTCCTCAAAAAGAAGGATAATAACCT 57.177 29.630 0.00 0.00 39.69 3.50
2922 3577 6.945636 TTCTTGGAGGACTTATGTAAAGGA 57.054 37.500 0.00 0.00 0.00 3.36
2925 3580 6.821665 CGGATTTCTTGGAGGACTTATGTAAA 59.178 38.462 0.00 0.00 0.00 2.01
2948 3619 3.026630 TGCAGAAGAAAGACTACACGG 57.973 47.619 0.00 0.00 0.00 4.94
3032 3703 6.433093 ACAAACTTCTGTGTTTCTACAAGGTT 59.567 34.615 0.00 0.00 37.98 3.50
3102 3777 6.250819 ACAATCTTTTCTTATCGCGTTCATG 58.749 36.000 5.77 0.00 0.00 3.07
3109 3784 3.546218 GGCCGACAATCTTTTCTTATCGC 60.546 47.826 0.00 0.00 0.00 4.58
3115 3790 2.286365 TTGGGCCGACAATCTTTTCT 57.714 45.000 0.00 0.00 0.00 2.52
3117 3792 1.066929 GCATTGGGCCGACAATCTTTT 60.067 47.619 4.40 0.00 38.94 2.27
3124 3799 3.866379 AAGCTGCATTGGGCCGACA 62.866 57.895 1.02 0.00 43.89 4.35
3183 3858 4.404073 ACCACAAAGCCACAAAGAACAATA 59.596 37.500 0.00 0.00 0.00 1.90
3184 3859 3.197549 ACCACAAAGCCACAAAGAACAAT 59.802 39.130 0.00 0.00 0.00 2.71
3190 3865 1.471327 CCACACCACAAAGCCACAAAG 60.471 52.381 0.00 0.00 0.00 2.77
3226 3901 9.674068 TGTAAGTATTTTCTGTAACATATGCCA 57.326 29.630 1.58 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.