Multiple sequence alignment - TraesCS7A01G537500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G537500 chr7A 100.000 3273 0 0 1 3273 714760873 714757601 0.000000e+00 6045
1 TraesCS7A01G537500 chr7A 81.575 1232 169 37 1209 2409 714823162 714821958 0.000000e+00 965
2 TraesCS7A01G537500 chr7D 91.225 2017 119 30 1 1980 620196401 620198396 0.000000e+00 2691
3 TraesCS7A01G537500 chr7D 82.097 1240 174 24 1205 2409 620116277 620117503 0.000000e+00 1016
4 TraesCS7A01G537500 chr7D 89.834 541 51 2 2017 2557 620198540 620199076 0.000000e+00 691
5 TraesCS7A01G537500 chr7D 82.105 760 104 16 1205 1950 620143055 620143796 3.590000e-174 621
6 TraesCS7A01G537500 chr7D 81.389 720 105 14 975 1676 620085461 620086169 7.930000e-156 560
7 TraesCS7A01G537500 chr7D 81.508 557 90 10 2006 2557 620143911 620144459 2.320000e-121 446
8 TraesCS7A01G537500 chr7D 83.632 391 45 9 2592 2972 620199075 620199456 1.870000e-92 350
9 TraesCS7A01G537500 chr7D 94.495 109 4 2 3164 3270 556801452 556801344 2.020000e-37 167
10 TraesCS7A01G537500 chr7D 92.793 111 6 2 3163 3271 124296481 124296371 3.380000e-35 159
11 TraesCS7A01G537500 chr7B 90.015 1953 129 26 668 2557 716308746 716306797 0.000000e+00 2466
12 TraesCS7A01G537500 chr7B 84.189 721 99 11 1206 1923 716466949 716466241 0.000000e+00 686
13 TraesCS7A01G537500 chr7B 82.955 704 97 11 1215 1916 716999545 717000227 6.000000e-172 614
14 TraesCS7A01G537500 chr7B 86.736 573 35 7 2592 3160 716306798 716306263 1.680000e-167 599
15 TraesCS7A01G537500 chr7B 81.180 712 97 16 975 1670 716370404 716369714 3.720000e-149 538
16 TraesCS7A01G537500 chr7B 86.076 474 63 3 1205 1676 716315999 716315527 1.050000e-139 507
17 TraesCS7A01G537500 chr7B 90.033 301 26 4 1691 1988 716315445 716315146 1.420000e-103 387
18 TraesCS7A01G537500 chr7B 81.010 495 63 15 2017 2503 716369181 716368710 6.670000e-97 364
19 TraesCS7A01G537500 chr7B 82.368 397 42 10 2013 2409 716465874 716465506 1.470000e-83 320
20 TraesCS7A01G537500 chr7B 84.921 252 35 3 1736 1985 716369508 716369258 5.420000e-63 252
21 TraesCS7A01G537500 chr7B 79.124 388 24 21 324 669 716309277 716308905 7.110000e-52 215
22 TraesCS7A01G537500 chrUn 85.356 519 66 9 1166 1676 466806746 466807262 2.240000e-146 529
23 TraesCS7A01G537500 chr4A 92.793 111 6 2 3163 3271 598811146 598811036 3.380000e-35 159
24 TraesCS7A01G537500 chr4A 92.793 111 6 2 3163 3271 658181006 658181116 3.380000e-35 159
25 TraesCS7A01G537500 chr3D 92.793 111 6 2 3163 3271 560407 560517 3.380000e-35 159
26 TraesCS7A01G537500 chr3D 92.793 111 6 2 3163 3271 576621 576731 3.380000e-35 159
27 TraesCS7A01G537500 chr3D 92.793 111 6 2 3163 3271 119412304 119412414 3.380000e-35 159
28 TraesCS7A01G537500 chr3D 92.793 111 6 2 3163 3271 390413544 390413434 3.380000e-35 159
29 TraesCS7A01G537500 chr3B 92.793 111 6 2 3163 3271 799299296 799299186 3.380000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G537500 chr7A 714757601 714760873 3272 True 6045.000000 6045 100.000000 1 3273 1 chr7A.!!$R1 3272
1 TraesCS7A01G537500 chr7A 714821958 714823162 1204 True 965.000000 965 81.575000 1209 2409 1 chr7A.!!$R2 1200
2 TraesCS7A01G537500 chr7D 620196401 620199456 3055 False 1244.000000 2691 88.230333 1 2972 3 chr7D.!!$F4 2971
3 TraesCS7A01G537500 chr7D 620116277 620117503 1226 False 1016.000000 1016 82.097000 1205 2409 1 chr7D.!!$F2 1204
4 TraesCS7A01G537500 chr7D 620085461 620086169 708 False 560.000000 560 81.389000 975 1676 1 chr7D.!!$F1 701
5 TraesCS7A01G537500 chr7D 620143055 620144459 1404 False 533.500000 621 81.806500 1205 2557 2 chr7D.!!$F3 1352
6 TraesCS7A01G537500 chr7B 716306263 716309277 3014 True 1093.333333 2466 85.291667 324 3160 3 chr7B.!!$R1 2836
7 TraesCS7A01G537500 chr7B 716999545 717000227 682 False 614.000000 614 82.955000 1215 1916 1 chr7B.!!$F1 701
8 TraesCS7A01G537500 chr7B 716465506 716466949 1443 True 503.000000 686 83.278500 1206 2409 2 chr7B.!!$R4 1203
9 TraesCS7A01G537500 chr7B 716315146 716315999 853 True 447.000000 507 88.054500 1205 1988 2 chr7B.!!$R2 783
10 TraesCS7A01G537500 chr7B 716368710 716370404 1694 True 384.666667 538 82.370333 975 2503 3 chr7B.!!$R3 1528
11 TraesCS7A01G537500 chrUn 466806746 466807262 516 False 529.000000 529 85.356000 1166 1676 1 chrUn.!!$F1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 593 0.745486 TTCATGCATGTGGGAGCTCG 60.745 55.0 25.43 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 3230 0.385029 TCTTCGTCGTGGTTTCCGAA 59.615 50.0 0.0 0.0 35.89 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.570926 ATATGTACTGCCCGTCATACG 57.429 47.619 0.00 0.00 42.11 3.06
138 139 2.708325 AGGAGAAGAGGCAGAAACAAGT 59.292 45.455 0.00 0.00 0.00 3.16
139 140 3.070748 GGAGAAGAGGCAGAAACAAGTC 58.929 50.000 0.00 0.00 0.00 3.01
179 180 9.702726 CGTATTTGTTATTAGATGTTCTTGGTG 57.297 33.333 0.00 0.00 0.00 4.17
373 374 1.760613 TCCTATAGGCCAGGTCAAACG 59.239 52.381 14.50 0.00 34.56 3.60
503 531 2.837883 GCTGCCCATGTATGTGCGG 61.838 63.158 4.10 4.10 39.99 5.69
531 559 6.019559 GTGGCTTTGCTAGTTTCAAAAAGAAG 60.020 38.462 0.00 0.00 37.57 2.85
556 593 0.745486 TTCATGCATGTGGGAGCTCG 60.745 55.000 25.43 0.00 0.00 5.03
599 643 2.288518 GCTAAAGCACCCTATCTCGAGG 60.289 54.545 13.56 0.00 41.59 4.63
615 659 6.636562 TCTCGAGGAACCTAATAGTCAATC 57.363 41.667 13.56 0.00 0.00 2.67
619 663 5.220989 CGAGGAACCTAATAGTCAATCGACA 60.221 44.000 0.00 0.00 45.23 4.35
633 677 2.492019 TCGACATTGCATAGAGACGG 57.508 50.000 0.00 0.00 0.00 4.79
634 678 1.067060 TCGACATTGCATAGAGACGGG 59.933 52.381 0.00 0.00 0.00 5.28
635 679 1.067060 CGACATTGCATAGAGACGGGA 59.933 52.381 0.00 0.00 0.00 5.14
650 694 1.075659 GGGAGGAGCCACTTTGCTT 59.924 57.895 0.00 0.00 42.95 3.91
715 919 7.277981 GCAAAGGACGAATCTTCTACAGAAATA 59.722 37.037 0.00 0.00 34.16 1.40
721 931 9.400638 GACGAATCTTCTACAGAAATACCTATG 57.599 37.037 0.00 0.00 34.16 2.23
792 1002 1.339727 ACATTCTTACCGTGCCCCTTC 60.340 52.381 0.00 0.00 0.00 3.46
808 1018 6.603599 GTGCCCCTTCTTTAATTCTATGACTT 59.396 38.462 0.00 0.00 0.00 3.01
830 1040 1.075601 TCTTTCCATCAAGCCCACCT 58.924 50.000 0.00 0.00 0.00 4.00
882 1092 3.494626 GCTAATGCATGTATAGTGTGCGT 59.505 43.478 0.00 0.00 41.61 5.24
883 1093 3.950087 AATGCATGTATAGTGTGCGTG 57.050 42.857 0.00 0.00 41.61 5.34
884 1094 2.378445 TGCATGTATAGTGTGCGTGT 57.622 45.000 0.00 0.00 41.61 4.49
885 1095 1.999024 TGCATGTATAGTGTGCGTGTG 59.001 47.619 0.00 0.00 41.61 3.82
913 1127 6.842280 TGTGTATATATACAGACCCACCAACT 59.158 38.462 23.03 0.00 43.32 3.16
939 1154 1.771255 CCTTCCATAGCCCAGCTAACT 59.229 52.381 0.00 0.00 44.62 2.24
942 1159 2.609747 TCCATAGCCCAGCTAACTAGG 58.390 52.381 0.00 1.71 44.62 3.02
1053 1277 2.370633 GCCCTCCTCCTCCTCCTT 59.629 66.667 0.00 0.00 0.00 3.36
1139 1368 9.643652 CGCTCTCTCAAACAAAAATCTTATATC 57.356 33.333 0.00 0.00 0.00 1.63
1162 1396 1.705337 AATCCAGCGCATGTACGTGC 61.705 55.000 26.90 26.90 42.82 5.34
1181 1416 9.341899 GTACGTGCATTTCTTGATTAATTCTTT 57.658 29.630 0.00 0.00 0.00 2.52
1184 1419 9.079833 CGTGCATTTCTTGATTAATTCTTTCAT 57.920 29.630 0.00 0.00 0.00 2.57
1375 1618 2.515398 CACAGGCACCCAACCTCA 59.485 61.111 0.00 0.00 34.42 3.86
1509 1752 0.773644 ACCACCTCAAGCAAGTCCAT 59.226 50.000 0.00 0.00 0.00 3.41
1587 1830 1.668151 GGTTCACCTCAGTGCCGAC 60.668 63.158 0.00 0.00 44.16 4.79
1599 1842 1.146041 TGCCGACAACAAGACTGCT 59.854 52.632 0.00 0.00 0.00 4.24
1635 1878 4.227134 AAGATCGGCAGGCGCGAT 62.227 61.111 12.10 13.55 39.92 4.58
1644 1887 1.718757 GCAGGCGCGATCATTTCCTT 61.719 55.000 12.10 0.00 0.00 3.36
1689 1937 0.776810 TCCATCTCCTGCCAACCAAA 59.223 50.000 0.00 0.00 0.00 3.28
1700 2073 5.365314 TCCTGCCAACCAAACTTTCTTTAAT 59.635 36.000 0.00 0.00 0.00 1.40
1701 2074 6.054941 CCTGCCAACCAAACTTTCTTTAATT 58.945 36.000 0.00 0.00 0.00 1.40
1702 2075 6.542005 CCTGCCAACCAAACTTTCTTTAATTT 59.458 34.615 0.00 0.00 0.00 1.82
1733 2135 9.444600 GGAGTTAAAGTTGTCAACTAATCCATA 57.555 33.333 20.81 7.46 41.91 2.74
1769 2171 4.837860 CCTTACCTGAAGAGGATAGCAGAT 59.162 45.833 0.00 0.00 42.93 2.90
1951 2361 4.901197 TTACTGAGCACATTTAGACCCA 57.099 40.909 0.00 0.00 0.00 4.51
1974 2631 8.474831 CCCAGATTCTAAAATTACGGGAAATTT 58.525 33.333 0.00 0.00 40.02 1.82
1990 2647 4.330620 GGAAATTTGCTTACGGACATACGA 59.669 41.667 1.93 0.00 37.61 3.43
1991 2648 5.163834 GGAAATTTGCTTACGGACATACGAA 60.164 40.000 1.93 0.00 37.61 3.85
1994 2673 3.300852 TGCTTACGGACATACGAACAA 57.699 42.857 0.00 0.00 37.61 2.83
1997 2676 4.799949 TGCTTACGGACATACGAACAATAC 59.200 41.667 0.00 0.00 37.61 1.89
2217 3017 5.422331 AGAAGGTGAACGGAAGAGATATCAA 59.578 40.000 5.32 0.00 0.00 2.57
2277 3077 3.062763 CTGCCGCTGATCAGTAATTAGG 58.937 50.000 23.38 16.62 0.00 2.69
2280 3080 3.495001 GCCGCTGATCAGTAATTAGGTTC 59.505 47.826 23.38 2.37 0.00 3.62
2290 3090 7.979444 TCAGTAATTAGGTTCAAACTTCAGG 57.021 36.000 0.00 0.00 0.00 3.86
2336 3140 7.389603 TGCGTGTTAATGTAAGATAATCTCG 57.610 36.000 0.00 0.00 0.00 4.04
2337 3141 6.074516 TGCGTGTTAATGTAAGATAATCTCGC 60.075 38.462 0.00 0.00 37.52 5.03
2338 3142 6.144080 GCGTGTTAATGTAAGATAATCTCGCT 59.856 38.462 0.00 0.00 34.91 4.93
2339 3143 7.617528 GCGTGTTAATGTAAGATAATCTCGCTC 60.618 40.741 0.00 0.00 34.91 5.03
2345 3149 8.454293 AATGTAAGATAATCTCGCTCATTACG 57.546 34.615 0.00 0.00 0.00 3.18
2373 3177 9.586435 ACCTTAATTTGACTTGCTTATTATTGC 57.414 29.630 0.00 0.00 0.00 3.56
2426 3230 2.397044 TTTTCCCATGCCCTCAGTTT 57.603 45.000 0.00 0.00 0.00 2.66
2428 3232 1.923356 TTCCCATGCCCTCAGTTTTC 58.077 50.000 0.00 0.00 0.00 2.29
2440 3248 1.935199 TCAGTTTTCGGAAACCACGAC 59.065 47.619 15.81 0.00 44.97 4.34
2486 3301 2.865119 TGCAATGATGGTGACTCTGT 57.135 45.000 0.00 0.00 0.00 3.41
2504 3320 1.621317 TGTACCAAGCGGAGATGTTCA 59.379 47.619 0.00 0.00 35.59 3.18
2553 3371 4.642445 TGTAAAGTCGAAGTCACAGACA 57.358 40.909 0.00 0.00 37.36 3.41
2555 3373 4.982295 TGTAAAGTCGAAGTCACAGACATG 59.018 41.667 0.00 0.00 37.36 3.21
2556 3374 3.735237 AAGTCGAAGTCACAGACATGT 57.265 42.857 0.00 0.00 41.57 3.21
2577 3395 9.369904 ACATGTGTCCAATAAATAATTTCAAGC 57.630 29.630 0.00 0.00 0.00 4.01
2578 3396 8.533965 CATGTGTCCAATAAATAATTTCAAGCG 58.466 33.333 0.00 0.00 0.00 4.68
2579 3397 7.032580 TGTGTCCAATAAATAATTTCAAGCGG 58.967 34.615 0.00 0.00 0.00 5.52
2580 3398 7.094162 TGTGTCCAATAAATAATTTCAAGCGGA 60.094 33.333 0.00 0.00 0.00 5.54
2581 3399 7.432252 GTGTCCAATAAATAATTTCAAGCGGAG 59.568 37.037 0.00 0.00 0.00 4.63
2582 3400 7.338196 TGTCCAATAAATAATTTCAAGCGGAGA 59.662 33.333 0.00 0.00 0.00 3.71
2583 3401 8.352942 GTCCAATAAATAATTTCAAGCGGAGAT 58.647 33.333 0.00 0.00 0.00 2.75
2584 3402 8.352201 TCCAATAAATAATTTCAAGCGGAGATG 58.648 33.333 0.00 0.00 0.00 2.90
2585 3403 8.137437 CCAATAAATAATTTCAAGCGGAGATGT 58.863 33.333 0.00 0.00 0.00 3.06
2586 3404 9.520204 CAATAAATAATTTCAAGCGGAGATGTT 57.480 29.630 0.00 0.00 0.00 2.71
2587 3405 9.736023 AATAAATAATTTCAAGCGGAGATGTTC 57.264 29.630 0.00 0.00 0.00 3.18
2588 3406 6.757897 AATAATTTCAAGCGGAGATGTTCA 57.242 33.333 0.00 0.00 0.00 3.18
2589 3407 6.949352 ATAATTTCAAGCGGAGATGTTCAT 57.051 33.333 0.00 0.00 0.00 2.57
2590 3408 8.450578 AATAATTTCAAGCGGAGATGTTCATA 57.549 30.769 0.00 0.00 0.00 2.15
2658 3479 4.515191 TCCAATCTACGCCATCTTATTTGC 59.485 41.667 0.00 0.00 0.00 3.68
2672 3496 8.764287 CCATCTTATTTGCGTTTTCTTTCTTTT 58.236 29.630 0.00 0.00 0.00 2.27
2694 3518 4.695217 TGTTTCAACAAAAAGCGTCTCT 57.305 36.364 0.00 0.00 35.67 3.10
2702 3526 3.250744 CAAAAAGCGTCTCTATCACGGA 58.749 45.455 0.00 0.00 37.74 4.69
2705 3529 0.312416 AGCGTCTCTATCACGGATGC 59.688 55.000 0.00 0.00 40.89 3.91
2751 3579 7.012704 GTGCTAGCTCATGGATTTATTTCTTCA 59.987 37.037 17.23 0.00 0.00 3.02
2798 3627 8.083462 TCCATCTTATTATGTTGTATCGTTGC 57.917 34.615 0.00 0.00 0.00 4.17
2815 3644 6.417191 TCGTTGCCATCTTTAATTACAGTC 57.583 37.500 0.00 0.00 0.00 3.51
2875 3704 5.276461 TCTTCAAGAAAGTGTGCTACAGA 57.724 39.130 0.00 0.00 36.31 3.41
2880 3709 5.698089 TCAAGAAAGTGTGCTACAGAATCTG 59.302 40.000 8.98 8.98 37.52 2.90
2941 3771 8.305317 GTCTTCCTTCTTTACCGCACTATATAT 58.695 37.037 0.00 0.00 0.00 0.86
2942 3772 8.304596 TCTTCCTTCTTTACCGCACTATATATG 58.695 37.037 0.00 0.00 0.00 1.78
2944 3774 6.070995 TCCTTCTTTACCGCACTATATATGGG 60.071 42.308 0.80 0.00 0.00 4.00
2992 3822 2.294233 AGTGCTATGCTTGTGTTGTTGG 59.706 45.455 0.00 0.00 0.00 3.77
2998 3828 2.374184 TGCTTGTGTTGTTGGCTTAGT 58.626 42.857 0.00 0.00 0.00 2.24
3082 3912 0.812811 CGTCTGGAGATGTGCATGGG 60.813 60.000 0.00 0.00 0.00 4.00
3097 3927 3.443588 GGGCCGACCAATAATGCC 58.556 61.111 0.00 0.00 41.42 4.40
3098 3928 2.551912 GGGCCGACCAATAATGCCG 61.552 63.158 0.00 0.00 43.09 5.69
3107 3937 1.532868 CCAATAATGCCGAGCTACTGC 59.467 52.381 0.00 0.00 40.05 4.40
3133 3963 1.888436 GACCGTCCATGACAGGAGCA 61.888 60.000 0.00 0.00 38.64 4.26
3160 3990 3.255888 CCATAGGCTGTACGAGATAGCAA 59.744 47.826 0.00 1.99 43.84 3.91
3161 3991 4.081972 CCATAGGCTGTACGAGATAGCAAT 60.082 45.833 0.00 3.78 43.84 3.56
3162 3992 5.125578 CCATAGGCTGTACGAGATAGCAATA 59.874 44.000 0.00 5.71 43.84 1.90
3163 3993 6.350194 CCATAGGCTGTACGAGATAGCAATAA 60.350 42.308 0.00 0.00 43.84 1.40
3164 3994 5.127693 AGGCTGTACGAGATAGCAATAAG 57.872 43.478 11.48 0.00 43.84 1.73
3165 3995 4.021894 AGGCTGTACGAGATAGCAATAAGG 60.022 45.833 11.48 0.00 43.84 2.69
3166 3996 4.262079 GGCTGTACGAGATAGCAATAAGGT 60.262 45.833 11.48 0.00 43.84 3.50
3167 3997 5.290386 GCTGTACGAGATAGCAATAAGGTT 58.710 41.667 0.00 0.00 41.74 3.50
3168 3998 5.753921 GCTGTACGAGATAGCAATAAGGTTT 59.246 40.000 0.00 0.00 41.74 3.27
3169 3999 6.258068 GCTGTACGAGATAGCAATAAGGTTTT 59.742 38.462 0.00 0.00 41.74 2.43
3170 4000 7.534085 TGTACGAGATAGCAATAAGGTTTTG 57.466 36.000 0.00 0.00 0.00 2.44
3171 4001 6.537301 TGTACGAGATAGCAATAAGGTTTTGG 59.463 38.462 0.00 0.00 0.00 3.28
3172 4002 5.497474 ACGAGATAGCAATAAGGTTTTGGT 58.503 37.500 0.00 0.00 38.30 3.67
3173 4003 5.944007 ACGAGATAGCAATAAGGTTTTGGTT 59.056 36.000 0.00 0.00 36.33 3.67
3174 4004 6.093633 ACGAGATAGCAATAAGGTTTTGGTTC 59.906 38.462 0.00 0.00 36.33 3.62
3175 4005 6.458342 CGAGATAGCAATAAGGTTTTGGTTCC 60.458 42.308 0.00 0.00 36.33 3.62
3176 4006 5.656859 AGATAGCAATAAGGTTTTGGTTCCC 59.343 40.000 0.00 0.00 36.33 3.97
3177 4007 2.560981 AGCAATAAGGTTTTGGTTCCCG 59.439 45.455 0.00 0.00 31.11 5.14
3178 4008 2.559231 GCAATAAGGTTTTGGTTCCCGA 59.441 45.455 0.00 0.00 0.00 5.14
3179 4009 3.006003 GCAATAAGGTTTTGGTTCCCGAA 59.994 43.478 0.00 0.00 0.00 4.30
3180 4010 4.322424 GCAATAAGGTTTTGGTTCCCGAAT 60.322 41.667 0.00 0.00 0.00 3.34
3181 4011 5.167845 CAATAAGGTTTTGGTTCCCGAATG 58.832 41.667 0.00 0.00 0.00 2.67
3182 4012 2.668144 AGGTTTTGGTTCCCGAATGA 57.332 45.000 0.00 0.00 0.00 2.57
3183 4013 2.514803 AGGTTTTGGTTCCCGAATGAG 58.485 47.619 0.00 0.00 0.00 2.90
3184 4014 1.544246 GGTTTTGGTTCCCGAATGAGG 59.456 52.381 0.00 0.00 0.00 3.86
3185 4015 1.067846 GTTTTGGTTCCCGAATGAGGC 60.068 52.381 0.00 0.00 0.00 4.70
3186 4016 0.111446 TTTGGTTCCCGAATGAGGCA 59.889 50.000 0.00 0.00 0.00 4.75
3187 4017 0.111446 TTGGTTCCCGAATGAGGCAA 59.889 50.000 0.00 0.00 0.00 4.52
3188 4018 0.331278 TGGTTCCCGAATGAGGCAAT 59.669 50.000 0.00 0.00 0.00 3.56
3189 4019 1.272425 TGGTTCCCGAATGAGGCAATT 60.272 47.619 0.00 0.00 0.00 2.32
3190 4020 1.824852 GGTTCCCGAATGAGGCAATTT 59.175 47.619 0.00 0.00 0.00 1.82
3191 4021 2.233676 GGTTCCCGAATGAGGCAATTTT 59.766 45.455 0.00 0.00 0.00 1.82
3192 4022 3.445805 GGTTCCCGAATGAGGCAATTTTA 59.554 43.478 0.00 0.00 0.00 1.52
3193 4023 4.421058 GTTCCCGAATGAGGCAATTTTAC 58.579 43.478 0.00 0.00 0.00 2.01
3194 4024 3.020984 TCCCGAATGAGGCAATTTTACC 58.979 45.455 0.00 0.00 0.00 2.85
3195 4025 2.223479 CCCGAATGAGGCAATTTTACCG 60.223 50.000 0.00 0.00 0.00 4.02
3196 4026 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
3197 4027 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
3198 4028 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
3199 4029 2.122783 TGAGGCAATTTTACCGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
3200 4030 1.340600 TGAGGCAATTTTACCGAGGGG 60.341 52.381 0.00 0.00 40.11 4.79
3201 4031 0.996583 AGGCAATTTTACCGAGGGGA 59.003 50.000 0.00 0.00 36.97 4.81
3202 4032 1.100510 GGCAATTTTACCGAGGGGAC 58.899 55.000 0.00 0.00 36.97 4.46
3204 4034 1.743394 GCAATTTTACCGAGGGGACTG 59.257 52.381 0.00 0.00 44.43 3.51
3205 4035 2.365582 CAATTTTACCGAGGGGACTGG 58.634 52.381 0.00 0.00 44.43 4.00
3206 4036 1.665137 ATTTTACCGAGGGGACTGGT 58.335 50.000 0.00 0.00 44.43 4.00
3207 4037 2.323999 TTTTACCGAGGGGACTGGTA 57.676 50.000 0.00 0.00 44.43 3.25
3208 4038 2.323999 TTTACCGAGGGGACTGGTAA 57.676 50.000 0.00 0.00 44.75 2.85
3209 4039 2.323999 TTACCGAGGGGACTGGTAAA 57.676 50.000 0.82 0.00 44.13 2.01
3210 4040 2.555732 TACCGAGGGGACTGGTAAAT 57.444 50.000 0.00 0.00 44.43 1.40
3211 4041 0.909623 ACCGAGGGGACTGGTAAATG 59.090 55.000 0.00 0.00 44.43 2.32
3212 4042 0.909623 CCGAGGGGACTGGTAAATGT 59.090 55.000 0.00 0.00 44.43 2.71
3213 4043 1.406887 CCGAGGGGACTGGTAAATGTG 60.407 57.143 0.00 0.00 44.43 3.21
3214 4044 1.406887 CGAGGGGACTGGTAAATGTGG 60.407 57.143 0.00 0.00 44.43 4.17
3215 4045 1.633945 GAGGGGACTGGTAAATGTGGT 59.366 52.381 0.00 0.00 44.43 4.16
3216 4046 2.041216 GAGGGGACTGGTAAATGTGGTT 59.959 50.000 0.00 0.00 44.43 3.67
3217 4047 3.261962 AGGGGACTGGTAAATGTGGTTA 58.738 45.455 0.00 0.00 41.13 2.85
3218 4048 3.009805 AGGGGACTGGTAAATGTGGTTAC 59.990 47.826 0.00 0.00 41.13 2.50
3233 4063 3.775261 GGTTACCACAGTTACCAGGAA 57.225 47.619 0.00 0.00 43.72 3.36
3234 4064 4.089408 GGTTACCACAGTTACCAGGAAA 57.911 45.455 0.00 0.00 43.72 3.13
3235 4065 4.659115 GGTTACCACAGTTACCAGGAAAT 58.341 43.478 0.00 0.00 43.72 2.17
3236 4066 5.807909 GGTTACCACAGTTACCAGGAAATA 58.192 41.667 0.00 0.00 43.72 1.40
3237 4067 5.645067 GGTTACCACAGTTACCAGGAAATAC 59.355 44.000 0.00 0.00 43.72 1.89
3238 4068 4.296621 ACCACAGTTACCAGGAAATACC 57.703 45.455 0.00 0.00 39.35 2.73
3239 4069 3.267483 CCACAGTTACCAGGAAATACCG 58.733 50.000 0.00 0.00 44.74 4.02
3240 4070 3.055675 CCACAGTTACCAGGAAATACCGA 60.056 47.826 0.00 0.00 44.74 4.69
3241 4071 4.181578 CACAGTTACCAGGAAATACCGAG 58.818 47.826 0.00 0.00 44.74 4.63
3242 4072 4.081862 CACAGTTACCAGGAAATACCGAGA 60.082 45.833 0.00 0.00 44.74 4.04
3243 4073 4.529377 ACAGTTACCAGGAAATACCGAGAA 59.471 41.667 0.00 0.00 44.74 2.87
3244 4074 5.012354 ACAGTTACCAGGAAATACCGAGAAA 59.988 40.000 0.00 0.00 44.74 2.52
3245 4075 6.113411 CAGTTACCAGGAAATACCGAGAAAT 58.887 40.000 0.00 0.00 44.74 2.17
3246 4076 7.093201 ACAGTTACCAGGAAATACCGAGAAATA 60.093 37.037 0.00 0.00 44.74 1.40
3247 4077 7.224167 CAGTTACCAGGAAATACCGAGAAATAC 59.776 40.741 0.00 0.00 44.74 1.89
3248 4078 5.032327 ACCAGGAAATACCGAGAAATACC 57.968 43.478 0.00 0.00 44.74 2.73
3249 4079 4.056050 CCAGGAAATACCGAGAAATACCG 58.944 47.826 0.00 0.00 44.74 4.02
3250 4080 4.202182 CCAGGAAATACCGAGAAATACCGA 60.202 45.833 0.00 0.00 44.74 4.69
3251 4081 4.982916 CAGGAAATACCGAGAAATACCGAG 59.017 45.833 0.00 0.00 44.74 4.63
3252 4082 4.891756 AGGAAATACCGAGAAATACCGAGA 59.108 41.667 0.00 0.00 44.74 4.04
3253 4083 5.361857 AGGAAATACCGAGAAATACCGAGAA 59.638 40.000 0.00 0.00 44.74 2.87
3254 4084 6.041751 AGGAAATACCGAGAAATACCGAGAAT 59.958 38.462 0.00 0.00 44.74 2.40
3255 4085 7.232127 AGGAAATACCGAGAAATACCGAGAATA 59.768 37.037 0.00 0.00 44.74 1.75
3256 4086 8.033626 GGAAATACCGAGAAATACCGAGAATAT 58.966 37.037 0.00 0.00 0.00 1.28
3257 4087 9.420551 GAAATACCGAGAAATACCGAGAATATT 57.579 33.333 0.00 0.00 0.00 1.28
3258 4088 9.774413 AAATACCGAGAAATACCGAGAATATTT 57.226 29.630 0.00 0.00 35.43 1.40
3259 4089 8.983307 ATACCGAGAAATACCGAGAATATTTC 57.017 34.615 8.71 8.71 44.27 2.17
3260 4090 5.919141 ACCGAGAAATACCGAGAATATTTCG 59.081 40.000 10.33 10.96 46.64 3.46
3261 4091 6.147581 CCGAGAAATACCGAGAATATTTCGA 58.852 40.000 16.51 0.00 46.64 3.71
3262 4092 6.305877 CCGAGAAATACCGAGAATATTTCGAG 59.694 42.308 16.51 11.24 46.64 4.04
3263 4093 6.183359 CGAGAAATACCGAGAATATTTCGAGC 60.183 42.308 16.51 5.50 46.64 5.03
3264 4094 6.513180 AGAAATACCGAGAATATTTCGAGCA 58.487 36.000 16.51 6.31 46.64 4.26
3265 4095 6.984474 AGAAATACCGAGAATATTTCGAGCAA 59.016 34.615 16.51 4.87 46.64 3.91
3266 4096 7.657761 AGAAATACCGAGAATATTTCGAGCAAT 59.342 33.333 16.51 0.00 46.64 3.56
3267 4097 7.730364 AATACCGAGAATATTTCGAGCAATT 57.270 32.000 16.51 9.93 40.36 2.32
3268 4098 7.730364 ATACCGAGAATATTTCGAGCAATTT 57.270 32.000 16.51 0.00 40.36 1.82
3269 4099 6.436843 ACCGAGAATATTTCGAGCAATTTT 57.563 33.333 16.51 0.00 40.36 1.82
3270 4100 7.548196 ACCGAGAATATTTCGAGCAATTTTA 57.452 32.000 16.51 0.00 40.36 1.52
3271 4101 7.407337 ACCGAGAATATTTCGAGCAATTTTAC 58.593 34.615 16.51 0.00 40.36 2.01
3272 4102 6.851330 CCGAGAATATTTCGAGCAATTTTACC 59.149 38.462 16.51 0.00 40.36 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 180 7.230712 TCCCTTCCTATGAACTTTGTTTTCTTC 59.769 37.037 0.00 0.00 0.00 2.87
194 195 7.625828 AGATTTTACGTTTTCCCTTCCTATG 57.374 36.000 0.00 0.00 0.00 2.23
503 531 0.888619 GAAACTAGCAAAGCCACCCC 59.111 55.000 0.00 0.00 0.00 4.95
531 559 1.133699 TCCCACATGCATGAATCTCCC 60.134 52.381 32.75 0.00 0.00 4.30
556 593 2.068519 TCACGTGCTCATGTTGATGAC 58.931 47.619 11.67 0.00 34.71 3.06
587 624 5.572252 ACTATTAGGTTCCTCGAGATAGGG 58.428 45.833 15.71 0.00 37.24 3.53
599 643 6.257849 TGCAATGTCGATTGACTATTAGGTTC 59.742 38.462 14.27 2.62 45.70 3.62
615 659 1.067060 TCCCGTCTCTATGCAATGTCG 59.933 52.381 0.00 0.00 0.00 4.35
619 663 1.967066 CTCCTCCCGTCTCTATGCAAT 59.033 52.381 0.00 0.00 0.00 3.56
633 677 2.200373 TAAAGCAAAGTGGCTCCTCC 57.800 50.000 0.00 0.00 45.07 4.30
634 678 3.758554 TCATTAAAGCAAAGTGGCTCCTC 59.241 43.478 0.00 0.00 45.07 3.71
635 679 3.760684 CTCATTAAAGCAAAGTGGCTCCT 59.239 43.478 0.00 0.00 45.07 3.69
715 919 3.408634 CTTTCGGAACCAACACATAGGT 58.591 45.455 0.00 0.00 40.61 3.08
721 931 1.682740 TTCCCTTTCGGAACCAACAC 58.317 50.000 0.00 0.00 46.27 3.32
808 1018 2.238521 GTGGGCTTGATGGAAAGAACA 58.761 47.619 0.00 0.00 0.00 3.18
830 1040 0.407528 TACTGAAAAGGGGGCATGCA 59.592 50.000 21.36 0.00 0.00 3.96
882 1092 5.278610 GGGTCTGTATATATACACACGCACA 60.279 44.000 28.05 10.47 41.38 4.57
883 1093 5.159209 GGGTCTGTATATATACACACGCAC 58.841 45.833 28.05 16.75 41.38 5.34
884 1094 4.828387 TGGGTCTGTATATATACACACGCA 59.172 41.667 30.07 30.07 45.45 5.24
885 1095 5.159209 GTGGGTCTGTATATATACACACGC 58.841 45.833 27.12 27.12 41.78 5.34
893 1103 6.183361 GGGAAAGTTGGTGGGTCTGTATATAT 60.183 42.308 0.00 0.00 0.00 0.86
913 1127 0.553862 TGGGCTATGGAAGGGGGAAA 60.554 55.000 0.00 0.00 0.00 3.13
939 1154 2.554462 GCTGATCGATGTGCTACTCCTA 59.446 50.000 0.54 0.00 0.00 2.94
942 1159 2.498807 TGCTGATCGATGTGCTACTC 57.501 50.000 0.54 0.00 0.00 2.59
1139 1368 2.607635 ACGTACATGCGCTGGATTTAAG 59.392 45.455 9.73 0.00 34.88 1.85
1375 1618 3.272551 AGGTAGGAGTGATTGAGGTACCT 59.727 47.826 16.26 16.26 35.10 3.08
1509 1752 2.284331 TCGCTAGGGGAGTGCCAA 60.284 61.111 1.97 0.00 35.48 4.52
1587 1830 1.462283 CCGATCACAGCAGTCTTGTTG 59.538 52.381 0.00 0.00 40.89 3.33
1599 1842 1.775385 TGTAGAGGATGCCGATCACA 58.225 50.000 0.00 0.00 0.00 3.58
1662 1905 2.968574 TGGCAGGAGATGGATTAGAGAC 59.031 50.000 0.00 0.00 0.00 3.36
1689 1937 5.767816 ACTCCGTGCAAATTAAAGAAAGT 57.232 34.783 0.00 0.00 0.00 2.66
1700 2073 3.690139 TGACAACTTTAACTCCGTGCAAA 59.310 39.130 0.00 0.00 0.00 3.68
1701 2074 3.271729 TGACAACTTTAACTCCGTGCAA 58.728 40.909 0.00 0.00 0.00 4.08
1702 2075 2.907634 TGACAACTTTAACTCCGTGCA 58.092 42.857 0.00 0.00 0.00 4.57
1733 2135 1.298014 GTAAGGCTCCAGCTGCACT 59.702 57.895 8.66 0.00 41.70 4.40
1769 2171 3.631087 CCATCTCCTCCTTCTCCTTGGTA 60.631 52.174 0.00 0.00 0.00 3.25
1877 2279 4.480480 GTCCAGATGACCCCCTCA 57.520 61.111 0.00 0.00 38.09 3.86
1934 2344 4.225942 AGAATCTGGGTCTAAATGTGCTCA 59.774 41.667 0.00 0.00 0.00 4.26
1937 2347 7.391148 TTTTAGAATCTGGGTCTAAATGTGC 57.609 36.000 7.29 0.00 43.57 4.57
1951 2361 8.749354 AGCAAATTTCCCGTAATTTTAGAATCT 58.251 29.630 0.00 0.00 35.98 2.40
1974 2631 3.300852 TTGTTCGTATGTCCGTAAGCA 57.699 42.857 0.00 0.00 0.00 3.91
1990 2647 6.016360 TGCATGTACTTTTGAGCAGTATTGTT 60.016 34.615 0.00 0.00 0.00 2.83
1991 2648 5.473162 TGCATGTACTTTTGAGCAGTATTGT 59.527 36.000 0.00 0.00 0.00 2.71
1994 2673 6.764308 AATGCATGTACTTTTGAGCAGTAT 57.236 33.333 0.00 0.00 35.26 2.12
1997 2676 5.389098 GCAAAATGCATGTACTTTTGAGCAG 60.389 40.000 21.01 1.12 44.26 4.24
2217 3017 3.760684 GTGATCATCAGGGCAGAAAAAGT 59.239 43.478 0.00 0.00 0.00 2.66
2277 3077 1.322442 AGGCTGCCTGAAGTTTGAAC 58.678 50.000 22.71 0.00 29.57 3.18
2290 3090 1.001860 GATGTCTATCCCTCAGGCTGC 59.998 57.143 10.34 0.00 0.00 5.25
2336 3140 7.535489 AGTCAAATTAAGGTACGTAATGAGC 57.465 36.000 0.00 0.00 41.79 4.26
2337 3141 7.903431 GCAAGTCAAATTAAGGTACGTAATGAG 59.097 37.037 0.00 0.04 41.79 2.90
2338 3142 7.604927 AGCAAGTCAAATTAAGGTACGTAATGA 59.395 33.333 0.00 0.00 41.79 2.57
2339 3143 7.748847 AGCAAGTCAAATTAAGGTACGTAATG 58.251 34.615 0.00 0.00 41.79 1.90
2400 3204 7.289326 ACTGAGGGCATGGGAAAATATATAT 57.711 36.000 0.00 0.00 0.00 0.86
2426 3230 0.385029 TCTTCGTCGTGGTTTCCGAA 59.615 50.000 0.00 0.00 35.89 4.30
2428 3232 0.505655 GTTCTTCGTCGTGGTTTCCG 59.494 55.000 0.00 0.00 0.00 4.30
2440 3248 3.871006 TCCATCGAATCAATGGTTCTTCG 59.129 43.478 4.61 3.78 43.52 3.79
2486 3301 3.704566 ACTATGAACATCTCCGCTTGGTA 59.295 43.478 0.00 0.00 0.00 3.25
2504 3320 2.450609 AACAAACGTGCCGAGACTAT 57.549 45.000 0.00 0.00 0.00 2.12
2518 3334 9.672086 CTTCGACTTTACAATGGAATTAACAAA 57.328 29.630 0.00 0.00 32.46 2.83
2553 3371 7.706179 CCGCTTGAAATTATTTATTGGACACAT 59.294 33.333 0.00 0.00 0.00 3.21
2555 3373 7.254852 TCCGCTTGAAATTATTTATTGGACAC 58.745 34.615 0.00 0.00 0.00 3.67
2556 3374 7.338196 TCTCCGCTTGAAATTATTTATTGGACA 59.662 33.333 0.00 0.00 0.00 4.02
2557 3375 7.703328 TCTCCGCTTGAAATTATTTATTGGAC 58.297 34.615 0.00 0.00 0.00 4.02
2558 3376 7.873719 TCTCCGCTTGAAATTATTTATTGGA 57.126 32.000 0.00 0.00 0.00 3.53
2559 3377 8.137437 ACATCTCCGCTTGAAATTATTTATTGG 58.863 33.333 0.00 0.00 0.00 3.16
2560 3378 9.520204 AACATCTCCGCTTGAAATTATTTATTG 57.480 29.630 0.00 0.00 0.00 1.90
2561 3379 9.736023 GAACATCTCCGCTTGAAATTATTTATT 57.264 29.630 0.00 0.00 0.00 1.40
2562 3380 8.902806 TGAACATCTCCGCTTGAAATTATTTAT 58.097 29.630 0.00 0.00 0.00 1.40
2563 3381 8.275015 TGAACATCTCCGCTTGAAATTATTTA 57.725 30.769 0.00 0.00 0.00 1.40
2564 3382 7.156876 TGAACATCTCCGCTTGAAATTATTT 57.843 32.000 0.00 0.00 0.00 1.40
2565 3383 6.757897 TGAACATCTCCGCTTGAAATTATT 57.242 33.333 0.00 0.00 0.00 1.40
2566 3384 6.949352 ATGAACATCTCCGCTTGAAATTAT 57.051 33.333 0.00 0.00 0.00 1.28
2567 3385 7.047891 ACTATGAACATCTCCGCTTGAAATTA 58.952 34.615 0.00 0.00 0.00 1.40
2568 3386 5.882557 ACTATGAACATCTCCGCTTGAAATT 59.117 36.000 0.00 0.00 0.00 1.82
2569 3387 5.431765 ACTATGAACATCTCCGCTTGAAAT 58.568 37.500 0.00 0.00 0.00 2.17
2570 3388 4.832248 ACTATGAACATCTCCGCTTGAAA 58.168 39.130 0.00 0.00 0.00 2.69
2571 3389 4.433615 GACTATGAACATCTCCGCTTGAA 58.566 43.478 0.00 0.00 0.00 2.69
2572 3390 3.489229 CGACTATGAACATCTCCGCTTGA 60.489 47.826 0.00 0.00 0.00 3.02
2573 3391 2.791560 CGACTATGAACATCTCCGCTTG 59.208 50.000 0.00 0.00 0.00 4.01
2574 3392 2.427453 ACGACTATGAACATCTCCGCTT 59.573 45.455 0.00 0.00 0.00 4.68
2575 3393 2.025155 ACGACTATGAACATCTCCGCT 58.975 47.619 0.00 0.00 0.00 5.52
2576 3394 2.493713 ACGACTATGAACATCTCCGC 57.506 50.000 0.00 0.00 0.00 5.54
2577 3395 3.770666 ACAACGACTATGAACATCTCCG 58.229 45.455 0.00 0.00 0.00 4.63
2578 3396 4.929808 ACAACAACGACTATGAACATCTCC 59.070 41.667 0.00 0.00 0.00 3.71
2579 3397 6.467723 AACAACAACGACTATGAACATCTC 57.532 37.500 0.00 0.00 0.00 2.75
2580 3398 7.152645 ACTAACAACAACGACTATGAACATCT 58.847 34.615 0.00 0.00 0.00 2.90
2581 3399 7.347508 ACTAACAACAACGACTATGAACATC 57.652 36.000 0.00 0.00 0.00 3.06
2582 3400 8.997621 ATACTAACAACAACGACTATGAACAT 57.002 30.769 0.00 0.00 0.00 2.71
2583 3401 8.301720 AGATACTAACAACAACGACTATGAACA 58.698 33.333 0.00 0.00 0.00 3.18
2584 3402 8.684973 AGATACTAACAACAACGACTATGAAC 57.315 34.615 0.00 0.00 0.00 3.18
2585 3403 9.350357 GAAGATACTAACAACAACGACTATGAA 57.650 33.333 0.00 0.00 0.00 2.57
2586 3404 8.517056 TGAAGATACTAACAACAACGACTATGA 58.483 33.333 0.00 0.00 0.00 2.15
2587 3405 8.683550 TGAAGATACTAACAACAACGACTATG 57.316 34.615 0.00 0.00 0.00 2.23
2588 3406 9.871238 ATTGAAGATACTAACAACAACGACTAT 57.129 29.630 0.00 0.00 0.00 2.12
2590 3408 9.701098 TTATTGAAGATACTAACAACAACGACT 57.299 29.630 0.00 0.00 0.00 4.18
2620 3438 6.037500 CGTAGATTGGACACATGTCATCAAAT 59.962 38.462 13.77 8.43 46.47 2.32
2658 3479 8.979817 TTGTTGAAACAAAAAGAAAGAAAACG 57.020 26.923 6.15 0.00 45.17 3.60
2672 3496 5.054390 AGAGACGCTTTTTGTTGAAACAA 57.946 34.783 4.52 4.52 46.35 2.83
2690 3514 1.106944 TGGCGCATCCGTGATAGAGA 61.107 55.000 10.83 0.00 37.80 3.10
2694 3518 2.289382 ACAATATGGCGCATCCGTGATA 60.289 45.455 10.83 0.00 37.80 2.15
2751 3579 6.097696 TGGATTTGATCTGATGTGCAATGATT 59.902 34.615 0.00 0.00 0.00 2.57
2798 3627 8.802267 TGAAAAAGGGACTGTAATTAAAGATGG 58.198 33.333 9.75 0.00 40.86 3.51
2895 3724 9.834628 GGAAGACGAACAAATATAGATCTCTAG 57.165 37.037 0.00 0.00 0.00 2.43
2898 3727 9.187455 GAAGGAAGACGAACAAATATAGATCTC 57.813 37.037 0.00 0.00 0.00 2.75
2944 3774 2.358737 AACTGGGCGTGCTAGCAC 60.359 61.111 33.47 33.47 43.01 4.40
2992 3822 8.213518 TGAGGAAAATGTGAATGATACTAAGC 57.786 34.615 0.00 0.00 0.00 3.09
3049 3879 0.657312 CAGACGTGCAAACTGCTTGA 59.343 50.000 0.00 0.00 45.31 3.02
3082 3912 1.941812 CTCGGCATTATTGGTCGGC 59.058 57.895 0.00 0.00 33.45 5.54
3107 3937 1.016130 GTCATGGACGGTCTGCAGTG 61.016 60.000 14.67 7.69 0.00 3.66
3116 3946 0.531532 GATGCTCCTGTCATGGACGG 60.532 60.000 0.00 0.00 38.54 4.79
3133 3963 2.108425 TCTCGTACAGCCTATGGGAGAT 59.892 50.000 0.00 0.00 32.38 2.75
3143 3973 4.238514 CCTTATTGCTATCTCGTACAGCC 58.761 47.826 0.00 0.00 34.31 4.85
3144 3974 4.872664 ACCTTATTGCTATCTCGTACAGC 58.127 43.478 0.00 0.00 35.82 4.40
3145 3975 7.254455 CCAAAACCTTATTGCTATCTCGTACAG 60.254 40.741 0.00 0.00 0.00 2.74
3171 4001 3.592898 AAAATTGCCTCATTCGGGAAC 57.407 42.857 0.00 0.00 37.20 3.62
3172 4002 3.445805 GGTAAAATTGCCTCATTCGGGAA 59.554 43.478 0.00 0.00 38.80 3.97
3173 4003 3.020984 GGTAAAATTGCCTCATTCGGGA 58.979 45.455 0.00 0.00 0.00 5.14
3174 4004 2.223479 CGGTAAAATTGCCTCATTCGGG 60.223 50.000 0.00 0.00 0.00 5.14
3175 4005 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
3176 4006 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
3177 4007 3.066760 CCCTCGGTAAAATTGCCTCATTC 59.933 47.826 0.00 0.00 0.00 2.67
3178 4008 3.023832 CCCTCGGTAAAATTGCCTCATT 58.976 45.455 0.00 0.00 0.00 2.57
3179 4009 2.654863 CCCTCGGTAAAATTGCCTCAT 58.345 47.619 0.00 0.00 0.00 2.90
3180 4010 1.340600 CCCCTCGGTAAAATTGCCTCA 60.341 52.381 0.00 0.00 0.00 3.86
3181 4011 1.064979 TCCCCTCGGTAAAATTGCCTC 60.065 52.381 0.00 0.00 0.00 4.70
3182 4012 0.996583 TCCCCTCGGTAAAATTGCCT 59.003 50.000 0.00 0.00 0.00 4.75
3183 4013 1.100510 GTCCCCTCGGTAAAATTGCC 58.899 55.000 0.00 0.00 0.00 4.52
3184 4014 1.743394 CAGTCCCCTCGGTAAAATTGC 59.257 52.381 0.00 0.00 0.00 3.56
3185 4015 2.290705 ACCAGTCCCCTCGGTAAAATTG 60.291 50.000 0.00 0.00 0.00 2.32
3186 4016 1.990327 ACCAGTCCCCTCGGTAAAATT 59.010 47.619 0.00 0.00 0.00 1.82
3187 4017 1.665137 ACCAGTCCCCTCGGTAAAAT 58.335 50.000 0.00 0.00 0.00 1.82
3188 4018 2.323999 TACCAGTCCCCTCGGTAAAA 57.676 50.000 0.00 0.00 32.35 1.52
3189 4019 2.323999 TTACCAGTCCCCTCGGTAAA 57.676 50.000 0.00 0.00 41.22 2.01
3190 4020 2.323999 TTTACCAGTCCCCTCGGTAA 57.676 50.000 0.00 0.00 42.18 2.85
3191 4021 2.112998 CATTTACCAGTCCCCTCGGTA 58.887 52.381 0.00 0.00 34.12 4.02
3192 4022 0.909623 CATTTACCAGTCCCCTCGGT 59.090 55.000 0.00 0.00 36.79 4.69
3193 4023 0.909623 ACATTTACCAGTCCCCTCGG 59.090 55.000 0.00 0.00 0.00 4.63
3194 4024 1.406887 CCACATTTACCAGTCCCCTCG 60.407 57.143 0.00 0.00 0.00 4.63
3195 4025 1.633945 ACCACATTTACCAGTCCCCTC 59.366 52.381 0.00 0.00 0.00 4.30
3196 4026 1.755200 ACCACATTTACCAGTCCCCT 58.245 50.000 0.00 0.00 0.00 4.79
3197 4027 2.597578 AACCACATTTACCAGTCCCC 57.402 50.000 0.00 0.00 0.00 4.81
3212 4042 2.692024 TCCTGGTAACTGTGGTAACCA 58.308 47.619 0.00 0.00 39.66 3.67
3213 4043 3.775261 TTCCTGGTAACTGTGGTAACC 57.225 47.619 0.00 0.00 37.61 2.85
3214 4044 5.645067 GGTATTTCCTGGTAACTGTGGTAAC 59.355 44.000 0.00 0.00 37.61 2.50
3215 4045 5.569227 CGGTATTTCCTGGTAACTGTGGTAA 60.569 44.000 0.00 0.00 37.61 2.85
3216 4046 4.081531 CGGTATTTCCTGGTAACTGTGGTA 60.082 45.833 0.00 0.00 37.61 3.25
3217 4047 3.307199 CGGTATTTCCTGGTAACTGTGGT 60.307 47.826 0.00 0.00 37.61 4.16
3218 4048 3.055675 TCGGTATTTCCTGGTAACTGTGG 60.056 47.826 0.00 0.00 37.61 4.17
3219 4049 4.081862 TCTCGGTATTTCCTGGTAACTGTG 60.082 45.833 0.00 0.00 37.61 3.66
3220 4050 4.091549 TCTCGGTATTTCCTGGTAACTGT 58.908 43.478 0.00 0.00 37.61 3.55
3221 4051 4.730949 TCTCGGTATTTCCTGGTAACTG 57.269 45.455 0.00 0.00 37.61 3.16
3222 4052 5.750352 TTTCTCGGTATTTCCTGGTAACT 57.250 39.130 0.00 0.00 37.61 2.24
3223 4053 6.481313 GGTATTTCTCGGTATTTCCTGGTAAC 59.519 42.308 0.00 0.00 0.00 2.50
3224 4054 6.585416 GGTATTTCTCGGTATTTCCTGGTAA 58.415 40.000 0.00 0.00 0.00 2.85
3225 4055 5.221303 CGGTATTTCTCGGTATTTCCTGGTA 60.221 44.000 0.00 0.00 0.00 3.25
3226 4056 4.442472 CGGTATTTCTCGGTATTTCCTGGT 60.442 45.833 0.00 0.00 0.00 4.00
3227 4057 4.056050 CGGTATTTCTCGGTATTTCCTGG 58.944 47.826 0.00 0.00 0.00 4.45
3228 4058 4.940463 TCGGTATTTCTCGGTATTTCCTG 58.060 43.478 0.00 0.00 0.00 3.86
3229 4059 4.891756 TCTCGGTATTTCTCGGTATTTCCT 59.108 41.667 0.00 0.00 0.00 3.36
3230 4060 5.192327 TCTCGGTATTTCTCGGTATTTCC 57.808 43.478 0.00 0.00 0.00 3.13
3231 4061 8.983307 ATATTCTCGGTATTTCTCGGTATTTC 57.017 34.615 0.00 0.00 0.00 2.17
3232 4062 9.774413 AAATATTCTCGGTATTTCTCGGTATTT 57.226 29.630 0.00 0.00 28.29 1.40
3233 4063 9.420551 GAAATATTCTCGGTATTTCTCGGTATT 57.579 33.333 9.99 0.00 41.76 1.89
3234 4064 7.754027 CGAAATATTCTCGGTATTTCTCGGTAT 59.246 37.037 13.53 0.00 42.35 2.73
3235 4065 7.041167 TCGAAATATTCTCGGTATTTCTCGGTA 60.041 37.037 15.30 0.00 42.35 4.02
3236 4066 5.919141 CGAAATATTCTCGGTATTTCTCGGT 59.081 40.000 13.53 0.00 42.35 4.69
3237 4067 6.147581 TCGAAATATTCTCGGTATTTCTCGG 58.852 40.000 15.30 3.07 42.35 4.63
3238 4068 6.183359 GCTCGAAATATTCTCGGTATTTCTCG 60.183 42.308 15.30 6.03 42.35 4.04
3239 4069 6.641314 TGCTCGAAATATTCTCGGTATTTCTC 59.359 38.462 15.30 6.38 42.35 2.87
3240 4070 6.513180 TGCTCGAAATATTCTCGGTATTTCT 58.487 36.000 15.30 0.00 42.35 2.52
3241 4071 6.764877 TGCTCGAAATATTCTCGGTATTTC 57.235 37.500 15.30 8.01 41.66 2.17
3242 4072 7.730364 ATTGCTCGAAATATTCTCGGTATTT 57.270 32.000 15.30 0.00 36.93 1.40
3243 4073 7.730364 AATTGCTCGAAATATTCTCGGTATT 57.270 32.000 15.30 9.66 36.93 1.89
3244 4074 7.730364 AAATTGCTCGAAATATTCTCGGTAT 57.270 32.000 15.30 6.10 36.93 2.73
3245 4075 7.548196 AAAATTGCTCGAAATATTCTCGGTA 57.452 32.000 15.30 7.27 36.93 4.02
3246 4076 6.436843 AAAATTGCTCGAAATATTCTCGGT 57.563 33.333 15.30 0.00 36.93 4.69
3247 4077 6.851330 GGTAAAATTGCTCGAAATATTCTCGG 59.149 38.462 15.30 9.94 36.93 4.63
3248 4078 7.822575 GGTAAAATTGCTCGAAATATTCTCG 57.177 36.000 11.44 11.44 37.66 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.