Multiple sequence alignment - TraesCS7A01G537200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G537200 chr7A 100.000 3919 0 0 1 3919 714659625 714663543 0.000000e+00 7238
1 TraesCS7A01G537200 chr7B 90.200 2347 122 48 730 3005 716025265 716022956 0.000000e+00 2961
2 TraesCS7A01G537200 chr7B 84.478 335 47 4 3587 3919 532447357 532447688 3.780000e-85 326
3 TraesCS7A01G537200 chr7B 81.472 394 23 15 29 396 716030984 716030615 1.070000e-70 278
4 TraesCS7A01G537200 chr7B 88.889 81 8 1 847 926 716031228 716031148 8.960000e-17 99
5 TraesCS7A01G537200 chr7D 89.258 2439 119 60 670 3007 620258759 620256363 0.000000e+00 2920
6 TraesCS7A01G537200 chr7D 92.577 485 21 9 3091 3573 620256337 620255866 0.000000e+00 682
7 TraesCS7A01G537200 chr7D 88.706 425 39 5 3495 3919 620255887 620255472 9.710000e-141 510
8 TraesCS7A01G537200 chr7D 82.776 598 36 31 28 600 620259327 620258772 4.580000e-129 472
9 TraesCS7A01G537200 chr2D 86.176 340 46 1 3580 3919 577787151 577787489 2.230000e-97 366
10 TraesCS7A01G537200 chr2D 85.345 116 11 4 3285 3400 629379227 629379336 8.900000e-22 115
11 TraesCS7A01G537200 chr6D 85.337 341 49 1 3580 3919 48891341 48891681 6.230000e-93 351
12 TraesCS7A01G537200 chr1A 85.294 340 49 1 3580 3919 364030565 364030903 2.240000e-92 350
13 TraesCS7A01G537200 chr1A 83.333 342 53 4 3580 3919 297734881 297735220 2.940000e-81 313
14 TraesCS7A01G537200 chr5D 85.337 341 41 6 3580 3919 379779657 379779325 1.040000e-90 344
15 TraesCS7A01G537200 chr5A 85.933 327 39 4 3580 3905 480272363 480272043 3.750000e-90 342
16 TraesCS7A01G537200 chr5A 92.632 95 7 0 1317 1411 544568346 544568252 1.900000e-28 137
17 TraesCS7A01G537200 chr2B 85.241 332 45 3 3590 3919 485886748 485887077 4.850000e-89 339
18 TraesCS7A01G537200 chr5B 92.632 95 7 0 1317 1411 517868648 517868554 1.900000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G537200 chr7A 714659625 714663543 3918 False 7238 7238 100.00000 1 3919 1 chr7A.!!$F1 3918
1 TraesCS7A01G537200 chr7B 716022956 716025265 2309 True 2961 2961 90.20000 730 3005 1 chr7B.!!$R1 2275
2 TraesCS7A01G537200 chr7D 620255472 620259327 3855 True 1146 2920 88.32925 28 3919 4 chr7D.!!$R1 3891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 647 0.038021 TTTGTATGCCCAGCAGAGCA 59.962 50.000 0.0 0.0 43.65 4.26 F
722 761 0.251742 CATCCCCAAGCCACAAAGGA 60.252 55.000 0.0 0.0 41.22 3.36 F
1937 2009 1.068055 CCGGAACACGCAGTAAGTAGT 60.068 52.381 0.0 0.0 41.61 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2074 1.000274 CCCTTTTGACTTTTCGGCCTG 60.000 52.381 0.0 0.0 0.0 4.85 R
1996 2076 1.037493 ACCCTTTTGACTTTTCGGCC 58.963 50.000 0.0 0.0 0.0 6.13 R
3876 4076 0.109342 CTGGTTGCCAAGGTGAGTCT 59.891 55.000 0.0 0.0 30.8 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.818141 ATATGCACTACATTATGTGAGTACAC 57.182 34.615 8.26 0.00 42.30 2.90
53 54 5.344743 ACACAGGTTCCATCTATGTACAG 57.655 43.478 0.33 0.00 0.00 2.74
71 75 8.888579 ATGTACAGTATTGCCATACTTTAGAC 57.111 34.615 7.70 5.00 42.73 2.59
72 76 8.074613 TGTACAGTATTGCCATACTTTAGACT 57.925 34.615 7.70 0.00 42.73 3.24
74 78 9.680315 GTACAGTATTGCCATACTTTAGACTAG 57.320 37.037 7.70 0.00 42.73 2.57
75 79 8.534954 ACAGTATTGCCATACTTTAGACTAGA 57.465 34.615 7.70 0.00 42.73 2.43
76 80 8.634444 ACAGTATTGCCATACTTTAGACTAGAG 58.366 37.037 7.70 0.00 42.73 2.43
77 81 8.085296 CAGTATTGCCATACTTTAGACTAGAGG 58.915 40.741 7.70 0.00 42.73 3.69
78 82 5.871396 TTGCCATACTTTAGACTAGAGGG 57.129 43.478 0.00 0.00 0.00 4.30
79 83 4.223953 TGCCATACTTTAGACTAGAGGGG 58.776 47.826 0.00 4.67 0.00 4.79
80 84 3.579151 GCCATACTTTAGACTAGAGGGGG 59.421 52.174 0.00 4.37 0.00 5.40
81 85 3.579151 CCATACTTTAGACTAGAGGGGGC 59.421 52.174 0.00 0.00 0.00 5.80
82 86 4.484912 CATACTTTAGACTAGAGGGGGCT 58.515 47.826 0.00 0.00 0.00 5.19
83 87 3.493475 ACTTTAGACTAGAGGGGGCTT 57.507 47.619 0.00 0.00 0.00 4.35
84 88 3.376636 ACTTTAGACTAGAGGGGGCTTC 58.623 50.000 0.00 0.00 0.00 3.86
85 89 3.013073 ACTTTAGACTAGAGGGGGCTTCT 59.987 47.826 0.00 0.00 0.00 2.85
92 96 3.593780 ACTAGAGGGGGCTTCTTTTTCAT 59.406 43.478 0.00 0.00 0.00 2.57
101 105 6.950619 GGGGGCTTCTTTTTCATAGATCATAT 59.049 38.462 0.00 0.00 0.00 1.78
115 119 9.402320 TCATAGATCATATTACTCTCTAGCACC 57.598 37.037 0.00 0.00 0.00 5.01
116 120 9.407380 CATAGATCATATTACTCTCTAGCACCT 57.593 37.037 0.00 0.00 0.00 4.00
118 122 8.801882 AGATCATATTACTCTCTAGCACCTAC 57.198 38.462 0.00 0.00 0.00 3.18
119 123 8.611257 AGATCATATTACTCTCTAGCACCTACT 58.389 37.037 0.00 0.00 0.00 2.57
126 130 0.178998 TCTAGCACCTACTAGGCCGG 60.179 60.000 0.00 0.00 39.63 6.13
161 167 0.964860 TGGCCGGTGAATGTCCATTG 60.965 55.000 1.90 0.00 0.00 2.82
168 174 2.440409 GTGAATGTCCATTGTCCTGCT 58.560 47.619 0.00 0.00 0.00 4.24
169 175 2.421424 GTGAATGTCCATTGTCCTGCTC 59.579 50.000 0.00 0.00 0.00 4.26
170 176 1.667724 GAATGTCCATTGTCCTGCTCG 59.332 52.381 0.00 0.00 0.00 5.03
171 177 0.745845 ATGTCCATTGTCCTGCTCGC 60.746 55.000 0.00 0.00 0.00 5.03
172 178 1.375908 GTCCATTGTCCTGCTCGCA 60.376 57.895 0.00 0.00 0.00 5.10
182 188 2.796425 CTGCTCGCACTGCATCGAC 61.796 63.158 1.11 0.00 39.86 4.20
185 191 2.125952 TCGCACTGCATCGACCAG 60.126 61.111 12.07 12.07 36.41 4.00
189 195 1.893062 CACTGCATCGACCAGGAGA 59.107 57.895 16.55 0.00 34.65 3.71
191 197 0.613292 ACTGCATCGACCAGGAGACT 60.613 55.000 16.55 0.00 46.44 3.24
231 237 5.220739 CCATTCAACAAGCAGCTGTATACTC 60.221 44.000 16.64 0.00 0.00 2.59
237 243 3.567576 AGCAGCTGTATACTCTATGCG 57.432 47.619 16.64 0.00 37.28 4.73
238 244 1.989165 GCAGCTGTATACTCTATGCGC 59.011 52.381 16.64 0.00 0.00 6.09
242 248 5.033507 CAGCTGTATACTCTATGCGCATAG 58.966 45.833 39.64 39.64 41.58 2.23
244 250 5.184096 AGCTGTATACTCTATGCGCATAGTT 59.816 40.000 41.40 33.43 41.12 2.24
245 251 6.374613 AGCTGTATACTCTATGCGCATAGTTA 59.625 38.462 41.40 34.14 41.12 2.24
246 252 6.469595 GCTGTATACTCTATGCGCATAGTTAC 59.530 42.308 41.40 34.43 41.12 2.50
247 253 7.443259 TGTATACTCTATGCGCATAGTTACA 57.557 36.000 41.40 35.80 41.12 2.41
248 254 8.051901 TGTATACTCTATGCGCATAGTTACAT 57.948 34.615 41.40 32.10 41.12 2.29
278 300 5.567138 AGATACTGCACTATTTTGTTGGC 57.433 39.130 0.00 0.00 0.00 4.52
290 312 3.502123 TTTGTTGGCTTGCTACCTAGT 57.498 42.857 0.00 0.00 0.00 2.57
291 313 4.627284 TTTGTTGGCTTGCTACCTAGTA 57.373 40.909 0.00 0.00 0.00 1.82
292 314 3.887621 TGTTGGCTTGCTACCTAGTAG 57.112 47.619 0.00 0.00 38.97 2.57
314 336 1.448922 CGGGCCTCGTTGTTTTCCAA 61.449 55.000 0.84 0.00 0.00 3.53
325 347 2.993937 TGTTTTCCAAGGTCAACTCGT 58.006 42.857 5.28 0.00 0.00 4.18
362 389 6.183360 CGATCAAATCATTTCTTTTTGGCTGG 60.183 38.462 0.00 0.00 32.52 4.85
366 393 4.335400 TCATTTCTTTTTGGCTGGAACC 57.665 40.909 0.00 0.00 0.00 3.62
374 401 2.079088 TTGGCTGGAACCAGGATGCA 62.079 55.000 20.38 0.00 43.77 3.96
375 402 2.048603 GGCTGGAACCAGGATGCAC 61.049 63.158 20.38 4.54 43.77 4.57
376 403 2.048603 GCTGGAACCAGGATGCACC 61.049 63.158 20.38 0.00 43.77 5.01
377 404 1.746615 CTGGAACCAGGATGCACCG 60.747 63.158 12.54 0.00 44.74 4.94
380 407 0.743345 GGAACCAGGATGCACCGTAC 60.743 60.000 0.00 0.00 44.74 3.67
381 408 0.743345 GAACCAGGATGCACCGTACC 60.743 60.000 0.00 0.00 44.74 3.34
382 409 1.198759 AACCAGGATGCACCGTACCT 61.199 55.000 0.00 0.00 44.74 3.08
383 410 0.324923 ACCAGGATGCACCGTACCTA 60.325 55.000 0.00 0.00 44.74 3.08
384 411 0.104304 CCAGGATGCACCGTACCTAC 59.896 60.000 0.00 0.00 44.74 3.18
385 412 0.821517 CAGGATGCACCGTACCTACA 59.178 55.000 0.00 0.00 44.74 2.74
386 413 1.412710 CAGGATGCACCGTACCTACAT 59.587 52.381 0.00 0.00 44.74 2.29
387 414 2.626266 CAGGATGCACCGTACCTACATA 59.374 50.000 0.00 0.00 44.74 2.29
388 415 3.258372 CAGGATGCACCGTACCTACATAT 59.742 47.826 0.00 0.00 44.74 1.78
397 424 3.757493 CCGTACCTACATATCCTCTGTCC 59.243 52.174 0.00 0.00 0.00 4.02
400 427 3.223435 ACCTACATATCCTCTGTCCGTG 58.777 50.000 0.00 0.00 0.00 4.94
406 433 1.194781 ATCCTCTGTCCGTGCAACCT 61.195 55.000 0.00 0.00 0.00 3.50
415 442 0.667993 CCGTGCAACCTGTTGACATT 59.332 50.000 13.94 0.00 42.93 2.71
427 454 9.849307 CAACCTGTTGACATTCGTACACGATTC 62.849 44.444 5.15 3.86 44.39 2.52
439 466 7.260558 TCGTACACGATTCATCTTTCTATCT 57.739 36.000 0.00 0.00 44.22 1.98
440 467 8.374327 TCGTACACGATTCATCTTTCTATCTA 57.626 34.615 0.00 0.00 44.22 1.98
441 468 8.281194 TCGTACACGATTCATCTTTCTATCTAC 58.719 37.037 0.00 0.00 44.22 2.59
442 469 8.283992 CGTACACGATTCATCTTTCTATCTACT 58.716 37.037 0.00 0.00 43.02 2.57
443 470 9.388346 GTACACGATTCATCTTTCTATCTACTG 57.612 37.037 0.00 0.00 0.00 2.74
444 471 8.001881 ACACGATTCATCTTTCTATCTACTGT 57.998 34.615 0.00 0.00 0.00 3.55
445 472 9.121658 ACACGATTCATCTTTCTATCTACTGTA 57.878 33.333 0.00 0.00 0.00 2.74
473 500 2.614259 TCCTCTCCCATGGCTAGATTC 58.386 52.381 6.09 0.00 0.00 2.52
474 501 1.274728 CCTCTCCCATGGCTAGATTCG 59.725 57.143 6.09 0.13 0.00 3.34
487 515 2.540265 AGATTCGCTCTGCCCATTAG 57.460 50.000 0.00 0.00 31.12 1.73
488 516 1.765314 AGATTCGCTCTGCCCATTAGT 59.235 47.619 0.00 0.00 31.12 2.24
489 517 1.869767 GATTCGCTCTGCCCATTAGTG 59.130 52.381 0.00 0.00 0.00 2.74
490 518 0.744414 TTCGCTCTGCCCATTAGTGC 60.744 55.000 0.00 0.00 0.00 4.40
491 519 1.450134 CGCTCTGCCCATTAGTGCA 60.450 57.895 0.00 0.00 35.11 4.57
496 524 3.397482 CTCTGCCCATTAGTGCATACTC 58.603 50.000 0.00 0.00 38.36 2.59
497 525 2.138320 CTGCCCATTAGTGCATACTCG 58.862 52.381 0.00 0.00 38.36 4.18
498 526 1.484653 TGCCCATTAGTGCATACTCGT 59.515 47.619 0.00 0.00 38.36 4.18
499 527 2.696187 TGCCCATTAGTGCATACTCGTA 59.304 45.455 0.00 0.00 38.36 3.43
501 529 3.243771 GCCCATTAGTGCATACTCGTAGT 60.244 47.826 0.00 0.00 38.36 2.73
502 530 4.022589 GCCCATTAGTGCATACTCGTAGTA 60.023 45.833 0.00 0.00 38.36 1.82
503 531 5.458891 CCCATTAGTGCATACTCGTAGTAC 58.541 45.833 0.00 0.00 38.36 2.73
504 532 5.145059 CCATTAGTGCATACTCGTAGTACG 58.855 45.833 16.65 16.65 44.19 3.67
505 533 5.277683 CCATTAGTGCATACTCGTAGTACGT 60.278 44.000 21.38 6.81 43.14 3.57
506 534 6.073602 CCATTAGTGCATACTCGTAGTACGTA 60.074 42.308 21.38 8.84 43.14 3.57
507 535 4.785669 AGTGCATACTCGTAGTACGTAC 57.214 45.455 21.38 18.10 43.14 3.67
520 548 4.121227 CGTACGTGTGCAGCTGCG 62.121 66.667 32.11 20.61 45.83 5.18
529 557 4.077188 GCAGCTGCGTTCCACGAC 62.077 66.667 25.23 0.00 46.05 4.34
559 587 6.700960 TCACAACAAATTTACATTGCCTCTTG 59.299 34.615 8.26 0.00 0.00 3.02
564 592 3.921119 TTTACATTGCCTCTTGTGCAG 57.079 42.857 0.00 0.00 40.35 4.41
578 606 1.202245 TGTGCAGAACAAAGAAACGGC 60.202 47.619 0.00 0.00 35.24 5.68
600 628 5.466819 GCCCTGCTACGTTTTTCTTTAAAT 58.533 37.500 0.00 0.00 0.00 1.40
601 629 5.924254 GCCCTGCTACGTTTTTCTTTAAATT 59.076 36.000 0.00 0.00 0.00 1.82
602 630 6.422701 GCCCTGCTACGTTTTTCTTTAAATTT 59.577 34.615 0.00 0.00 0.00 1.82
603 631 7.568679 GCCCTGCTACGTTTTTCTTTAAATTTG 60.569 37.037 0.00 0.00 0.00 2.32
604 632 7.436970 CCCTGCTACGTTTTTCTTTAAATTTGT 59.563 33.333 0.00 0.00 0.00 2.83
605 633 9.453325 CCTGCTACGTTTTTCTTTAAATTTGTA 57.547 29.630 0.00 0.00 0.00 2.41
610 638 8.078959 ACGTTTTTCTTTAAATTTGTATGCCC 57.921 30.769 0.00 0.00 0.00 5.36
611 639 7.711339 ACGTTTTTCTTTAAATTTGTATGCCCA 59.289 29.630 0.00 0.00 0.00 5.36
612 640 8.220434 CGTTTTTCTTTAAATTTGTATGCCCAG 58.780 33.333 0.00 0.00 0.00 4.45
613 641 7.665561 TTTTCTTTAAATTTGTATGCCCAGC 57.334 32.000 0.00 0.00 0.00 4.85
614 642 5.991933 TCTTTAAATTTGTATGCCCAGCA 57.008 34.783 0.00 0.00 44.86 4.41
615 643 5.964758 TCTTTAAATTTGTATGCCCAGCAG 58.035 37.500 0.00 0.00 43.65 4.24
616 644 5.714333 TCTTTAAATTTGTATGCCCAGCAGA 59.286 36.000 0.00 0.00 43.65 4.26
617 645 5.581126 TTAAATTTGTATGCCCAGCAGAG 57.419 39.130 0.00 0.00 43.65 3.35
618 646 1.396653 ATTTGTATGCCCAGCAGAGC 58.603 50.000 0.00 0.00 43.65 4.09
619 647 0.038021 TTTGTATGCCCAGCAGAGCA 59.962 50.000 0.00 0.00 43.65 4.26
620 648 0.677731 TTGTATGCCCAGCAGAGCAC 60.678 55.000 0.00 0.00 43.65 4.40
621 649 1.821332 GTATGCCCAGCAGAGCACC 60.821 63.158 0.00 0.00 43.65 5.01
622 650 3.390183 TATGCCCAGCAGAGCACCG 62.390 63.158 0.00 0.00 43.65 4.94
626 654 4.020617 CCAGCAGAGCACCGGGAA 62.021 66.667 6.32 0.00 0.00 3.97
627 655 2.435586 CAGCAGAGCACCGGGAAG 60.436 66.667 6.32 0.00 0.00 3.46
638 666 2.928416 CCGGGAAGGTTCAGTCAAC 58.072 57.895 0.00 0.00 34.51 3.18
639 667 0.396811 CCGGGAAGGTTCAGTCAACT 59.603 55.000 0.00 0.00 35.06 3.16
640 668 1.608283 CCGGGAAGGTTCAGTCAACTC 60.608 57.143 0.00 0.00 35.06 3.01
641 669 1.344763 CGGGAAGGTTCAGTCAACTCT 59.655 52.381 0.00 0.00 35.06 3.24
642 670 2.224305 CGGGAAGGTTCAGTCAACTCTT 60.224 50.000 0.00 0.00 35.06 2.85
643 671 3.403968 GGGAAGGTTCAGTCAACTCTTC 58.596 50.000 0.00 0.00 39.35 2.87
644 672 3.403968 GGAAGGTTCAGTCAACTCTTCC 58.596 50.000 10.02 10.02 45.40 3.46
645 673 4.073293 GAAGGTTCAGTCAACTCTTCCA 57.927 45.455 0.00 0.00 36.86 3.53
646 674 4.451900 GAAGGTTCAGTCAACTCTTCCAA 58.548 43.478 0.00 0.00 36.86 3.53
647 675 3.809905 AGGTTCAGTCAACTCTTCCAAC 58.190 45.455 0.00 0.00 35.06 3.77
648 676 2.879026 GGTTCAGTCAACTCTTCCAACC 59.121 50.000 0.00 0.00 35.06 3.77
649 677 3.541632 GTTCAGTCAACTCTTCCAACCA 58.458 45.455 0.00 0.00 31.50 3.67
650 678 3.194005 TCAGTCAACTCTTCCAACCAC 57.806 47.619 0.00 0.00 0.00 4.16
651 679 1.867233 CAGTCAACTCTTCCAACCACG 59.133 52.381 0.00 0.00 0.00 4.94
652 680 1.485066 AGTCAACTCTTCCAACCACGT 59.515 47.619 0.00 0.00 0.00 4.49
653 681 2.696707 AGTCAACTCTTCCAACCACGTA 59.303 45.455 0.00 0.00 0.00 3.57
654 682 2.798847 GTCAACTCTTCCAACCACGTAC 59.201 50.000 0.00 0.00 0.00 3.67
655 683 2.431419 TCAACTCTTCCAACCACGTACA 59.569 45.455 0.00 0.00 0.00 2.90
656 684 2.800544 CAACTCTTCCAACCACGTACAG 59.199 50.000 0.00 0.00 0.00 2.74
657 685 1.270147 ACTCTTCCAACCACGTACAGC 60.270 52.381 0.00 0.00 0.00 4.40
658 686 1.000955 CTCTTCCAACCACGTACAGCT 59.999 52.381 0.00 0.00 0.00 4.24
659 687 1.000506 TCTTCCAACCACGTACAGCTC 59.999 52.381 0.00 0.00 0.00 4.09
660 688 1.000955 CTTCCAACCACGTACAGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
661 689 0.317160 TCCAACCACGTACAGCTCTG 59.683 55.000 0.00 0.00 0.00 3.35
662 690 0.317160 CCAACCACGTACAGCTCTGA 59.683 55.000 3.60 0.00 0.00 3.27
663 691 1.270094 CCAACCACGTACAGCTCTGAA 60.270 52.381 3.60 0.00 0.00 3.02
664 692 1.792949 CAACCACGTACAGCTCTGAAC 59.207 52.381 3.60 0.00 0.00 3.18
665 693 0.317479 ACCACGTACAGCTCTGAACC 59.683 55.000 3.60 0.00 0.00 3.62
666 694 0.732880 CCACGTACAGCTCTGAACCG 60.733 60.000 3.60 5.24 0.00 4.44
667 695 0.732880 CACGTACAGCTCTGAACCGG 60.733 60.000 0.00 0.00 0.00 5.28
668 696 0.892358 ACGTACAGCTCTGAACCGGA 60.892 55.000 9.46 0.00 0.00 5.14
679 707 1.806542 CTGAACCGGACAACAATGGAG 59.193 52.381 9.46 0.00 0.00 3.86
722 761 0.251742 CATCCCCAAGCCACAAAGGA 60.252 55.000 0.00 0.00 41.22 3.36
929 976 4.821589 GCGCGTCCCCCTCTCTTG 62.822 72.222 8.43 0.00 0.00 3.02
992 1043 4.135153 CCGCACGCCTACTCTGCT 62.135 66.667 0.00 0.00 0.00 4.24
993 1044 2.580867 CGCACGCCTACTCTGCTC 60.581 66.667 0.00 0.00 0.00 4.26
994 1045 2.573869 GCACGCCTACTCTGCTCA 59.426 61.111 0.00 0.00 0.00 4.26
1030 1081 1.897137 ACCTGTCTGTCGCTCGTCA 60.897 57.895 0.00 0.00 0.00 4.35
1041 1092 2.880879 CTCGTCACCGTCGCCATG 60.881 66.667 0.00 0.00 35.01 3.66
1042 1093 4.429212 TCGTCACCGTCGCCATGG 62.429 66.667 7.63 7.63 35.01 3.66
1305 1371 1.926511 GCAACCTCACATTCCGGCTG 61.927 60.000 0.00 0.00 0.00 4.85
1335 1401 4.814294 CACTACGCGGAGGTGGCC 62.814 72.222 24.83 0.00 0.00 5.36
1503 1569 4.415332 TCGTCGACGAGCAAGGCC 62.415 66.667 34.97 0.00 44.22 5.19
1577 1649 2.742372 CACCAGCTGCCCGTACAC 60.742 66.667 8.66 0.00 0.00 2.90
1581 1653 4.373116 AGCTGCCCGTACACCGTG 62.373 66.667 0.00 0.00 33.66 4.94
1936 2008 1.200716 TCCGGAACACGCAGTAAGTAG 59.799 52.381 0.00 0.00 41.61 2.57
1937 2009 1.068055 CCGGAACACGCAGTAAGTAGT 60.068 52.381 0.00 0.00 41.61 2.73
1951 2031 6.505272 CAGTAAGTAGTTAATTAGGCGCTCT 58.495 40.000 7.64 5.38 0.00 4.09
1993 2073 1.760527 TGGGTCCCACATGTCAGTG 59.239 57.895 6.47 0.00 39.21 3.66
1994 2074 1.675641 GGGTCCCACATGTCAGTGC 60.676 63.158 1.78 0.00 38.18 4.40
1995 2075 1.073025 GGTCCCACATGTCAGTGCA 59.927 57.895 0.00 0.00 38.18 4.57
1996 2076 0.957395 GGTCCCACATGTCAGTGCAG 60.957 60.000 0.00 0.00 38.18 4.41
1998 2078 2.338015 CCCACATGTCAGTGCAGGC 61.338 63.158 0.00 0.00 38.18 4.85
1999 2079 2.338015 CCACATGTCAGTGCAGGCC 61.338 63.158 0.00 0.00 38.18 5.19
2011 2091 1.107114 TGCAGGCCGAAAAGTCAAAA 58.893 45.000 0.00 0.00 0.00 2.44
2016 2110 1.411246 GGCCGAAAAGTCAAAAGGGTT 59.589 47.619 0.00 0.00 0.00 4.11
2040 2137 2.066262 TGATCGGCGACTTTTCTTGTC 58.934 47.619 13.76 2.62 0.00 3.18
2041 2138 1.393883 GATCGGCGACTTTTCTTGTCC 59.606 52.381 13.76 0.00 0.00 4.02
2070 2167 0.713883 GACGTACAACATCAGCGTGG 59.286 55.000 0.00 0.00 35.86 4.94
2234 2331 4.598894 CTCAGCGCCTCCATCCCG 62.599 72.222 2.29 0.00 0.00 5.14
2456 2565 2.594048 TACGCGCACTGCACACTTG 61.594 57.895 5.73 0.00 46.97 3.16
2476 2585 6.204882 CACTTGTTCTCTTCGGTTAATTCCTT 59.795 38.462 0.00 0.00 0.00 3.36
2513 2630 5.505324 GCTGATTGCTGATTACTTCATCACC 60.505 44.000 0.00 0.00 38.95 4.02
2609 2732 2.243407 CGAGTTCGACTGTAAGCTCAC 58.757 52.381 0.00 0.00 43.02 3.51
2610 2733 2.350484 CGAGTTCGACTGTAAGCTCACA 60.350 50.000 0.00 0.00 43.02 3.58
2621 2744 5.164620 TGTAAGCTCACAATCATTCTCCA 57.835 39.130 0.00 0.00 0.00 3.86
2655 2791 7.263100 TGTATACCTGATGAATGAATTGTGC 57.737 36.000 0.00 0.00 0.00 4.57
2656 2792 7.056006 TGTATACCTGATGAATGAATTGTGCT 58.944 34.615 0.00 0.00 0.00 4.40
2657 2793 4.713824 ACCTGATGAATGAATTGTGCTG 57.286 40.909 0.00 0.00 0.00 4.41
2660 2796 5.889853 ACCTGATGAATGAATTGTGCTGTAT 59.110 36.000 0.00 0.00 0.00 2.29
2663 2799 8.021396 CCTGATGAATGAATTGTGCTGTATATG 58.979 37.037 0.00 0.00 0.00 1.78
2672 2808 6.829229 ATTGTGCTGTATATGGATCATTGG 57.171 37.500 0.00 0.00 0.00 3.16
2674 2810 5.693961 TGTGCTGTATATGGATCATTGGTT 58.306 37.500 0.00 0.00 0.00 3.67
2675 2811 5.532032 TGTGCTGTATATGGATCATTGGTTG 59.468 40.000 0.00 0.00 0.00 3.77
2676 2812 5.764686 GTGCTGTATATGGATCATTGGTTGA 59.235 40.000 0.00 0.00 39.12 3.18
2720 2859 1.342174 GGTTACAAGGACGTGGAGACA 59.658 52.381 0.00 0.00 38.70 3.41
2898 3040 3.580604 CTGCTTCCCCTGCTGGCTT 62.581 63.158 3.63 0.00 0.00 4.35
2899 3041 2.202236 CTGCTTCCCCTGCTGGCTTA 62.202 60.000 3.63 0.00 0.00 3.09
2922 3064 2.815211 CGGCCGTGGTCTGACATG 60.815 66.667 19.50 0.00 0.00 3.21
2938 3080 3.506059 ATGATCGGCGCGGGAGAAG 62.506 63.158 15.48 0.00 0.00 2.85
2939 3081 4.208686 GATCGGCGCGGGAGAAGT 62.209 66.667 15.48 0.00 0.00 3.01
2962 3104 9.899661 AAGTGGTGTACATACATACATACAAAT 57.100 29.630 13.54 0.00 37.40 2.32
2963 3105 9.899661 AGTGGTGTACATACATACATACAAATT 57.100 29.630 13.54 0.00 37.40 1.82
3060 3208 7.633193 ACTAGCTAGGTCGATCATTTATAGG 57.367 40.000 24.35 0.00 0.00 2.57
3062 3210 6.919775 AGCTAGGTCGATCATTTATAGGTT 57.080 37.500 0.00 0.00 0.00 3.50
3063 3211 6.926313 AGCTAGGTCGATCATTTATAGGTTC 58.074 40.000 0.00 0.00 0.00 3.62
3064 3212 5.800941 GCTAGGTCGATCATTTATAGGTTCG 59.199 44.000 0.00 0.00 0.00 3.95
3065 3213 5.135508 AGGTCGATCATTTATAGGTTCGG 57.864 43.478 0.00 0.00 30.58 4.30
3066 3214 4.587684 AGGTCGATCATTTATAGGTTCGGT 59.412 41.667 0.00 0.00 30.58 4.69
3067 3215 5.070047 AGGTCGATCATTTATAGGTTCGGTT 59.930 40.000 0.00 0.00 30.58 4.44
3068 3216 5.756833 GGTCGATCATTTATAGGTTCGGTTT 59.243 40.000 0.00 0.00 30.58 3.27
3069 3217 6.259387 GGTCGATCATTTATAGGTTCGGTTTT 59.741 38.462 0.00 0.00 30.58 2.43
3070 3218 7.123830 GTCGATCATTTATAGGTTCGGTTTTG 58.876 38.462 0.00 0.00 30.58 2.44
3071 3219 5.907391 CGATCATTTATAGGTTCGGTTTTGC 59.093 40.000 0.00 0.00 0.00 3.68
3072 3220 6.238374 CGATCATTTATAGGTTCGGTTTTGCT 60.238 38.462 0.00 0.00 0.00 3.91
3073 3221 6.189677 TCATTTATAGGTTCGGTTTTGCTG 57.810 37.500 0.00 0.00 0.00 4.41
3074 3222 5.941058 TCATTTATAGGTTCGGTTTTGCTGA 59.059 36.000 0.00 0.00 0.00 4.26
3075 3223 6.601613 TCATTTATAGGTTCGGTTTTGCTGAT 59.398 34.615 0.00 0.00 31.57 2.90
3076 3224 6.827586 TTTATAGGTTCGGTTTTGCTGATT 57.172 33.333 0.00 0.00 31.57 2.57
3077 3225 4.701956 ATAGGTTCGGTTTTGCTGATTG 57.298 40.909 0.00 0.00 31.57 2.67
3078 3226 1.613437 AGGTTCGGTTTTGCTGATTGG 59.387 47.619 0.00 0.00 31.57 3.16
3079 3227 1.339929 GGTTCGGTTTTGCTGATTGGT 59.660 47.619 0.00 0.00 31.57 3.67
3080 3228 2.223947 GGTTCGGTTTTGCTGATTGGTT 60.224 45.455 0.00 0.00 31.57 3.67
3081 3229 3.453424 GTTCGGTTTTGCTGATTGGTTT 58.547 40.909 0.00 0.00 31.57 3.27
3082 3230 3.090952 TCGGTTTTGCTGATTGGTTTG 57.909 42.857 0.00 0.00 0.00 2.93
3083 3231 2.428890 TCGGTTTTGCTGATTGGTTTGT 59.571 40.909 0.00 0.00 0.00 2.83
3084 3232 3.632604 TCGGTTTTGCTGATTGGTTTGTA 59.367 39.130 0.00 0.00 0.00 2.41
3085 3233 3.980775 CGGTTTTGCTGATTGGTTTGTAG 59.019 43.478 0.00 0.00 0.00 2.74
3086 3234 4.499019 CGGTTTTGCTGATTGGTTTGTAGT 60.499 41.667 0.00 0.00 0.00 2.73
3087 3235 4.744631 GGTTTTGCTGATTGGTTTGTAGTG 59.255 41.667 0.00 0.00 0.00 2.74
3088 3236 5.451242 GGTTTTGCTGATTGGTTTGTAGTGA 60.451 40.000 0.00 0.00 0.00 3.41
3089 3237 5.437289 TTTGCTGATTGGTTTGTAGTGAG 57.563 39.130 0.00 0.00 0.00 3.51
3168 3316 3.814842 TGCACTCCTTCTGTGTACAAATG 59.185 43.478 0.00 0.00 37.70 2.32
3173 3321 5.163301 ACTCCTTCTGTGTACAAATGTCACT 60.163 40.000 0.00 0.00 33.82 3.41
3175 3323 5.070446 TCCTTCTGTGTACAAATGTCACTCT 59.930 40.000 0.00 0.00 33.82 3.24
3176 3324 5.760253 CCTTCTGTGTACAAATGTCACTCTT 59.240 40.000 0.00 0.00 33.82 2.85
3177 3325 6.260936 CCTTCTGTGTACAAATGTCACTCTTT 59.739 38.462 0.00 0.00 33.82 2.52
3178 3326 6.844696 TCTGTGTACAAATGTCACTCTTTC 57.155 37.500 0.00 0.00 33.82 2.62
3179 3327 5.758296 TCTGTGTACAAATGTCACTCTTTCC 59.242 40.000 0.00 0.00 33.82 3.13
3180 3328 5.680619 TGTGTACAAATGTCACTCTTTCCT 58.319 37.500 0.00 0.00 33.82 3.36
3198 3346 5.607939 TTCCTTTTTCTTTTTGAGGGGAC 57.392 39.130 0.00 0.00 0.00 4.46
3212 3360 2.823154 GAGGGGACATCTAGGAATCTCG 59.177 54.545 0.00 0.00 0.00 4.04
3214 3362 2.559231 GGGGACATCTAGGAATCTCGAC 59.441 54.545 0.00 0.00 0.00 4.20
3221 3369 4.966965 TCTAGGAATCTCGACAGTGTTC 57.033 45.455 0.00 0.00 0.00 3.18
3226 3374 3.923461 GGAATCTCGACAGTGTTCTTCTG 59.077 47.826 0.00 0.00 38.68 3.02
3227 3375 2.423926 TCTCGACAGTGTTCTTCTGC 57.576 50.000 0.00 0.00 36.50 4.26
3228 3376 1.681264 TCTCGACAGTGTTCTTCTGCA 59.319 47.619 0.00 0.00 36.50 4.41
3229 3377 2.057316 CTCGACAGTGTTCTTCTGCAG 58.943 52.381 7.63 7.63 36.50 4.41
3230 3378 1.143305 CGACAGTGTTCTTCTGCAGG 58.857 55.000 15.13 0.00 36.50 4.85
3235 3383 0.951040 GTGTTCTTCTGCAGGTCCCG 60.951 60.000 15.13 0.00 0.00 5.14
3237 3385 0.034896 GTTCTTCTGCAGGTCCCGAA 59.965 55.000 15.13 6.89 0.00 4.30
3269 3417 1.349688 ACGGGTGAGCAGTAAAATCCA 59.650 47.619 0.00 0.00 0.00 3.41
3350 3498 3.056107 AGTGCTTCATCTGCATGCAAAAT 60.056 39.130 22.88 15.09 42.69 1.82
3386 3536 4.952957 TGACATTTGTGGAGGTCTGAAAAA 59.047 37.500 0.00 0.00 0.00 1.94
3450 3600 6.573664 ACGAATGTCATTCCATCAGAAAAA 57.426 33.333 17.95 0.00 38.21 1.94
3498 3648 8.606602 TCATCAATGTTTATCACAAAGAGATCG 58.393 33.333 0.00 0.00 39.50 3.69
3530 3680 8.167605 TCTTTTTGGATTTTACCGTTCATACA 57.832 30.769 0.00 0.00 0.00 2.29
3548 3698 1.002868 AGGTGCATTTGAGCTCGCT 60.003 52.632 9.64 0.00 34.99 4.93
3556 3706 3.451526 CATTTGAGCTCGCTATCAGACA 58.548 45.455 9.64 0.00 0.00 3.41
3557 3707 3.592898 TTTGAGCTCGCTATCAGACAA 57.407 42.857 9.64 0.00 0.00 3.18
3593 3793 3.691049 TTCTTCTGGAGCGTGTTTTTG 57.309 42.857 0.00 0.00 0.00 2.44
3608 3808 4.504097 GTGTTTTTGGTGTGCTTCAATCTC 59.496 41.667 0.00 0.00 0.00 2.75
3629 3829 2.607282 CGATAGGCCATAGTTCGACACC 60.607 54.545 5.01 0.00 31.74 4.16
3633 3833 0.462047 GCCATAGTTCGACACCCTGG 60.462 60.000 0.00 0.00 32.67 4.45
3641 3841 0.541998 TCGACACCCTGGACTGACAT 60.542 55.000 0.00 0.00 0.00 3.06
3650 3850 1.448540 GGACTGACATGGAGCACCG 60.449 63.158 0.00 0.00 39.42 4.94
3675 3875 2.107204 AGCTTTTGGAGGTGATGACTGT 59.893 45.455 0.00 0.00 34.08 3.55
3678 3878 4.794003 GCTTTTGGAGGTGATGACTGTTTG 60.794 45.833 0.00 0.00 0.00 2.93
3691 3891 3.822167 TGACTGTTTGTGTGATCATGCAT 59.178 39.130 0.00 0.00 0.00 3.96
3695 3895 5.241285 ACTGTTTGTGTGATCATGCATAACA 59.759 36.000 0.00 12.15 0.00 2.41
3696 3896 6.071784 ACTGTTTGTGTGATCATGCATAACAT 60.072 34.615 0.00 0.00 40.66 2.71
3712 3912 3.465742 AACATGATCGTGGAGGATGAG 57.534 47.619 18.97 0.00 0.00 2.90
3724 3924 2.402305 GAGGATGAGCGTGATGACATC 58.598 52.381 8.59 8.59 38.53 3.06
3746 3946 3.713826 TCTATGACCAAGGGTTCCAAC 57.286 47.619 0.00 0.00 35.25 3.77
3750 3950 2.128535 TGACCAAGGGTTCCAACTACA 58.871 47.619 0.00 0.00 35.25 2.74
3765 3965 4.261994 CCAACTACAGGGTGAAATTGTTGG 60.262 45.833 0.00 0.00 44.31 3.77
3770 3970 0.321346 GGGTGAAATTGTTGGGCCTG 59.679 55.000 4.53 0.00 0.00 4.85
3779 3979 2.115910 TTGGGCCTGAGCACCAAG 59.884 61.111 4.53 0.00 44.14 3.61
3785 3985 1.371183 CCTGAGCACCAAGAACCGA 59.629 57.895 0.00 0.00 0.00 4.69
3786 3986 0.036010 CCTGAGCACCAAGAACCGAT 60.036 55.000 0.00 0.00 0.00 4.18
3799 3999 5.503498 CAAGAACCGATAACGTTTGAACAA 58.497 37.500 5.91 0.00 37.88 2.83
3804 4004 6.249035 ACCGATAACGTTTGAACAATTCAT 57.751 33.333 5.91 0.00 37.38 2.57
3806 4006 6.072948 ACCGATAACGTTTGAACAATTCATCA 60.073 34.615 5.91 0.00 37.38 3.07
3809 4009 8.849490 CGATAACGTTTGAACAATTCATCAAAT 58.151 29.630 5.91 5.77 44.62 2.32
3838 4038 2.223900 TGAAATGCGTGATTGGCAAACA 60.224 40.909 3.01 4.71 44.66 2.83
3839 4039 2.068837 AATGCGTGATTGGCAAACAG 57.931 45.000 10.69 6.52 44.66 3.16
3850 4050 4.870123 TTGGCAAACAGATATGCAACTT 57.130 36.364 0.00 0.00 44.32 2.66
3854 4054 4.860907 GGCAAACAGATATGCAACTTCAAG 59.139 41.667 0.00 0.00 44.32 3.02
3857 4057 6.810182 GCAAACAGATATGCAACTTCAAGATT 59.190 34.615 0.00 0.00 42.12 2.40
3869 4069 6.145535 CAACTTCAAGATTACTTGGTTGAGC 58.854 40.000 18.05 0.00 46.50 4.26
3876 4076 5.804639 AGATTACTTGGTTGAGCACATGTA 58.195 37.500 0.00 0.00 0.00 2.29
3889 4089 2.350522 CACATGTAGACTCACCTTGGC 58.649 52.381 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.150296 ACTCACATAATGTAGTGCATATTAGCA 58.850 33.333 0.00 0.00 43.35 3.49
5 6 8.539770 ACTCACATAATGTAGTGCATATTAGC 57.460 34.615 0.00 0.00 36.67 3.09
8 9 9.261180 GTGTACTCACATAATGTAGTGCATATT 57.739 33.333 0.00 0.00 43.37 1.28
9 10 8.818141 GTGTACTCACATAATGTAGTGCATAT 57.182 34.615 0.00 0.00 43.37 1.78
25 26 3.963428 AGATGGAACCTGTGTACTCAC 57.037 47.619 0.00 0.00 44.08 3.51
26 27 5.023452 ACATAGATGGAACCTGTGTACTCA 58.977 41.667 0.00 0.00 34.84 3.41
34 35 6.425114 GCAATACTGTACATAGATGGAACCTG 59.575 42.308 0.00 0.00 0.00 4.00
53 54 7.379750 CCCTCTAGTCTAAAGTATGGCAATAC 58.620 42.308 2.71 2.71 39.24 1.89
71 75 3.721087 TGAAAAAGAAGCCCCCTCTAG 57.279 47.619 0.00 0.00 0.00 2.43
72 76 5.036916 TCTATGAAAAAGAAGCCCCCTCTA 58.963 41.667 0.00 0.00 0.00 2.43
74 78 4.236527 TCTATGAAAAAGAAGCCCCCTC 57.763 45.455 0.00 0.00 0.00 4.30
75 79 4.230502 TGATCTATGAAAAAGAAGCCCCCT 59.769 41.667 0.00 0.00 0.00 4.79
76 80 4.536765 TGATCTATGAAAAAGAAGCCCCC 58.463 43.478 0.00 0.00 0.00 5.40
77 81 8.414629 AATATGATCTATGAAAAAGAAGCCCC 57.585 34.615 0.00 0.00 0.00 5.80
92 96 9.893634 GTAGGTGCTAGAGAGTAATATGATCTA 57.106 37.037 0.00 0.00 0.00 1.98
101 105 4.446023 GGCCTAGTAGGTGCTAGAGAGTAA 60.446 50.000 17.69 0.00 40.54 2.24
115 119 3.256136 CCTGATTTACTCCGGCCTAGTAG 59.744 52.174 12.89 5.33 31.37 2.57
116 120 3.228453 CCTGATTTACTCCGGCCTAGTA 58.772 50.000 10.02 10.02 0.00 1.82
117 121 2.040178 CCTGATTTACTCCGGCCTAGT 58.960 52.381 11.85 11.85 0.00 2.57
118 122 2.040178 ACCTGATTTACTCCGGCCTAG 58.960 52.381 0.00 0.00 31.66 3.02
119 123 1.760613 CACCTGATTTACTCCGGCCTA 59.239 52.381 0.00 0.00 31.66 3.93
126 130 1.745653 GGCCAAGCACCTGATTTACTC 59.254 52.381 0.00 0.00 0.00 2.59
161 167 2.435586 ATGCAGTGCGAGCAGGAC 60.436 61.111 11.20 0.00 46.36 3.85
168 174 2.125952 CTGGTCGATGCAGTGCGA 60.126 61.111 11.20 5.17 0.00 5.10
169 175 3.190849 CCTGGTCGATGCAGTGCG 61.191 66.667 11.20 0.00 0.00 5.34
170 176 1.812922 CTCCTGGTCGATGCAGTGC 60.813 63.158 8.58 8.58 0.00 4.40
171 177 0.459237 GTCTCCTGGTCGATGCAGTG 60.459 60.000 0.00 0.00 0.00 3.66
172 178 0.613292 AGTCTCCTGGTCGATGCAGT 60.613 55.000 0.00 0.00 0.00 4.40
182 188 1.144936 GATCGGCCAAGTCTCCTGG 59.855 63.158 2.24 0.00 0.00 4.45
185 191 0.462759 CCTTGATCGGCCAAGTCTCC 60.463 60.000 2.24 0.00 41.34 3.71
189 195 1.078143 GCTCCTTGATCGGCCAAGT 60.078 57.895 2.24 0.00 41.34 3.16
191 197 2.272146 GGCTCCTTGATCGGCCAA 59.728 61.111 2.24 0.00 43.59 4.52
231 237 9.871299 CTAGAGTATATGTAACTATGCGCATAG 57.129 37.037 41.83 41.83 44.79 2.23
262 284 2.364970 AGCAAGCCAACAAAATAGTGCA 59.635 40.909 0.00 0.00 33.21 4.57
263 285 3.030668 AGCAAGCCAACAAAATAGTGC 57.969 42.857 0.00 0.00 0.00 4.40
264 286 4.218417 AGGTAGCAAGCCAACAAAATAGTG 59.782 41.667 0.00 0.00 0.00 2.74
266 288 5.648092 ACTAGGTAGCAAGCCAACAAAATAG 59.352 40.000 0.00 0.00 0.00 1.73
267 289 5.566469 ACTAGGTAGCAAGCCAACAAAATA 58.434 37.500 0.00 0.00 0.00 1.40
268 290 4.407365 ACTAGGTAGCAAGCCAACAAAAT 58.593 39.130 0.00 0.00 0.00 1.82
278 300 2.229302 GCCCGATCTACTAGGTAGCAAG 59.771 54.545 0.00 0.00 36.22 4.01
290 312 0.899720 AAACAACGAGGCCCGATCTA 59.100 50.000 18.74 0.00 41.76 1.98
291 313 0.036306 AAAACAACGAGGCCCGATCT 59.964 50.000 18.74 0.00 41.76 2.75
292 314 0.446616 GAAAACAACGAGGCCCGATC 59.553 55.000 18.74 0.33 41.76 3.69
314 336 3.420300 TCTAGACAGACGAGTTGACCT 57.580 47.619 0.00 0.00 0.00 3.85
325 347 9.254133 GAAATGATTTGATCGAATCTAGACAGA 57.746 33.333 28.18 12.68 37.04 3.41
362 389 0.743345 GGTACGGTGCATCCTGGTTC 60.743 60.000 0.00 0.00 0.00 3.62
366 393 0.821517 TGTAGGTACGGTGCATCCTG 59.178 55.000 0.00 0.00 0.00 3.86
374 401 4.396522 GACAGAGGATATGTAGGTACGGT 58.603 47.826 0.00 0.00 0.00 4.83
375 402 3.757493 GGACAGAGGATATGTAGGTACGG 59.243 52.174 0.00 0.00 0.00 4.02
376 403 3.436015 CGGACAGAGGATATGTAGGTACG 59.564 52.174 0.00 0.00 0.00 3.67
377 404 4.215827 CACGGACAGAGGATATGTAGGTAC 59.784 50.000 0.00 0.00 0.00 3.34
380 407 2.029828 GCACGGACAGAGGATATGTAGG 60.030 54.545 0.00 0.00 0.00 3.18
381 408 2.623416 TGCACGGACAGAGGATATGTAG 59.377 50.000 0.00 0.00 0.00 2.74
382 409 2.661718 TGCACGGACAGAGGATATGTA 58.338 47.619 0.00 0.00 0.00 2.29
383 410 1.485124 TGCACGGACAGAGGATATGT 58.515 50.000 0.00 0.00 0.00 2.29
384 411 2.205074 GTTGCACGGACAGAGGATATG 58.795 52.381 0.00 0.00 0.00 1.78
385 412 1.139058 GGTTGCACGGACAGAGGATAT 59.861 52.381 0.00 0.00 0.00 1.63
386 413 0.535335 GGTTGCACGGACAGAGGATA 59.465 55.000 0.00 0.00 0.00 2.59
387 414 1.194781 AGGTTGCACGGACAGAGGAT 61.195 55.000 0.00 0.00 0.00 3.24
388 415 1.837051 AGGTTGCACGGACAGAGGA 60.837 57.895 0.00 0.00 0.00 3.71
397 424 1.660052 CGAATGTCAACAGGTTGCACG 60.660 52.381 7.28 6.34 40.24 5.34
400 427 2.546368 TGTACGAATGTCAACAGGTTGC 59.454 45.455 7.28 3.93 40.24 4.17
438 465 7.260387 TGGGAGAGGATAGATAGTACAGTAG 57.740 44.000 0.00 0.00 0.00 2.57
439 466 7.311992 CCATGGGAGAGGATAGATAGTACAGTA 60.312 44.444 2.85 0.00 0.00 2.74
440 467 6.489603 CATGGGAGAGGATAGATAGTACAGT 58.510 44.000 0.00 0.00 0.00 3.55
441 468 5.890985 CCATGGGAGAGGATAGATAGTACAG 59.109 48.000 2.85 0.00 0.00 2.74
442 469 5.811363 GCCATGGGAGAGGATAGATAGTACA 60.811 48.000 15.13 0.00 0.00 2.90
443 470 4.647399 GCCATGGGAGAGGATAGATAGTAC 59.353 50.000 15.13 0.00 0.00 2.73
444 471 4.546195 AGCCATGGGAGAGGATAGATAGTA 59.454 45.833 15.13 0.00 0.00 1.82
445 472 3.339436 AGCCATGGGAGAGGATAGATAGT 59.661 47.826 15.13 0.00 0.00 2.12
473 500 0.816825 ATGCACTAATGGGCAGAGCG 60.817 55.000 0.00 0.00 44.24 5.03
474 501 1.876156 GTATGCACTAATGGGCAGAGC 59.124 52.381 0.00 0.00 44.24 4.09
497 525 1.135859 AGCTGCACACGTACGTACTAC 60.136 52.381 22.34 11.40 0.00 2.73
498 526 1.135888 CAGCTGCACACGTACGTACTA 60.136 52.381 22.34 7.09 0.00 1.82
499 527 0.386858 CAGCTGCACACGTACGTACT 60.387 55.000 22.34 6.25 0.00 2.73
501 529 1.731613 GCAGCTGCACACGTACGTA 60.732 57.895 33.36 4.29 41.59 3.57
502 530 3.036084 GCAGCTGCACACGTACGT 61.036 61.111 33.36 16.72 41.59 3.57
503 531 4.121227 CGCAGCTGCACACGTACG 62.121 66.667 36.03 15.01 42.21 3.67
504 532 2.480426 GAACGCAGCTGCACACGTAC 62.480 60.000 36.03 16.39 42.21 3.67
505 533 2.279851 AACGCAGCTGCACACGTA 60.280 55.556 36.03 0.00 42.21 3.57
506 534 3.640000 GAACGCAGCTGCACACGT 61.640 61.111 36.03 23.43 42.21 4.49
507 535 4.374702 GGAACGCAGCTGCACACG 62.375 66.667 36.03 22.76 42.21 4.49
508 536 3.279116 TGGAACGCAGCTGCACAC 61.279 61.111 36.03 24.43 42.21 3.82
509 537 3.279116 GTGGAACGCAGCTGCACA 61.279 61.111 36.03 25.02 44.30 4.57
520 548 0.596600 TTGTGAGCTCGTCGTGGAAC 60.597 55.000 9.64 0.00 0.00 3.62
529 557 5.164158 GCAATGTAAATTTGTTGTGAGCTCG 60.164 40.000 9.64 0.00 0.00 5.03
559 587 1.477105 GCCGTTTCTTTGTTCTGCAC 58.523 50.000 0.00 0.00 0.00 4.57
564 592 0.318699 GCAGGGCCGTTTCTTTGTTC 60.319 55.000 0.00 0.00 0.00 3.18
575 603 0.953960 AGAAAAACGTAGCAGGGCCG 60.954 55.000 0.00 0.00 0.00 6.13
578 606 7.436970 ACAAATTTAAAGAAAAACGTAGCAGGG 59.563 33.333 0.00 0.00 0.00 4.45
600 628 0.038021 TGCTCTGCTGGGCATACAAA 59.962 50.000 14.93 0.00 38.13 2.83
601 629 0.677731 GTGCTCTGCTGGGCATACAA 60.678 55.000 21.82 0.00 40.66 2.41
602 630 1.078214 GTGCTCTGCTGGGCATACA 60.078 57.895 21.82 0.00 40.66 2.29
603 631 1.821332 GGTGCTCTGCTGGGCATAC 60.821 63.158 21.82 13.67 40.66 2.39
604 632 2.591753 GGTGCTCTGCTGGGCATA 59.408 61.111 21.82 0.00 40.66 3.14
605 633 4.790962 CGGTGCTCTGCTGGGCAT 62.791 66.667 21.82 0.00 40.66 4.40
609 637 3.965539 CTTCCCGGTGCTCTGCTGG 62.966 68.421 0.00 0.00 0.00 4.85
610 638 2.435586 CTTCCCGGTGCTCTGCTG 60.436 66.667 0.00 0.00 0.00 4.41
611 639 3.710722 CCTTCCCGGTGCTCTGCT 61.711 66.667 0.00 0.00 0.00 4.24
612 640 4.021925 ACCTTCCCGGTGCTCTGC 62.022 66.667 0.00 0.00 46.80 4.26
620 648 0.396811 AGTTGACTGAACCTTCCCGG 59.603 55.000 0.00 0.00 34.80 5.73
621 649 1.344763 AGAGTTGACTGAACCTTCCCG 59.655 52.381 0.00 0.00 34.80 5.14
622 650 3.403968 GAAGAGTTGACTGAACCTTCCC 58.596 50.000 0.00 0.00 36.66 3.97
623 651 3.403968 GGAAGAGTTGACTGAACCTTCC 58.596 50.000 11.36 11.36 45.14 3.46
624 652 4.073293 TGGAAGAGTTGACTGAACCTTC 57.927 45.455 0.00 0.00 39.13 3.46
625 653 4.200092 GTTGGAAGAGTTGACTGAACCTT 58.800 43.478 0.00 0.00 34.80 3.50
626 654 3.433740 GGTTGGAAGAGTTGACTGAACCT 60.434 47.826 0.00 0.00 34.80 3.50
627 655 2.879026 GGTTGGAAGAGTTGACTGAACC 59.121 50.000 0.00 0.00 34.80 3.62
628 656 3.312697 GTGGTTGGAAGAGTTGACTGAAC 59.687 47.826 0.00 0.00 34.40 3.18
629 657 3.541632 GTGGTTGGAAGAGTTGACTGAA 58.458 45.455 0.00 0.00 0.00 3.02
630 658 2.483013 CGTGGTTGGAAGAGTTGACTGA 60.483 50.000 0.00 0.00 0.00 3.41
631 659 1.867233 CGTGGTTGGAAGAGTTGACTG 59.133 52.381 0.00 0.00 0.00 3.51
632 660 1.485066 ACGTGGTTGGAAGAGTTGACT 59.515 47.619 0.00 0.00 0.00 3.41
633 661 1.949465 ACGTGGTTGGAAGAGTTGAC 58.051 50.000 0.00 0.00 0.00 3.18
634 662 2.431419 TGTACGTGGTTGGAAGAGTTGA 59.569 45.455 0.00 0.00 0.00 3.18
635 663 2.800544 CTGTACGTGGTTGGAAGAGTTG 59.199 50.000 0.00 0.00 0.00 3.16
636 664 2.805657 GCTGTACGTGGTTGGAAGAGTT 60.806 50.000 0.00 0.00 0.00 3.01
637 665 1.270147 GCTGTACGTGGTTGGAAGAGT 60.270 52.381 0.00 0.00 0.00 3.24
638 666 1.000955 AGCTGTACGTGGTTGGAAGAG 59.999 52.381 0.00 0.00 0.00 2.85
639 667 1.000506 GAGCTGTACGTGGTTGGAAGA 59.999 52.381 0.00 0.00 0.00 2.87
640 668 1.000955 AGAGCTGTACGTGGTTGGAAG 59.999 52.381 0.00 0.00 0.00 3.46
641 669 1.045407 AGAGCTGTACGTGGTTGGAA 58.955 50.000 0.00 0.00 0.00 3.53
642 670 0.317160 CAGAGCTGTACGTGGTTGGA 59.683 55.000 0.00 0.00 0.00 3.53
643 671 0.317160 TCAGAGCTGTACGTGGTTGG 59.683 55.000 0.00 0.00 0.00 3.77
644 672 1.792949 GTTCAGAGCTGTACGTGGTTG 59.207 52.381 0.00 0.00 0.00 3.77
645 673 1.270147 GGTTCAGAGCTGTACGTGGTT 60.270 52.381 0.00 0.00 32.57 3.67
646 674 0.317479 GGTTCAGAGCTGTACGTGGT 59.683 55.000 0.00 0.00 32.57 4.16
647 675 0.732880 CGGTTCAGAGCTGTACGTGG 60.733 60.000 0.00 0.00 32.57 4.94
648 676 0.732880 CCGGTTCAGAGCTGTACGTG 60.733 60.000 0.00 0.00 32.57 4.49
649 677 0.892358 TCCGGTTCAGAGCTGTACGT 60.892 55.000 0.00 0.00 32.57 3.57
650 678 0.456312 GTCCGGTTCAGAGCTGTACG 60.456 60.000 0.00 1.69 32.57 3.67
651 679 0.601558 TGTCCGGTTCAGAGCTGTAC 59.398 55.000 0.00 0.00 0.00 2.90
652 680 1.000506 GTTGTCCGGTTCAGAGCTGTA 59.999 52.381 0.00 0.00 0.00 2.74
653 681 0.249911 GTTGTCCGGTTCAGAGCTGT 60.250 55.000 0.00 0.00 0.00 4.40
654 682 0.249868 TGTTGTCCGGTTCAGAGCTG 60.250 55.000 0.00 0.00 0.00 4.24
655 683 0.468226 TTGTTGTCCGGTTCAGAGCT 59.532 50.000 0.00 0.00 0.00 4.09
656 684 1.197721 CATTGTTGTCCGGTTCAGAGC 59.802 52.381 0.00 0.00 0.00 4.09
657 685 1.806542 CCATTGTTGTCCGGTTCAGAG 59.193 52.381 0.00 0.00 0.00 3.35
658 686 1.418264 TCCATTGTTGTCCGGTTCAGA 59.582 47.619 0.00 0.00 0.00 3.27
659 687 1.806542 CTCCATTGTTGTCCGGTTCAG 59.193 52.381 0.00 0.00 0.00 3.02
660 688 1.544537 CCTCCATTGTTGTCCGGTTCA 60.545 52.381 0.00 0.00 0.00 3.18
661 689 1.165270 CCTCCATTGTTGTCCGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
662 690 0.251165 CCCTCCATTGTTGTCCGGTT 60.251 55.000 0.00 0.00 0.00 4.44
663 691 1.131303 TCCCTCCATTGTTGTCCGGT 61.131 55.000 0.00 0.00 0.00 5.28
664 692 0.676782 GTCCCTCCATTGTTGTCCGG 60.677 60.000 0.00 0.00 0.00 5.14
665 693 1.019278 CGTCCCTCCATTGTTGTCCG 61.019 60.000 0.00 0.00 0.00 4.79
666 694 0.036306 ACGTCCCTCCATTGTTGTCC 59.964 55.000 0.00 0.00 0.00 4.02
667 695 1.270625 TGACGTCCCTCCATTGTTGTC 60.271 52.381 14.12 0.00 0.00 3.18
668 696 0.762418 TGACGTCCCTCCATTGTTGT 59.238 50.000 14.12 0.00 0.00 3.32
679 707 4.430765 ATCACCGCGTGACGTCCC 62.431 66.667 14.12 0.00 45.65 4.46
722 761 6.122277 TCCATGAGAAGACTTGACTTTTGTT 58.878 36.000 0.00 0.00 0.00 2.83
850 896 4.922026 ACGTCAACGGTGGGTGGC 62.922 66.667 0.00 0.00 44.95 5.01
918 965 2.998316 CTTAAGAGCAAGAGAGGGGG 57.002 55.000 0.00 0.00 0.00 5.40
1259 1319 1.301677 GAAGTTGAGCAGCCCCTTCG 61.302 60.000 0.00 0.00 0.00 3.79
1260 1320 1.301677 CGAAGTTGAGCAGCCCCTTC 61.302 60.000 0.00 0.00 0.00 3.46
1261 1321 1.302832 CGAAGTTGAGCAGCCCCTT 60.303 57.895 0.00 0.00 0.00 3.95
1262 1322 2.348998 CGAAGTTGAGCAGCCCCT 59.651 61.111 0.00 0.00 0.00 4.79
1296 1362 3.090532 GACCCCTCCAGCCGGAAT 61.091 66.667 5.05 0.00 42.21 3.01
1305 1371 3.075005 TAGTGCAGCGACCCCTCC 61.075 66.667 0.00 0.00 0.00 4.30
1479 1545 2.504244 CTCGTCGACGACTTGCCC 60.504 66.667 34.97 0.00 44.22 5.36
1482 1548 1.337817 CCTTGCTCGTCGACGACTTG 61.338 60.000 34.97 25.85 44.22 3.16
1666 1738 2.257371 CTTCACCGCCGTCGAAGA 59.743 61.111 6.87 0.00 38.75 2.87
1667 1739 2.809601 CCTTCACCGCCGTCGAAG 60.810 66.667 5.93 5.93 38.10 3.79
1936 2008 5.573669 GCTAGTGATAGAGCGCCTAATTAAC 59.426 44.000 2.29 3.68 0.00 2.01
1937 2009 5.243060 TGCTAGTGATAGAGCGCCTAATTAA 59.757 40.000 2.29 0.00 41.83 1.40
1951 2031 2.022195 GTCGGTGTCCTGCTAGTGATA 58.978 52.381 0.00 0.00 0.00 2.15
1993 2073 1.602920 CCTTTTGACTTTTCGGCCTGC 60.603 52.381 0.00 0.00 0.00 4.85
1994 2074 1.000274 CCCTTTTGACTTTTCGGCCTG 60.000 52.381 0.00 0.00 0.00 4.85
1995 2075 1.328279 CCCTTTTGACTTTTCGGCCT 58.672 50.000 0.00 0.00 0.00 5.19
1996 2076 1.037493 ACCCTTTTGACTTTTCGGCC 58.963 50.000 0.00 0.00 0.00 6.13
1998 2078 3.702330 GTCAACCCTTTTGACTTTTCGG 58.298 45.455 9.41 0.00 43.91 4.30
2011 2091 1.982395 TCGCCGATCAGTCAACCCT 60.982 57.895 0.00 0.00 0.00 4.34
2016 2110 1.272490 AGAAAAGTCGCCGATCAGTCA 59.728 47.619 0.00 0.00 0.00 3.41
2041 2138 4.710695 TGTACGTCGGGCTGCACG 62.711 66.667 19.91 19.91 41.90 5.34
2123 2220 3.966026 GAAGGACGTGCCGGAGTCG 62.966 68.421 5.05 8.88 43.43 4.18
2234 2331 1.473278 AGCTGGTAGCAGTACTCGAAC 59.527 52.381 22.21 4.02 45.56 3.95
2446 2543 1.528586 CCGAAGAGAACAAGTGTGCAG 59.471 52.381 0.00 0.00 0.00 4.41
2447 2544 1.134521 ACCGAAGAGAACAAGTGTGCA 60.135 47.619 0.00 0.00 0.00 4.57
2451 2548 5.701290 AGGAATTAACCGAAGAGAACAAGTG 59.299 40.000 0.00 0.00 34.73 3.16
2452 2549 5.866207 AGGAATTAACCGAAGAGAACAAGT 58.134 37.500 0.00 0.00 34.73 3.16
2456 2565 6.237861 CGATGAAGGAATTAACCGAAGAGAAC 60.238 42.308 0.00 0.00 34.73 3.01
2513 2630 6.169419 TGAAGTTCTCTGCATGTTTTATCG 57.831 37.500 4.17 0.00 0.00 2.92
2590 2709 3.284323 TGTGAGCTTACAGTCGAACTC 57.716 47.619 7.32 0.00 0.00 3.01
2646 2782 7.040271 CCAATGATCCATATACAGCACAATTCA 60.040 37.037 0.00 0.00 0.00 2.57
2653 2789 5.939447 TCAACCAATGATCCATATACAGCA 58.061 37.500 0.00 0.00 31.50 4.41
2919 3061 3.790334 TTCTCCCGCGCCGATCATG 62.790 63.158 0.00 0.00 0.00 3.07
2920 3062 3.506059 CTTCTCCCGCGCCGATCAT 62.506 63.158 0.00 0.00 0.00 2.45
2922 3064 4.208686 ACTTCTCCCGCGCCGATC 62.209 66.667 0.00 0.00 0.00 3.69
2965 3107 9.907576 CTGTATCAAAATTCTGAATTCGACTAC 57.092 33.333 15.43 14.14 0.00 2.73
2966 3108 9.869757 TCTGTATCAAAATTCTGAATTCGACTA 57.130 29.630 15.43 4.32 0.00 2.59
2967 3109 8.777865 TCTGTATCAAAATTCTGAATTCGACT 57.222 30.769 15.43 5.14 0.00 4.18
2968 3110 9.994432 AATCTGTATCAAAATTCTGAATTCGAC 57.006 29.630 15.43 9.83 0.00 4.20
2970 3112 9.992910 TGAATCTGTATCAAAATTCTGAATTCG 57.007 29.630 15.43 10.30 0.00 3.34
3026 3174 9.074576 TGATCGACCTAGCTAGTATATGAAAAA 57.925 33.333 19.31 0.00 0.00 1.94
3027 3175 8.631480 TGATCGACCTAGCTAGTATATGAAAA 57.369 34.615 19.31 1.25 0.00 2.29
3028 3176 8.809468 ATGATCGACCTAGCTAGTATATGAAA 57.191 34.615 19.31 0.00 0.00 2.69
3029 3177 8.809468 AATGATCGACCTAGCTAGTATATGAA 57.191 34.615 19.31 1.11 0.00 2.57
3030 3178 8.809468 AAATGATCGACCTAGCTAGTATATGA 57.191 34.615 19.31 9.82 0.00 2.15
3034 3182 9.344772 CCTATAAATGATCGACCTAGCTAGTAT 57.655 37.037 19.31 7.22 0.00 2.12
3035 3183 8.327271 ACCTATAAATGATCGACCTAGCTAGTA 58.673 37.037 19.31 1.79 0.00 1.82
3036 3184 7.176490 ACCTATAAATGATCGACCTAGCTAGT 58.824 38.462 19.31 7.69 0.00 2.57
3037 3185 7.633193 ACCTATAAATGATCGACCTAGCTAG 57.367 40.000 14.20 14.20 0.00 3.42
3038 3186 7.148289 CGAACCTATAAATGATCGACCTAGCTA 60.148 40.741 0.00 0.00 32.38 3.32
3039 3187 6.349445 CGAACCTATAAATGATCGACCTAGCT 60.349 42.308 0.00 0.00 32.38 3.32
3048 3196 6.912591 CAGCAAAACCGAACCTATAAATGATC 59.087 38.462 0.00 0.00 0.00 2.92
3060 3208 2.793278 ACCAATCAGCAAAACCGAAC 57.207 45.000 0.00 0.00 0.00 3.95
3062 3210 2.428890 ACAAACCAATCAGCAAAACCGA 59.571 40.909 0.00 0.00 0.00 4.69
3063 3211 2.820330 ACAAACCAATCAGCAAAACCG 58.180 42.857 0.00 0.00 0.00 4.44
3064 3212 4.744631 CACTACAAACCAATCAGCAAAACC 59.255 41.667 0.00 0.00 0.00 3.27
3065 3213 5.587289 TCACTACAAACCAATCAGCAAAAC 58.413 37.500 0.00 0.00 0.00 2.43
3066 3214 5.221224 CCTCACTACAAACCAATCAGCAAAA 60.221 40.000 0.00 0.00 0.00 2.44
3067 3215 4.278170 CCTCACTACAAACCAATCAGCAAA 59.722 41.667 0.00 0.00 0.00 3.68
3068 3216 3.820467 CCTCACTACAAACCAATCAGCAA 59.180 43.478 0.00 0.00 0.00 3.91
3069 3217 3.072330 TCCTCACTACAAACCAATCAGCA 59.928 43.478 0.00 0.00 0.00 4.41
3070 3218 3.674997 TCCTCACTACAAACCAATCAGC 58.325 45.455 0.00 0.00 0.00 4.26
3071 3219 4.154918 GCTTCCTCACTACAAACCAATCAG 59.845 45.833 0.00 0.00 0.00 2.90
3072 3220 4.072131 GCTTCCTCACTACAAACCAATCA 58.928 43.478 0.00 0.00 0.00 2.57
3073 3221 3.440522 GGCTTCCTCACTACAAACCAATC 59.559 47.826 0.00 0.00 0.00 2.67
3074 3222 3.421844 GGCTTCCTCACTACAAACCAAT 58.578 45.455 0.00 0.00 0.00 3.16
3075 3223 2.488347 GGGCTTCCTCACTACAAACCAA 60.488 50.000 0.00 0.00 0.00 3.67
3076 3224 1.073284 GGGCTTCCTCACTACAAACCA 59.927 52.381 0.00 0.00 0.00 3.67
3077 3225 1.073284 TGGGCTTCCTCACTACAAACC 59.927 52.381 0.00 0.00 0.00 3.27
3078 3226 2.561478 TGGGCTTCCTCACTACAAAC 57.439 50.000 0.00 0.00 0.00 2.93
3079 3227 2.375174 ACATGGGCTTCCTCACTACAAA 59.625 45.455 0.00 0.00 0.00 2.83
3080 3228 1.985159 ACATGGGCTTCCTCACTACAA 59.015 47.619 0.00 0.00 0.00 2.41
3081 3229 1.278985 CACATGGGCTTCCTCACTACA 59.721 52.381 0.00 0.00 0.00 2.74
3082 3230 1.279271 ACACATGGGCTTCCTCACTAC 59.721 52.381 0.00 0.00 0.00 2.73
3083 3231 1.656587 ACACATGGGCTTCCTCACTA 58.343 50.000 0.00 0.00 0.00 2.74
3084 3232 1.279271 GTACACATGGGCTTCCTCACT 59.721 52.381 0.00 0.00 0.00 3.41
3085 3233 1.003118 TGTACACATGGGCTTCCTCAC 59.997 52.381 0.00 0.00 0.00 3.51
3086 3234 1.357137 TGTACACATGGGCTTCCTCA 58.643 50.000 0.00 0.00 0.00 3.86
3087 3235 2.717639 ATGTACACATGGGCTTCCTC 57.282 50.000 0.00 0.00 34.83 3.71
3112 3260 0.798159 TTCGCATCTGCATGTGACAC 59.202 50.000 3.08 0.00 46.95 3.67
3168 3316 7.489435 CCTCAAAAAGAAAAAGGAAAGAGTGAC 59.511 37.037 0.00 0.00 0.00 3.67
3173 3321 5.961421 TCCCCTCAAAAAGAAAAAGGAAAGA 59.039 36.000 0.00 0.00 0.00 2.52
3175 3323 5.485708 TGTCCCCTCAAAAAGAAAAAGGAAA 59.514 36.000 0.00 0.00 0.00 3.13
3176 3324 5.026790 TGTCCCCTCAAAAAGAAAAAGGAA 58.973 37.500 0.00 0.00 0.00 3.36
3177 3325 4.615513 TGTCCCCTCAAAAAGAAAAAGGA 58.384 39.130 0.00 0.00 0.00 3.36
3178 3326 5.305386 AGATGTCCCCTCAAAAAGAAAAAGG 59.695 40.000 0.00 0.00 0.00 3.11
3179 3327 6.410942 AGATGTCCCCTCAAAAAGAAAAAG 57.589 37.500 0.00 0.00 0.00 2.27
3180 3328 6.493458 CCTAGATGTCCCCTCAAAAAGAAAAA 59.507 38.462 0.00 0.00 0.00 1.94
3198 3346 4.909696 ACACTGTCGAGATTCCTAGATG 57.090 45.455 0.00 0.00 0.00 2.90
3212 3360 2.139118 GACCTGCAGAAGAACACTGTC 58.861 52.381 17.39 6.75 37.64 3.51
3214 3362 1.517242 GGACCTGCAGAAGAACACTG 58.483 55.000 17.39 0.00 38.27 3.66
3221 3369 0.390472 GAGTTCGGGACCTGCAGAAG 60.390 60.000 17.39 1.02 0.00 2.85
3226 3374 1.021390 CATGTGAGTTCGGGACCTGC 61.021 60.000 0.00 0.00 0.00 4.85
3227 3375 1.021390 GCATGTGAGTTCGGGACCTG 61.021 60.000 0.00 0.00 0.00 4.00
3228 3376 1.296715 GCATGTGAGTTCGGGACCT 59.703 57.895 0.00 0.00 0.00 3.85
3229 3377 0.605319 TTGCATGTGAGTTCGGGACC 60.605 55.000 0.00 0.00 0.00 4.46
3230 3378 1.069227 GTTTGCATGTGAGTTCGGGAC 60.069 52.381 0.00 0.00 0.00 4.46
3235 3383 0.951558 ACCCGTTTGCATGTGAGTTC 59.048 50.000 0.00 0.00 0.00 3.01
3237 3385 0.179032 TCACCCGTTTGCATGTGAGT 60.179 50.000 0.00 0.00 33.09 3.41
3332 3480 4.624024 ACGAAATTTTGCATGCAGATGAAG 59.376 37.500 21.50 12.98 0.00 3.02
3350 3498 5.459768 CACAAATGTCATTCCATCACGAAA 58.540 37.500 0.00 0.00 0.00 3.46
3386 3536 7.827236 ACATGATCATTTTGGAGCATCAATTTT 59.173 29.630 5.16 0.00 41.62 1.82
3408 3558 5.168526 TCGTTGAGAACAGGAAAAACATG 57.831 39.130 0.00 0.00 36.29 3.21
3450 3600 5.297278 TGACTGTTTTACCAGCGTACAATTT 59.703 36.000 0.00 0.00 35.83 1.82
3451 3601 4.817464 TGACTGTTTTACCAGCGTACAATT 59.183 37.500 0.00 0.00 35.83 2.32
3452 3602 4.382291 TGACTGTTTTACCAGCGTACAAT 58.618 39.130 0.00 0.00 35.83 2.71
3458 3608 4.083324 ACATTGATGACTGTTTTACCAGCG 60.083 41.667 0.00 0.00 35.83 5.18
3471 3621 9.713740 GATCTCTTTGTGATAAACATTGATGAC 57.286 33.333 0.00 0.00 38.99 3.06
3498 3648 8.373048 ACGGTAAAATCCAAAAAGAAAAATCC 57.627 30.769 0.00 0.00 0.00 3.01
3530 3680 0.250234 TAGCGAGCTCAAATGCACCT 59.750 50.000 15.40 0.00 34.99 4.00
3575 3775 1.676006 ACCAAAAACACGCTCCAGAAG 59.324 47.619 0.00 0.00 0.00 2.85
3588 3788 3.629855 TCGAGATTGAAGCACACCAAAAA 59.370 39.130 0.00 0.00 0.00 1.94
3593 3793 3.126831 CCTATCGAGATTGAAGCACACC 58.873 50.000 0.00 0.00 0.00 4.16
3608 3808 2.607282 GGTGTCGAACTATGGCCTATCG 60.607 54.545 3.32 7.08 34.98 2.92
3629 3829 0.392193 GTGCTCCATGTCAGTCCAGG 60.392 60.000 0.00 0.00 0.00 4.45
3633 3833 0.737715 GTCGGTGCTCCATGTCAGTC 60.738 60.000 5.52 0.00 0.00 3.51
3641 3841 0.465460 AAAAGCTTGTCGGTGCTCCA 60.465 50.000 0.00 0.00 38.75 3.86
3650 3850 3.057946 GTCATCACCTCCAAAAGCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
3691 3891 3.243873 GCTCATCCTCCACGATCATGTTA 60.244 47.826 0.00 0.00 0.00 2.41
3695 3895 0.316522 CGCTCATCCTCCACGATCAT 59.683 55.000 0.00 0.00 0.00 2.45
3696 3896 1.037579 ACGCTCATCCTCCACGATCA 61.038 55.000 0.00 0.00 0.00 2.92
3697 3897 0.596083 CACGCTCATCCTCCACGATC 60.596 60.000 0.00 0.00 0.00 3.69
3698 3898 1.037579 TCACGCTCATCCTCCACGAT 61.038 55.000 0.00 0.00 0.00 3.73
3699 3899 1.037579 ATCACGCTCATCCTCCACGA 61.038 55.000 0.00 0.00 0.00 4.35
3724 3924 3.931907 TGGAACCCTTGGTCATAGATG 57.068 47.619 0.00 0.00 33.12 2.90
3730 3930 2.105821 CTGTAGTTGGAACCCTTGGTCA 59.894 50.000 0.00 0.00 33.12 4.02
3746 3946 2.231235 GCCCAACAATTTCACCCTGTAG 59.769 50.000 0.00 0.00 0.00 2.74
3750 3950 0.190815 AGGCCCAACAATTTCACCCT 59.809 50.000 0.00 0.00 0.00 4.34
3765 3965 1.973812 GGTTCTTGGTGCTCAGGCC 60.974 63.158 0.00 0.00 37.74 5.19
3770 3970 1.659098 CGTTATCGGTTCTTGGTGCTC 59.341 52.381 0.00 0.00 0.00 4.26
3779 3979 6.137415 TGAATTGTTCAAACGTTATCGGTTC 58.863 36.000 0.00 1.91 43.96 3.62
3854 4054 5.874810 TCTACATGTGCTCAACCAAGTAATC 59.125 40.000 9.11 0.00 0.00 1.75
3857 4057 4.283467 AGTCTACATGTGCTCAACCAAGTA 59.717 41.667 9.11 0.00 0.00 2.24
3869 4069 2.289631 TGCCAAGGTGAGTCTACATGTG 60.290 50.000 9.11 0.00 0.00 3.21
3876 4076 0.109342 CTGGTTGCCAAGGTGAGTCT 59.891 55.000 0.00 0.00 30.80 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.