Multiple sequence alignment - TraesCS7A01G536900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G536900 chr7A 100.000 4408 0 0 1 4408 714339482 714343889 0.000000e+00 8141.0
1 TraesCS7A01G536900 chr7A 82.891 1017 88 33 2654 3626 714317364 714316390 0.000000e+00 835.0
2 TraesCS7A01G536900 chr7A 100.000 96 0 0 3633 3728 714343012 714343107 1.260000e-40 178.0
3 TraesCS7A01G536900 chr7A 100.000 96 0 0 3531 3626 714343114 714343209 1.260000e-40 178.0
4 TraesCS7A01G536900 chr7A 82.895 76 7 5 2505 2577 538150999 538150927 3.680000e-06 63.9
5 TraesCS7A01G536900 chr7B 92.005 1651 69 22 735 2323 715716849 715715200 0.000000e+00 2259.0
6 TraesCS7A01G536900 chr7B 91.943 1328 49 17 2334 3626 715715142 715713838 0.000000e+00 1807.0
7 TraesCS7A01G536900 chr7B 87.783 794 48 15 3633 4403 715726250 715727017 0.000000e+00 883.0
8 TraesCS7A01G536900 chr7B 86.780 764 39 14 3633 4346 715713942 715713191 0.000000e+00 795.0
9 TraesCS7A01G536900 chr7B 88.506 609 54 8 1 599 715717642 715717040 0.000000e+00 723.0
10 TraesCS7A01G536900 chr7B 90.909 506 25 7 3132 3626 715725860 715726355 0.000000e+00 660.0
11 TraesCS7A01G536900 chr7B 92.275 233 12 5 2403 2630 715725629 715725860 4.250000e-85 326.0
12 TraesCS7A01G536900 chr7B 80.101 397 45 15 3739 4112 715572006 715571621 9.400000e-67 265.0
13 TraesCS7A01G536900 chr7B 97.403 77 2 0 4270 4346 715711629 715711553 9.950000e-27 132.0
14 TraesCS7A01G536900 chr7B 97.403 77 2 0 4270 4346 715712454 715712378 9.950000e-27 132.0
15 TraesCS7A01G536900 chr7B 75.839 149 22 10 2427 2568 484893427 484893568 3.680000e-06 63.9
16 TraesCS7A01G536900 chrUn 90.420 1618 67 28 771 2322 93134879 93133284 0.000000e+00 2049.0
17 TraesCS7A01G536900 chrUn 94.768 1338 29 14 2327 3632 93133244 93131916 0.000000e+00 2045.0
18 TraesCS7A01G536900 chrUn 90.829 796 29 11 3633 4403 93132017 93131241 0.000000e+00 1026.0
19 TraesCS7A01G536900 chrUn 89.412 340 26 6 2985 3324 93144820 93145149 1.900000e-113 420.0
20 TraesCS7A01G536900 chrUn 82.524 515 32 16 3633 4112 93145306 93145797 2.470000e-107 399.0
21 TraesCS7A01G536900 chrUn 83.411 428 63 7 1 424 93136823 93136400 1.490000e-104 390.0
22 TraesCS7A01G536900 chr7D 74.038 208 33 16 2427 2622 461957556 461957754 1.020000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G536900 chr7A 714339482 714343889 4407 False 2832.333333 8141 100.000000 1 4408 3 chr7A.!!$F1 4407
1 TraesCS7A01G536900 chr7A 714316390 714317364 974 True 835.000000 835 82.891000 2654 3626 1 chr7A.!!$R2 972
2 TraesCS7A01G536900 chr7B 715711553 715717642 6089 True 974.666667 2259 92.340000 1 4346 6 chr7B.!!$R2 4345
3 TraesCS7A01G536900 chr7B 715725629 715727017 1388 False 623.000000 883 90.322333 2403 4403 3 chr7B.!!$F2 2000
4 TraesCS7A01G536900 chrUn 93131241 93136823 5582 True 1377.500000 2049 89.857000 1 4403 4 chrUn.!!$R1 4402
5 TraesCS7A01G536900 chrUn 93144820 93145797 977 False 409.500000 420 85.968000 2985 4112 2 chrUn.!!$F1 1127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 2350 0.102120 CTCAGCTAAGCGAGTGGGAG 59.898 60.0 0.0 0.0 0.0 4.30 F
2077 3467 0.318784 GGGCATGTCGTCGTCTATCC 60.319 60.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2851 4361 0.315568 GGAACGGGATCGATGGAGAG 59.684 60.0 0.54 0.0 40.11 3.20 R
3654 5224 0.032813 CAACATCCATGGAGCCCCTT 60.033 55.0 21.33 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.288763 CGGTGCTGCCCTGTTTTAAAAT 60.289 45.455 3.52 0.00 0.00 1.82
84 85 1.741706 CAATGAAGCAGTACTGGCCTG 59.258 52.381 23.95 8.29 0.00 4.85
119 120 2.287608 CGTGGAAGCCTTGTTTCCTTTC 60.288 50.000 10.44 2.26 42.22 2.62
122 123 3.573967 TGGAAGCCTTGTTTCCTTTCATC 59.426 43.478 10.44 0.00 42.22 2.92
136 137 4.277423 TCCTTTCATCCGTTTCTTTTCCAC 59.723 41.667 0.00 0.00 0.00 4.02
387 397 9.868277 AGGATCATATATTTCTTTTAGAGCTCG 57.132 33.333 8.37 0.00 0.00 5.03
393 403 9.988815 ATATATTTCTTTTAGAGCTCGTGTCAT 57.011 29.630 8.37 0.00 0.00 3.06
403 413 4.130118 GAGCTCGTGTCATAATTTCCCAT 58.870 43.478 0.00 0.00 0.00 4.00
452 462 7.951530 TCAAATCTTGAATTGGCTTTCTTTC 57.048 32.000 0.00 0.00 36.59 2.62
492 502 5.540337 TCTTTGCCTATTCATACTCGATCCT 59.460 40.000 0.00 0.00 0.00 3.24
576 586 6.590234 ATTCATAGGTTCCAAACTTGAACC 57.410 37.500 13.02 13.02 46.30 3.62
599 609 9.601810 AACCTAGAAGATTTTGGTAAATTCCTT 57.398 29.630 0.00 0.00 34.16 3.36
611 621 8.652810 TTGGTAAATTCCTTATACGTAAGCTC 57.347 34.615 0.00 0.00 45.62 4.09
612 622 8.015185 TGGTAAATTCCTTATACGTAAGCTCT 57.985 34.615 0.00 0.00 45.62 4.09
617 627 8.535690 AATTCCTTATACGTAAGCTCTTATGC 57.464 34.615 0.00 0.00 45.62 3.14
619 629 5.537295 TCCTTATACGTAAGCTCTTATGCCA 59.463 40.000 0.00 0.00 45.62 4.92
620 630 6.041182 TCCTTATACGTAAGCTCTTATGCCAA 59.959 38.462 0.00 1.50 45.62 4.52
622 632 7.063544 CCTTATACGTAAGCTCTTATGCCAATC 59.936 40.741 0.00 0.00 45.62 2.67
625 635 3.876914 CGTAAGCTCTTATGCCAATCCAA 59.123 43.478 0.00 0.00 0.00 3.53
627 637 4.725790 AAGCTCTTATGCCAATCCAAAC 57.274 40.909 0.00 0.00 0.00 2.93
628 638 3.700538 AGCTCTTATGCCAATCCAAACA 58.299 40.909 0.00 0.00 0.00 2.83
629 639 4.284178 AGCTCTTATGCCAATCCAAACAT 58.716 39.130 0.00 0.00 0.00 2.71
630 640 4.340381 AGCTCTTATGCCAATCCAAACATC 59.660 41.667 0.00 0.00 0.00 3.06
631 641 4.500375 GCTCTTATGCCAATCCAAACATCC 60.500 45.833 0.00 0.00 0.00 3.51
632 642 4.608269 TCTTATGCCAATCCAAACATCCA 58.392 39.130 0.00 0.00 0.00 3.41
633 643 5.210430 TCTTATGCCAATCCAAACATCCAT 58.790 37.500 0.00 0.00 0.00 3.41
634 644 6.372104 TCTTATGCCAATCCAAACATCCATA 58.628 36.000 0.00 0.00 0.00 2.74
635 645 7.011994 TCTTATGCCAATCCAAACATCCATAT 58.988 34.615 0.00 0.00 0.00 1.78
636 646 8.169393 TCTTATGCCAATCCAAACATCCATATA 58.831 33.333 0.00 0.00 0.00 0.86
637 647 6.845758 ATGCCAATCCAAACATCCATATAG 57.154 37.500 0.00 0.00 0.00 1.31
678 688 8.700973 ACTTGTTAAATTGGTGTTATTTGGAGT 58.299 29.630 0.00 0.00 0.00 3.85
679 689 9.541143 CTTGTTAAATTGGTGTTATTTGGAGTT 57.459 29.630 0.00 0.00 0.00 3.01
680 690 9.892130 TTGTTAAATTGGTGTTATTTGGAGTTT 57.108 25.926 0.00 0.00 0.00 2.66
681 691 9.535878 TGTTAAATTGGTGTTATTTGGAGTTTC 57.464 29.630 0.00 0.00 0.00 2.78
682 692 9.535878 GTTAAATTGGTGTTATTTGGAGTTTCA 57.464 29.630 0.00 0.00 0.00 2.69
685 695 9.625747 AAATTGGTGTTATTTGGAGTTTCATTT 57.374 25.926 0.00 0.00 0.00 2.32
686 696 8.606040 ATTGGTGTTATTTGGAGTTTCATTTG 57.394 30.769 0.00 0.00 0.00 2.32
687 697 5.988561 TGGTGTTATTTGGAGTTTCATTTGC 59.011 36.000 0.00 0.00 0.00 3.68
694 704 6.419980 TTTGGAGTTTCATTTGCTGTTTTG 57.580 33.333 0.00 0.00 0.00 2.44
701 711 4.870123 TCATTTGCTGTTTTGCCTATGT 57.130 36.364 0.00 0.00 0.00 2.29
703 713 4.523943 TCATTTGCTGTTTTGCCTATGTCT 59.476 37.500 0.00 0.00 0.00 3.41
709 719 4.455877 GCTGTTTTGCCTATGTCTACTTGT 59.544 41.667 0.00 0.00 0.00 3.16
711 721 6.316390 GCTGTTTTGCCTATGTCTACTTGTAT 59.684 38.462 0.00 0.00 0.00 2.29
712 722 7.609760 TGTTTTGCCTATGTCTACTTGTATG 57.390 36.000 0.00 0.00 0.00 2.39
718 728 9.929180 TTGCCTATGTCTACTTGTATGAATATC 57.071 33.333 0.00 0.00 0.00 1.63
780 2136 1.847999 GTGCGCCATCATTTCAATTCG 59.152 47.619 4.18 0.00 0.00 3.34
786 2142 4.496895 CGCCATCATTTCAATTCGAACTTC 59.503 41.667 0.00 0.00 31.73 3.01
959 2317 2.580276 GCTCTGCTCAGCTCAGCT 59.420 61.111 12.05 0.00 40.39 4.24
960 2318 1.519898 GCTCTGCTCAGCTCAGCTC 60.520 63.158 12.05 0.00 40.39 4.09
961 2319 1.891616 CTCTGCTCAGCTCAGCTCA 59.108 57.895 12.05 0.00 40.39 4.26
962 2320 0.179121 CTCTGCTCAGCTCAGCTCAG 60.179 60.000 12.05 1.02 40.39 3.35
969 2327 3.703547 GCTCAGCTCAGCTAAGCG 58.296 61.111 5.90 0.00 40.29 4.68
977 2350 0.102120 CTCAGCTAAGCGAGTGGGAG 59.898 60.000 0.00 0.00 0.00 4.30
1269 2642 4.838152 CAGGCCATGTCCGACGGG 62.838 72.222 15.25 0.00 0.00 5.28
1290 2663 2.278206 CTCGTCCTCGACATGCGG 60.278 66.667 9.16 0.00 41.35 5.69
1455 2828 1.681327 GGACTACCTCCGGCTCACA 60.681 63.158 0.00 0.00 0.00 3.58
1608 2981 1.801913 CGACCTCTTCTTCGCCGTG 60.802 63.158 0.00 0.00 0.00 4.94
1681 3054 3.347405 CCGCGCCACAAACGGTAA 61.347 61.111 0.00 0.00 42.01 2.85
1695 3068 1.003580 ACGGTAACTCCTACGACTCCA 59.996 52.381 0.00 0.00 0.00 3.86
2004 3394 1.071299 CTGTACCAGCACCAGCACA 59.929 57.895 0.00 0.00 45.49 4.57
2012 3402 4.034258 CACCAGCACAAGCAGCCG 62.034 66.667 0.00 0.00 45.49 5.52
2054 3444 1.293498 CCACTGGCGCTGTACTTCT 59.707 57.895 7.64 0.00 0.00 2.85
2058 3448 2.202756 GGCGCTGTACTTCTCCGG 60.203 66.667 7.64 0.00 0.00 5.14
2061 3451 2.187163 GCTGTACTTCTCCGGGGC 59.813 66.667 0.00 0.00 0.00 5.80
2077 3467 0.318784 GGGCATGTCGTCGTCTATCC 60.319 60.000 0.00 0.00 0.00 2.59
2078 3468 0.669077 GGCATGTCGTCGTCTATCCT 59.331 55.000 0.00 0.00 0.00 3.24
2095 3485 1.078214 CTCCGCTGGATTCTTGGCA 60.078 57.895 0.00 0.00 0.00 4.92
2098 3488 1.675310 CGCTGGATTCTTGGCACCA 60.675 57.895 0.00 0.00 0.00 4.17
2174 3575 1.065273 GCCAGCAATCCAGCAATCG 59.935 57.895 0.00 0.00 36.85 3.34
2175 3576 1.065273 CCAGCAATCCAGCAATCGC 59.935 57.895 0.00 0.00 36.85 4.58
2213 3622 3.860125 CGTGCGTACAATGCGGGG 61.860 66.667 4.09 0.00 31.36 5.73
2233 3652 3.302347 GAGCCCACCTCACCTCACG 62.302 68.421 0.00 0.00 40.45 4.35
2274 3709 1.849976 GAACAGCTCACACCAGCAGC 61.850 60.000 0.00 0.00 42.40 5.25
2275 3710 3.420606 CAGCTCACACCAGCAGCG 61.421 66.667 0.00 0.00 42.40 5.18
2349 3832 2.360350 CCTGCCCGTGCTCATGTT 60.360 61.111 0.00 0.00 38.71 2.71
2359 3842 3.489059 CCGTGCTCATGTTTGTTTGTTCT 60.489 43.478 0.00 0.00 0.00 3.01
2645 4135 3.196469 TCAAGAGCAAGTGAGTATCCCAG 59.804 47.826 0.00 0.00 0.00 4.45
2646 4136 2.114616 AGAGCAAGTGAGTATCCCAGG 58.885 52.381 0.00 0.00 0.00 4.45
2658 4151 1.553690 ATCCCAGGACACTCCAACCG 61.554 60.000 0.00 0.00 39.61 4.44
2670 4163 1.745115 CCAACCGATGACGCACCAT 60.745 57.895 0.00 0.00 38.29 3.55
3026 4568 3.736252 CCATTGTTTACGATAGGCTCTCG 59.264 47.826 19.18 19.18 41.77 4.04
3206 4763 3.853330 CAGAACGGCGCCATCGTG 61.853 66.667 28.98 17.91 40.96 4.35
3452 5018 3.144506 GGTGGTGGATGATGATGATGAC 58.855 50.000 0.00 0.00 0.00 3.06
3574 5144 1.097547 GGGCTCCATGGATGTTGTCG 61.098 60.000 16.63 2.35 0.00 4.35
3582 5152 3.605634 CATGGATGTTGTCGTAGGGAAA 58.394 45.455 0.00 0.00 0.00 3.13
3583 5153 3.328382 TGGATGTTGTCGTAGGGAAAG 57.672 47.619 0.00 0.00 0.00 2.62
3584 5154 2.027561 TGGATGTTGTCGTAGGGAAAGG 60.028 50.000 0.00 0.00 0.00 3.11
3585 5155 2.629051 GATGTTGTCGTAGGGAAAGGG 58.371 52.381 0.00 0.00 0.00 3.95
3586 5156 1.426751 TGTTGTCGTAGGGAAAGGGT 58.573 50.000 0.00 0.00 0.00 4.34
3587 5157 1.770061 TGTTGTCGTAGGGAAAGGGTT 59.230 47.619 0.00 0.00 0.00 4.11
3588 5158 2.148768 GTTGTCGTAGGGAAAGGGTTG 58.851 52.381 0.00 0.00 0.00 3.77
3589 5159 0.035739 TGTCGTAGGGAAAGGGTTGC 59.964 55.000 0.00 0.00 0.00 4.17
3590 5160 0.035739 GTCGTAGGGAAAGGGTTGCA 59.964 55.000 0.00 0.00 0.00 4.08
3591 5161 0.766131 TCGTAGGGAAAGGGTTGCAA 59.234 50.000 0.00 0.00 0.00 4.08
3592 5162 1.143277 TCGTAGGGAAAGGGTTGCAAA 59.857 47.619 0.00 0.00 0.00 3.68
3593 5163 1.539827 CGTAGGGAAAGGGTTGCAAAG 59.460 52.381 0.00 0.00 0.00 2.77
3594 5164 2.812613 CGTAGGGAAAGGGTTGCAAAGA 60.813 50.000 0.00 0.00 0.00 2.52
3595 5165 2.470057 AGGGAAAGGGTTGCAAAGAA 57.530 45.000 0.00 0.00 0.00 2.52
3596 5166 2.758130 AGGGAAAGGGTTGCAAAGAAA 58.242 42.857 0.00 0.00 0.00 2.52
3597 5167 3.111484 AGGGAAAGGGTTGCAAAGAAAA 58.889 40.909 0.00 0.00 0.00 2.29
3598 5168 3.118408 AGGGAAAGGGTTGCAAAGAAAAC 60.118 43.478 0.00 0.00 0.00 2.43
3599 5169 3.202906 GGAAAGGGTTGCAAAGAAAACC 58.797 45.455 0.00 0.00 44.31 3.27
3600 5170 3.369997 GGAAAGGGTTGCAAAGAAAACCA 60.370 43.478 0.00 0.00 46.41 3.67
3601 5171 3.990959 AAGGGTTGCAAAGAAAACCAA 57.009 38.095 0.00 0.00 46.41 3.67
3602 5172 3.990959 AGGGTTGCAAAGAAAACCAAA 57.009 38.095 0.00 0.00 46.41 3.28
3603 5173 3.872696 AGGGTTGCAAAGAAAACCAAAG 58.127 40.909 0.00 0.00 46.41 2.77
3604 5174 3.517500 AGGGTTGCAAAGAAAACCAAAGA 59.482 39.130 0.00 0.00 46.41 2.52
3605 5175 4.164030 AGGGTTGCAAAGAAAACCAAAGAT 59.836 37.500 0.00 0.00 46.41 2.40
3606 5176 4.273235 GGGTTGCAAAGAAAACCAAAGATG 59.727 41.667 0.00 0.00 46.41 2.90
3607 5177 4.875536 GGTTGCAAAGAAAACCAAAGATGT 59.124 37.500 0.00 0.00 44.41 3.06
3608 5178 5.006649 GGTTGCAAAGAAAACCAAAGATGTC 59.993 40.000 0.00 0.00 44.41 3.06
3609 5179 5.336150 TGCAAAGAAAACCAAAGATGTCA 57.664 34.783 0.00 0.00 0.00 3.58
3610 5180 5.108517 TGCAAAGAAAACCAAAGATGTCAC 58.891 37.500 0.00 0.00 0.00 3.67
3611 5181 4.507756 GCAAAGAAAACCAAAGATGTCACC 59.492 41.667 0.00 0.00 0.00 4.02
3612 5182 5.682212 GCAAAGAAAACCAAAGATGTCACCT 60.682 40.000 0.00 0.00 0.00 4.00
3613 5183 6.340522 CAAAGAAAACCAAAGATGTCACCTT 58.659 36.000 0.00 0.00 0.00 3.50
3614 5184 6.544928 AAGAAAACCAAAGATGTCACCTTT 57.455 33.333 0.00 0.00 34.46 3.11
3615 5185 6.544928 AGAAAACCAAAGATGTCACCTTTT 57.455 33.333 0.00 0.00 32.04 2.27
3616 5186 6.573434 AGAAAACCAAAGATGTCACCTTTTC 58.427 36.000 0.00 0.00 32.04 2.29
3617 5187 4.937201 AACCAAAGATGTCACCTTTTCC 57.063 40.909 0.00 0.00 32.04 3.13
3618 5188 4.184649 ACCAAAGATGTCACCTTTTCCT 57.815 40.909 0.00 0.00 32.04 3.36
3619 5189 4.145052 ACCAAAGATGTCACCTTTTCCTC 58.855 43.478 0.00 0.00 32.04 3.71
3620 5190 4.144297 CCAAAGATGTCACCTTTTCCTCA 58.856 43.478 0.00 0.00 32.04 3.86
3621 5191 4.768968 CCAAAGATGTCACCTTTTCCTCAT 59.231 41.667 0.00 0.00 32.04 2.90
3622 5192 5.105997 CCAAAGATGTCACCTTTTCCTCATC 60.106 44.000 0.00 0.00 32.04 2.92
3623 5193 4.916041 AGATGTCACCTTTTCCTCATCA 57.084 40.909 0.00 0.00 35.56 3.07
3624 5194 4.841422 AGATGTCACCTTTTCCTCATCAG 58.159 43.478 0.00 0.00 35.56 2.90
3625 5195 3.423539 TGTCACCTTTTCCTCATCAGG 57.576 47.619 0.00 0.00 42.01 3.86
3626 5196 2.040278 TGTCACCTTTTCCTCATCAGGG 59.960 50.000 0.00 0.00 40.80 4.45
3627 5197 1.635487 TCACCTTTTCCTCATCAGGGG 59.365 52.381 0.00 0.00 40.80 4.79
3628 5198 0.332972 ACCTTTTCCTCATCAGGGGC 59.667 55.000 0.00 0.00 40.80 5.80
3629 5199 0.396278 CCTTTTCCTCATCAGGGGCC 60.396 60.000 0.00 0.00 40.80 5.80
3630 5200 0.749454 CTTTTCCTCATCAGGGGCCG 60.749 60.000 0.00 0.00 40.80 6.13
3631 5201 2.210144 TTTTCCTCATCAGGGGCCGG 62.210 60.000 0.00 0.00 40.80 6.13
3632 5202 3.943137 TTCCTCATCAGGGGCCGGT 62.943 63.158 1.90 0.00 40.80 5.28
3633 5203 3.411517 CCTCATCAGGGGCCGGTT 61.412 66.667 1.90 0.00 35.89 4.44
3634 5204 2.070039 CCTCATCAGGGGCCGGTTA 61.070 63.158 1.90 0.00 35.89 2.85
3635 5205 1.447643 CTCATCAGGGGCCGGTTAG 59.552 63.158 1.90 0.00 0.00 2.34
3636 5206 2.044806 CTCATCAGGGGCCGGTTAGG 62.045 65.000 1.90 0.00 44.97 2.69
3646 5216 2.780595 CCGGTTAGGCACATTGAGG 58.219 57.895 0.00 0.00 0.00 3.86
3647 5217 0.748005 CCGGTTAGGCACATTGAGGG 60.748 60.000 0.00 0.00 0.00 4.30
3648 5218 0.748005 CGGTTAGGCACATTGAGGGG 60.748 60.000 0.00 0.00 0.00 4.79
3649 5219 0.623723 GGTTAGGCACATTGAGGGGA 59.376 55.000 0.00 0.00 0.00 4.81
3650 5220 1.682087 GGTTAGGCACATTGAGGGGAC 60.682 57.143 0.00 0.00 0.00 4.46
3651 5221 1.004277 GTTAGGCACATTGAGGGGACA 59.996 52.381 0.00 0.00 0.00 4.02
3652 5222 1.367346 TAGGCACATTGAGGGGACAA 58.633 50.000 0.00 0.00 0.00 3.18
3653 5223 0.482446 AGGCACATTGAGGGGACAAA 59.518 50.000 0.00 0.00 33.44 2.83
3654 5224 1.133199 AGGCACATTGAGGGGACAAAA 60.133 47.619 0.00 0.00 33.44 2.44
3655 5225 1.691434 GGCACATTGAGGGGACAAAAA 59.309 47.619 0.00 0.00 33.44 1.94
3656 5226 2.289010 GGCACATTGAGGGGACAAAAAG 60.289 50.000 0.00 0.00 33.44 2.27
3657 5227 2.289010 GCACATTGAGGGGACAAAAAGG 60.289 50.000 0.00 0.00 33.44 3.11
3658 5228 2.299867 CACATTGAGGGGACAAAAAGGG 59.700 50.000 0.00 0.00 33.44 3.95
3659 5229 1.901833 CATTGAGGGGACAAAAAGGGG 59.098 52.381 0.00 0.00 33.44 4.79
3660 5230 0.471022 TTGAGGGGACAAAAAGGGGC 60.471 55.000 0.00 0.00 0.00 5.80
3661 5231 1.368268 TGAGGGGACAAAAAGGGGCT 61.368 55.000 0.00 0.00 0.00 5.19
3662 5232 0.612174 GAGGGGACAAAAAGGGGCTC 60.612 60.000 0.00 0.00 0.00 4.70
3663 5233 1.609501 GGGGACAAAAAGGGGCTCC 60.610 63.158 0.00 0.00 0.00 4.70
3664 5234 1.155155 GGGACAAAAAGGGGCTCCA 59.845 57.895 4.79 0.00 34.83 3.86
3665 5235 0.252239 GGGACAAAAAGGGGCTCCAT 60.252 55.000 4.79 0.00 34.83 3.41
3666 5236 0.897621 GGACAAAAAGGGGCTCCATG 59.102 55.000 4.79 0.00 34.83 3.66
3667 5237 0.897621 GACAAAAAGGGGCTCCATGG 59.102 55.000 4.79 4.97 34.83 3.66
3668 5238 0.486879 ACAAAAAGGGGCTCCATGGA 59.513 50.000 15.27 15.27 34.83 3.41
3669 5239 1.079323 ACAAAAAGGGGCTCCATGGAT 59.921 47.619 16.63 0.00 34.83 3.41
3670 5240 1.483415 CAAAAAGGGGCTCCATGGATG 59.517 52.381 16.63 10.72 34.83 3.51
3671 5241 0.712380 AAAAGGGGCTCCATGGATGT 59.288 50.000 16.63 0.00 34.83 3.06
3684 5254 3.605634 CATGGATGTTGTCGTAGGGAAA 58.394 45.455 0.00 0.00 0.00 3.13
3687 5257 2.629051 GATGTTGTCGTAGGGAAAGGG 58.371 52.381 0.00 0.00 0.00 3.95
3801 5371 1.438651 TAGTTCATGGAAGCGTGCAC 58.561 50.000 6.82 6.82 0.00 4.57
3820 5390 2.673368 CACCAAGCCGTGAACTCTAATC 59.327 50.000 0.00 0.00 35.68 1.75
3924 5526 1.316651 GCTTCATCTTCCTGGCCATC 58.683 55.000 5.51 0.00 0.00 3.51
3949 5551 1.962807 TCCCACAAGCCACATCAAAAG 59.037 47.619 0.00 0.00 0.00 2.27
3982 5585 4.333926 GGAAATCCCTCTGAAATGAACTCG 59.666 45.833 0.00 0.00 0.00 4.18
3992 5595 2.467566 AATGAACTCGTACCCACCAC 57.532 50.000 0.00 0.00 0.00 4.16
4057 5674 9.657419 AATTTCCCTATTCAAATTGACATTGTC 57.343 29.630 9.93 9.93 32.20 3.18
4083 5700 7.416664 CCAAGTATTATTTGTGTTCCTCCATGG 60.417 40.741 4.97 4.97 37.10 3.66
4149 5783 1.626321 TCTAGATTTTGCACCGGGTCA 59.374 47.619 6.32 0.00 0.00 4.02
4265 5900 5.220931 GCTGTTGTTGAGGATAATGATGGTC 60.221 44.000 0.00 0.00 0.00 4.02
4353 5988 7.730364 AGTTTATTATTTGGCTCCATCTACG 57.270 36.000 0.00 0.00 0.00 3.51
4354 5989 6.204882 AGTTTATTATTTGGCTCCATCTACGC 59.795 38.462 0.00 0.00 0.00 4.42
4369 6398 2.364324 TCTACGCCTCTCTCTCTCTCTC 59.636 54.545 0.00 0.00 0.00 3.20
4403 6812 7.168302 CCATGCACGTGTTTGAACTTTTATAAA 59.832 33.333 18.38 0.00 0.00 1.40
4404 6813 8.698854 CATGCACGTGTTTGAACTTTTATAAAT 58.301 29.630 18.38 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.166531 GGGCAGCACCGTTATCCATC 61.167 60.000 0.00 0.00 40.62 3.51
40 41 0.466555 TAAAACAGGGCAGCACCGTT 60.467 50.000 0.00 0.00 40.62 4.44
45 46 4.679373 TTGATTTTAAAACAGGGCAGCA 57.321 36.364 1.97 0.00 0.00 4.41
63 64 1.630369 AGGCCAGTACTGCTTCATTGA 59.370 47.619 17.86 0.00 0.00 2.57
84 85 0.602638 TCCACGTGTCACAATCTGGC 60.603 55.000 15.65 0.00 0.00 4.85
85 86 1.800586 CTTCCACGTGTCACAATCTGG 59.199 52.381 15.65 2.13 0.00 3.86
119 120 3.980646 TGTGTGGAAAAGAAACGGATG 57.019 42.857 0.00 0.00 0.00 3.51
122 123 3.245048 GCATTTGTGTGGAAAAGAAACGG 59.755 43.478 0.00 0.00 0.00 4.44
136 137 7.442062 AGAATTTTGGAAGTTTAGGCATTTGTG 59.558 33.333 0.00 0.00 0.00 3.33
371 381 8.723942 ATTATGACACGAGCTCTAAAAGAAAT 57.276 30.769 12.85 1.86 0.00 2.17
377 387 5.815740 GGGAAATTATGACACGAGCTCTAAA 59.184 40.000 12.85 0.00 0.00 1.85
429 439 7.718272 TGAAAGAAAGCCAATTCAAGATTTG 57.282 32.000 0.00 0.00 0.00 2.32
470 480 5.808366 AGGATCGAGTATGAATAGGCAAA 57.192 39.130 0.00 0.00 0.00 3.68
541 551 8.915813 TGGAACCTATGAATATATGATCCAGA 57.084 34.615 0.00 0.00 34.09 3.86
542 552 9.964354 TTTGGAACCTATGAATATATGATCCAG 57.036 33.333 0.00 0.00 37.52 3.86
599 609 6.014925 TGGATTGGCATAAGAGCTTACGTATA 60.015 38.462 0.00 0.00 34.17 1.47
604 614 5.125417 TGTTTGGATTGGCATAAGAGCTTAC 59.875 40.000 0.00 0.00 34.17 2.34
609 619 4.646040 TGGATGTTTGGATTGGCATAAGAG 59.354 41.667 0.00 0.00 0.00 2.85
611 621 5.540400 ATGGATGTTTGGATTGGCATAAG 57.460 39.130 0.00 0.00 0.00 1.73
612 622 8.169393 TCTATATGGATGTTTGGATTGGCATAA 58.831 33.333 0.00 0.00 0.00 1.90
615 625 5.951204 TCTATATGGATGTTTGGATTGGCA 58.049 37.500 0.00 0.00 0.00 4.92
616 626 6.860080 CATCTATATGGATGTTTGGATTGGC 58.140 40.000 18.34 0.00 38.49 4.52
652 662 8.700973 ACTCCAAATAACACCAATTTAACAAGT 58.299 29.630 0.00 0.00 0.00 3.16
653 663 9.541143 AACTCCAAATAACACCAATTTAACAAG 57.459 29.630 0.00 0.00 0.00 3.16
660 670 9.054922 CAAATGAAACTCCAAATAACACCAATT 57.945 29.630 0.00 0.00 0.00 2.32
662 672 6.481644 GCAAATGAAACTCCAAATAACACCAA 59.518 34.615 0.00 0.00 0.00 3.67
664 674 6.146021 CAGCAAATGAAACTCCAAATAACACC 59.854 38.462 0.00 0.00 0.00 4.16
665 675 6.701400 ACAGCAAATGAAACTCCAAATAACAC 59.299 34.615 0.00 0.00 0.00 3.32
667 677 7.713764 AACAGCAAATGAAACTCCAAATAAC 57.286 32.000 0.00 0.00 0.00 1.89
668 678 8.610896 CAAAACAGCAAATGAAACTCCAAATAA 58.389 29.630 0.00 0.00 0.00 1.40
669 679 7.254727 GCAAAACAGCAAATGAAACTCCAAATA 60.255 33.333 0.00 0.00 0.00 1.40
670 680 6.458615 GCAAAACAGCAAATGAAACTCCAAAT 60.459 34.615 0.00 0.00 0.00 2.32
671 681 5.163774 GCAAAACAGCAAATGAAACTCCAAA 60.164 36.000 0.00 0.00 0.00 3.28
672 682 4.332268 GCAAAACAGCAAATGAAACTCCAA 59.668 37.500 0.00 0.00 0.00 3.53
673 683 3.870419 GCAAAACAGCAAATGAAACTCCA 59.130 39.130 0.00 0.00 0.00 3.86
674 684 3.248363 GGCAAAACAGCAAATGAAACTCC 59.752 43.478 0.00 0.00 35.83 3.85
675 685 4.122046 AGGCAAAACAGCAAATGAAACTC 58.878 39.130 0.00 0.00 35.83 3.01
676 686 4.141233 AGGCAAAACAGCAAATGAAACT 57.859 36.364 0.00 0.00 35.83 2.66
677 687 5.466393 ACATAGGCAAAACAGCAAATGAAAC 59.534 36.000 0.00 0.00 34.32 2.78
678 688 5.609423 ACATAGGCAAAACAGCAAATGAAA 58.391 33.333 0.00 0.00 34.32 2.69
679 689 5.010922 AGACATAGGCAAAACAGCAAATGAA 59.989 36.000 0.00 0.00 34.32 2.57
680 690 4.523943 AGACATAGGCAAAACAGCAAATGA 59.476 37.500 0.00 0.00 34.32 2.57
681 691 4.813027 AGACATAGGCAAAACAGCAAATG 58.187 39.130 0.00 0.00 35.52 2.32
682 692 5.711976 AGTAGACATAGGCAAAACAGCAAAT 59.288 36.000 0.00 0.00 35.83 2.32
683 693 5.070001 AGTAGACATAGGCAAAACAGCAAA 58.930 37.500 0.00 0.00 35.83 3.68
684 694 4.651778 AGTAGACATAGGCAAAACAGCAA 58.348 39.130 0.00 0.00 35.83 3.91
685 695 4.286297 AGTAGACATAGGCAAAACAGCA 57.714 40.909 0.00 0.00 35.83 4.41
686 696 4.455877 ACAAGTAGACATAGGCAAAACAGC 59.544 41.667 0.00 0.00 0.00 4.40
687 697 7.549134 TCATACAAGTAGACATAGGCAAAACAG 59.451 37.037 0.00 0.00 0.00 3.16
727 737 9.836864 GGCAATCTTTGGAGGATTAAAATTAAT 57.163 29.630 0.00 0.00 36.14 1.40
747 2103 3.017323 CGCACCATCTCGGCAATC 58.983 61.111 0.00 0.00 39.03 2.67
959 2317 1.323271 CCTCCCACTCGCTTAGCTGA 61.323 60.000 1.76 0.61 0.00 4.26
960 2318 1.142748 CCTCCCACTCGCTTAGCTG 59.857 63.158 1.76 0.00 0.00 4.24
961 2319 1.000486 TCCTCCCACTCGCTTAGCT 60.000 57.895 1.76 0.00 0.00 3.32
962 2320 1.038130 TCTCCTCCCACTCGCTTAGC 61.038 60.000 0.00 0.00 0.00 3.09
963 2321 1.407258 CTTCTCCTCCCACTCGCTTAG 59.593 57.143 0.00 0.00 0.00 2.18
964 2322 1.475403 CTTCTCCTCCCACTCGCTTA 58.525 55.000 0.00 0.00 0.00 3.09
965 2323 1.893919 GCTTCTCCTCCCACTCGCTT 61.894 60.000 0.00 0.00 0.00 4.68
966 2324 2.355193 GCTTCTCCTCCCACTCGCT 61.355 63.158 0.00 0.00 0.00 4.93
967 2325 2.185608 GCTTCTCCTCCCACTCGC 59.814 66.667 0.00 0.00 0.00 5.03
968 2326 2.492090 CGCTTCTCCTCCCACTCG 59.508 66.667 0.00 0.00 0.00 4.18
969 2327 1.893919 AAGCGCTTCTCCTCCCACTC 61.894 60.000 18.98 0.00 0.00 3.51
1681 3054 1.685491 GGGATGTGGAGTCGTAGGAGT 60.685 57.143 0.00 0.00 0.00 3.85
1695 3068 1.051812 GACGATGAGGATGGGGATGT 58.948 55.000 0.00 0.00 0.00 3.06
1743 3133 2.594303 CGCCCACTTCACCTGCAA 60.594 61.111 0.00 0.00 0.00 4.08
2012 3402 1.975363 CTACCTCGTCCACGTCGTCC 61.975 65.000 0.00 0.00 40.80 4.79
2058 3448 0.318784 GGATAGACGACGACATGCCC 60.319 60.000 0.00 0.00 0.00 5.36
2061 3451 1.069838 CGGAGGATAGACGACGACATG 60.070 57.143 0.00 0.00 0.00 3.21
2077 3467 1.078214 TGCCAAGAATCCAGCGGAG 60.078 57.895 3.76 0.00 34.05 4.63
2078 3468 1.377202 GTGCCAAGAATCCAGCGGA 60.377 57.895 0.00 0.00 35.55 5.54
2213 3622 4.459089 GAGGTGAGGTGGGCTCGC 62.459 72.222 0.00 0.00 0.00 5.03
2233 3652 1.671379 GGGGACAAAGGAGACGTGC 60.671 63.158 0.00 0.00 0.00 5.34
2349 3832 2.816672 TCTGCACACACAGAACAAACAA 59.183 40.909 0.00 0.00 43.59 2.83
2359 3842 1.376086 CCCATCCTCTGCACACACA 59.624 57.895 0.00 0.00 0.00 3.72
2645 4135 0.736325 CGTCATCGGTTGGAGTGTCC 60.736 60.000 0.00 0.00 36.96 4.02
2646 4136 1.352156 GCGTCATCGGTTGGAGTGTC 61.352 60.000 0.00 0.00 37.56 3.67
2658 4151 0.749649 AGGAGAGATGGTGCGTCATC 59.250 55.000 10.10 10.10 42.73 2.92
2670 4163 1.209019 GCAATCCAAGCAGAGGAGAGA 59.791 52.381 0.00 0.00 38.83 3.10
2851 4361 0.315568 GGAACGGGATCGATGGAGAG 59.684 60.000 0.54 0.00 40.11 3.20
2950 4460 1.357258 CTGAGTGAGACGTGCATGGC 61.357 60.000 11.36 7.41 0.00 4.40
3026 4568 4.922103 ACGATACGACAAAGGAAGAAGAAC 59.078 41.667 0.00 0.00 0.00 3.01
3387 4947 1.438562 TATGATCGGTCGGTTCGCGA 61.439 55.000 3.71 3.71 0.00 5.87
3388 4948 0.997226 CTATGATCGGTCGGTTCGCG 60.997 60.000 0.00 0.00 0.00 5.87
3389 4949 1.276145 GCTATGATCGGTCGGTTCGC 61.276 60.000 0.00 0.00 0.00 4.70
3452 5018 3.919197 CGAGATCTTCATCACCATCATCG 59.081 47.826 0.00 0.00 0.00 3.84
3574 5144 2.871453 TCTTTGCAACCCTTTCCCTAC 58.129 47.619 0.00 0.00 0.00 3.18
3582 5152 3.517500 TCTTTGGTTTTCTTTGCAACCCT 59.482 39.130 0.00 0.00 41.73 4.34
3583 5153 3.867857 TCTTTGGTTTTCTTTGCAACCC 58.132 40.909 0.00 0.00 41.73 4.11
3584 5154 4.875536 ACATCTTTGGTTTTCTTTGCAACC 59.124 37.500 0.00 0.00 42.61 3.77
3585 5155 5.580297 TGACATCTTTGGTTTTCTTTGCAAC 59.420 36.000 0.00 0.00 0.00 4.17
3586 5156 5.580297 GTGACATCTTTGGTTTTCTTTGCAA 59.420 36.000 0.00 0.00 0.00 4.08
3587 5157 5.108517 GTGACATCTTTGGTTTTCTTTGCA 58.891 37.500 0.00 0.00 0.00 4.08
3588 5158 4.507756 GGTGACATCTTTGGTTTTCTTTGC 59.492 41.667 0.00 0.00 0.00 3.68
3589 5159 5.906073 AGGTGACATCTTTGGTTTTCTTTG 58.094 37.500 0.00 0.00 0.00 2.77
3590 5160 6.544928 AAGGTGACATCTTTGGTTTTCTTT 57.455 33.333 0.00 0.00 0.00 2.52
3591 5161 6.544928 AAAGGTGACATCTTTGGTTTTCTT 57.455 33.333 12.95 0.00 33.68 2.52
3592 5162 6.406961 GGAAAAGGTGACATCTTTGGTTTTCT 60.407 38.462 14.38 0.00 34.99 2.52
3593 5163 5.753438 GGAAAAGGTGACATCTTTGGTTTTC 59.247 40.000 14.38 7.71 34.99 2.29
3594 5164 5.425217 AGGAAAAGGTGACATCTTTGGTTTT 59.575 36.000 14.38 0.00 34.99 2.43
3595 5165 4.962362 AGGAAAAGGTGACATCTTTGGTTT 59.038 37.500 14.38 0.00 34.99 3.27
3596 5166 4.546674 AGGAAAAGGTGACATCTTTGGTT 58.453 39.130 14.38 0.00 34.99 3.67
3597 5167 4.145052 GAGGAAAAGGTGACATCTTTGGT 58.855 43.478 14.38 0.00 34.99 3.67
3598 5168 4.144297 TGAGGAAAAGGTGACATCTTTGG 58.856 43.478 14.38 0.00 34.99 3.28
3599 5169 5.474532 TGATGAGGAAAAGGTGACATCTTTG 59.525 40.000 14.38 0.00 34.99 2.77
3600 5170 5.634118 TGATGAGGAAAAGGTGACATCTTT 58.366 37.500 7.93 7.93 36.25 2.52
3601 5171 5.246981 TGATGAGGAAAAGGTGACATCTT 57.753 39.130 0.00 0.00 36.25 2.40
3602 5172 4.324099 CCTGATGAGGAAAAGGTGACATCT 60.324 45.833 0.00 0.00 42.93 2.90
3603 5173 3.944015 CCTGATGAGGAAAAGGTGACATC 59.056 47.826 0.00 0.00 42.93 3.06
3604 5174 3.308688 CCCTGATGAGGAAAAGGTGACAT 60.309 47.826 0.00 0.00 42.93 3.06
3605 5175 2.040278 CCCTGATGAGGAAAAGGTGACA 59.960 50.000 0.00 0.00 42.93 3.58
3606 5176 2.619074 CCCCTGATGAGGAAAAGGTGAC 60.619 54.545 0.00 0.00 42.93 3.67
3607 5177 1.635487 CCCCTGATGAGGAAAAGGTGA 59.365 52.381 0.00 0.00 42.93 4.02
3608 5178 1.957113 GCCCCTGATGAGGAAAAGGTG 60.957 57.143 0.00 0.00 42.93 4.00
3609 5179 0.332972 GCCCCTGATGAGGAAAAGGT 59.667 55.000 0.00 0.00 42.93 3.50
3610 5180 0.396278 GGCCCCTGATGAGGAAAAGG 60.396 60.000 0.00 0.00 42.93 3.11
3611 5181 0.749454 CGGCCCCTGATGAGGAAAAG 60.749 60.000 0.00 0.00 42.93 2.27
3612 5182 1.302949 CGGCCCCTGATGAGGAAAA 59.697 57.895 0.00 0.00 42.93 2.29
3613 5183 2.679342 CCGGCCCCTGATGAGGAAA 61.679 63.158 0.00 0.00 42.93 3.13
3614 5184 3.089874 CCGGCCCCTGATGAGGAA 61.090 66.667 0.00 0.00 42.93 3.36
3615 5185 2.539277 TAACCGGCCCCTGATGAGGA 62.539 60.000 0.00 0.00 42.93 3.71
3616 5186 2.044806 CTAACCGGCCCCTGATGAGG 62.045 65.000 0.00 0.00 39.42 3.86
3617 5187 1.447643 CTAACCGGCCCCTGATGAG 59.552 63.158 0.00 0.00 0.00 2.90
3618 5188 2.070039 CCTAACCGGCCCCTGATGA 61.070 63.158 0.00 0.00 0.00 2.92
3619 5189 2.510906 CCTAACCGGCCCCTGATG 59.489 66.667 0.00 0.00 0.00 3.07
3628 5198 0.748005 CCCTCAATGTGCCTAACCGG 60.748 60.000 0.00 0.00 0.00 5.28
3629 5199 0.748005 CCCCTCAATGTGCCTAACCG 60.748 60.000 0.00 0.00 0.00 4.44
3630 5200 0.623723 TCCCCTCAATGTGCCTAACC 59.376 55.000 0.00 0.00 0.00 2.85
3631 5201 1.004277 TGTCCCCTCAATGTGCCTAAC 59.996 52.381 0.00 0.00 0.00 2.34
3632 5202 1.367346 TGTCCCCTCAATGTGCCTAA 58.633 50.000 0.00 0.00 0.00 2.69
3633 5203 1.367346 TTGTCCCCTCAATGTGCCTA 58.633 50.000 0.00 0.00 0.00 3.93
3634 5204 0.482446 TTTGTCCCCTCAATGTGCCT 59.518 50.000 0.00 0.00 0.00 4.75
3635 5205 1.337118 TTTTGTCCCCTCAATGTGCC 58.663 50.000 0.00 0.00 0.00 5.01
3636 5206 2.289010 CCTTTTTGTCCCCTCAATGTGC 60.289 50.000 0.00 0.00 0.00 4.57
3637 5207 2.299867 CCCTTTTTGTCCCCTCAATGTG 59.700 50.000 0.00 0.00 0.00 3.21
3638 5208 2.608623 CCCTTTTTGTCCCCTCAATGT 58.391 47.619 0.00 0.00 0.00 2.71
3639 5209 1.901833 CCCCTTTTTGTCCCCTCAATG 59.098 52.381 0.00 0.00 0.00 2.82
3640 5210 1.831290 GCCCCTTTTTGTCCCCTCAAT 60.831 52.381 0.00 0.00 0.00 2.57
3641 5211 0.471022 GCCCCTTTTTGTCCCCTCAA 60.471 55.000 0.00 0.00 0.00 3.02
3642 5212 1.155155 GCCCCTTTTTGTCCCCTCA 59.845 57.895 0.00 0.00 0.00 3.86
3643 5213 0.612174 GAGCCCCTTTTTGTCCCCTC 60.612 60.000 0.00 0.00 0.00 4.30
3644 5214 1.465172 GAGCCCCTTTTTGTCCCCT 59.535 57.895 0.00 0.00 0.00 4.79
3645 5215 1.609501 GGAGCCCCTTTTTGTCCCC 60.610 63.158 0.00 0.00 0.00 4.81
3646 5216 0.252239 ATGGAGCCCCTTTTTGTCCC 60.252 55.000 0.00 0.00 0.00 4.46
3647 5217 0.897621 CATGGAGCCCCTTTTTGTCC 59.102 55.000 0.00 0.00 0.00 4.02
3648 5218 0.897621 CCATGGAGCCCCTTTTTGTC 59.102 55.000 5.56 0.00 0.00 3.18
3649 5219 0.486879 TCCATGGAGCCCCTTTTTGT 59.513 50.000 11.44 0.00 0.00 2.83
3650 5220 1.483415 CATCCATGGAGCCCCTTTTTG 59.517 52.381 21.33 6.19 0.00 2.44
3651 5221 1.079323 ACATCCATGGAGCCCCTTTTT 59.921 47.619 21.33 0.00 0.00 1.94
3652 5222 0.712380 ACATCCATGGAGCCCCTTTT 59.288 50.000 21.33 0.00 0.00 2.27
3653 5223 0.712380 AACATCCATGGAGCCCCTTT 59.288 50.000 21.33 0.00 0.00 3.11
3654 5224 0.032813 CAACATCCATGGAGCCCCTT 60.033 55.000 21.33 0.00 0.00 3.95
3655 5225 1.217057 ACAACATCCATGGAGCCCCT 61.217 55.000 21.33 0.00 0.00 4.79
3656 5226 0.753111 GACAACATCCATGGAGCCCC 60.753 60.000 21.33 3.41 0.00 5.80
3657 5227 1.097547 CGACAACATCCATGGAGCCC 61.098 60.000 21.33 5.10 0.00 5.19
3658 5228 0.392998 ACGACAACATCCATGGAGCC 60.393 55.000 21.33 0.00 0.00 4.70
3659 5229 2.205074 CTACGACAACATCCATGGAGC 58.795 52.381 21.33 4.25 0.00 4.70
3660 5230 2.483714 CCCTACGACAACATCCATGGAG 60.484 54.545 21.33 14.28 0.00 3.86
3661 5231 1.484653 CCCTACGACAACATCCATGGA 59.515 52.381 18.88 18.88 0.00 3.41
3662 5232 1.484653 TCCCTACGACAACATCCATGG 59.515 52.381 4.97 4.97 0.00 3.66
3663 5233 2.979814 TCCCTACGACAACATCCATG 57.020 50.000 0.00 0.00 0.00 3.66
3664 5234 3.370527 CCTTTCCCTACGACAACATCCAT 60.371 47.826 0.00 0.00 0.00 3.41
3665 5235 2.027561 CCTTTCCCTACGACAACATCCA 60.028 50.000 0.00 0.00 0.00 3.41
3666 5236 2.629051 CCTTTCCCTACGACAACATCC 58.371 52.381 0.00 0.00 0.00 3.51
3667 5237 2.027469 ACCCTTTCCCTACGACAACATC 60.027 50.000 0.00 0.00 0.00 3.06
3668 5238 1.982958 ACCCTTTCCCTACGACAACAT 59.017 47.619 0.00 0.00 0.00 2.71
3669 5239 1.426751 ACCCTTTCCCTACGACAACA 58.573 50.000 0.00 0.00 0.00 3.33
3670 5240 2.148768 CAACCCTTTCCCTACGACAAC 58.851 52.381 0.00 0.00 0.00 3.32
3671 5241 1.543871 GCAACCCTTTCCCTACGACAA 60.544 52.381 0.00 0.00 0.00 3.18
3684 5254 3.517500 TCTTTGGTTTTCTTTGCAACCCT 59.482 39.130 0.00 0.00 41.73 4.34
3687 5257 5.580297 TGACATCTTTGGTTTTCTTTGCAAC 59.420 36.000 0.00 0.00 0.00 4.17
3739 5309 2.434774 CTAATTAGGGGCCGGGGC 59.565 66.667 13.01 13.01 41.06 5.80
3740 5310 2.002018 TTGCTAATTAGGGGCCGGGG 62.002 60.000 14.28 0.00 0.00 5.73
3741 5311 0.112412 ATTGCTAATTAGGGGCCGGG 59.888 55.000 14.28 0.00 0.00 5.73
3742 5312 1.886542 GAATTGCTAATTAGGGGCCGG 59.113 52.381 14.28 0.00 0.00 6.13
3745 5315 3.225940 AGCTGAATTGCTAATTAGGGGC 58.774 45.455 14.28 1.56 42.10 5.80
3801 5371 2.093447 AGGATTAGAGTTCACGGCTTGG 60.093 50.000 0.00 0.00 0.00 3.61
3820 5390 3.686726 GTGAGATACCACTTTGCAAGAGG 59.313 47.826 0.00 5.80 43.87 3.69
3898 5498 0.036010 AGGAAGATGAAGCGTGTGGG 60.036 55.000 0.00 0.00 0.00 4.61
3924 5526 1.856539 ATGTGGCTTGTGGGAGGAGG 61.857 60.000 0.00 0.00 0.00 4.30
3949 5551 3.500448 GAGGGATTTCCATCCTTCCTC 57.500 52.381 0.00 0.00 45.96 3.71
3982 5585 2.418334 GGAGAAGAATCGTGGTGGGTAC 60.418 54.545 0.00 0.00 0.00 3.34
3992 5595 0.386113 GGAGGACCGGAGAAGAATCG 59.614 60.000 9.46 0.00 0.00 3.34
4057 5674 7.416664 CCATGGAGGAACACAAATAATACTTGG 60.417 40.741 5.56 0.00 41.22 3.61
4123 5757 4.261322 CCCGGTGCAAAATCTAGAATCATG 60.261 45.833 0.00 0.00 0.00 3.07
4124 5758 3.885297 CCCGGTGCAAAATCTAGAATCAT 59.115 43.478 0.00 0.00 0.00 2.45
4149 5783 3.299503 GCCCAATCCTGGTGATATTTGT 58.700 45.455 0.00 0.00 41.72 2.83
4226 5861 4.122776 ACAACAGCTATGATCGATTGTCC 58.877 43.478 0.00 0.00 0.00 4.02
4265 5900 1.476471 GCCAGAATCAGGAGGGTGATG 60.476 57.143 0.00 0.00 37.24 3.07
4274 5909 1.108776 CCACAATGGCCAGAATCAGG 58.891 55.000 13.05 4.35 0.00 3.86
4347 5982 2.972713 AGAGAGAGAGAGAGGCGTAGAT 59.027 50.000 0.00 0.00 0.00 1.98
4348 5983 2.364324 GAGAGAGAGAGAGAGGCGTAGA 59.636 54.545 0.00 0.00 0.00 2.59
4351 5986 1.139058 GAGAGAGAGAGAGAGAGGCGT 59.861 57.143 0.00 0.00 0.00 5.68
4353 5988 2.435805 TGAGAGAGAGAGAGAGAGAGGC 59.564 54.545 0.00 0.00 0.00 4.70
4354 5989 3.494048 GCTGAGAGAGAGAGAGAGAGAGG 60.494 56.522 0.00 0.00 0.00 3.69
4369 6398 2.104859 CACGTGCATGGGCTGAGAG 61.105 63.158 11.36 0.00 41.91 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.