Multiple sequence alignment - TraesCS7A01G536500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G536500 chr7A 100.000 3776 0 0 1 3776 713832498 713836273 0.000000e+00 6974.0
1 TraesCS7A01G536500 chr7A 88.087 1830 124 35 1605 3393 714032567 714034343 0.000000e+00 2085.0
2 TraesCS7A01G536500 chr7A 89.208 1566 98 27 1605 3138 714209428 714210954 0.000000e+00 1890.0
3 TraesCS7A01G536500 chr7A 92.228 772 46 4 848 1605 714031751 714032522 0.000000e+00 1081.0
4 TraesCS7A01G536500 chr7A 91.969 772 47 5 848 1605 714208613 714209383 0.000000e+00 1068.0
5 TraesCS7A01G536500 chr7A 92.330 352 25 1 480 831 714208280 714208629 2.030000e-137 499.0
6 TraesCS7A01G536500 chr7A 89.011 364 38 2 3392 3754 714211190 714211552 2.070000e-122 449.0
7 TraesCS7A01G536500 chr7A 90.270 185 17 1 328 512 714175180 714175363 1.360000e-59 241.0
8 TraesCS7A01G536500 chr7A 91.946 149 10 1 683 831 714031621 714031767 1.370000e-49 207.0
9 TraesCS7A01G536500 chr7A 89.634 164 16 1 322 485 714207785 714207947 1.370000e-49 207.0
10 TraesCS7A01G536500 chr7A 97.468 79 2 0 1 79 724171462 724171384 6.580000e-28 135.0
11 TraesCS7A01G536500 chr7A 93.103 87 6 0 1 87 42709127 42709213 1.100000e-25 128.0
12 TraesCS7A01G536500 chr7A 97.561 41 1 0 3355 3395 714210954 714210994 1.880000e-08 71.3
13 TraesCS7A01G536500 chr7D 93.315 2962 140 22 326 3252 619581425 619584363 0.000000e+00 4320.0
14 TraesCS7A01G536500 chr7D 93.118 2659 118 28 322 2951 620582473 620585095 0.000000e+00 3836.0
15 TraesCS7A01G536500 chr7D 89.406 1095 78 13 2193 3252 619588418 619589509 0.000000e+00 1345.0
16 TraesCS7A01G536500 chr7D 80.698 860 121 25 1372 2197 414293942 414293094 8.900000e-176 627.0
17 TraesCS7A01G536500 chr7D 83.937 442 49 8 1150 1584 619359206 619358780 1.630000e-108 403.0
18 TraesCS7A01G536500 chr7D 84.103 390 44 11 848 1225 619359552 619359169 9.970000e-96 361.0
19 TraesCS7A01G536500 chr7D 91.534 189 16 0 2948 3136 620592234 620592422 1.040000e-65 261.0
20 TraesCS7A01G536500 chr7D 80.528 303 46 9 1258 1558 620213875 620214166 1.770000e-53 220.0
21 TraesCS7A01G536500 chr7D 80.224 268 39 7 1296 1559 619200474 619200731 4.980000e-44 189.0
22 TraesCS7A01G536500 chr7D 80.224 268 39 8 1296 1559 619231048 619231305 4.980000e-44 189.0
23 TraesCS7A01G536500 chr7D 76.316 266 47 10 1316 1566 619404810 619405074 1.100000e-25 128.0
24 TraesCS7A01G536500 chr7D 85.075 67 10 0 3434 3500 619799643 619799709 6.770000e-08 69.4
25 TraesCS7A01G536500 chr7B 92.192 1934 99 24 897 2824 715322453 715320566 0.000000e+00 2687.0
26 TraesCS7A01G536500 chr7B 86.825 1852 176 34 848 2676 714901247 714899441 0.000000e+00 2006.0
27 TraesCS7A01G536500 chr7B 86.778 1853 175 36 848 2676 715083546 715081740 0.000000e+00 2001.0
28 TraesCS7A01G536500 chr7B 86.731 1854 175 31 848 2676 715155623 715153816 0.000000e+00 1995.0
29 TraesCS7A01G536500 chr7B 86.516 1854 179 31 848 2676 715122943 715121136 0.000000e+00 1973.0
30 TraesCS7A01G536500 chr7B 85.609 1084 97 31 848 1909 714950393 714949347 0.000000e+00 1083.0
31 TraesCS7A01G536500 chr7B 93.056 432 24 4 3349 3776 715315709 715315280 8.900000e-176 627.0
32 TraesCS7A01G536500 chr7B 95.604 273 9 2 74 343 120740534 120740262 5.790000e-118 435.0
33 TraesCS7A01G536500 chr7B 88.529 340 18 3 3018 3344 715320257 715319926 3.540000e-105 392.0
34 TraesCS7A01G536500 chr7B 86.316 285 29 6 322 602 715324511 715324233 6.130000e-78 302.0
35 TraesCS7A01G536500 chr7B 86.667 120 14 1 686 805 715322668 715322551 8.510000e-27 132.0
36 TraesCS7A01G536500 chrUn 95.846 1324 42 4 868 2191 93249869 93248559 0.000000e+00 2128.0
37 TraesCS7A01G536500 chrUn 89.344 1098 79 13 2193 3255 295702251 295701157 0.000000e+00 1345.0
38 TraesCS7A01G536500 chrUn 93.197 147 6 3 686 831 93250010 93249867 2.950000e-51 213.0
39 TraesCS7A01G536500 chr4A 84.831 2070 197 60 886 2918 700430083 700428094 0.000000e+00 1975.0
40 TraesCS7A01G536500 chr4A 98.047 256 5 0 74 329 703764767 703765022 2.680000e-121 446.0
41 TraesCS7A01G536500 chr4A 97.656 256 6 0 74 329 666202258 666202003 1.250000e-119 440.0
42 TraesCS7A01G536500 chr1A 98.031 254 5 0 74 327 558016924 558017177 3.460000e-120 442.0
43 TraesCS7A01G536500 chr1A 98.718 78 1 0 1 78 588268731 588268808 5.090000e-29 139.0
44 TraesCS7A01G536500 chr6A 97.656 256 6 0 74 329 584038485 584038740 1.250000e-119 440.0
45 TraesCS7A01G536500 chr6A 97.561 82 2 0 1 82 412509021 412509102 1.410000e-29 141.0
46 TraesCS7A01G536500 chr5A 97.656 256 6 0 74 329 45250214 45250469 1.250000e-119 440.0
47 TraesCS7A01G536500 chr5A 97.656 256 6 0 74 329 139481233 139481488 1.250000e-119 440.0
48 TraesCS7A01G536500 chr5A 97.468 79 1 1 1 79 503306332 503306409 2.370000e-27 134.0
49 TraesCS7A01G536500 chr5A 98.667 75 1 0 1 75 510241834 510241908 2.370000e-27 134.0
50 TraesCS7A01G536500 chr1B 97.656 256 6 0 74 329 12756888 12757143 1.250000e-119 440.0
51 TraesCS7A01G536500 chr3B 97.266 256 7 0 74 329 727161177 727161432 5.790000e-118 435.0
52 TraesCS7A01G536500 chr2A 97.468 79 2 0 1 79 666989335 666989257 6.580000e-28 135.0
53 TraesCS7A01G536500 chr2A 96.296 81 3 0 1 81 77174480 77174400 2.370000e-27 134.0
54 TraesCS7A01G536500 chr3A 92.308 91 4 3 1 88 710912406 710912496 3.960000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G536500 chr7A 713832498 713836273 3775 False 6974.000000 6974 100.000000 1 3776 1 chr7A.!!$F2 3775
1 TraesCS7A01G536500 chr7A 714031621 714034343 2722 False 1124.333333 2085 90.753667 683 3393 3 chr7A.!!$F4 2710
2 TraesCS7A01G536500 chr7A 714207785 714211552 3767 False 697.383333 1890 91.618833 322 3754 6 chr7A.!!$F5 3432
3 TraesCS7A01G536500 chr7D 619581425 619584363 2938 False 4320.000000 4320 93.315000 326 3252 1 chr7D.!!$F4 2926
4 TraesCS7A01G536500 chr7D 620582473 620585095 2622 False 3836.000000 3836 93.118000 322 2951 1 chr7D.!!$F8 2629
5 TraesCS7A01G536500 chr7D 619588418 619589509 1091 False 1345.000000 1345 89.406000 2193 3252 1 chr7D.!!$F5 1059
6 TraesCS7A01G536500 chr7D 414293094 414293942 848 True 627.000000 627 80.698000 1372 2197 1 chr7D.!!$R1 825
7 TraesCS7A01G536500 chr7D 619358780 619359552 772 True 382.000000 403 84.020000 848 1584 2 chr7D.!!$R2 736
8 TraesCS7A01G536500 chr7B 714899441 714901247 1806 True 2006.000000 2006 86.825000 848 2676 1 chr7B.!!$R2 1828
9 TraesCS7A01G536500 chr7B 715081740 715083546 1806 True 2001.000000 2001 86.778000 848 2676 1 chr7B.!!$R4 1828
10 TraesCS7A01G536500 chr7B 715153816 715155623 1807 True 1995.000000 1995 86.731000 848 2676 1 chr7B.!!$R6 1828
11 TraesCS7A01G536500 chr7B 715121136 715122943 1807 True 1973.000000 1973 86.516000 848 2676 1 chr7B.!!$R5 1828
12 TraesCS7A01G536500 chr7B 714949347 714950393 1046 True 1083.000000 1083 85.609000 848 1909 1 chr7B.!!$R3 1061
13 TraesCS7A01G536500 chr7B 715319926 715324511 4585 True 878.250000 2687 88.426000 322 3344 4 chr7B.!!$R8 3022
14 TraesCS7A01G536500 chrUn 295701157 295702251 1094 True 1345.000000 1345 89.344000 2193 3255 1 chrUn.!!$R1 1062
15 TraesCS7A01G536500 chrUn 93248559 93250010 1451 True 1170.500000 2128 94.521500 686 2191 2 chrUn.!!$R2 1505
16 TraesCS7A01G536500 chr4A 700428094 700430083 1989 True 1975.000000 1975 84.831000 886 2918 1 chr4A.!!$R2 2032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.0 0.00 0.00 0.00 4.00 F
143 144 0.173255 GCACCTCTGAGAGACTGAGC 59.827 60.0 11.82 0.92 41.28 4.26 F
220 221 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.0 0.00 0.00 37.60 3.51 F
339 340 0.392998 CCACAGGTTTGCGCTATCCT 60.393 55.0 14.62 14.62 0.00 3.24 F
2155 4214 0.609662 ACAACTTGCATCCCATTGGC 59.390 50.0 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 3774 0.883833 CGCCAGAAGCAAAGGTCATT 59.116 50.000 0.00 0.00 44.04 2.57 R
2066 4119 1.517257 GGATCTCAGTCGCCACGTG 60.517 63.158 9.08 9.08 0.00 4.49 R
2178 4237 2.094130 TCACACGTGGTGTAGTTGTTCA 60.094 45.455 21.57 0.00 45.65 3.18 R
2284 4343 2.030185 GTCAGTGAAAGCGGTGTAGAGA 60.030 50.000 0.00 0.00 0.00 3.10 R
3662 6194 0.179086 TGACACAAAGCACGAGCAGA 60.179 50.000 7.77 0.00 45.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.019807 ACTTTAGTCCCGGTTCAGGA 57.980 50.000 0.00 0.00 0.00 3.86
20 21 2.332117 ACTTTAGTCCCGGTTCAGGAA 58.668 47.619 0.00 0.00 34.43 3.36
21 22 2.038164 ACTTTAGTCCCGGTTCAGGAAC 59.962 50.000 0.00 3.58 40.45 3.62
31 32 2.845363 GTTCAGGAACCGGGACTAAA 57.155 50.000 6.32 0.00 35.36 1.85
32 33 2.696506 GTTCAGGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
33 34 1.272807 TCAGGAACCGGGACTAAAGG 58.727 55.000 6.32 0.00 0.00 3.11
34 35 0.392595 CAGGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
35 36 1.077930 GGAACCGGGACTAAAGGCC 60.078 63.158 6.32 0.00 0.00 5.19
36 37 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
37 38 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
38 39 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
39 40 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
40 41 0.179702 CCGGGACTAAAGGCCCTTAC 59.820 60.000 18.97 0.00 42.40 2.34
41 42 0.179092 CGGGACTAAAGGCCCTTACG 60.179 60.000 18.97 1.56 42.40 3.18
42 43 1.197812 GGGACTAAAGGCCCTTACGA 58.802 55.000 14.19 0.00 41.31 3.43
43 44 1.556451 GGGACTAAAGGCCCTTACGAA 59.444 52.381 14.19 0.00 41.31 3.85
44 45 2.172082 GGGACTAAAGGCCCTTACGAAT 59.828 50.000 14.19 0.00 41.31 3.34
45 46 3.464907 GGACTAAAGGCCCTTACGAATC 58.535 50.000 0.00 0.00 0.00 2.52
46 47 3.121544 GACTAAAGGCCCTTACGAATCG 58.878 50.000 0.00 0.00 0.00 3.34
47 48 2.159000 ACTAAAGGCCCTTACGAATCGG 60.159 50.000 7.80 0.00 0.00 4.18
48 49 0.107361 AAAGGCCCTTACGAATCGGG 60.107 55.000 7.80 0.00 41.06 5.14
49 50 0.979187 AAGGCCCTTACGAATCGGGA 60.979 55.000 7.80 0.00 40.55 5.14
50 51 1.227468 GGCCCTTACGAATCGGGAC 60.227 63.158 7.80 0.00 40.55 4.46
51 52 1.683418 GGCCCTTACGAATCGGGACT 61.683 60.000 7.80 0.00 43.05 3.85
52 53 1.035139 GCCCTTACGAATCGGGACTA 58.965 55.000 7.80 0.00 40.55 2.59
53 54 1.617357 GCCCTTACGAATCGGGACTAT 59.383 52.381 7.80 0.00 40.55 2.12
54 55 2.821969 GCCCTTACGAATCGGGACTATA 59.178 50.000 7.80 0.00 40.55 1.31
55 56 3.119566 GCCCTTACGAATCGGGACTATAG 60.120 52.174 7.80 0.00 40.55 1.31
56 57 3.442977 CCCTTACGAATCGGGACTATAGG 59.557 52.174 7.80 2.75 40.55 2.57
57 58 3.119566 CCTTACGAATCGGGACTATAGGC 60.120 52.174 7.80 0.00 0.00 3.93
58 59 1.254954 ACGAATCGGGACTATAGGCC 58.745 55.000 17.25 17.25 0.00 5.19
59 60 0.531200 CGAATCGGGACTATAGGCCC 59.469 60.000 31.77 31.77 41.11 5.80
60 61 1.891450 CGAATCGGGACTATAGGCCCT 60.891 57.143 36.19 21.66 42.40 5.19
61 62 2.258109 GAATCGGGACTATAGGCCCTT 58.742 52.381 36.19 26.53 42.40 3.95
62 63 2.417719 ATCGGGACTATAGGCCCTTT 57.582 50.000 36.19 22.81 42.40 3.11
63 64 2.185663 TCGGGACTATAGGCCCTTTT 57.814 50.000 36.19 0.00 42.40 2.27
64 65 2.484602 TCGGGACTATAGGCCCTTTTT 58.515 47.619 36.19 0.00 42.40 1.94
65 66 2.436911 TCGGGACTATAGGCCCTTTTTC 59.563 50.000 36.19 13.48 42.40 2.29
66 67 2.438392 CGGGACTATAGGCCCTTTTTCT 59.562 50.000 36.19 0.00 42.40 2.52
67 68 3.644738 CGGGACTATAGGCCCTTTTTCTA 59.355 47.826 36.19 0.00 42.40 2.10
68 69 4.502777 CGGGACTATAGGCCCTTTTTCTAC 60.503 50.000 36.19 11.37 42.40 2.59
69 70 4.202440 GGGACTATAGGCCCTTTTTCTACC 60.202 50.000 33.73 5.44 41.31 3.18
70 71 4.411212 GGACTATAGGCCCTTTTTCTACCA 59.589 45.833 14.46 0.00 0.00 3.25
71 72 5.454897 GGACTATAGGCCCTTTTTCTACCAG 60.455 48.000 14.46 0.00 0.00 4.00
72 73 5.037598 ACTATAGGCCCTTTTTCTACCAGT 58.962 41.667 0.00 0.00 0.00 4.00
73 74 2.586648 AGGCCCTTTTTCTACCAGTG 57.413 50.000 0.00 0.00 0.00 3.66
74 75 0.888619 GGCCCTTTTTCTACCAGTGC 59.111 55.000 0.00 0.00 0.00 4.40
75 76 0.521735 GCCCTTTTTCTACCAGTGCG 59.478 55.000 0.00 0.00 0.00 5.34
76 77 0.521735 CCCTTTTTCTACCAGTGCGC 59.478 55.000 0.00 0.00 0.00 6.09
77 78 1.234821 CCTTTTTCTACCAGTGCGCA 58.765 50.000 5.66 5.66 0.00 6.09
78 79 1.812571 CCTTTTTCTACCAGTGCGCAT 59.187 47.619 15.91 0.00 0.00 4.73
79 80 3.006940 CCTTTTTCTACCAGTGCGCATA 58.993 45.455 15.91 0.00 0.00 3.14
80 81 3.181510 CCTTTTTCTACCAGTGCGCATAC 60.182 47.826 15.91 0.17 0.00 2.39
81 82 2.753055 TTTCTACCAGTGCGCATACA 57.247 45.000 15.91 0.00 0.00 2.29
82 83 2.004583 TTCTACCAGTGCGCATACAC 57.995 50.000 15.91 0.00 41.02 2.90
89 90 2.311294 GTGCGCATACACTCATCCC 58.689 57.895 15.91 0.00 37.58 3.85
90 91 0.179073 GTGCGCATACACTCATCCCT 60.179 55.000 15.91 0.00 37.58 4.20
91 92 1.068588 GTGCGCATACACTCATCCCTA 59.931 52.381 15.91 0.00 37.58 3.53
92 93 1.970640 TGCGCATACACTCATCCCTAT 59.029 47.619 5.66 0.00 0.00 2.57
93 94 2.289010 TGCGCATACACTCATCCCTATG 60.289 50.000 5.66 0.00 0.00 2.23
94 95 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
95 96 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
96 97 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
97 98 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
98 99 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
99 100 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
100 101 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
101 102 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
102 103 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
103 104 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
104 105 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
105 106 0.682292 TCCCTATGAACGCACACACA 59.318 50.000 0.00 0.00 0.00 3.72
106 107 0.796312 CCCTATGAACGCACACACAC 59.204 55.000 0.00 0.00 0.00 3.82
107 108 1.507562 CCTATGAACGCACACACACA 58.492 50.000 0.00 0.00 0.00 3.72
108 109 1.194547 CCTATGAACGCACACACACAC 59.805 52.381 0.00 0.00 0.00 3.82
109 110 1.864082 CTATGAACGCACACACACACA 59.136 47.619 0.00 0.00 0.00 3.72
110 111 0.376852 ATGAACGCACACACACACAC 59.623 50.000 0.00 0.00 0.00 3.82
111 112 1.061887 GAACGCACACACACACACC 59.938 57.895 0.00 0.00 0.00 4.16
112 113 2.317685 GAACGCACACACACACACCC 62.318 60.000 0.00 0.00 0.00 4.61
113 114 2.513666 CGCACACACACACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
114 115 1.227409 CGCACACACACACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
115 116 1.495584 CGCACACACACACACCCTAC 61.496 60.000 0.00 0.00 0.00 3.18
116 117 1.164041 GCACACACACACACCCTACC 61.164 60.000 0.00 0.00 0.00 3.18
117 118 0.534203 CACACACACACACCCTACCC 60.534 60.000 0.00 0.00 0.00 3.69
118 119 1.072505 CACACACACACCCTACCCC 59.927 63.158 0.00 0.00 0.00 4.95
119 120 1.074014 ACACACACACCCTACCCCT 60.074 57.895 0.00 0.00 0.00 4.79
120 121 0.191563 ACACACACACCCTACCCCTA 59.808 55.000 0.00 0.00 0.00 3.53
121 122 1.203389 ACACACACACCCTACCCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
122 123 1.209504 CACACACACCCTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
123 124 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
124 125 1.762957 CACACACCCTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
125 126 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
126 127 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
127 128 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
128 129 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
129 130 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
130 131 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
131 132 1.133009 CCTACCCCTATGAGCACCTCT 60.133 57.143 0.00 0.00 0.00 3.69
132 133 1.967066 CTACCCCTATGAGCACCTCTG 59.033 57.143 0.00 0.00 0.00 3.35
133 134 0.339859 ACCCCTATGAGCACCTCTGA 59.660 55.000 0.00 0.00 0.00 3.27
134 135 1.047002 CCCCTATGAGCACCTCTGAG 58.953 60.000 0.00 0.00 0.00 3.35
135 136 1.412217 CCCCTATGAGCACCTCTGAGA 60.412 57.143 6.17 0.00 0.00 3.27
136 137 1.962807 CCCTATGAGCACCTCTGAGAG 59.037 57.143 6.17 1.57 0.00 3.20
137 138 2.424091 CCCTATGAGCACCTCTGAGAGA 60.424 54.545 11.82 0.00 0.00 3.10
138 139 2.622942 CCTATGAGCACCTCTGAGAGAC 59.377 54.545 11.82 0.00 0.00 3.36
139 140 2.530460 ATGAGCACCTCTGAGAGACT 57.470 50.000 11.82 5.18 0.00 3.24
140 141 1.543607 TGAGCACCTCTGAGAGACTG 58.456 55.000 11.82 6.88 0.00 3.51
141 142 1.074566 TGAGCACCTCTGAGAGACTGA 59.925 52.381 11.82 0.00 0.00 3.41
142 143 1.745087 GAGCACCTCTGAGAGACTGAG 59.255 57.143 11.82 0.00 41.94 3.35
143 144 0.173255 GCACCTCTGAGAGACTGAGC 59.827 60.000 11.82 0.92 41.28 4.26
144 145 0.817013 CACCTCTGAGAGACTGAGCC 59.183 60.000 11.82 0.00 41.28 4.70
145 146 0.679640 ACCTCTGAGAGACTGAGCCG 60.680 60.000 11.82 0.00 41.28 5.52
146 147 1.383456 CCTCTGAGAGACTGAGCCGG 61.383 65.000 11.82 0.00 41.28 6.13
147 148 2.003658 CTCTGAGAGACTGAGCCGGC 62.004 65.000 21.89 21.89 37.65 6.13
148 149 2.283173 TGAGAGACTGAGCCGGCA 60.283 61.111 31.54 7.98 0.00 5.69
149 150 1.674764 CTGAGAGACTGAGCCGGCAT 61.675 60.000 31.54 14.28 0.00 4.40
150 151 0.395724 TGAGAGACTGAGCCGGCATA 60.396 55.000 31.54 16.21 0.00 3.14
151 152 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
152 153 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
153 154 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
154 155 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
155 156 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
156 157 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
157 158 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
158 159 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
159 160 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
160 161 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
161 162 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
162 163 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
163 164 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
164 165 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
165 166 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
166 167 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
167 168 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
168 169 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
169 170 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
170 171 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
171 172 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
172 173 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
173 174 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
174 175 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
175 176 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
176 177 2.004583 TGAGATTTACGAAGCCACCG 57.995 50.000 0.00 0.00 0.00 4.94
177 178 1.274167 TGAGATTTACGAAGCCACCGT 59.726 47.619 0.00 0.00 43.26 4.83
178 179 2.492881 TGAGATTTACGAAGCCACCGTA 59.507 45.455 0.00 0.00 40.95 4.02
179 180 3.114065 GAGATTTACGAAGCCACCGTAG 58.886 50.000 0.00 0.00 42.42 3.51
192 193 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
193 194 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
214 215 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
215 216 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
216 217 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
217 218 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
218 219 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
219 220 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
220 221 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
221 222 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
222 223 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
223 224 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
224 225 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
225 226 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
226 227 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
237 238 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
238 239 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
239 240 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
240 241 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
241 242 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
242 243 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
243 244 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
244 245 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
245 246 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
246 247 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
247 248 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
248 249 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
249 250 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
250 251 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
251 252 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
261 262 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
262 263 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
263 264 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
264 265 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
265 266 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
266 267 1.486310 TCCAGGAATAATGCGAGCACT 59.514 47.619 0.00 0.00 0.00 4.40
267 268 2.698274 TCCAGGAATAATGCGAGCACTA 59.302 45.455 0.00 0.00 0.00 2.74
268 269 3.062763 CCAGGAATAATGCGAGCACTAG 58.937 50.000 0.00 0.00 0.00 2.57
269 270 3.062763 CAGGAATAATGCGAGCACTAGG 58.937 50.000 0.00 0.00 0.00 3.02
270 271 2.965831 AGGAATAATGCGAGCACTAGGA 59.034 45.455 0.00 0.00 0.00 2.94
271 272 3.580458 AGGAATAATGCGAGCACTAGGAT 59.420 43.478 0.00 0.00 0.00 3.24
272 273 4.040952 AGGAATAATGCGAGCACTAGGATT 59.959 41.667 0.00 3.32 32.01 3.01
273 274 4.757149 GGAATAATGCGAGCACTAGGATTT 59.243 41.667 0.00 0.00 30.17 2.17
274 275 5.932303 GGAATAATGCGAGCACTAGGATTTA 59.068 40.000 0.00 0.00 30.17 1.40
275 276 6.426937 GGAATAATGCGAGCACTAGGATTTAA 59.573 38.462 0.00 0.00 30.17 1.52
276 277 7.041372 GGAATAATGCGAGCACTAGGATTTAAA 60.041 37.037 0.00 0.00 30.17 1.52
277 278 5.485662 AATGCGAGCACTAGGATTTAAAC 57.514 39.130 0.00 0.00 0.00 2.01
278 279 3.267483 TGCGAGCACTAGGATTTAAACC 58.733 45.455 0.00 0.00 0.00 3.27
279 280 2.612672 GCGAGCACTAGGATTTAAACCC 59.387 50.000 0.00 0.00 0.00 4.11
280 281 3.681874 GCGAGCACTAGGATTTAAACCCT 60.682 47.826 6.32 6.32 36.60 4.34
281 282 3.871594 CGAGCACTAGGATTTAAACCCTG 59.128 47.826 11.79 4.12 34.11 4.45
282 283 4.200092 GAGCACTAGGATTTAAACCCTGG 58.800 47.826 11.79 11.06 37.12 4.45
283 284 3.591977 AGCACTAGGATTTAAACCCTGGT 59.408 43.478 11.78 11.78 43.75 4.00
285 286 4.586306 ACTAGGATTTAAACCCTGGTGG 57.414 45.455 16.49 4.37 41.78 4.61
295 296 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
296 297 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
311 312 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
312 313 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
313 314 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
314 315 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
315 316 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
316 317 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
317 318 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
318 319 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
319 320 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
320 321 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
321 322 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
322 323 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
323 324 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
324 325 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
339 340 0.392998 CCACAGGTTTGCGCTATCCT 60.393 55.000 14.62 14.62 0.00 3.24
435 436 2.359214 CTGAACTATGAGCTACGAGCCA 59.641 50.000 0.00 0.00 43.77 4.75
512 851 8.109705 TGCATGAAGCTGTTTTTCTTTCTATA 57.890 30.769 0.00 0.00 45.94 1.31
513 852 8.742777 TGCATGAAGCTGTTTTTCTTTCTATAT 58.257 29.630 0.00 0.00 45.94 0.86
679 1237 3.069729 GGCCACGATCTAGAAGGTACATT 59.930 47.826 0.00 0.00 0.00 2.71
833 2670 6.942976 AGATAAGGTCGGTGAAAGACATTTA 58.057 36.000 1.74 0.00 41.82 1.40
834 2671 7.391620 AGATAAGGTCGGTGAAAGACATTTAA 58.608 34.615 1.74 0.00 41.82 1.52
835 2672 7.881232 AGATAAGGTCGGTGAAAGACATTTAAA 59.119 33.333 1.74 0.00 41.82 1.52
836 2673 6.702716 AAGGTCGGTGAAAGACATTTAAAA 57.297 33.333 0.00 0.00 39.19 1.52
837 2674 6.702716 AGGTCGGTGAAAGACATTTAAAAA 57.297 33.333 0.00 0.00 40.20 1.94
961 2836 2.671396 CACTAAGGTACACGTGCATTCC 59.329 50.000 17.22 12.64 0.00 3.01
1229 3182 5.897377 TGATATCTGTTGCTAGCGCTATA 57.103 39.130 19.19 7.54 36.97 1.31
1230 3183 6.456795 TGATATCTGTTGCTAGCGCTATAT 57.543 37.500 19.19 11.05 36.97 0.86
1244 3197 7.219154 GCTAGCGCTATATTACTACATCACTTG 59.781 40.741 19.19 0.28 0.00 3.16
1256 3209 3.690460 ACATCACTTGAATCTTGTCCCC 58.310 45.455 0.00 0.00 0.00 4.81
1561 3527 9.944376 GATGCAATCAGATTTTATAGGTACCTA 57.056 33.333 23.82 23.82 44.70 3.08
1643 3676 5.544650 CATGCATCCAAAATAATCCTTCCC 58.455 41.667 0.00 0.00 0.00 3.97
1739 3774 5.424573 AGATCAATCTTGTGACTCATCTGGA 59.575 40.000 0.00 0.00 31.97 3.86
1919 3965 3.557185 GCAATGATTACATGAGCGACTCA 59.443 43.478 11.12 11.12 44.99 3.41
1965 4013 5.807520 ACAAGCTTCGATGATGTAAGTAGTG 59.192 40.000 0.00 0.00 0.00 2.74
2043 4096 2.936498 TGCTAATTAACTTCTCCTGCGC 59.064 45.455 0.00 0.00 0.00 6.09
2066 4119 3.491267 GCAGCTTGATACTTATGTCGGAC 59.509 47.826 0.00 0.00 0.00 4.79
2155 4214 0.609662 ACAACTTGCATCCCATTGGC 59.390 50.000 0.00 0.00 0.00 4.52
2178 4237 2.161609 GCACGCCTTTGCATACTAGTTT 59.838 45.455 0.00 0.00 42.49 2.66
2279 4338 4.906618 AGAAAGGGACAACGTTCACATAT 58.093 39.130 0.00 0.00 32.36 1.78
2284 4343 3.945285 GGGACAACGTTCACATATTGGAT 59.055 43.478 0.00 0.00 0.00 3.41
2341 4400 4.202524 GCCCCTGGTAAATACACATATCCA 60.203 45.833 0.00 0.00 0.00 3.41
2375 4436 7.156876 TGTAAGCCAAATCTGGTTTCTAATG 57.843 36.000 0.00 0.00 42.02 1.90
2376 4437 6.719370 TGTAAGCCAAATCTGGTTTCTAATGT 59.281 34.615 0.00 0.00 42.02 2.71
2377 4438 7.885922 TGTAAGCCAAATCTGGTTTCTAATGTA 59.114 33.333 0.00 0.00 42.02 2.29
2419 4485 8.920665 TGTAACTATGCATAATTGTTTTTGTGC 58.079 29.630 10.57 0.00 42.17 4.57
2440 4506 2.976490 GCATGCAGGTGGAGGGTCT 61.976 63.158 14.21 0.00 0.00 3.85
2548 4614 1.352156 GGAAGCGCTTGTACGACCTG 61.352 60.000 30.47 0.00 34.06 4.00
2626 4692 1.635487 TGGGAAGCTGTAATGAAGGCT 59.365 47.619 0.00 0.00 36.53 4.58
2667 4760 4.082136 GGAGTTTCTTGATGAGGACTACGT 60.082 45.833 0.00 0.00 0.00 3.57
2668 4761 5.470047 AGTTTCTTGATGAGGACTACGTT 57.530 39.130 0.00 0.00 0.00 3.99
2669 4762 5.230942 AGTTTCTTGATGAGGACTACGTTG 58.769 41.667 0.00 0.00 0.00 4.10
2670 4763 3.232213 TCTTGATGAGGACTACGTTGC 57.768 47.619 0.00 0.00 0.00 4.17
2671 4764 2.560981 TCTTGATGAGGACTACGTTGCA 59.439 45.455 0.00 0.00 0.00 4.08
2672 4765 3.195610 TCTTGATGAGGACTACGTTGCAT 59.804 43.478 0.00 0.00 0.00 3.96
2673 4766 2.892374 TGATGAGGACTACGTTGCATG 58.108 47.619 0.00 0.00 0.00 4.06
2674 4767 2.495669 TGATGAGGACTACGTTGCATGA 59.504 45.455 0.00 0.00 0.00 3.07
2675 4768 3.132824 TGATGAGGACTACGTTGCATGAT 59.867 43.478 0.00 0.00 0.00 2.45
2676 4769 3.610040 TGAGGACTACGTTGCATGATT 57.390 42.857 0.00 0.00 0.00 2.57
2677 4770 3.261580 TGAGGACTACGTTGCATGATTG 58.738 45.455 0.00 0.00 0.00 2.67
2678 4771 2.609459 GAGGACTACGTTGCATGATTGG 59.391 50.000 0.00 0.00 0.00 3.16
2679 4772 1.064060 GGACTACGTTGCATGATTGGC 59.936 52.381 0.00 0.00 0.00 4.52
2680 4773 1.064060 GACTACGTTGCATGATTGGCC 59.936 52.381 0.00 0.00 0.00 5.36
2681 4774 1.340017 ACTACGTTGCATGATTGGCCT 60.340 47.619 3.32 0.00 0.00 5.19
2682 4775 2.093181 ACTACGTTGCATGATTGGCCTA 60.093 45.455 3.32 0.00 0.00 3.93
2683 4776 1.832883 ACGTTGCATGATTGGCCTAA 58.167 45.000 3.32 0.00 0.00 2.69
2684 4777 2.166829 ACGTTGCATGATTGGCCTAAA 58.833 42.857 3.32 0.00 0.00 1.85
2685 4778 2.560542 ACGTTGCATGATTGGCCTAAAA 59.439 40.909 3.32 0.00 0.00 1.52
2686 4779 3.006323 ACGTTGCATGATTGGCCTAAAAA 59.994 39.130 3.32 0.00 0.00 1.94
2776 4897 5.063312 GCTTTATAAATGGCATGCGTGTTTT 59.937 36.000 12.44 10.68 0.00 2.43
2824 4945 4.987912 CCTTGTGTTTTGATGGCGTTTTAT 59.012 37.500 0.00 0.00 0.00 1.40
2825 4946 5.107530 CCTTGTGTTTTGATGGCGTTTTATG 60.108 40.000 0.00 0.00 0.00 1.90
2826 4947 4.938080 TGTGTTTTGATGGCGTTTTATGT 58.062 34.783 0.00 0.00 0.00 2.29
2843 4989 7.201487 CGTTTTATGTAATGAGACATGAACGGA 60.201 37.037 20.35 0.00 45.15 4.69
2856 5002 7.752695 AGACATGAACGGATGTTAATTTTCTC 58.247 34.615 0.00 0.00 38.78 2.87
3024 5340 9.491675 TCAGTAAGATTAGACTCTAATCGGTAG 57.508 37.037 24.08 17.10 38.56 3.18
3030 5347 7.940137 AGATTAGACTCTAATCGGTAGACATGT 59.060 37.037 24.08 0.00 38.56 3.21
3114 5431 4.277239 CGAAGGCCATGTTCGTCA 57.723 55.556 15.47 0.00 41.50 4.35
3229 5562 4.576879 ACGAGGTCCCAGAAAAGATTTAC 58.423 43.478 0.00 0.00 0.00 2.01
3292 5625 1.071471 CTCAGGTGTTTGCTCGGGT 59.929 57.895 0.00 0.00 0.00 5.28
3364 5697 5.977725 ACTATACATACAGTAGCGTTGCTTG 59.022 40.000 0.00 0.00 40.44 4.01
3426 5958 4.682778 ACATGTATATACCGTGCCTTGT 57.317 40.909 10.38 1.07 0.00 3.16
3434 5966 1.140589 CCGTGCCTTGTTTTGTGCA 59.859 52.632 0.00 0.00 0.00 4.57
3435 5967 0.459237 CCGTGCCTTGTTTTGTGCAA 60.459 50.000 0.00 0.00 35.16 4.08
3509 6041 0.250467 AGCGAACTGACTTGGCATGT 60.250 50.000 5.63 5.63 36.09 3.21
3569 6101 6.679327 AGTAATTTTCATTTAGCGGGAGAC 57.321 37.500 0.00 0.00 0.00 3.36
3583 6115 1.471153 GGGAGACGAATTTCCTCGACC 60.471 57.143 0.00 1.09 41.44 4.79
3588 6120 0.989890 CGAATTTCCTCGACCACGAC 59.010 55.000 0.00 0.00 43.81 4.34
3595 6127 0.866061 CCTCGACCACGACGCTTATG 60.866 60.000 0.00 0.00 43.81 1.90
3619 6151 5.595885 CGGTGACTTCATGTATCTCAAGAT 58.404 41.667 0.00 0.00 38.51 2.40
3620 6152 5.689514 CGGTGACTTCATGTATCTCAAGATC 59.310 44.000 0.00 0.00 36.05 2.75
3625 6157 8.316946 TGACTTCATGTATCTCAAGATCTGTTT 58.683 33.333 0.00 0.00 36.05 2.83
3627 6159 9.512588 ACTTCATGTATCTCAAGATCTGTTTTT 57.487 29.630 0.00 0.00 36.05 1.94
3639 6171 1.491332 TCTGTTTTTCGGTCCCTTGGA 59.509 47.619 0.00 0.00 0.00 3.53
3649 6181 2.691850 CGGTCCCTTGGAGGTCCTTATA 60.692 54.545 0.00 0.00 36.82 0.98
3652 6184 2.090153 TCCCTTGGAGGTCCTTATAGGG 60.090 54.545 19.92 19.92 39.90 3.53
3656 6188 3.625252 TGGAGGTCCTTATAGGGGTAC 57.375 52.381 0.29 0.00 35.59 3.34
3662 6194 4.035814 GGTCCTTATAGGGGTACTGTGTT 58.964 47.826 0.29 0.00 35.59 3.32
3663 6195 4.100653 GGTCCTTATAGGGGTACTGTGTTC 59.899 50.000 0.29 0.00 35.59 3.18
3680 6212 0.937304 TTCTGCTCGTGCTTTGTGTC 59.063 50.000 11.19 0.00 40.48 3.67
3686 6219 1.933181 CTCGTGCTTTGTGTCAGTCAA 59.067 47.619 0.00 0.00 0.00 3.18
3711 6244 5.250200 CAAGGTTGTTTAGGCTATGGTGTA 58.750 41.667 0.00 0.00 0.00 2.90
3714 6247 6.589135 AGGTTGTTTAGGCTATGGTGTATAC 58.411 40.000 0.00 0.00 0.00 1.47
3729 6262 5.706833 TGGTGTATACAACTCGAAGACAGTA 59.293 40.000 21.18 0.00 33.92 2.74
3730 6263 6.026513 GGTGTATACAACTCGAAGACAGTAC 58.973 44.000 13.87 0.00 0.00 2.73
3732 6265 2.701073 ACAACTCGAAGACAGTACGG 57.299 50.000 0.00 0.00 0.00 4.02
3735 6268 1.139095 CTCGAAGACAGTACGGGGC 59.861 63.158 0.00 0.00 0.00 5.80
3744 6277 0.610785 CAGTACGGGGCCAAACCAAT 60.611 55.000 4.39 0.00 42.05 3.16
3757 6290 4.270392 CCAATACGGTGCGACACA 57.730 55.556 11.20 0.00 35.86 3.72
3758 6291 2.534452 CCAATACGGTGCGACACAA 58.466 52.632 11.20 0.00 35.86 3.33
3759 6292 0.165079 CCAATACGGTGCGACACAAC 59.835 55.000 11.20 0.00 35.86 3.32
3764 6297 3.231501 GGTGCGACACAACGTCTC 58.768 61.111 11.20 0.00 42.98 3.36
3765 6298 1.299926 GGTGCGACACAACGTCTCT 60.300 57.895 11.20 0.00 42.98 3.10
3766 6299 0.039798 GGTGCGACACAACGTCTCTA 60.040 55.000 11.20 0.00 42.98 2.43
3767 6300 1.402456 GGTGCGACACAACGTCTCTAT 60.402 52.381 11.20 0.00 42.98 1.98
3768 6301 2.159476 GGTGCGACACAACGTCTCTATA 60.159 50.000 11.20 0.00 42.98 1.31
3769 6302 3.099362 GTGCGACACAACGTCTCTATAG 58.901 50.000 5.30 0.00 42.98 1.31
3770 6303 2.096980 TGCGACACAACGTCTCTATAGG 59.903 50.000 0.00 0.00 42.98 2.57
3771 6304 2.097142 GCGACACAACGTCTCTATAGGT 59.903 50.000 0.00 0.00 42.98 3.08
3772 6305 3.788135 GCGACACAACGTCTCTATAGGTC 60.788 52.174 0.00 0.00 42.98 3.85
3773 6306 3.622163 CGACACAACGTCTCTATAGGTCT 59.378 47.826 0.00 0.00 42.98 3.85
3774 6307 4.807834 CGACACAACGTCTCTATAGGTCTA 59.192 45.833 0.00 0.00 42.98 2.59
3775 6308 5.050904 CGACACAACGTCTCTATAGGTCTAG 60.051 48.000 0.00 0.00 42.98 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.019807 TCCTGAACCGGGACTAAAGT 57.980 50.000 6.32 0.00 33.41 2.66
1 2 2.696506 GTTCCTGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 38.83 1.85
2 3 2.845363 GTTCCTGAACCGGGACTAAA 57.155 50.000 6.32 0.00 38.83 1.85
12 13 2.614734 CCTTTAGTCCCGGTTCCTGAAC 60.615 54.545 0.00 1.33 40.45 3.18
13 14 1.626825 CCTTTAGTCCCGGTTCCTGAA 59.373 52.381 0.00 0.00 0.00 3.02
14 15 1.272807 CCTTTAGTCCCGGTTCCTGA 58.727 55.000 0.00 0.00 0.00 3.86
15 16 0.392595 GCCTTTAGTCCCGGTTCCTG 60.393 60.000 0.00 0.00 0.00 3.86
16 17 1.559965 GGCCTTTAGTCCCGGTTCCT 61.560 60.000 0.00 0.00 0.00 3.36
17 18 1.077930 GGCCTTTAGTCCCGGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
18 19 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
19 20 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
23 24 1.197812 TCGTAAGGGCCTTTAGTCCC 58.802 55.000 26.29 5.03 42.94 4.46
24 25 3.464907 GATTCGTAAGGGCCTTTAGTCC 58.535 50.000 26.29 6.32 38.47 3.85
25 26 3.121544 CGATTCGTAAGGGCCTTTAGTC 58.878 50.000 26.29 14.76 38.47 2.59
26 27 2.159000 CCGATTCGTAAGGGCCTTTAGT 60.159 50.000 26.29 7.38 38.47 2.24
27 28 2.480845 CCGATTCGTAAGGGCCTTTAG 58.519 52.381 26.29 18.30 38.47 1.85
28 29 1.139455 CCCGATTCGTAAGGGCCTTTA 59.861 52.381 26.29 2.60 38.51 1.85
29 30 0.107361 CCCGATTCGTAAGGGCCTTT 60.107 55.000 26.29 5.43 38.51 3.11
30 31 0.979187 TCCCGATTCGTAAGGGCCTT 60.979 55.000 24.44 24.44 44.70 4.35
31 32 1.382146 TCCCGATTCGTAAGGGCCT 60.382 57.895 0.00 0.00 44.70 5.19
32 33 1.227468 GTCCCGATTCGTAAGGGCC 60.227 63.158 5.20 0.00 44.70 5.80
33 34 1.035139 TAGTCCCGATTCGTAAGGGC 58.965 55.000 5.20 0.80 44.70 5.19
34 35 3.442977 CCTATAGTCCCGATTCGTAAGGG 59.557 52.174 5.20 0.00 46.40 3.95
35 36 3.119566 GCCTATAGTCCCGATTCGTAAGG 60.120 52.174 5.20 0.00 38.47 2.69
36 37 3.119566 GGCCTATAGTCCCGATTCGTAAG 60.120 52.174 5.20 0.00 0.00 2.34
37 38 2.821969 GGCCTATAGTCCCGATTCGTAA 59.178 50.000 5.20 0.00 0.00 3.18
38 39 2.440409 GGCCTATAGTCCCGATTCGTA 58.560 52.381 5.20 0.00 0.00 3.43
39 40 1.254954 GGCCTATAGTCCCGATTCGT 58.745 55.000 5.20 0.00 0.00 3.85
40 41 0.531200 GGGCCTATAGTCCCGATTCG 59.469 60.000 2.38 0.00 32.00 3.34
46 47 4.202440 GGTAGAAAAAGGGCCTATAGTCCC 60.202 50.000 11.13 11.13 42.94 4.46
47 48 4.411212 TGGTAGAAAAAGGGCCTATAGTCC 59.589 45.833 6.41 4.84 0.00 3.85
48 49 5.130643 ACTGGTAGAAAAAGGGCCTATAGTC 59.869 44.000 6.41 2.06 0.00 2.59
49 50 5.037598 ACTGGTAGAAAAAGGGCCTATAGT 58.962 41.667 6.41 0.00 0.00 2.12
50 51 5.368989 CACTGGTAGAAAAAGGGCCTATAG 58.631 45.833 6.41 0.00 0.00 1.31
51 52 4.384868 GCACTGGTAGAAAAAGGGCCTATA 60.385 45.833 6.41 0.00 34.14 1.31
52 53 3.624959 GCACTGGTAGAAAAAGGGCCTAT 60.625 47.826 6.41 0.00 34.14 2.57
53 54 2.290705 GCACTGGTAGAAAAAGGGCCTA 60.291 50.000 6.41 0.00 34.14 3.93
54 55 1.547901 GCACTGGTAGAAAAAGGGCCT 60.548 52.381 0.00 0.00 34.14 5.19
55 56 0.888619 GCACTGGTAGAAAAAGGGCC 59.111 55.000 0.00 0.00 34.14 5.80
56 57 0.521735 CGCACTGGTAGAAAAAGGGC 59.478 55.000 0.00 0.00 36.98 5.19
57 58 0.521735 GCGCACTGGTAGAAAAAGGG 59.478 55.000 0.30 0.00 0.00 3.95
58 59 1.234821 TGCGCACTGGTAGAAAAAGG 58.765 50.000 5.66 0.00 0.00 3.11
59 60 3.435327 TGTATGCGCACTGGTAGAAAAAG 59.565 43.478 14.90 0.00 0.00 2.27
60 61 3.187637 GTGTATGCGCACTGGTAGAAAAA 59.812 43.478 14.90 0.00 36.51 1.94
61 62 2.739913 GTGTATGCGCACTGGTAGAAAA 59.260 45.455 14.90 0.00 36.51 2.29
62 63 2.028476 AGTGTATGCGCACTGGTAGAAA 60.028 45.455 14.90 0.00 46.72 2.52
63 64 1.548719 AGTGTATGCGCACTGGTAGAA 59.451 47.619 14.90 0.00 46.72 2.10
64 65 1.182667 AGTGTATGCGCACTGGTAGA 58.817 50.000 14.90 0.00 46.72 2.59
65 66 3.741029 AGTGTATGCGCACTGGTAG 57.259 52.632 14.90 0.00 46.72 3.18
71 72 0.179073 AGGGATGAGTGTATGCGCAC 60.179 55.000 14.90 0.12 39.51 5.34
72 73 1.408969 TAGGGATGAGTGTATGCGCA 58.591 50.000 14.96 14.96 0.00 6.09
73 74 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
74 75 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
75 76 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
76 77 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
77 78 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
78 79 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
79 80 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
80 81 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
81 82 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
82 83 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
83 84 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
84 85 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
85 86 1.277842 TGTGTGTGCGTTCATAGGGAT 59.722 47.619 0.00 0.00 0.00 3.85
86 87 0.682292 TGTGTGTGCGTTCATAGGGA 59.318 50.000 0.00 0.00 0.00 4.20
87 88 0.796312 GTGTGTGTGCGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
88 89 1.194547 GTGTGTGTGTGCGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
89 90 1.864082 TGTGTGTGTGTGCGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
90 91 1.595328 GTGTGTGTGTGTGCGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
91 92 0.376852 GTGTGTGTGTGTGCGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
92 93 1.640210 GGTGTGTGTGTGTGCGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
93 94 1.061887 GGTGTGTGTGTGTGCGTTC 59.938 57.895 0.00 0.00 0.00 3.95
94 95 2.403378 GGGTGTGTGTGTGTGCGTT 61.403 57.895 0.00 0.00 0.00 4.84
95 96 1.962321 TAGGGTGTGTGTGTGTGCGT 61.962 55.000 0.00 0.00 0.00 5.24
96 97 1.227409 TAGGGTGTGTGTGTGTGCG 60.227 57.895 0.00 0.00 0.00 5.34
97 98 1.164041 GGTAGGGTGTGTGTGTGTGC 61.164 60.000 0.00 0.00 0.00 4.57
98 99 0.534203 GGGTAGGGTGTGTGTGTGTG 60.534 60.000 0.00 0.00 0.00 3.82
99 100 1.702022 GGGGTAGGGTGTGTGTGTGT 61.702 60.000 0.00 0.00 0.00 3.72
100 101 1.072505 GGGGTAGGGTGTGTGTGTG 59.927 63.158 0.00 0.00 0.00 3.82
101 102 0.191563 TAGGGGTAGGGTGTGTGTGT 59.808 55.000 0.00 0.00 0.00 3.72
102 103 1.209504 CATAGGGGTAGGGTGTGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
103 104 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
104 105 1.762957 CTCATAGGGGTAGGGTGTGTG 59.237 57.143 0.00 0.00 0.00 3.82
105 106 1.970226 GCTCATAGGGGTAGGGTGTGT 60.970 57.143 0.00 0.00 0.00 3.72
106 107 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
107 108 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
108 109 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
109 110 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
110 111 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
111 112 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
112 113 1.967066 CAGAGGTGCTCATAGGGGTAG 59.033 57.143 0.00 0.00 32.06 3.18
113 114 1.573857 TCAGAGGTGCTCATAGGGGTA 59.426 52.381 0.00 0.00 32.06 3.69
114 115 0.339859 TCAGAGGTGCTCATAGGGGT 59.660 55.000 0.00 0.00 32.06 4.95
115 116 1.047002 CTCAGAGGTGCTCATAGGGG 58.953 60.000 0.00 0.00 32.06 4.79
116 117 1.962807 CTCTCAGAGGTGCTCATAGGG 59.037 57.143 0.00 0.00 32.06 3.53
117 118 2.622942 GTCTCTCAGAGGTGCTCATAGG 59.377 54.545 0.57 0.00 32.06 2.57
118 119 3.316029 CAGTCTCTCAGAGGTGCTCATAG 59.684 52.174 0.57 0.00 32.06 2.23
119 120 3.054065 TCAGTCTCTCAGAGGTGCTCATA 60.054 47.826 0.57 0.00 32.06 2.15
120 121 2.101783 CAGTCTCTCAGAGGTGCTCAT 58.898 52.381 0.57 0.00 32.06 2.90
121 122 1.074566 TCAGTCTCTCAGAGGTGCTCA 59.925 52.381 0.57 0.00 32.06 4.26
122 123 1.745087 CTCAGTCTCTCAGAGGTGCTC 59.255 57.143 0.57 0.00 0.00 4.26
123 124 1.838112 CTCAGTCTCTCAGAGGTGCT 58.162 55.000 0.57 0.00 0.00 4.40
124 125 0.173255 GCTCAGTCTCTCAGAGGTGC 59.827 60.000 0.57 0.00 31.57 5.01
125 126 0.817013 GGCTCAGTCTCTCAGAGGTG 59.183 60.000 0.57 0.02 31.57 4.00
126 127 0.679640 CGGCTCAGTCTCTCAGAGGT 60.680 60.000 0.57 0.00 31.57 3.85
127 128 1.383456 CCGGCTCAGTCTCTCAGAGG 61.383 65.000 0.57 0.00 31.57 3.69
128 129 2.003658 GCCGGCTCAGTCTCTCAGAG 62.004 65.000 22.15 0.00 33.62 3.35
129 130 2.049185 GCCGGCTCAGTCTCTCAGA 61.049 63.158 22.15 0.00 0.00 3.27
130 131 1.674764 ATGCCGGCTCAGTCTCTCAG 61.675 60.000 29.70 0.00 0.00 3.35
131 132 0.395724 TATGCCGGCTCAGTCTCTCA 60.396 55.000 29.70 2.45 0.00 3.27
132 133 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
133 134 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
134 135 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
135 136 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
136 137 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
137 138 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
138 139 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
139 140 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
140 141 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
141 142 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
142 143 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
143 144 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
144 145 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
145 146 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
146 147 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
147 148 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
148 149 7.386299 GTGGCTTCGTAAATCTCAAGATGATAT 59.614 37.037 0.00 0.00 34.49 1.63
149 150 6.701841 GTGGCTTCGTAAATCTCAAGATGATA 59.298 38.462 0.00 0.00 34.49 2.15
150 151 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
151 152 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
152 153 4.034510 GGTGGCTTCGTAAATCTCAAGATG 59.965 45.833 0.00 0.00 34.49 2.90
153 154 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
154 155 3.596214 GGTGGCTTCGTAAATCTCAAGA 58.404 45.455 0.00 0.00 0.00 3.02
155 156 2.348666 CGGTGGCTTCGTAAATCTCAAG 59.651 50.000 0.00 0.00 0.00 3.02
156 157 2.289195 ACGGTGGCTTCGTAAATCTCAA 60.289 45.455 4.10 0.00 39.22 3.02
157 158 1.274167 ACGGTGGCTTCGTAAATCTCA 59.726 47.619 4.10 0.00 39.22 3.27
158 159 2.005971 ACGGTGGCTTCGTAAATCTC 57.994 50.000 4.10 0.00 39.22 2.75
159 160 2.159142 CCTACGGTGGCTTCGTAAATCT 60.159 50.000 12.25 0.00 41.62 2.40
160 161 2.199236 CCTACGGTGGCTTCGTAAATC 58.801 52.381 12.25 0.00 41.62 2.17
161 162 2.304751 CCTACGGTGGCTTCGTAAAT 57.695 50.000 12.25 0.00 41.62 1.40
162 163 3.818586 CCTACGGTGGCTTCGTAAA 57.181 52.632 12.25 0.00 41.62 2.01
172 173 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
175 176 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
198 199 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
199 200 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
200 201 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
201 202 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
202 203 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
203 204 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
204 205 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
205 206 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
206 207 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
207 208 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
208 209 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
209 210 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
220 221 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
221 222 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
222 223 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
223 224 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
224 225 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
225 226 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
226 227 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
227 228 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
235 236 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
236 237 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
237 238 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
238 239 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
239 240 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
240 241 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
241 242 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
242 243 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
243 244 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
244 245 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
245 246 2.105477 AGTGCTCGCATTATTCCTGGAT 59.895 45.455 0.00 0.00 0.00 3.41
246 247 1.486310 AGTGCTCGCATTATTCCTGGA 59.514 47.619 0.00 0.00 0.00 3.86
247 248 1.959042 AGTGCTCGCATTATTCCTGG 58.041 50.000 0.00 0.00 0.00 4.45
248 249 3.062763 CCTAGTGCTCGCATTATTCCTG 58.937 50.000 0.00 0.00 0.00 3.86
249 250 2.965831 TCCTAGTGCTCGCATTATTCCT 59.034 45.455 0.00 0.00 0.00 3.36
250 251 3.386768 TCCTAGTGCTCGCATTATTCC 57.613 47.619 0.00 0.00 0.00 3.01
251 252 5.931441 AAATCCTAGTGCTCGCATTATTC 57.069 39.130 0.00 0.00 0.00 1.75
252 253 7.255139 GGTTTAAATCCTAGTGCTCGCATTATT 60.255 37.037 0.00 0.00 0.00 1.40
253 254 6.204882 GGTTTAAATCCTAGTGCTCGCATTAT 59.795 38.462 0.00 0.00 0.00 1.28
254 255 5.526111 GGTTTAAATCCTAGTGCTCGCATTA 59.474 40.000 0.00 0.00 0.00 1.90
255 256 4.335594 GGTTTAAATCCTAGTGCTCGCATT 59.664 41.667 0.00 0.00 0.00 3.56
256 257 3.877508 GGTTTAAATCCTAGTGCTCGCAT 59.122 43.478 0.00 0.00 0.00 4.73
257 258 3.267483 GGTTTAAATCCTAGTGCTCGCA 58.733 45.455 0.00 0.00 0.00 5.10
258 259 2.612672 GGGTTTAAATCCTAGTGCTCGC 59.387 50.000 10.45 0.00 0.00 5.03
259 260 3.871594 CAGGGTTTAAATCCTAGTGCTCG 59.128 47.826 19.76 2.13 37.45 5.03
260 261 4.200092 CCAGGGTTTAAATCCTAGTGCTC 58.800 47.826 19.76 0.00 37.45 4.26
261 262 3.591977 ACCAGGGTTTAAATCCTAGTGCT 59.408 43.478 19.76 0.00 37.45 4.40
262 263 3.694566 CACCAGGGTTTAAATCCTAGTGC 59.305 47.826 26.40 0.00 40.97 4.40
263 264 4.270008 CCACCAGGGTTTAAATCCTAGTG 58.730 47.826 29.07 29.07 45.09 2.74
264 265 4.586306 CCACCAGGGTTTAAATCCTAGT 57.414 45.455 19.76 15.87 37.45 2.57
278 279 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
279 280 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
280 281 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
281 282 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
288 289 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
289 290 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
290 291 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
291 292 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
292 293 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
293 294 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
294 295 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
295 296 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
296 297 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
297 298 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
298 299 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
299 300 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
300 301 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
301 302 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
302 303 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
303 304 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
304 305 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
305 306 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
306 307 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
307 308 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
308 309 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
309 310 2.495669 CAAACCTGTGGTTGAGTTGGTT 59.504 45.455 2.49 0.00 46.20 3.67
310 311 2.099405 CAAACCTGTGGTTGAGTTGGT 58.901 47.619 2.49 0.00 46.20 3.67
311 312 1.202405 GCAAACCTGTGGTTGAGTTGG 60.202 52.381 2.49 0.00 46.20 3.77
312 313 1.533756 CGCAAACCTGTGGTTGAGTTG 60.534 52.381 2.49 0.00 46.20 3.16
313 314 0.738389 CGCAAACCTGTGGTTGAGTT 59.262 50.000 2.49 0.00 46.20 3.01
314 315 1.724582 GCGCAAACCTGTGGTTGAGT 61.725 55.000 0.30 0.00 46.20 3.41
315 316 1.008538 GCGCAAACCTGTGGTTGAG 60.009 57.895 0.30 0.00 46.20 3.02
316 317 0.179043 TAGCGCAAACCTGTGGTTGA 60.179 50.000 11.47 0.00 46.20 3.18
317 318 0.881118 ATAGCGCAAACCTGTGGTTG 59.119 50.000 11.47 0.00 46.20 3.77
319 320 0.676782 GGATAGCGCAAACCTGTGGT 60.677 55.000 11.47 0.00 45.40 4.16
320 321 0.392998 AGGATAGCGCAAACCTGTGG 60.393 55.000 11.47 0.00 33.40 4.17
321 322 0.729116 CAGGATAGCGCAAACCTGTG 59.271 55.000 26.84 12.49 43.16 3.66
322 323 0.392998 CCAGGATAGCGCAAACCTGT 60.393 55.000 29.95 7.08 45.65 4.00
323 324 0.107703 TCCAGGATAGCGCAAACCTG 60.108 55.000 27.65 27.65 46.37 4.00
324 325 0.179000 CTCCAGGATAGCGCAAACCT 59.821 55.000 11.47 11.96 0.00 3.50
339 340 3.531538 GAAACGTGATTAGCATCCTCCA 58.468 45.455 0.00 0.00 0.00 3.86
435 436 5.767269 CTCGTGTTCATAGCTCATCACTAT 58.233 41.667 0.00 0.00 0.00 2.12
513 852 9.595823 GTGTGGAAAGTAAGCTTGATACTAATA 57.404 33.333 9.86 0.00 34.71 0.98
554 896 4.181578 TCCATCGCTGTAAAGTAAGCTTC 58.818 43.478 0.00 0.00 37.27 3.86
569 911 3.601443 ATAAGGAGCTGTATCCATCGC 57.399 47.619 0.00 0.00 42.26 4.58
679 1237 2.292016 CGCATACCGAATTTTATGCCCA 59.708 45.455 16.17 0.00 45.25 5.36
712 2535 1.063649 CACGTACTCATCCGGGTCG 59.936 63.158 0.00 0.00 0.00 4.79
839 2676 3.630769 GTCTTTCACCGACCTTCCTTTTT 59.369 43.478 0.00 0.00 0.00 1.94
961 2836 7.061688 ACGTAGGGCTATATTTATAGGAGGAG 58.938 42.308 6.72 0.00 36.90 3.69
1229 3182 7.770897 GGGACAAGATTCAAGTGATGTAGTAAT 59.229 37.037 0.00 0.00 0.00 1.89
1230 3183 7.103641 GGGACAAGATTCAAGTGATGTAGTAA 58.896 38.462 0.00 0.00 0.00 2.24
1244 3197 4.593956 ACATGAAGAAGGGGACAAGATTC 58.406 43.478 0.00 0.00 0.00 2.52
1256 3209 3.909776 TGCTGCAAGAACATGAAGAAG 57.090 42.857 0.00 0.00 34.07 2.85
1643 3676 2.012673 GCAAGGACAAGGCAGTAGATG 58.987 52.381 0.00 0.00 0.00 2.90
1739 3774 0.883833 CGCCAGAAGCAAAGGTCATT 59.116 50.000 0.00 0.00 44.04 2.57
1919 3965 3.834813 TGTAGAAGCCAGTCTCAATGTCT 59.165 43.478 0.00 0.00 0.00 3.41
1965 4013 4.322080 TGTATGTGTGAGTATGCTAGCC 57.678 45.455 13.29 0.00 0.00 3.93
2043 4096 2.472861 CCGACATAAGTATCAAGCTGCG 59.527 50.000 0.00 0.00 0.00 5.18
2066 4119 1.517257 GGATCTCAGTCGCCACGTG 60.517 63.158 9.08 9.08 0.00 4.49
2178 4237 2.094130 TCACACGTGGTGTAGTTGTTCA 60.094 45.455 21.57 0.00 45.65 3.18
2279 4338 2.565391 TGAAAGCGGTGTAGAGATCCAA 59.435 45.455 0.00 0.00 0.00 3.53
2284 4343 2.030185 GTCAGTGAAAGCGGTGTAGAGA 60.030 50.000 0.00 0.00 0.00 3.10
2341 4400 5.001232 AGATTTGGCTTACAACATACACGT 58.999 37.500 0.00 0.00 39.19 4.49
2419 4485 3.129502 CCTCCACCTGCATGCGTG 61.130 66.667 14.09 15.34 0.00 5.34
2420 4486 4.415150 CCCTCCACCTGCATGCGT 62.415 66.667 14.09 2.34 0.00 5.24
2421 4487 4.415150 ACCCTCCACCTGCATGCG 62.415 66.667 14.09 7.87 0.00 4.73
2440 4506 3.822735 CCTTGAAATTCTTGGACTCAGCA 59.177 43.478 0.00 0.00 0.00 4.41
2548 4614 4.130118 ACATCTTGTCAGGAGTTTCACAC 58.870 43.478 0.00 0.00 0.00 3.82
2626 4692 1.202915 TCCATCAAAGGCTGTTGCAGA 60.203 47.619 0.00 0.00 41.91 4.26
2684 4777 3.367292 CCGCATCATGCAACCTAGTTTTT 60.367 43.478 11.00 0.00 45.36 1.94
2685 4778 2.164219 CCGCATCATGCAACCTAGTTTT 59.836 45.455 11.00 0.00 45.36 2.43
2686 4779 1.745087 CCGCATCATGCAACCTAGTTT 59.255 47.619 11.00 0.00 45.36 2.66
2687 4780 1.382522 CCGCATCATGCAACCTAGTT 58.617 50.000 11.00 0.00 45.36 2.24
2688 4781 1.097547 GCCGCATCATGCAACCTAGT 61.098 55.000 11.00 0.00 45.36 2.57
2689 4782 1.096967 TGCCGCATCATGCAACCTAG 61.097 55.000 11.00 0.00 45.36 3.02
2690 4783 1.077858 TGCCGCATCATGCAACCTA 60.078 52.632 11.00 0.00 45.36 3.08
2691 4784 2.361483 TGCCGCATCATGCAACCT 60.361 55.556 11.00 0.00 45.36 3.50
2692 4785 2.103538 CTGCCGCATCATGCAACC 59.896 61.111 11.00 0.00 45.36 3.77
2693 4786 2.552585 AAGCTGCCGCATCATGCAAC 62.553 55.000 11.00 0.69 45.36 4.17
2705 4825 2.192187 GGCTAGCCATCAAGCTGCC 61.192 63.158 29.33 9.93 44.67 4.85
2741 4861 9.904198 ATGCCATTTATAAAGCTAACCAAAAAT 57.096 25.926 3.94 0.00 0.00 1.82
2746 4866 5.507149 CGCATGCCATTTATAAAGCTAACCA 60.507 40.000 13.15 0.00 0.00 3.67
2824 4945 5.084818 ACATCCGTTCATGTCTCATTACA 57.915 39.130 0.00 0.00 30.76 2.41
2825 4946 7.534085 TTAACATCCGTTCATGTCTCATTAC 57.466 36.000 0.00 0.00 35.87 1.89
2826 4947 8.731275 AATTAACATCCGTTCATGTCTCATTA 57.269 30.769 0.00 0.00 35.87 1.90
2843 4989 8.704668 GGGGATAAACCATGAGAAAATTAACAT 58.295 33.333 0.00 0.00 41.20 2.71
2893 5202 8.448008 AGATATTCACCCACATATACAACCAAT 58.552 33.333 0.00 0.00 0.00 3.16
3024 5340 0.438830 GGCAGACGAACGAACATGTC 59.561 55.000 0.00 0.00 0.00 3.06
3030 5347 1.375396 CCATGGGCAGACGAACGAA 60.375 57.895 2.85 0.00 0.00 3.85
3050 5367 1.876497 GCAACCCCAACATGCACGAT 61.876 55.000 0.00 0.00 39.81 3.73
3090 5407 2.418628 CGAACATGGCCTTCGTTAACAT 59.581 45.455 15.47 0.00 36.57 2.71
3091 5408 1.801771 CGAACATGGCCTTCGTTAACA 59.198 47.619 15.47 0.00 36.57 2.41
3127 5444 0.185901 AGCCTTCTTTTCAGTGCCCA 59.814 50.000 0.00 0.00 0.00 5.36
3179 5510 1.854664 CAAACAATGTGCGCAAGGC 59.145 52.632 14.00 0.00 43.96 4.35
3292 5625 0.599204 GTGAAGACGTGAAAGCCGGA 60.599 55.000 5.05 0.00 0.00 5.14
3344 5677 3.924073 CACAAGCAACGCTACTGTATGTA 59.076 43.478 0.00 0.00 38.25 2.29
3347 5680 3.040147 ACACAAGCAACGCTACTGTAT 57.960 42.857 0.00 0.00 38.25 2.29
3349 5682 2.519377 TACACAAGCAACGCTACTGT 57.481 45.000 0.00 0.00 38.25 3.55
3364 5697 6.531948 GTGGAGACAAGATGTAGTTCATACAC 59.468 42.308 0.00 0.00 44.98 2.90
3453 5985 0.981277 AACTCCCTACCATCCCCGTG 60.981 60.000 0.00 0.00 0.00 4.94
3488 6020 1.394917 CATGCCAAGTCAGTTCGCTAC 59.605 52.381 0.00 0.00 0.00 3.58
3545 6077 6.477688 CGTCTCCCGCTAAATGAAAATTACTA 59.522 38.462 0.00 0.00 0.00 1.82
3546 6078 5.293569 CGTCTCCCGCTAAATGAAAATTACT 59.706 40.000 0.00 0.00 0.00 2.24
3547 6079 5.292589 TCGTCTCCCGCTAAATGAAAATTAC 59.707 40.000 0.00 0.00 36.19 1.89
3548 6080 5.421277 TCGTCTCCCGCTAAATGAAAATTA 58.579 37.500 0.00 0.00 36.19 1.40
3550 6082 3.869065 TCGTCTCCCGCTAAATGAAAAT 58.131 40.909 0.00 0.00 36.19 1.82
3551 6083 3.322211 TCGTCTCCCGCTAAATGAAAA 57.678 42.857 0.00 0.00 36.19 2.29
3555 6087 3.002348 GGAAATTCGTCTCCCGCTAAATG 59.998 47.826 0.00 0.00 36.19 2.32
3556 6088 3.118371 AGGAAATTCGTCTCCCGCTAAAT 60.118 43.478 0.00 0.00 36.19 1.40
3569 6101 0.989890 GTCGTGGTCGAGGAAATTCG 59.010 55.000 0.00 0.00 46.96 3.34
3595 6127 3.165058 TGAGATACATGAAGTCACCGC 57.835 47.619 0.00 0.00 0.00 5.68
3605 6137 7.065085 ACCGAAAAACAGATCTTGAGATACATG 59.935 37.037 0.00 0.00 34.37 3.21
3619 6151 1.491332 TCCAAGGGACCGAAAAACAGA 59.509 47.619 0.00 0.00 0.00 3.41
3620 6152 1.880027 CTCCAAGGGACCGAAAAACAG 59.120 52.381 0.00 0.00 0.00 3.16
3625 6157 1.486145 GGACCTCCAAGGGACCGAAA 61.486 60.000 0.00 0.00 40.58 3.46
3627 6159 2.284405 GGACCTCCAAGGGACCGA 60.284 66.667 0.00 0.00 40.58 4.69
3639 6171 3.274153 ACACAGTACCCCTATAAGGACCT 59.726 47.826 0.00 0.00 37.67 3.85
3649 6181 0.977395 GAGCAGAACACAGTACCCCT 59.023 55.000 0.00 0.00 0.00 4.79
3652 6184 1.419374 CACGAGCAGAACACAGTACC 58.581 55.000 0.00 0.00 0.00 3.34
3656 6188 0.940126 AAAGCACGAGCAGAACACAG 59.060 50.000 7.77 0.00 45.49 3.66
3662 6194 0.179086 TGACACAAAGCACGAGCAGA 60.179 50.000 7.77 0.00 45.49 4.26
3663 6195 0.234106 CTGACACAAAGCACGAGCAG 59.766 55.000 7.77 0.00 45.49 4.24
3680 6212 3.243401 GCCTAAACAACCTTGGTTGACTG 60.243 47.826 31.71 19.47 38.77 3.51
3686 6219 3.075432 ACCATAGCCTAAACAACCTTGGT 59.925 43.478 0.00 0.00 0.00 3.67
3705 6238 4.521639 ACTGTCTTCGAGTTGTATACACCA 59.478 41.667 4.68 0.00 0.00 4.17
3711 6244 3.128242 CCCGTACTGTCTTCGAGTTGTAT 59.872 47.826 0.00 0.00 0.00 2.29
3714 6247 1.402456 CCCCGTACTGTCTTCGAGTTG 60.402 57.143 0.00 0.00 0.00 3.16
3729 6262 1.676303 CGTATTGGTTTGGCCCCGT 60.676 57.895 0.00 0.00 36.04 5.28
3730 6263 2.411504 CCGTATTGGTTTGGCCCCG 61.412 63.158 0.00 0.00 36.04 5.73
3744 6277 1.658102 GACGTTGTGTCGCACCGTA 60.658 57.895 9.06 0.00 37.96 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.