Multiple sequence alignment - TraesCS7A01G536300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G536300 chr7A 100.000 3671 0 0 1 3671 713743006 713746676 0.000000e+00 6780.0
1 TraesCS7A01G536300 chr7A 92.474 1342 67 12 1545 2883 713790392 713791702 0.000000e+00 1888.0
2 TraesCS7A01G536300 chr7A 90.340 1263 77 19 1729 2981 713863971 713865198 0.000000e+00 1615.0
3 TraesCS7A01G536300 chr7A 91.993 562 26 14 908 1461 713789783 713790333 0.000000e+00 771.0
4 TraesCS7A01G536300 chr7A 74.687 1197 208 50 1612 2784 713614975 713616100 9.350000e-121 444.0
5 TraesCS7A01G536300 chr7A 92.500 120 6 1 3306 3422 713791767 713791886 6.300000e-38 169.0
6 TraesCS7A01G536300 chr7A 94.937 79 4 0 2922 3000 713791701 713791779 1.380000e-24 124.0
7 TraesCS7A01G536300 chr7A 78.713 202 31 9 1243 1444 714731614 714731425 1.380000e-24 124.0
8 TraesCS7A01G536300 chr7A 77.451 204 30 13 1243 1444 714725520 714725331 1.390000e-19 108.0
9 TraesCS7A01G536300 chr7A 90.566 53 1 3 1457 1509 206316672 206316720 2.370000e-07 67.6
10 TraesCS7A01G536300 chr7A 90.566 53 1 2 1457 1509 220747919 220747871 2.370000e-07 67.6
11 TraesCS7A01G536300 chr7D 88.900 2045 115 42 972 2981 619404605 619406572 0.000000e+00 2416.0
12 TraesCS7A01G536300 chr7D 86.930 1821 140 41 1205 3000 619563915 619565662 0.000000e+00 1954.0
13 TraesCS7A01G536300 chr7D 91.493 576 38 9 313 879 619400833 619401406 0.000000e+00 782.0
14 TraesCS7A01G536300 chr7D 96.825 315 9 1 1 314 619400361 619400675 3.250000e-145 525.0
15 TraesCS7A01G536300 chr7D 91.803 366 30 0 3306 3671 619565650 619566015 9.090000e-141 510.0
16 TraesCS7A01G536300 chr7D 93.769 321 10 4 3322 3633 619406803 619407122 1.190000e-129 473.0
17 TraesCS7A01G536300 chr7D 93.750 304 17 2 3004 3306 82851434 82851132 4.320000e-124 455.0
18 TraesCS7A01G536300 chr7D 93.204 309 19 2 3005 3312 548022686 548022379 1.550000e-123 453.0
19 TraesCS7A01G536300 chr7D 75.000 1092 188 46 1612 2683 619200935 619201961 3.390000e-115 425.0
20 TraesCS7A01G536300 chr7D 74.372 1194 215 44 1612 2783 619231510 619232634 3.390000e-115 425.0
21 TraesCS7A01G536300 chr7D 77.885 208 34 9 1237 1444 620213971 620214166 6.440000e-23 119.0
22 TraesCS7A01G536300 chr7D 74.455 321 42 23 1127 1444 619582358 619582641 6.490000e-18 102.0
23 TraesCS7A01G536300 chr7B 93.584 904 40 11 1 887 715294443 715295345 0.000000e+00 1332.0
24 TraesCS7A01G536300 chr7B 94.408 304 16 1 3004 3306 731129526 731129223 2.000000e-127 466.0
25 TraesCS7A01G536300 chr7B 94.118 306 17 1 3001 3305 728122407 728122712 7.180000e-127 464.0
26 TraesCS7A01G536300 chr7B 74.415 1196 213 48 1612 2784 714759417 714760542 9.420000e-116 427.0
27 TraesCS7A01G536300 chr7B 74.043 1202 217 49 1612 2789 714740170 714741300 1.590000e-108 403.0
28 TraesCS7A01G536300 chr7B 79.208 202 30 9 1243 1444 716275701 716275512 2.980000e-26 130.0
29 TraesCS7A01G536300 chr2A 94.079 304 17 1 3004 3306 434580262 434579959 9.290000e-126 460.0
30 TraesCS7A01G536300 chr2A 93.443 305 19 1 3004 3307 51641554 51641250 5.590000e-123 451.0
31 TraesCS7A01G536300 chr2B 94.059 303 16 2 3004 3305 142654825 142654524 3.340000e-125 459.0
32 TraesCS7A01G536300 chr3B 93.182 308 19 2 3001 3307 367490642 367490948 5.590000e-123 451.0
33 TraesCS7A01G536300 chr3B 91.358 324 25 3 2992 3314 473229529 473229850 1.210000e-119 440.0
34 TraesCS7A01G536300 chr3B 92.308 52 1 1 1461 1512 822885400 822885352 1.830000e-08 71.3
35 TraesCS7A01G536300 chrUn 90.272 257 21 3 2728 2981 341062934 341062679 2.110000e-87 333.0
36 TraesCS7A01G536300 chrUn 74.603 315 40 23 1133 1444 93249465 93249188 6.490000e-18 102.0
37 TraesCS7A01G536300 chr5D 95.918 49 0 2 1465 1512 435520346 435520393 1.090000e-10 78.7
38 TraesCS7A01G536300 chr1D 95.833 48 1 1 1465 1512 400113821 400113775 3.930000e-10 76.8
39 TraesCS7A01G536300 chr4D 90.566 53 2 1 1465 1517 455531461 455531412 2.370000e-07 67.6
40 TraesCS7A01G536300 chr4A 90.566 53 2 1 1465 1517 12401719 12401670 2.370000e-07 67.6
41 TraesCS7A01G536300 chr2D 90.566 53 1 2 1459 1511 14893782 14893734 2.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G536300 chr7A 713743006 713746676 3670 False 6780 6780 100.00000 1 3671 1 chr7A.!!$F3 3670
1 TraesCS7A01G536300 chr7A 713863971 713865198 1227 False 1615 1615 90.34000 1729 2981 1 chr7A.!!$F4 1252
2 TraesCS7A01G536300 chr7A 713789783 713791886 2103 False 738 1888 92.97600 908 3422 4 chr7A.!!$F5 2514
3 TraesCS7A01G536300 chr7A 713614975 713616100 1125 False 444 444 74.68700 1612 2784 1 chr7A.!!$F2 1172
4 TraesCS7A01G536300 chr7D 619563915 619566015 2100 False 1232 1954 89.36650 1205 3671 2 chr7D.!!$F6 2466
5 TraesCS7A01G536300 chr7D 619400361 619407122 6761 False 1049 2416 92.74675 1 3633 4 chr7D.!!$F5 3632
6 TraesCS7A01G536300 chr7D 619200935 619201961 1026 False 425 425 75.00000 1612 2683 1 chr7D.!!$F1 1071
7 TraesCS7A01G536300 chr7D 619231510 619232634 1124 False 425 425 74.37200 1612 2783 1 chr7D.!!$F2 1171
8 TraesCS7A01G536300 chr7B 715294443 715295345 902 False 1332 1332 93.58400 1 887 1 chr7B.!!$F3 886
9 TraesCS7A01G536300 chr7B 714759417 714760542 1125 False 427 427 74.41500 1612 2784 1 chr7B.!!$F2 1172
10 TraesCS7A01G536300 chr7B 714740170 714741300 1130 False 403 403 74.04300 1612 2789 1 chr7B.!!$F1 1177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 802 0.322008 CAGGCTCTGGTTGAAGTCCC 60.322 60.0 0.00 0.0 0.0 4.46 F
1631 4963 0.112995 TTGCAGCAAGGATCTTGGGT 59.887 50.0 2.83 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 5590 0.177141 GGTCCAGCATGTAGGCGTTA 59.823 55.0 0.0 0.0 39.27 3.18 R
3060 6959 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 5.704354 TGGGCATCAGGTATGTAAATGATT 58.296 37.500 0.00 0.00 37.93 2.57
295 297 3.127548 CCTTCTTCATGTAAGTGCGCAAT 59.872 43.478 14.00 8.77 36.51 3.56
437 599 0.597118 GCTATGAGCAGTCGAGCCAG 60.597 60.000 0.00 0.00 41.89 4.85
445 607 1.013005 CAGTCGAGCCAGTGCAAGAG 61.013 60.000 0.00 0.00 41.13 2.85
461 623 2.919856 AGCACGAGGGACAGCAGT 60.920 61.111 0.00 0.00 0.00 4.40
476 638 0.459237 GCAGTGTCAGCTACGCATCT 60.459 55.000 8.79 0.00 41.29 2.90
481 643 3.012399 CAGCTACGCATCTGCTGC 58.988 61.111 0.00 0.00 45.76 5.25
508 670 1.633774 GTGGACAGTCCTGGAGAAGA 58.366 55.000 20.82 0.00 37.46 2.87
509 671 1.971357 GTGGACAGTCCTGGAGAAGAA 59.029 52.381 20.82 0.00 37.46 2.52
543 705 1.405821 CAAAACGTGGTTTGCTGGGTA 59.594 47.619 0.00 0.00 35.80 3.69
544 706 1.026584 AAACGTGGTTTGCTGGGTAC 58.973 50.000 0.00 0.00 34.23 3.34
592 754 1.080569 GTTGGCTTGCAATCACCGG 60.081 57.895 0.00 0.00 0.00 5.28
620 782 9.690434 GCTTTCTGTCGAACTTTGTAATAATAG 57.310 33.333 0.00 0.00 0.00 1.73
623 785 8.407457 TCTGTCGAACTTTGTAATAATAGCAG 57.593 34.615 0.00 0.00 0.00 4.24
640 802 0.322008 CAGGCTCTGGTTGAAGTCCC 60.322 60.000 0.00 0.00 0.00 4.46
646 808 3.451178 GCTCTGGTTGAAGTCCCATAGTA 59.549 47.826 0.00 0.00 29.98 1.82
753 915 5.696724 TCCAGCAAAAAGAAAACGTTCAAAA 59.303 32.000 0.00 0.00 36.09 2.44
802 964 7.555087 TCTGAAAATGTTTGATGGTCAAAACT 58.445 30.769 6.69 0.00 46.53 2.66
829 1009 3.506108 GCATCGTGCATCCTGCTT 58.494 55.556 9.33 0.00 45.31 3.91
830 1010 1.063649 GCATCGTGCATCCTGCTTG 59.936 57.895 9.33 0.00 45.31 4.01
831 1011 1.063649 CATCGTGCATCCTGCTTGC 59.936 57.895 0.00 0.00 45.31 4.01
844 1024 1.658409 GCTTGCAGCAACAACGGTC 60.658 57.895 2.83 0.00 41.89 4.79
845 1025 1.726865 CTTGCAGCAACAACGGTCA 59.273 52.632 2.83 0.00 0.00 4.02
847 1027 0.743688 TTGCAGCAACAACGGTCAAT 59.256 45.000 2.83 0.00 0.00 2.57
860 1040 2.897969 ACGGTCAATCCTTGTAGTGTCT 59.102 45.455 0.00 0.00 0.00 3.41
873 1053 2.089349 GTGTCTCGCGTCTTGCCTC 61.089 63.158 5.77 0.00 42.08 4.70
886 1066 2.046507 GCCTCTGCAGGAGTGGTG 60.047 66.667 15.13 0.00 43.65 4.17
887 1067 2.046507 CCTCTGCAGGAGTGGTGC 60.047 66.667 15.13 0.00 43.65 5.01
888 1068 2.591072 CCTCTGCAGGAGTGGTGCT 61.591 63.158 15.13 0.00 43.65 4.40
890 1070 2.359602 CTGCAGGAGTGGTGCTGG 60.360 66.667 5.57 0.00 42.29 4.85
893 1073 3.957586 CAGGAGTGGTGCTGGCCA 61.958 66.667 4.71 4.71 38.45 5.36
894 1074 2.937689 AGGAGTGGTGCTGGCCAT 60.938 61.111 5.51 0.00 41.08 4.40
899 1079 2.992689 TGGTGCTGGCCATTGCAG 60.993 61.111 19.26 1.92 40.06 4.41
900 1080 3.766691 GGTGCTGGCCATTGCAGG 61.767 66.667 19.26 1.12 40.06 4.85
901 1081 2.677524 GTGCTGGCCATTGCAGGA 60.678 61.111 19.26 0.00 40.06 3.86
903 1083 2.362120 GCTGGCCATTGCAGGAGT 60.362 61.111 5.51 0.00 40.13 3.85
905 1085 2.036098 TGGCCATTGCAGGAGTGG 59.964 61.111 0.00 0.00 40.13 4.00
1016 4305 1.079127 CCATGAAGCTTCGTCCGGT 60.079 57.895 18.41 0.00 0.00 5.28
1059 4348 3.881089 TCGTGCTTCTCTTCGATGGTATA 59.119 43.478 0.00 0.00 0.00 1.47
1060 4349 4.519350 TCGTGCTTCTCTTCGATGGTATAT 59.481 41.667 0.00 0.00 0.00 0.86
1061 4350 5.704053 TCGTGCTTCTCTTCGATGGTATATA 59.296 40.000 0.00 0.00 0.00 0.86
1062 4351 6.374613 TCGTGCTTCTCTTCGATGGTATATAT 59.625 38.462 0.00 0.00 0.00 0.86
1063 4352 7.551617 TCGTGCTTCTCTTCGATGGTATATATA 59.448 37.037 0.00 0.00 0.00 0.86
1064 4353 7.640630 CGTGCTTCTCTTCGATGGTATATATAC 59.359 40.741 13.60 13.60 0.00 1.47
1065 4354 8.679100 GTGCTTCTCTTCGATGGTATATATACT 58.321 37.037 19.78 3.90 33.81 2.12
1066 4355 9.901172 TGCTTCTCTTCGATGGTATATATACTA 57.099 33.333 19.78 15.60 33.81 1.82
1123 4422 4.642429 TGCCAAACCTTCTTCTCTTCTAC 58.358 43.478 0.00 0.00 0.00 2.59
1129 4434 4.826556 ACCTTCTTCTCTTCTACATGCAC 58.173 43.478 0.00 0.00 0.00 4.57
1131 4436 4.489810 CTTCTTCTCTTCTACATGCACGT 58.510 43.478 0.00 0.00 0.00 4.49
1133 4438 4.982999 TCTTCTCTTCTACATGCACGTAC 58.017 43.478 0.00 0.00 0.00 3.67
1174 4483 7.013750 ACACACATGATCGATCTACTCTACATT 59.986 37.037 25.02 0.00 0.00 2.71
1216 4525 2.847234 AGGCACACCCTCCGTCAA 60.847 61.111 0.00 0.00 41.21 3.18
1515 4829 7.534723 TTCTTTACAGAGGAAGTACTTAGCA 57.465 36.000 8.42 0.00 0.00 3.49
1524 4838 5.516984 AGGAAGTACTTAGCAAGCTAGGTA 58.483 41.667 16.96 16.96 39.18 3.08
1570 4898 8.082852 ACATGTATAATCCTACTTCTAAGCACG 58.917 37.037 0.00 0.00 0.00 5.34
1631 4963 0.112995 TTGCAGCAAGGATCTTGGGT 59.887 50.000 2.83 0.00 0.00 4.51
1703 5035 4.778143 ACCGGCATGACCTTCGCC 62.778 66.667 0.00 0.00 42.64 5.54
1706 5038 2.586792 GGCATGACCTTCGCCTCT 59.413 61.111 0.00 0.00 42.78 3.69
1708 5040 1.219124 GCATGACCTTCGCCTCTGA 59.781 57.895 0.00 0.00 0.00 3.27
1892 5233 5.816955 AGAACTCCTTCTTGAGTAGCTTT 57.183 39.130 0.00 0.00 44.68 3.51
1945 5290 8.590719 TCATCACACGTACAAAATAAACACTA 57.409 30.769 0.00 0.00 0.00 2.74
2003 5351 7.081976 CCACCTTACCAATTTAACTTTTCTCG 58.918 38.462 0.00 0.00 0.00 4.04
2004 5352 6.581166 CACCTTACCAATTTAACTTTTCTCGC 59.419 38.462 0.00 0.00 0.00 5.03
2005 5353 6.263617 ACCTTACCAATTTAACTTTTCTCGCA 59.736 34.615 0.00 0.00 0.00 5.10
2006 5354 7.039993 ACCTTACCAATTTAACTTTTCTCGCAT 60.040 33.333 0.00 0.00 0.00 4.73
2042 5390 1.730064 CTTACATTGGGAACGTGACGG 59.270 52.381 10.66 0.00 0.00 4.79
2071 5419 1.202568 CAAGAACGTCGTGCAGCTG 59.797 57.895 10.11 10.11 0.00 4.24
2146 5494 3.211865 CACGCCTATGAGGACTAGTACA 58.788 50.000 8.10 3.68 37.67 2.90
2239 5587 2.339728 TGGGCAAAAAGAATAACGCG 57.660 45.000 3.53 3.53 0.00 6.01
2240 5588 1.880675 TGGGCAAAAAGAATAACGCGA 59.119 42.857 15.93 0.00 0.00 5.87
2241 5589 2.293677 TGGGCAAAAAGAATAACGCGAA 59.706 40.909 15.93 0.00 0.00 4.70
2242 5590 3.057174 TGGGCAAAAAGAATAACGCGAAT 60.057 39.130 15.93 2.32 0.00 3.34
2243 5591 4.156190 TGGGCAAAAAGAATAACGCGAATA 59.844 37.500 15.93 5.90 0.00 1.75
2244 5592 5.096849 GGGCAAAAAGAATAACGCGAATAA 58.903 37.500 15.93 0.00 0.00 1.40
2245 5593 5.004061 GGGCAAAAAGAATAACGCGAATAAC 59.996 40.000 15.93 0.66 0.00 1.89
2246 5594 5.275096 GGCAAAAAGAATAACGCGAATAACG 60.275 40.000 15.93 0.00 45.66 3.18
2310 5658 1.837439 TCATGCCCCAGGTAAGTAGTG 59.163 52.381 0.00 0.00 0.00 2.74
2364 5712 9.256228 ACTAAATCTGGTTTCTAGTGTATGAGA 57.744 33.333 0.00 0.00 0.00 3.27
2365 5713 9.743057 CTAAATCTGGTTTCTAGTGTATGAGAG 57.257 37.037 0.00 0.00 0.00 3.20
2366 5714 5.584253 TCTGGTTTCTAGTGTATGAGAGC 57.416 43.478 0.00 0.00 0.00 4.09
2404 5753 8.426489 ACGTGTTGGGACTATTTATACATACAT 58.574 33.333 0.00 0.00 0.00 2.29
2405 5754 9.917129 CGTGTTGGGACTATTTATACATACATA 57.083 33.333 0.00 0.00 0.00 2.29
2523 5873 0.525668 GTGGACAGCAGGACGATACG 60.526 60.000 0.00 0.00 0.00 3.06
2809 6489 8.833493 TCTTTCACTGCCTAACTTTTAGTTTAC 58.167 33.333 0.00 0.00 39.51 2.01
2875 6557 6.488769 TTACTCCTGTTAGAAAGTTGGTCA 57.511 37.500 0.00 0.00 0.00 4.02
2881 6563 5.277974 CCTGTTAGAAAGTTGGTCATGTGTG 60.278 44.000 0.00 0.00 0.00 3.82
2967 6649 3.056749 GGAACATCACTACTTGGACGAGT 60.057 47.826 0.00 0.00 0.00 4.18
2999 6898 2.489938 TGTCCAGAACATAGCAACCC 57.510 50.000 0.00 0.00 31.20 4.11
3000 6899 1.004277 TGTCCAGAACATAGCAACCCC 59.996 52.381 0.00 0.00 31.20 4.95
3001 6900 0.251916 TCCAGAACATAGCAACCCCG 59.748 55.000 0.00 0.00 0.00 5.73
3002 6901 0.035439 CCAGAACATAGCAACCCCGT 60.035 55.000 0.00 0.00 0.00 5.28
3003 6902 1.086696 CAGAACATAGCAACCCCGTG 58.913 55.000 0.00 0.00 0.00 4.94
3004 6903 0.981183 AGAACATAGCAACCCCGTGA 59.019 50.000 0.00 0.00 0.00 4.35
3005 6904 1.349688 AGAACATAGCAACCCCGTGAA 59.650 47.619 0.00 0.00 0.00 3.18
3006 6905 1.467342 GAACATAGCAACCCCGTGAAC 59.533 52.381 0.00 0.00 0.00 3.18
3007 6906 0.322187 ACATAGCAACCCCGTGAACC 60.322 55.000 0.00 0.00 0.00 3.62
3008 6907 0.322098 CATAGCAACCCCGTGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
3009 6908 0.402504 ATAGCAACCCCGTGAACCAA 59.597 50.000 0.00 0.00 0.00 3.67
3010 6909 0.535553 TAGCAACCCCGTGAACCAAC 60.536 55.000 0.00 0.00 0.00 3.77
3011 6910 2.852180 GCAACCCCGTGAACCAACC 61.852 63.158 0.00 0.00 0.00 3.77
3012 6911 1.152839 CAACCCCGTGAACCAACCT 60.153 57.895 0.00 0.00 0.00 3.50
3013 6912 1.152839 AACCCCGTGAACCAACCTG 60.153 57.895 0.00 0.00 0.00 4.00
3014 6913 1.928714 AACCCCGTGAACCAACCTGT 61.929 55.000 0.00 0.00 0.00 4.00
3015 6914 1.896660 CCCCGTGAACCAACCTGTG 60.897 63.158 0.00 0.00 0.00 3.66
3028 6927 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
3029 6928 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
3030 6929 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
3031 6930 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
3032 6931 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
3033 6932 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
3034 6933 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
3036 6935 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
3037 6936 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
3038 6937 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
3039 6938 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
3040 6939 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
3041 6940 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
3042 6941 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
3043 6942 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
3044 6943 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
3045 6944 3.630311 GGTTAGAGGGACTGTGGTATCCT 60.630 52.174 0.00 0.00 41.55 3.24
3046 6945 2.463047 AGAGGGACTGTGGTATCCTC 57.537 55.000 0.00 0.00 41.55 3.71
3047 6946 1.646447 AGAGGGACTGTGGTATCCTCA 59.354 52.381 9.88 0.00 42.86 3.86
3048 6947 2.035632 GAGGGACTGTGGTATCCTCAG 58.964 57.143 13.90 13.90 46.71 3.35
3049 6948 0.466124 GGGACTGTGGTATCCTCAGC 59.534 60.000 14.99 9.44 45.66 4.26
3050 6949 0.466124 GGACTGTGGTATCCTCAGCC 59.534 60.000 14.99 13.28 45.66 4.85
3051 6950 0.466124 GACTGTGGTATCCTCAGCCC 59.534 60.000 14.99 6.48 45.66 5.19
3052 6951 1.330655 ACTGTGGTATCCTCAGCCCG 61.331 60.000 14.99 0.00 45.66 6.13
3053 6952 2.109181 GTGGTATCCTCAGCCCGC 59.891 66.667 0.00 0.00 0.00 6.13
3054 6953 3.161450 TGGTATCCTCAGCCCGCC 61.161 66.667 0.00 0.00 0.00 6.13
3055 6954 3.161450 GGTATCCTCAGCCCGCCA 61.161 66.667 0.00 0.00 0.00 5.69
3056 6955 2.423446 GTATCCTCAGCCCGCCAG 59.577 66.667 0.00 0.00 0.00 4.85
3057 6956 2.844362 TATCCTCAGCCCGCCAGG 60.844 66.667 0.00 0.00 39.47 4.45
3067 6966 3.603365 CCGCCAGGGTTCAAATCC 58.397 61.111 0.00 0.00 0.00 3.01
3068 6967 1.000896 CCGCCAGGGTTCAAATCCT 60.001 57.895 0.00 0.00 41.23 3.24
3073 6972 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
3074 6973 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
3075 6974 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
3076 6975 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
3077 6976 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
3078 6977 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
3079 6978 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
3080 6979 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
3081 6980 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
3082 6981 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
3083 6982 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
3084 6983 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
3085 6984 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
3086 6985 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
3087 6986 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
3088 6987 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
3089 6988 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
3090 6989 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
3091 6990 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
3092 6991 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
3093 6992 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
3094 6993 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
3095 6994 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
3096 6995 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
3097 6996 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
3098 6997 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
3099 6998 8.231692 TCGCATTTATTCCTGGATTTATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
3100 6999 8.352201 TCGCATTTATTCCTGGATTTATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
3101 7000 7.596248 CGCATTTATTCCTGGATTTATTTCAGG 59.404 37.037 0.00 0.00 46.91 3.86
3110 7009 6.469782 TGGATTTATTTCAGGATTTCCAGC 57.530 37.500 0.00 0.00 38.89 4.85
3111 7010 5.067674 TGGATTTATTTCAGGATTTCCAGCG 59.932 40.000 0.00 0.00 38.89 5.18
3112 7011 5.299279 GGATTTATTTCAGGATTTCCAGCGA 59.701 40.000 0.00 0.00 38.89 4.93
3113 7012 6.015940 GGATTTATTTCAGGATTTCCAGCGAT 60.016 38.462 0.00 0.00 38.89 4.58
3114 7013 5.756195 TTATTTCAGGATTTCCAGCGATG 57.244 39.130 0.00 0.00 38.89 3.84
3115 7014 1.382522 TTCAGGATTTCCAGCGATGC 58.617 50.000 0.00 0.00 38.89 3.91
3116 7015 0.811219 TCAGGATTTCCAGCGATGCG 60.811 55.000 0.00 0.00 38.89 4.73
3127 7026 4.620437 CGATGCGCATTCAATGGG 57.380 55.556 26.12 10.08 45.06 4.00
3128 7027 2.024117 CGATGCGCATTCAATGGGA 58.976 52.632 26.12 4.11 45.09 4.37
3129 7028 0.040692 CGATGCGCATTCAATGGGAG 60.041 55.000 26.12 4.12 45.09 4.30
3130 7029 0.318445 GATGCGCATTCAATGGGAGC 60.318 55.000 26.12 3.25 45.09 4.70
3131 7030 1.038681 ATGCGCATTCAATGGGAGCA 61.039 50.000 19.28 7.80 45.09 4.26
3132 7031 1.065273 GCGCATTCAATGGGAGCAG 59.935 57.895 18.25 0.00 45.09 4.24
3133 7032 1.378882 GCGCATTCAATGGGAGCAGA 61.379 55.000 18.25 0.00 45.09 4.26
3134 7033 0.379669 CGCATTCAATGGGAGCAGAC 59.620 55.000 8.78 0.00 45.09 3.51
3135 7034 0.379669 GCATTCAATGGGAGCAGACG 59.620 55.000 0.00 0.00 0.00 4.18
3136 7035 1.742761 CATTCAATGGGAGCAGACGT 58.257 50.000 0.00 0.00 0.00 4.34
3137 7036 2.086869 CATTCAATGGGAGCAGACGTT 58.913 47.619 0.00 0.00 0.00 3.99
3138 7037 1.808411 TTCAATGGGAGCAGACGTTC 58.192 50.000 0.00 0.00 0.00 3.95
3139 7038 0.036388 TCAATGGGAGCAGACGTTCC 60.036 55.000 0.00 0.00 41.64 3.62
3159 7058 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
3160 7059 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
3161 7060 3.747514 CGACGACGAGACGCCTACG 62.748 68.421 0.00 0.00 43.40 3.51
3162 7061 3.431683 GACGACGAGACGCCTACGG 62.432 68.421 0.00 0.00 46.04 4.02
3163 7062 3.494336 CGACGAGACGCCTACGGT 61.494 66.667 0.00 0.00 46.04 4.83
3164 7063 2.099831 GACGAGACGCCTACGGTG 59.900 66.667 0.00 0.00 46.04 4.94
3165 7064 2.359107 ACGAGACGCCTACGGTGA 60.359 61.111 0.00 0.00 46.04 4.02
3166 7065 2.099831 CGAGACGCCTACGGTGAC 59.900 66.667 0.00 0.00 46.04 3.67
3167 7066 2.396955 CGAGACGCCTACGGTGACT 61.397 63.158 0.00 0.00 46.04 3.41
3168 7067 1.881602 GAGACGCCTACGGTGACTT 59.118 57.895 0.00 0.00 46.04 3.01
3169 7068 0.179169 GAGACGCCTACGGTGACTTC 60.179 60.000 0.00 0.00 46.04 3.01
3170 7069 1.513586 GACGCCTACGGTGACTTCG 60.514 63.158 0.00 0.00 46.04 3.79
3171 7070 2.192608 GACGCCTACGGTGACTTCGT 62.193 60.000 0.00 0.00 46.04 3.85
3172 7071 0.955428 ACGCCTACGGTGACTTCGTA 60.955 55.000 0.00 0.00 46.04 3.43
3173 7072 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
3174 7073 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
3175 7074 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
3176 7075 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
3177 7076 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
3178 7077 4.741342 CCTACGGTGACTTCGTAAATCTT 58.259 43.478 0.00 0.00 41.62 2.40
3179 7078 5.166398 CCTACGGTGACTTCGTAAATCTTT 58.834 41.667 0.00 0.00 41.62 2.52
3180 7079 6.324819 CCTACGGTGACTTCGTAAATCTTTA 58.675 40.000 0.00 0.00 41.62 1.85
3181 7080 6.471519 CCTACGGTGACTTCGTAAATCTTTAG 59.528 42.308 0.00 0.00 41.62 1.85
3182 7081 6.017400 ACGGTGACTTCGTAAATCTTTAGA 57.983 37.500 0.00 0.00 39.22 2.10
3183 7082 6.628185 ACGGTGACTTCGTAAATCTTTAGAT 58.372 36.000 0.00 0.00 39.22 1.98
3184 7083 6.530534 ACGGTGACTTCGTAAATCTTTAGATG 59.469 38.462 0.00 0.00 39.22 2.90
3185 7084 6.750501 CGGTGACTTCGTAAATCTTTAGATGA 59.249 38.462 0.00 0.00 34.49 2.92
3186 7085 7.435488 CGGTGACTTCGTAAATCTTTAGATGAT 59.565 37.037 0.00 0.00 34.49 2.45
3187 7086 9.745880 GGTGACTTCGTAAATCTTTAGATGATA 57.254 33.333 0.00 0.00 34.49 2.15
3191 7090 9.209175 ACTTCGTAAATCTTTAGATGATATGCC 57.791 33.333 0.00 0.00 34.49 4.40
3192 7091 7.812309 TCGTAAATCTTTAGATGATATGCCG 57.188 36.000 0.00 0.00 34.49 5.69
3193 7092 6.811665 TCGTAAATCTTTAGATGATATGCCGG 59.188 38.462 0.00 0.00 34.49 6.13
3194 7093 5.886960 AAATCTTTAGATGATATGCCGGC 57.113 39.130 22.73 22.73 34.49 6.13
3195 7094 4.833478 ATCTTTAGATGATATGCCGGCT 57.167 40.909 29.70 15.76 32.68 5.52
3196 7095 4.193826 TCTTTAGATGATATGCCGGCTC 57.806 45.455 29.70 17.89 0.00 4.70
3197 7096 3.578282 TCTTTAGATGATATGCCGGCTCA 59.422 43.478 29.70 23.34 0.00 4.26
3198 7097 3.599730 TTAGATGATATGCCGGCTCAG 57.400 47.619 29.70 0.00 0.00 3.35
3199 7098 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3200 7099 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3201 7100 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3202 7101 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
3203 7102 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
3204 7103 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
3205 7104 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
3206 7105 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
3207 7106 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
3208 7107 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
3209 7108 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
3210 7109 4.193653 GCTCAGTCTTTCGGAGGC 57.806 61.111 0.00 0.00 38.48 4.70
3211 7110 1.807573 GCTCAGTCTTTCGGAGGCG 60.808 63.158 0.00 0.00 38.48 5.52
3212 7111 1.807573 CTCAGTCTTTCGGAGGCGC 60.808 63.158 0.00 0.00 35.32 6.53
3213 7112 2.219325 CTCAGTCTTTCGGAGGCGCT 62.219 60.000 7.64 0.00 35.32 5.92
3214 7113 1.807573 CAGTCTTTCGGAGGCGCTC 60.808 63.158 7.64 2.45 34.31 5.03
3215 7114 2.261671 GTCTTTCGGAGGCGCTCA 59.738 61.111 7.64 0.00 31.08 4.26
3216 7115 1.153549 GTCTTTCGGAGGCGCTCAT 60.154 57.895 7.64 0.00 31.08 2.90
3217 7116 0.102481 GTCTTTCGGAGGCGCTCATA 59.898 55.000 7.64 0.00 31.08 2.15
3218 7117 0.385751 TCTTTCGGAGGCGCTCATAG 59.614 55.000 7.64 0.00 31.08 2.23
3219 7118 0.598680 CTTTCGGAGGCGCTCATAGG 60.599 60.000 7.64 0.00 31.08 2.57
3220 7119 2.644555 TTTCGGAGGCGCTCATAGGC 62.645 60.000 7.64 0.00 31.08 3.93
3229 7128 2.734893 GCTCATAGGCGTAGGGTCT 58.265 57.895 0.00 0.00 0.00 3.85
3230 7129 0.315568 GCTCATAGGCGTAGGGTCTG 59.684 60.000 0.00 0.00 0.00 3.51
3231 7130 0.315568 CTCATAGGCGTAGGGTCTGC 59.684 60.000 0.00 0.00 0.00 4.26
3232 7131 1.007271 CATAGGCGTAGGGTCTGCG 60.007 63.158 1.25 1.25 42.13 5.18
3233 7132 1.455217 ATAGGCGTAGGGTCTGCGT 60.455 57.895 7.19 0.00 41.34 5.24
3234 7133 1.735376 ATAGGCGTAGGGTCTGCGTG 61.735 60.000 7.19 0.00 41.34 5.34
3235 7134 4.065281 GGCGTAGGGTCTGCGTGT 62.065 66.667 7.19 0.00 41.34 4.49
3236 7135 2.809601 GCGTAGGGTCTGCGTGTG 60.810 66.667 7.19 0.00 41.34 3.82
3237 7136 2.649034 CGTAGGGTCTGCGTGTGT 59.351 61.111 0.00 0.00 35.06 3.72
3238 7137 1.733041 CGTAGGGTCTGCGTGTGTG 60.733 63.158 0.00 0.00 35.06 3.82
3239 7138 1.366366 GTAGGGTCTGCGTGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
3240 7139 0.944311 GTAGGGTCTGCGTGTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
3241 7140 1.396607 TAGGGTCTGCGTGTGTGTGT 61.397 55.000 0.00 0.00 0.00 3.72
3242 7141 1.817941 GGGTCTGCGTGTGTGTGTT 60.818 57.895 0.00 0.00 0.00 3.32
3243 7142 1.641677 GGTCTGCGTGTGTGTGTTC 59.358 57.895 0.00 0.00 0.00 3.18
3244 7143 1.087202 GGTCTGCGTGTGTGTGTTCA 61.087 55.000 0.00 0.00 0.00 3.18
3245 7144 0.937304 GTCTGCGTGTGTGTGTTCAT 59.063 50.000 0.00 0.00 0.00 2.57
3246 7145 2.131972 GTCTGCGTGTGTGTGTTCATA 58.868 47.619 0.00 0.00 0.00 2.15
3247 7146 2.155732 GTCTGCGTGTGTGTGTTCATAG 59.844 50.000 0.00 0.00 0.00 2.23
3248 7147 1.460743 CTGCGTGTGTGTGTTCATAGG 59.539 52.381 0.00 0.00 0.00 2.57
3249 7148 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
3250 7149 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
3251 7150 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
3252 7151 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
3253 7152 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
3254 7153 2.038426 TGTGTGTGTTCATAGGGGTGAG 59.962 50.000 0.00 0.00 0.00 3.51
3255 7154 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
3256 7155 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
3257 7156 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
3258 7157 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
3259 7158 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
3260 7159 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
3261 7160 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
3262 7161 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
3263 7162 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
3264 7163 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
3265 7164 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3266 7165 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3267 7166 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3268 7167 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3269 7168 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3270 7169 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3271 7170 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
3272 7171 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
3273 7172 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
3274 7173 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
3275 7174 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
3278 7177 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
3279 7178 1.769212 CGCGTGTATATGAGCGCTG 59.231 57.895 18.48 0.00 46.56 5.18
3280 7179 0.934901 CGCGTGTATATGAGCGCTGT 60.935 55.000 18.48 5.76 46.56 4.40
3281 7180 0.504384 GCGTGTATATGAGCGCTGTG 59.496 55.000 18.48 0.00 45.48 3.66
3282 7181 1.840181 CGTGTATATGAGCGCTGTGT 58.160 50.000 18.48 3.97 0.00 3.72
3283 7182 1.781429 CGTGTATATGAGCGCTGTGTC 59.219 52.381 18.48 0.00 0.00 3.67
3284 7183 2.541794 CGTGTATATGAGCGCTGTGTCT 60.542 50.000 18.48 0.00 0.00 3.41
3285 7184 2.791560 GTGTATATGAGCGCTGTGTCTG 59.208 50.000 18.48 0.00 0.00 3.51
3286 7185 2.427095 TGTATATGAGCGCTGTGTCTGT 59.573 45.455 18.48 0.00 0.00 3.41
3287 7186 3.630312 TGTATATGAGCGCTGTGTCTGTA 59.370 43.478 18.48 0.00 0.00 2.74
3288 7187 2.561733 TATGAGCGCTGTGTCTGTAC 57.438 50.000 18.48 0.00 0.00 2.90
3289 7188 0.891373 ATGAGCGCTGTGTCTGTACT 59.109 50.000 18.48 0.00 0.00 2.73
3290 7189 0.039165 TGAGCGCTGTGTCTGTACTG 60.039 55.000 18.48 0.00 0.00 2.74
3291 7190 0.241213 GAGCGCTGTGTCTGTACTGA 59.759 55.000 18.48 0.00 0.00 3.41
3292 7191 0.891373 AGCGCTGTGTCTGTACTGAT 59.109 50.000 10.39 0.00 0.00 2.90
3293 7192 2.092323 AGCGCTGTGTCTGTACTGATA 58.908 47.619 10.39 0.15 0.00 2.15
3294 7193 2.690497 AGCGCTGTGTCTGTACTGATAT 59.310 45.455 10.39 0.00 0.00 1.63
3295 7194 3.131223 AGCGCTGTGTCTGTACTGATATT 59.869 43.478 10.39 0.00 0.00 1.28
3296 7195 3.487574 GCGCTGTGTCTGTACTGATATTC 59.512 47.826 0.00 0.00 0.00 1.75
3297 7196 4.672409 CGCTGTGTCTGTACTGATATTCA 58.328 43.478 5.69 0.00 0.00 2.57
3298 7197 5.102313 CGCTGTGTCTGTACTGATATTCAA 58.898 41.667 5.69 0.00 0.00 2.69
3299 7198 5.576774 CGCTGTGTCTGTACTGATATTCAAA 59.423 40.000 5.69 0.00 0.00 2.69
3300 7199 6.090763 CGCTGTGTCTGTACTGATATTCAAAA 59.909 38.462 5.69 0.00 0.00 2.44
3301 7200 7.360017 CGCTGTGTCTGTACTGATATTCAAAAA 60.360 37.037 5.69 0.00 0.00 1.94
3364 7266 2.799126 AGGACAATCCCATTACGCAA 57.201 45.000 0.00 0.00 37.19 4.85
3504 7408 1.890979 CATTGCTCAGGCGCTAGGG 60.891 63.158 7.64 1.65 42.25 3.53
3539 7443 5.074515 AGGTTCATGTTCTTTTAGGGAAGGA 59.925 40.000 0.00 0.00 0.00 3.36
3547 7451 6.183361 TGTTCTTTTAGGGAAGGACATTCTGA 60.183 38.462 0.00 0.00 39.60 3.27
3584 7488 2.029470 CGGCCCAACTGCAAGAATTTTA 60.029 45.455 0.00 0.00 37.43 1.52
3633 7544 3.583276 ATCCGCGCCAAACTCGACA 62.583 57.895 0.00 0.00 0.00 4.35
3636 7547 1.206578 CGCGCCAAACTCGACATTT 59.793 52.632 0.00 0.00 0.00 2.32
3638 7549 0.237235 GCGCCAAACTCGACATTTCA 59.763 50.000 0.00 0.00 0.00 2.69
3652 7563 2.846206 ACATTTCAGATCCCAGTAGCCA 59.154 45.455 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.119226 GCAGCAAACATAACTGAAAGAGTATAG 58.881 37.037 0.00 0.00 37.43 1.31
78 80 2.675032 GCAATGAGACGAGATGGACACA 60.675 50.000 0.00 0.00 0.00 3.72
445 607 2.740055 CACTGCTGTCCCTCGTGC 60.740 66.667 0.00 0.00 0.00 5.34
481 643 2.358737 GACTGTCCACCTTGGCCG 60.359 66.667 0.00 0.00 37.47 6.13
496 658 5.685520 ATCTTTACCTTCTTCTCCAGGAC 57.314 43.478 0.00 0.00 33.90 3.85
508 670 5.507315 CCACGTTTTGCTCAATCTTTACCTT 60.507 40.000 0.00 0.00 0.00 3.50
509 671 4.023193 CCACGTTTTGCTCAATCTTTACCT 60.023 41.667 0.00 0.00 0.00 3.08
592 754 5.652744 TTACAAAGTTCGACAGAAAGCTC 57.347 39.130 0.00 0.00 38.23 4.09
620 782 0.957888 GGACTTCAACCAGAGCCTGC 60.958 60.000 0.00 0.00 0.00 4.85
623 785 0.329596 ATGGGACTTCAACCAGAGCC 59.670 55.000 0.00 0.00 40.67 4.70
640 802 0.319383 CCGCCAGAGCAGCTACTATG 60.319 60.000 1.31 1.31 39.83 2.23
753 915 9.533831 AGAATTTTGTAGAACCTTTATCATGGT 57.466 29.630 0.00 0.00 38.35 3.55
778 940 7.278424 ACAGTTTTGACCATCAAACATTTTCAG 59.722 33.333 3.51 0.00 45.03 3.02
785 947 4.180057 GCAACAGTTTTGACCATCAAACA 58.820 39.130 3.51 0.00 45.03 2.83
786 948 4.180057 TGCAACAGTTTTGACCATCAAAC 58.820 39.130 3.51 0.91 45.03 2.93
794 956 1.203065 GCTGCTGCAACAGTTTTGAC 58.797 50.000 17.94 0.00 39.96 3.18
829 1009 0.310543 GATTGACCGTTGTTGCTGCA 59.689 50.000 0.00 0.00 0.00 4.41
830 1010 0.387239 GGATTGACCGTTGTTGCTGC 60.387 55.000 0.00 0.00 0.00 5.25
831 1011 1.238439 AGGATTGACCGTTGTTGCTG 58.762 50.000 0.00 0.00 44.74 4.41
832 1012 1.981256 AAGGATTGACCGTTGTTGCT 58.019 45.000 0.00 0.00 44.74 3.91
845 1025 1.544691 ACGCGAGACACTACAAGGATT 59.455 47.619 15.93 0.00 0.00 3.01
847 1027 0.520404 GACGCGAGACACTACAAGGA 59.480 55.000 15.93 0.00 0.00 3.36
873 1053 2.359602 CCAGCACCACTCCTGCAG 60.360 66.667 6.78 6.78 37.08 4.41
879 1059 2.998279 GCAATGGCCAGCACCACTC 61.998 63.158 13.05 0.00 44.17 3.51
881 1061 3.291101 CTGCAATGGCCAGCACCAC 62.291 63.158 15.27 0.06 44.17 4.16
884 1064 2.677524 TCCTGCAATGGCCAGCAC 60.678 61.111 15.27 5.18 40.13 4.40
886 1066 2.362120 ACTCCTGCAATGGCCAGC 60.362 61.111 13.05 11.31 40.13 4.85
887 1067 2.050350 CCACTCCTGCAATGGCCAG 61.050 63.158 13.05 0.00 40.13 4.85
888 1068 2.036098 CCACTCCTGCAATGGCCA 59.964 61.111 8.56 8.56 40.13 5.36
890 1070 2.998279 GCACCACTCCTGCAATGGC 61.998 63.158 6.00 0.00 36.96 4.40
892 1072 1.303888 AGGCACCACTCCTGCAATG 60.304 57.895 0.00 0.00 36.27 2.82
893 1073 1.001641 GAGGCACCACTCCTGCAAT 60.002 57.895 0.00 0.00 36.27 3.56
894 1074 2.431683 GAGGCACCACTCCTGCAA 59.568 61.111 0.00 0.00 36.27 4.08
900 1080 1.147153 GCTATGGGAGGCACCACTC 59.853 63.158 2.69 0.00 44.72 3.51
901 1081 0.031111 TAGCTATGGGAGGCACCACT 60.031 55.000 2.69 0.00 44.72 4.00
903 1083 1.352083 GATAGCTATGGGAGGCACCA 58.648 55.000 11.94 3.04 46.24 4.17
905 1085 3.822607 CGATAGCTATGGGAGGCAC 57.177 57.895 11.94 0.00 0.00 5.01
986 4275 1.729149 GCTTCATGGTTGCGTTGCTAC 60.729 52.381 0.00 0.00 33.89 3.58
987 4276 0.521291 GCTTCATGGTTGCGTTGCTA 59.479 50.000 0.00 0.00 0.00 3.49
1016 4305 0.033504 GAGGAGAAGGCACACAACGA 59.966 55.000 0.00 0.00 0.00 3.85
1059 4348 9.091220 GAAACAAGGAGGTAGTGGATAGTATAT 57.909 37.037 0.00 0.00 0.00 0.86
1060 4349 8.287350 AGAAACAAGGAGGTAGTGGATAGTATA 58.713 37.037 0.00 0.00 0.00 1.47
1061 4350 7.133483 AGAAACAAGGAGGTAGTGGATAGTAT 58.867 38.462 0.00 0.00 0.00 2.12
1062 4351 6.500336 AGAAACAAGGAGGTAGTGGATAGTA 58.500 40.000 0.00 0.00 0.00 1.82
1063 4352 5.342866 AGAAACAAGGAGGTAGTGGATAGT 58.657 41.667 0.00 0.00 0.00 2.12
1064 4353 5.941555 AGAAACAAGGAGGTAGTGGATAG 57.058 43.478 0.00 0.00 0.00 2.08
1065 4354 6.697641 AAAGAAACAAGGAGGTAGTGGATA 57.302 37.500 0.00 0.00 0.00 2.59
1066 4355 5.584551 AAAGAAACAAGGAGGTAGTGGAT 57.415 39.130 0.00 0.00 0.00 3.41
1067 4356 5.374071 GAAAAGAAACAAGGAGGTAGTGGA 58.626 41.667 0.00 0.00 0.00 4.02
1068 4357 4.519350 GGAAAAGAAACAAGGAGGTAGTGG 59.481 45.833 0.00 0.00 0.00 4.00
1069 4358 5.130350 TGGAAAAGAAACAAGGAGGTAGTG 58.870 41.667 0.00 0.00 0.00 2.74
1195 4504 4.436998 CGGAGGGTGTGCCTCGAC 62.437 72.222 0.00 0.00 35.35 4.20
1208 4517 1.078848 CTCCTTGGCCTTGACGGAG 60.079 63.158 3.32 8.06 35.75 4.63
1212 4521 1.003580 TGATGACTCCTTGGCCTTGAC 59.996 52.381 3.32 0.00 0.00 3.18
1213 4522 1.361204 TGATGACTCCTTGGCCTTGA 58.639 50.000 3.32 0.00 0.00 3.02
1214 4523 2.205022 TTGATGACTCCTTGGCCTTG 57.795 50.000 3.32 0.00 0.00 3.61
1215 4524 2.376518 TCTTTGATGACTCCTTGGCCTT 59.623 45.455 3.32 0.00 0.00 4.35
1216 4525 1.988107 TCTTTGATGACTCCTTGGCCT 59.012 47.619 3.32 0.00 0.00 5.19
1314 4623 1.039856 GAGAGATCAGACTGGGGCTC 58.960 60.000 1.81 7.23 0.00 4.70
1481 4790 9.825109 ACTTCCTCTGTAAAGAAATATAAGAGC 57.175 33.333 0.00 0.00 0.00 4.09
1503 4812 6.696441 TCTACCTAGCTTGCTAAGTACTTC 57.304 41.667 12.39 0.00 0.00 3.01
1504 4813 7.663043 ATTCTACCTAGCTTGCTAAGTACTT 57.337 36.000 13.68 13.68 0.00 2.24
1607 4935 1.831580 AGATCCTTGCTGCAAGTTCC 58.168 50.000 33.16 22.76 39.58 3.62
1631 4963 3.001514 GGAGGGGCTGCATTGAGA 58.998 61.111 0.50 0.00 0.00 3.27
1660 4992 3.190079 TCAACAGATTGATCTAGCGTGC 58.810 45.455 0.00 0.00 40.01 5.34
1838 5179 1.948834 CCGCTCATGTAATCATTGCCA 59.051 47.619 0.00 0.00 31.15 4.92
1892 5233 3.553511 GCTACTAGCTACTTACGTCGTCA 59.446 47.826 0.00 0.00 38.45 4.35
2004 5352 1.296727 AGTGTCGATCTGCATGCATG 58.703 50.000 22.97 22.70 0.00 4.06
2005 5353 2.034104 AAGTGTCGATCTGCATGCAT 57.966 45.000 22.97 7.28 0.00 3.96
2006 5354 2.270923 GTAAGTGTCGATCTGCATGCA 58.729 47.619 21.29 21.29 0.00 3.96
2042 5390 2.091277 CGACGTTCTTGACAATCTCTGC 59.909 50.000 0.00 0.00 0.00 4.26
2239 5587 2.544267 GTCCAGCATGTAGGCGTTATTC 59.456 50.000 0.00 0.00 39.27 1.75
2240 5588 2.561569 GTCCAGCATGTAGGCGTTATT 58.438 47.619 0.00 0.00 39.27 1.40
2241 5589 1.202651 GGTCCAGCATGTAGGCGTTAT 60.203 52.381 0.00 0.00 39.27 1.89
2242 5590 0.177141 GGTCCAGCATGTAGGCGTTA 59.823 55.000 0.00 0.00 39.27 3.18
2243 5591 1.078426 GGTCCAGCATGTAGGCGTT 60.078 57.895 0.00 0.00 39.27 4.84
2244 5592 1.961180 GAGGTCCAGCATGTAGGCGT 61.961 60.000 0.00 0.00 39.27 5.68
2245 5593 1.227380 GAGGTCCAGCATGTAGGCG 60.227 63.158 0.00 0.00 39.27 5.52
2246 5594 1.069358 GTAGAGGTCCAGCATGTAGGC 59.931 57.143 0.00 0.00 0.00 3.93
2247 5595 2.101582 GTGTAGAGGTCCAGCATGTAGG 59.898 54.545 0.00 0.00 0.00 3.18
2404 5753 4.021280 ACCTGCATGCACATGAAAATTGTA 60.021 37.500 18.46 0.00 41.20 2.41
2405 5754 3.244284 ACCTGCATGCACATGAAAATTGT 60.244 39.130 18.46 0.00 41.20 2.71
2406 5755 3.124466 CACCTGCATGCACATGAAAATTG 59.876 43.478 18.46 2.50 41.20 2.32
2407 5756 3.007074 TCACCTGCATGCACATGAAAATT 59.993 39.130 18.46 0.00 41.20 1.82
2748 6428 7.676683 AGCTTCTTCCCAAATACTCATACTA 57.323 36.000 0.00 0.00 0.00 1.82
2749 6429 6.567602 AGCTTCTTCCCAAATACTCATACT 57.432 37.500 0.00 0.00 0.00 2.12
2855 6535 5.180117 CACATGACCAACTTTCTAACAGGAG 59.820 44.000 0.00 0.00 0.00 3.69
2875 6557 4.318332 CACACTAGATTCACCACACACAT 58.682 43.478 0.00 0.00 0.00 3.21
2881 6563 2.096496 GCATGCACACTAGATTCACCAC 59.904 50.000 14.21 0.00 0.00 4.16
2951 6633 0.240145 CGCACTCGTCCAAGTAGTGA 59.760 55.000 5.91 0.00 42.59 3.41
2967 6649 2.125147 GGACATAGTGCCAGCGCA 60.125 61.111 11.47 0.00 44.78 6.09
2994 6893 1.152839 AGGTTGGTTCACGGGGTTG 60.153 57.895 0.00 0.00 0.00 3.77
2995 6894 1.152839 CAGGTTGGTTCACGGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
2996 6895 2.380285 ACAGGTTGGTTCACGGGGT 61.380 57.895 0.00 0.00 0.00 4.95
2997 6896 1.896660 CACAGGTTGGTTCACGGGG 60.897 63.158 0.00 0.00 0.00 5.73
2998 6897 1.896660 CCACAGGTTGGTTCACGGG 60.897 63.158 0.00 0.00 41.10 5.28
2999 6898 3.744559 CCACAGGTTGGTTCACGG 58.255 61.111 0.00 0.00 41.10 4.94
3009 6908 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
3010 6909 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
3011 6910 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
3012 6911 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
3013 6912 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
3014 6913 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
3015 6914 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
3016 6915 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
3017 6916 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
3018 6917 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
3019 6918 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
3020 6919 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
3021 6920 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
3022 6921 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
3023 6922 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
3024 6923 3.637694 GAGGATACCACAGTCCCTCTAAC 59.362 52.174 0.00 0.00 40.32 2.34
3025 6924 3.271225 TGAGGATACCACAGTCCCTCTAA 59.729 47.826 0.00 0.00 42.29 2.10
3026 6925 2.856864 TGAGGATACCACAGTCCCTCTA 59.143 50.000 0.00 0.00 42.29 2.43
3027 6926 1.646447 TGAGGATACCACAGTCCCTCT 59.354 52.381 0.00 0.00 42.29 3.69
3028 6927 2.035632 CTGAGGATACCACAGTCCCTC 58.964 57.143 0.00 0.00 42.21 4.30
3029 6928 1.967274 GCTGAGGATACCACAGTCCCT 60.967 57.143 14.43 0.00 41.53 4.20
3030 6929 0.466124 GCTGAGGATACCACAGTCCC 59.534 60.000 14.43 0.00 41.53 4.46
3031 6930 0.466124 GGCTGAGGATACCACAGTCC 59.534 60.000 14.43 12.31 41.53 3.85
3032 6931 0.466124 GGGCTGAGGATACCACAGTC 59.534 60.000 14.43 12.52 42.67 3.51
3033 6932 1.330655 CGGGCTGAGGATACCACAGT 61.331 60.000 14.43 0.00 41.53 3.55
3034 6933 1.443407 CGGGCTGAGGATACCACAG 59.557 63.158 10.07 10.07 42.11 3.66
3035 6934 2.731571 GCGGGCTGAGGATACCACA 61.732 63.158 0.00 0.00 37.17 4.17
3036 6935 2.109181 GCGGGCTGAGGATACCAC 59.891 66.667 0.00 0.00 37.17 4.16
3037 6936 3.161450 GGCGGGCTGAGGATACCA 61.161 66.667 0.00 0.00 37.17 3.25
3038 6937 3.161450 TGGCGGGCTGAGGATACC 61.161 66.667 0.00 0.00 37.17 2.73
3039 6938 2.423446 CTGGCGGGCTGAGGATAC 59.577 66.667 0.00 0.00 0.00 2.24
3040 6939 2.844362 CCTGGCGGGCTGAGGATA 60.844 66.667 10.02 0.00 0.00 2.59
3050 6949 1.000896 AGGATTTGAACCCTGGCGG 60.001 57.895 0.00 0.00 37.81 6.13
3051 6950 2.183409 CAGGATTTGAACCCTGGCG 58.817 57.895 0.00 0.00 44.68 5.69
3055 6954 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
3056 6955 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
3057 6956 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
3058 6957 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
3059 6958 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
3060 6959 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
3061 6960 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
3062 6961 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
3063 6962 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
3064 6963 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
3065 6964 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
3066 6965 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
3067 6966 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
3068 6967 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
3069 6968 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
3070 6969 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
3071 6970 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
3072 6971 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
3073 6972 8.352201 TGAAATAAATCCAGGAATAAATGCGAG 58.648 33.333 0.00 0.00 0.00 5.03
3074 6973 8.231692 TGAAATAAATCCAGGAATAAATGCGA 57.768 30.769 0.00 0.00 0.00 5.10
3075 6974 8.511465 CTGAAATAAATCCAGGAATAAATGCG 57.489 34.615 0.00 0.00 0.00 4.73
3085 6984 7.047460 CTGGAAATCCTGAAATAAATCCAGG 57.953 40.000 9.98 0.00 45.65 4.45
3087 6986 5.067674 CGCTGGAAATCCTGAAATAAATCCA 59.932 40.000 10.20 0.00 37.15 3.41
3088 6987 5.299279 TCGCTGGAAATCCTGAAATAAATCC 59.701 40.000 10.20 0.00 37.15 3.01
3089 6988 6.377327 TCGCTGGAAATCCTGAAATAAATC 57.623 37.500 10.20 0.00 37.15 2.17
3090 6989 6.736794 GCATCGCTGGAAATCCTGAAATAAAT 60.737 38.462 10.20 0.00 37.15 1.40
3091 6990 5.450412 GCATCGCTGGAAATCCTGAAATAAA 60.450 40.000 10.20 0.00 37.15 1.40
3092 6991 4.036734 GCATCGCTGGAAATCCTGAAATAA 59.963 41.667 10.20 0.00 37.15 1.40
3093 6992 3.565482 GCATCGCTGGAAATCCTGAAATA 59.435 43.478 10.20 0.00 37.15 1.40
3094 6993 2.360165 GCATCGCTGGAAATCCTGAAAT 59.640 45.455 10.20 0.52 37.15 2.17
3095 6994 1.745087 GCATCGCTGGAAATCCTGAAA 59.255 47.619 10.20 0.00 37.15 2.69
3096 6995 1.382522 GCATCGCTGGAAATCCTGAA 58.617 50.000 10.20 0.00 37.15 3.02
3097 6996 0.811219 CGCATCGCTGGAAATCCTGA 60.811 55.000 10.20 1.98 37.15 3.86
3098 6997 1.645455 CGCATCGCTGGAAATCCTG 59.355 57.895 0.44 1.39 37.93 3.86
3099 6998 4.131376 CGCATCGCTGGAAATCCT 57.869 55.556 0.44 0.00 36.82 3.24
3110 7009 0.040692 CTCCCATTGAATGCGCATCG 60.041 55.000 25.53 9.81 0.00 3.84
3111 7010 0.318445 GCTCCCATTGAATGCGCATC 60.318 55.000 25.53 17.12 0.00 3.91
3112 7011 1.038681 TGCTCCCATTGAATGCGCAT 61.039 50.000 19.28 19.28 0.00 4.73
3113 7012 1.659622 CTGCTCCCATTGAATGCGCA 61.660 55.000 14.96 14.96 0.00 6.09
3114 7013 1.065273 CTGCTCCCATTGAATGCGC 59.935 57.895 0.00 0.00 0.00 6.09
3115 7014 0.379669 GTCTGCTCCCATTGAATGCG 59.620 55.000 0.00 0.00 0.00 4.73
3116 7015 0.379669 CGTCTGCTCCCATTGAATGC 59.620 55.000 0.00 0.00 0.00 3.56
3117 7016 1.742761 ACGTCTGCTCCCATTGAATG 58.257 50.000 0.00 0.00 0.00 2.67
3118 7017 2.359900 GAACGTCTGCTCCCATTGAAT 58.640 47.619 0.00 0.00 0.00 2.57
3119 7018 1.610624 GGAACGTCTGCTCCCATTGAA 60.611 52.381 0.00 0.00 0.00 2.69
3120 7019 0.036388 GGAACGTCTGCTCCCATTGA 60.036 55.000 0.00 0.00 0.00 2.57
3121 7020 2.471255 GGAACGTCTGCTCCCATTG 58.529 57.895 0.00 0.00 0.00 2.82
3141 7040 2.447887 TAGGCGTCTCGTCGTCGAC 61.448 63.158 15.51 15.51 41.35 4.20
3142 7041 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
3143 7042 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
3144 7043 2.021106 CGTAGGCGTCTCGTCGTC 59.979 66.667 0.00 0.00 36.23 4.20
3145 7044 3.494336 CCGTAGGCGTCTCGTCGT 61.494 66.667 0.00 0.00 46.14 4.34
3157 7056 7.246311 TCTAAAGATTTACGAAGTCACCGTAG 58.754 38.462 0.00 0.00 43.93 3.51
3158 7057 7.144722 TCTAAAGATTTACGAAGTCACCGTA 57.855 36.000 0.00 0.00 43.93 4.02
3159 7058 6.017400 TCTAAAGATTTACGAAGTCACCGT 57.983 37.500 0.00 0.00 43.93 4.83
3160 7059 6.750501 TCATCTAAAGATTTACGAAGTCACCG 59.249 38.462 0.00 0.00 35.39 4.94
3161 7060 8.649973 ATCATCTAAAGATTTACGAAGTCACC 57.350 34.615 0.00 0.00 35.39 4.02
3165 7064 9.209175 GGCATATCATCTAAAGATTTACGAAGT 57.791 33.333 0.00 0.00 37.29 3.01
3166 7065 8.376203 CGGCATATCATCTAAAGATTTACGAAG 58.624 37.037 0.00 0.00 31.21 3.79
3167 7066 7.330946 CCGGCATATCATCTAAAGATTTACGAA 59.669 37.037 0.00 0.00 31.21 3.85
3168 7067 6.811665 CCGGCATATCATCTAAAGATTTACGA 59.188 38.462 0.00 0.00 31.21 3.43
3169 7068 6.455646 GCCGGCATATCATCTAAAGATTTACG 60.456 42.308 24.80 0.00 31.21 3.18
3170 7069 6.595716 AGCCGGCATATCATCTAAAGATTTAC 59.404 38.462 31.54 0.00 31.21 2.01
3171 7070 6.711277 AGCCGGCATATCATCTAAAGATTTA 58.289 36.000 31.54 0.00 31.21 1.40
3172 7071 5.564550 AGCCGGCATATCATCTAAAGATTT 58.435 37.500 31.54 0.00 31.21 2.17
3173 7072 5.171339 AGCCGGCATATCATCTAAAGATT 57.829 39.130 31.54 0.00 31.21 2.40
3174 7073 4.223700 TGAGCCGGCATATCATCTAAAGAT 59.776 41.667 31.54 0.06 34.56 2.40
3175 7074 3.578282 TGAGCCGGCATATCATCTAAAGA 59.422 43.478 31.54 0.00 0.00 2.52
3176 7075 3.930336 TGAGCCGGCATATCATCTAAAG 58.070 45.455 31.54 0.00 0.00 1.85
3177 7076 3.324846 ACTGAGCCGGCATATCATCTAAA 59.675 43.478 31.54 0.00 0.00 1.85
3178 7077 2.899900 ACTGAGCCGGCATATCATCTAA 59.100 45.455 31.54 0.00 0.00 2.10
3179 7078 2.493675 GACTGAGCCGGCATATCATCTA 59.506 50.000 31.54 6.18 0.00 1.98
3180 7079 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
3181 7080 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3182 7081 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
3183 7082 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
3184 7083 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
3185 7084 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
3186 7085 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
3187 7086 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
3188 7087 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
3189 7088 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
3190 7089 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
3191 7090 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
3192 7091 1.448717 GCCTCCGAAAGACTGAGCC 60.449 63.158 0.00 0.00 0.00 4.70
3193 7092 1.807573 CGCCTCCGAAAGACTGAGC 60.808 63.158 0.00 0.00 36.29 4.26
3194 7093 1.807573 GCGCCTCCGAAAGACTGAG 60.808 63.158 0.00 0.00 36.29 3.35
3195 7094 2.214181 GAGCGCCTCCGAAAGACTGA 62.214 60.000 2.29 0.00 36.29 3.41
3196 7095 1.807573 GAGCGCCTCCGAAAGACTG 60.808 63.158 2.29 0.00 36.29 3.51
3197 7096 1.608717 ATGAGCGCCTCCGAAAGACT 61.609 55.000 2.29 0.00 36.29 3.24
3198 7097 0.102481 TATGAGCGCCTCCGAAAGAC 59.898 55.000 2.29 0.00 36.29 3.01
3199 7098 0.385751 CTATGAGCGCCTCCGAAAGA 59.614 55.000 2.29 0.00 36.29 2.52
3200 7099 0.598680 CCTATGAGCGCCTCCGAAAG 60.599 60.000 2.29 0.00 36.29 2.62
3201 7100 1.441729 CCTATGAGCGCCTCCGAAA 59.558 57.895 2.29 0.00 36.29 3.46
3202 7101 3.129300 CCTATGAGCGCCTCCGAA 58.871 61.111 2.29 0.00 36.29 4.30
3203 7102 3.606662 GCCTATGAGCGCCTCCGA 61.607 66.667 2.29 0.00 36.29 4.55
3211 7110 0.315568 CAGACCCTACGCCTATGAGC 59.684 60.000 0.00 0.00 0.00 4.26
3212 7111 0.315568 GCAGACCCTACGCCTATGAG 59.684 60.000 0.00 0.00 0.00 2.90
3213 7112 1.452953 CGCAGACCCTACGCCTATGA 61.453 60.000 0.00 0.00 0.00 2.15
3214 7113 1.007271 CGCAGACCCTACGCCTATG 60.007 63.158 0.00 0.00 0.00 2.23
3215 7114 1.455217 ACGCAGACCCTACGCCTAT 60.455 57.895 0.00 0.00 0.00 2.57
3216 7115 2.044650 ACGCAGACCCTACGCCTA 60.045 61.111 0.00 0.00 0.00 3.93
3217 7116 3.760035 CACGCAGACCCTACGCCT 61.760 66.667 0.00 0.00 0.00 5.52
3218 7117 4.065281 ACACGCAGACCCTACGCC 62.065 66.667 0.00 0.00 0.00 5.68
3219 7118 2.809601 CACACGCAGACCCTACGC 60.810 66.667 0.00 0.00 0.00 4.42
3220 7119 1.733041 CACACACGCAGACCCTACG 60.733 63.158 0.00 0.00 0.00 3.51
3221 7120 0.944311 CACACACACGCAGACCCTAC 60.944 60.000 0.00 0.00 0.00 3.18
3222 7121 1.365999 CACACACACGCAGACCCTA 59.634 57.895 0.00 0.00 0.00 3.53
3223 7122 2.108976 CACACACACGCAGACCCT 59.891 61.111 0.00 0.00 0.00 4.34
3224 7123 1.772063 GAACACACACACGCAGACCC 61.772 60.000 0.00 0.00 0.00 4.46
3225 7124 1.087202 TGAACACACACACGCAGACC 61.087 55.000 0.00 0.00 0.00 3.85
3226 7125 0.937304 ATGAACACACACACGCAGAC 59.063 50.000 0.00 0.00 0.00 3.51
3227 7126 2.403259 CTATGAACACACACACGCAGA 58.597 47.619 0.00 0.00 0.00 4.26
3228 7127 1.460743 CCTATGAACACACACACGCAG 59.539 52.381 0.00 0.00 0.00 5.18
3229 7128 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
3230 7129 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
3231 7130 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
3232 7131 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
3233 7132 2.038426 CTCACCCCTATGAACACACACA 59.962 50.000 0.00 0.00 0.00 3.72
3234 7133 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
3235 7134 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
3236 7135 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
3237 7136 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
3238 7137 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
3239 7138 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
3240 7139 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
3241 7140 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
3242 7141 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
3243 7142 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
3244 7143 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
3245 7144 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
3246 7145 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
3247 7146 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
3248 7147 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3249 7148 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3250 7149 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3251 7150 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
3252 7151 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
3253 7152 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
3254 7153 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
3255 7154 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
3256 7155 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
3257 7156 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
3258 7157 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
3259 7158 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
3263 7162 1.781429 GACACAGCGCTCATATACACG 59.219 52.381 7.13 0.00 0.00 4.49
3264 7163 2.791560 CAGACACAGCGCTCATATACAC 59.208 50.000 7.13 0.00 0.00 2.90
3265 7164 2.427095 ACAGACACAGCGCTCATATACA 59.573 45.455 7.13 0.00 0.00 2.29
3266 7165 3.085443 ACAGACACAGCGCTCATATAC 57.915 47.619 7.13 0.00 0.00 1.47
3267 7166 3.883489 AGTACAGACACAGCGCTCATATA 59.117 43.478 7.13 0.00 0.00 0.86
3268 7167 2.690497 AGTACAGACACAGCGCTCATAT 59.310 45.455 7.13 0.00 0.00 1.78
3269 7168 2.092323 AGTACAGACACAGCGCTCATA 58.908 47.619 7.13 0.00 0.00 2.15
3270 7169 0.891373 AGTACAGACACAGCGCTCAT 59.109 50.000 7.13 0.00 0.00 2.90
3271 7170 0.039165 CAGTACAGACACAGCGCTCA 60.039 55.000 7.13 0.00 0.00 4.26
3272 7171 0.241213 TCAGTACAGACACAGCGCTC 59.759 55.000 7.13 0.00 0.00 5.03
3273 7172 0.891373 ATCAGTACAGACACAGCGCT 59.109 50.000 2.64 2.64 0.00 5.92
3274 7173 2.561733 TATCAGTACAGACACAGCGC 57.438 50.000 0.00 0.00 0.00 5.92
3275 7174 4.672409 TGAATATCAGTACAGACACAGCG 58.328 43.478 0.00 0.00 0.00 5.18
3276 7175 6.968131 TTTGAATATCAGTACAGACACAGC 57.032 37.500 0.00 0.00 0.00 4.40
3302 7201 2.817844 GTCTCGGGGTTGCTATGTTTTT 59.182 45.455 0.00 0.00 0.00 1.94
3303 7202 2.039879 AGTCTCGGGGTTGCTATGTTTT 59.960 45.455 0.00 0.00 0.00 2.43
3304 7203 1.628846 AGTCTCGGGGTTGCTATGTTT 59.371 47.619 0.00 0.00 0.00 2.83
3305 7204 1.276622 AGTCTCGGGGTTGCTATGTT 58.723 50.000 0.00 0.00 0.00 2.71
3306 7205 2.032620 CTAGTCTCGGGGTTGCTATGT 58.967 52.381 0.00 0.00 0.00 2.29
3307 7206 2.307768 TCTAGTCTCGGGGTTGCTATG 58.692 52.381 0.00 0.00 0.00 2.23
3308 7207 2.750141 TCTAGTCTCGGGGTTGCTAT 57.250 50.000 0.00 0.00 0.00 2.97
3309 7208 2.307768 CATCTAGTCTCGGGGTTGCTA 58.692 52.381 0.00 0.00 0.00 3.49
3318 7217 0.319728 CCATGGGCCATCTAGTCTCG 59.680 60.000 18.16 2.31 0.00 4.04
3364 7266 0.261696 ATATCCGGCCCCTTTTGCTT 59.738 50.000 0.00 0.00 0.00 3.91
3504 7408 7.881775 AAGAACATGAACCTAATCCCATAAC 57.118 36.000 0.00 0.00 0.00 1.89
3539 7443 4.164221 ACGAACCCCATAATCTCAGAATGT 59.836 41.667 0.00 0.00 37.40 2.71
3547 7451 0.106149 GCCGACGAACCCCATAATCT 59.894 55.000 0.00 0.00 0.00 2.40
3584 7488 9.803507 AGTTACCTAACCTTTTGTTTAGCTAAT 57.196 29.630 7.08 0.00 38.42 1.73
3633 7544 3.461085 ACATGGCTACTGGGATCTGAAAT 59.539 43.478 0.00 0.00 0.00 2.17
3636 7547 2.042464 GACATGGCTACTGGGATCTGA 58.958 52.381 0.00 0.00 0.00 3.27
3638 7549 2.180946 TGACATGGCTACTGGGATCT 57.819 50.000 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.