Multiple sequence alignment - TraesCS7A01G535000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G535000 chr7A 100.000 2171 0 0 1 2171 712973279 712971109 0.000000e+00 4010.0
1 TraesCS7A01G535000 chr7A 100.000 654 0 0 2505 3158 712970775 712970122 0.000000e+00 1208.0
2 TraesCS7A01G535000 chr7A 97.368 38 1 0 728 765 713131587 713131550 7.310000e-07 65.8
3 TraesCS7A01G535000 chr2A 95.702 1303 53 1 869 2171 41055670 41054371 0.000000e+00 2093.0
4 TraesCS7A01G535000 chr2A 96.714 426 14 0 2505 2930 41054309 41053884 0.000000e+00 710.0
5 TraesCS7A01G535000 chr2A 92.157 408 29 2 1 408 109601388 109600984 9.830000e-160 573.0
6 TraesCS7A01G535000 chr2A 94.872 234 11 1 2925 3158 41036545 41036313 6.440000e-97 364.0
7 TraesCS7A01G535000 chr2A 94.118 153 8 1 441 592 31408532 31408684 6.810000e-57 231.0
8 TraesCS7A01G535000 chr6A 93.032 1349 93 1 823 2171 570011368 570010021 0.000000e+00 1969.0
9 TraesCS7A01G535000 chr6A 93.884 654 40 0 2505 3158 570009959 570009306 0.000000e+00 987.0
10 TraesCS7A01G535000 chr6A 90.663 407 34 2 1 405 23360266 23360670 3.580000e-149 538.0
11 TraesCS7A01G535000 chr6B 90.822 1351 122 2 821 2171 583464838 583463490 0.000000e+00 1807.0
12 TraesCS7A01G535000 chr6B 92.308 650 48 1 2509 3158 583461683 583461036 0.000000e+00 922.0
13 TraesCS7A01G535000 chr6B 95.037 403 19 1 1 402 554026068 554026470 1.600000e-177 632.0
14 TraesCS7A01G535000 chr6B 91.304 184 7 4 418 592 382038553 382038736 3.150000e-60 243.0
15 TraesCS7A01G535000 chr6B 87.895 190 12 6 412 591 457435102 457435290 2.470000e-51 213.0
16 TraesCS7A01G535000 chr4A 89.785 979 99 1 1193 2171 665825127 665826104 0.000000e+00 1253.0
17 TraesCS7A01G535000 chr4A 91.616 656 50 4 2505 3158 665826166 665826818 0.000000e+00 902.0
18 TraesCS7A01G535000 chr1A 81.357 1341 230 16 839 2171 536625093 536623765 0.000000e+00 1074.0
19 TraesCS7A01G535000 chr1A 78.624 1352 277 10 822 2171 15531253 15529912 0.000000e+00 885.0
20 TraesCS7A01G535000 chr1A 85.501 469 66 2 2505 2972 536623704 536623237 3.660000e-134 488.0
21 TraesCS7A01G535000 chrUn 82.713 1128 186 7 1047 2171 304251385 304250264 0.000000e+00 994.0
22 TraesCS7A01G535000 chrUn 82.447 1128 189 7 1047 2171 386708637 386709758 0.000000e+00 977.0
23 TraesCS7A01G535000 chrUn 82.358 1128 190 7 1047 2171 348534346 348535467 0.000000e+00 972.0
24 TraesCS7A01G535000 chr3B 78.830 1351 272 12 824 2171 828534377 828533038 0.000000e+00 898.0
25 TraesCS7A01G535000 chr3B 93.464 153 8 2 441 592 771313845 771313694 3.170000e-55 226.0
26 TraesCS7A01G535000 chr2B 78.360 1354 274 17 823 2171 784979376 784980715 0.000000e+00 859.0
27 TraesCS7A01G535000 chr2B 92.810 153 8 2 441 592 621670962 621670812 5.300000e-53 219.0
28 TraesCS7A01G535000 chr5A 93.170 571 37 2 2590 3158 609284650 609284080 0.000000e+00 837.0
29 TraesCS7A01G535000 chr2D 87.619 630 76 2 2530 3158 41222416 41223044 0.000000e+00 730.0
30 TraesCS7A01G535000 chr2D 84.663 652 100 0 2507 3158 38569756 38569105 0.000000e+00 651.0
31 TraesCS7A01G535000 chr2D 93.464 153 9 1 441 592 555104261 555104413 3.170000e-55 226.0
32 TraesCS7A01G535000 chr7D 94.568 405 21 1 1 405 602284684 602285087 2.670000e-175 625.0
33 TraesCS7A01G535000 chr7D 94.132 409 21 3 1 408 48275749 48275343 1.240000e-173 619.0
34 TraesCS7A01G535000 chr7D 94.321 405 22 1 1 405 602280413 602280816 1.240000e-173 619.0
35 TraesCS7A01G535000 chr7D 90.749 227 11 5 593 816 619151055 619150836 8.570000e-76 294.0
36 TraesCS7A01G535000 chr1D 94.321 405 22 1 1 405 438585714 438585311 1.240000e-173 619.0
37 TraesCS7A01G535000 chr7B 83.538 650 107 0 2506 3155 312388983 312388334 2.690000e-170 608.0
38 TraesCS7A01G535000 chr7B 91.875 160 12 1 590 748 714469958 714469799 4.100000e-54 222.0
39 TraesCS7A01G535000 chr7B 85.246 122 10 6 697 818 714455497 714455384 5.530000e-23 119.0
40 TraesCS7A01G535000 chr7B 87.736 106 6 2 713 818 714319817 714319719 1.990000e-22 117.0
41 TraesCS7A01G535000 chr7B 100.000 38 0 0 728 765 714602644 714602607 1.570000e-08 71.3
42 TraesCS7A01G535000 chr4D 93.612 407 23 2 1 405 468416435 468416030 3.480000e-169 604.0
43 TraesCS7A01G535000 chr3A 90.571 403 34 2 5 405 28076816 28077216 6.000000e-147 531.0
44 TraesCS7A01G535000 chr1B 96.104 154 5 1 441 593 478598297 478598144 1.880000e-62 250.0
45 TraesCS7A01G535000 chr1B 88.725 204 10 7 408 599 284013039 284013241 1.460000e-58 237.0
46 TraesCS7A01G535000 chr3D 92.157 153 11 1 441 592 66177466 66177314 6.860000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G535000 chr7A 712970122 712973279 3157 True 2609.0 4010 100.0000 1 3158 2 chr7A.!!$R2 3157
1 TraesCS7A01G535000 chr2A 41053884 41055670 1786 True 1401.5 2093 96.2080 869 2930 2 chr2A.!!$R3 2061
2 TraesCS7A01G535000 chr6A 570009306 570011368 2062 True 1478.0 1969 93.4580 823 3158 2 chr6A.!!$R1 2335
3 TraesCS7A01G535000 chr6B 583461036 583464838 3802 True 1364.5 1807 91.5650 821 3158 2 chr6B.!!$R1 2337
4 TraesCS7A01G535000 chr4A 665825127 665826818 1691 False 1077.5 1253 90.7005 1193 3158 2 chr4A.!!$F1 1965
5 TraesCS7A01G535000 chr1A 15529912 15531253 1341 True 885.0 885 78.6240 822 2171 1 chr1A.!!$R1 1349
6 TraesCS7A01G535000 chr1A 536623237 536625093 1856 True 781.0 1074 83.4290 839 2972 2 chr1A.!!$R2 2133
7 TraesCS7A01G535000 chrUn 304250264 304251385 1121 True 994.0 994 82.7130 1047 2171 1 chrUn.!!$R1 1124
8 TraesCS7A01G535000 chrUn 386708637 386709758 1121 False 977.0 977 82.4470 1047 2171 1 chrUn.!!$F2 1124
9 TraesCS7A01G535000 chrUn 348534346 348535467 1121 False 972.0 972 82.3580 1047 2171 1 chrUn.!!$F1 1124
10 TraesCS7A01G535000 chr3B 828533038 828534377 1339 True 898.0 898 78.8300 824 2171 1 chr3B.!!$R2 1347
11 TraesCS7A01G535000 chr2B 784979376 784980715 1339 False 859.0 859 78.3600 823 2171 1 chr2B.!!$F1 1348
12 TraesCS7A01G535000 chr5A 609284080 609284650 570 True 837.0 837 93.1700 2590 3158 1 chr5A.!!$R1 568
13 TraesCS7A01G535000 chr2D 41222416 41223044 628 False 730.0 730 87.6190 2530 3158 1 chr2D.!!$F1 628
14 TraesCS7A01G535000 chr2D 38569105 38569756 651 True 651.0 651 84.6630 2507 3158 1 chr2D.!!$R1 651
15 TraesCS7A01G535000 chr7D 602280413 602285087 4674 False 622.0 625 94.4445 1 405 2 chr7D.!!$F1 404
16 TraesCS7A01G535000 chr7B 312388334 312388983 649 True 608.0 608 83.5380 2506 3155 1 chr7B.!!$R1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 5047 0.030369 GGTCGTCAGTCGTCACAACT 59.970 55.0 0.0 0.0 40.80 3.16 F
821 5092 0.449388 GAATTGAGCAACTCTGGCGG 59.551 55.0 0.0 0.0 36.08 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 6164 0.748729 ACGGCCAGTTTTTGACGGAA 60.749 50.0 2.24 0.0 33.28 4.30 R
2574 8587 2.042433 CCCCCACAAAACCCTTCATCTA 59.958 50.0 0.00 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.669125 TCATATGAAATTAAGCAATGGGGG 57.331 37.500 1.98 0.00 0.00 5.40
60 4331 5.220796 GGGGAACGTGATAAAAATGACTAGC 60.221 44.000 0.00 0.00 0.00 3.42
105 4376 5.126396 GCTTTTTGCTTCCACTGTAAGAT 57.874 39.130 0.00 0.00 36.50 2.40
143 4414 7.773690 GCATTAGTAGGAGTTTATTCCAAAGGA 59.226 37.037 0.00 0.00 39.84 3.36
205 4476 4.471904 ACCATTAGCACGAATCAGAGAA 57.528 40.909 0.00 0.00 0.00 2.87
207 4478 3.557595 CCATTAGCACGAATCAGAGAACC 59.442 47.826 0.00 0.00 0.00 3.62
239 4510 8.281531 ACATGATGGATTAGGACATTTTTAGGA 58.718 33.333 0.00 0.00 0.00 2.94
378 4649 2.104859 GTTTTAGTCTCGCCCCGGC 61.105 63.158 0.00 0.00 37.85 6.13
409 4680 2.041265 AGGACCGGCCCTGAATCT 59.959 61.111 9.27 0.00 37.37 2.40
410 4681 2.190578 GGACCGGCCCTGAATCTG 59.809 66.667 0.00 0.00 0.00 2.90
411 4682 2.367202 GGACCGGCCCTGAATCTGA 61.367 63.158 0.00 0.00 0.00 3.27
412 4683 1.144936 GACCGGCCCTGAATCTGAG 59.855 63.158 0.00 0.00 0.00 3.35
413 4684 2.203126 CCGGCCCTGAATCTGAGC 60.203 66.667 0.00 0.00 0.00 4.26
414 4685 2.739996 CCGGCCCTGAATCTGAGCT 61.740 63.158 0.00 0.00 0.00 4.09
415 4686 1.402896 CCGGCCCTGAATCTGAGCTA 61.403 60.000 0.00 0.00 0.00 3.32
416 4687 0.033228 CGGCCCTGAATCTGAGCTAG 59.967 60.000 0.00 0.00 0.00 3.42
417 4688 1.127343 GGCCCTGAATCTGAGCTAGT 58.873 55.000 0.00 0.00 0.00 2.57
418 4689 1.202627 GGCCCTGAATCTGAGCTAGTG 60.203 57.143 0.00 0.00 0.00 2.74
419 4690 1.202627 GCCCTGAATCTGAGCTAGTGG 60.203 57.143 0.00 0.00 0.00 4.00
420 4691 1.202627 CCCTGAATCTGAGCTAGTGGC 60.203 57.143 0.00 0.00 42.19 5.01
439 4710 4.273257 GAGCTAGCTCCCCGCGAC 62.273 72.222 30.89 6.76 45.59 5.19
442 4713 3.905678 CTAGCTCCCCGCGACCTG 61.906 72.222 8.23 0.00 45.59 4.00
469 4740 2.996631 CTGCTCCAGCCATTCTTTACT 58.003 47.619 0.00 0.00 41.18 2.24
470 4741 4.142609 CTGCTCCAGCCATTCTTTACTA 57.857 45.455 0.00 0.00 41.18 1.82
471 4742 4.517285 CTGCTCCAGCCATTCTTTACTAA 58.483 43.478 0.00 0.00 41.18 2.24
472 4743 4.917385 TGCTCCAGCCATTCTTTACTAAA 58.083 39.130 0.00 0.00 41.18 1.85
473 4744 4.700213 TGCTCCAGCCATTCTTTACTAAAC 59.300 41.667 0.00 0.00 41.18 2.01
474 4745 4.700213 GCTCCAGCCATTCTTTACTAAACA 59.300 41.667 0.00 0.00 34.31 2.83
475 4746 5.163713 GCTCCAGCCATTCTTTACTAAACAG 60.164 44.000 0.00 0.00 34.31 3.16
476 4747 5.876357 TCCAGCCATTCTTTACTAAACAGT 58.124 37.500 0.00 0.00 0.00 3.55
477 4748 7.011499 TCCAGCCATTCTTTACTAAACAGTA 57.989 36.000 0.00 0.00 0.00 2.74
478 4749 6.877322 TCCAGCCATTCTTTACTAAACAGTAC 59.123 38.462 0.00 0.00 0.00 2.73
479 4750 6.653320 CCAGCCATTCTTTACTAAACAGTACA 59.347 38.462 0.00 0.00 0.00 2.90
480 4751 7.174253 CCAGCCATTCTTTACTAAACAGTACAA 59.826 37.037 0.00 0.00 0.00 2.41
481 4752 8.564574 CAGCCATTCTTTACTAAACAGTACAAA 58.435 33.333 0.00 0.00 0.00 2.83
482 4753 8.784043 AGCCATTCTTTACTAAACAGTACAAAG 58.216 33.333 0.00 0.00 0.00 2.77
483 4754 8.780249 GCCATTCTTTACTAAACAGTACAAAGA 58.220 33.333 0.00 0.00 0.00 2.52
498 4769 9.349713 ACAGTACAAAGAAATCATAAGAAACCA 57.650 29.630 0.00 0.00 0.00 3.67
507 4778 9.412460 AGAAATCATAAGAAACCATGATTAGCA 57.588 29.630 9.51 0.00 46.26 3.49
512 4783 9.851686 TCATAAGAAACCATGATTAGCATTACT 57.148 29.630 0.00 0.00 34.15 2.24
529 4800 6.980397 AGCATTACTAATTACTTGGCAAATGC 59.020 34.615 14.89 14.89 41.16 3.56
530 4801 6.980397 GCATTACTAATTACTTGGCAAATGCT 59.020 34.615 15.25 0.00 39.63 3.79
531 4802 7.043192 GCATTACTAATTACTTGGCAAATGCTG 60.043 37.037 15.25 1.25 39.63 4.41
532 4803 5.329035 ACTAATTACTTGGCAAATGCTGG 57.671 39.130 0.00 0.00 41.70 4.85
533 4804 3.615224 AATTACTTGGCAAATGCTGGG 57.385 42.857 0.00 0.00 41.70 4.45
534 4805 0.607620 TTACTTGGCAAATGCTGGGC 59.392 50.000 0.00 0.00 41.70 5.36
535 4806 0.541530 TACTTGGCAAATGCTGGGCA 60.542 50.000 0.00 0.00 44.86 5.36
536 4807 1.371932 CTTGGCAAATGCTGGGCAA 59.628 52.632 0.00 0.00 43.62 4.52
537 4808 0.952010 CTTGGCAAATGCTGGGCAAC 60.952 55.000 0.00 0.00 43.62 4.17
538 4809 1.693152 TTGGCAAATGCTGGGCAACA 61.693 50.000 0.00 0.00 43.62 3.33
539 4810 1.071128 GGCAAATGCTGGGCAACAA 59.929 52.632 5.25 0.00 43.62 2.83
540 4811 1.229975 GGCAAATGCTGGGCAACAAC 61.230 55.000 5.25 0.00 43.62 3.32
541 4812 1.559149 GCAAATGCTGGGCAACAACG 61.559 55.000 0.00 0.00 43.62 4.10
542 4813 1.300853 AAATGCTGGGCAACAACGC 60.301 52.632 0.00 0.00 43.62 4.84
543 4814 1.747325 AAATGCTGGGCAACAACGCT 61.747 50.000 0.00 0.00 43.62 5.07
544 4815 2.424705 AATGCTGGGCAACAACGCTG 62.425 55.000 0.00 0.00 43.62 5.18
545 4816 3.595758 GCTGGGCAACAACGCTGT 61.596 61.111 0.00 0.00 37.39 4.40
546 4817 2.332514 CTGGGCAACAACGCTGTG 59.667 61.111 0.00 0.00 35.37 3.66
547 4818 2.439338 TGGGCAACAACGCTGTGT 60.439 55.556 0.00 0.00 35.37 3.72
548 4819 1.153147 TGGGCAACAACGCTGTGTA 60.153 52.632 0.00 0.00 35.37 2.90
549 4820 0.748367 TGGGCAACAACGCTGTGTAA 60.748 50.000 0.00 0.00 35.37 2.41
550 4821 0.382515 GGGCAACAACGCTGTGTAAA 59.617 50.000 0.00 0.00 35.37 2.01
551 4822 1.599419 GGGCAACAACGCTGTGTAAAG 60.599 52.381 0.00 0.00 35.37 1.85
552 4823 1.332375 GGCAACAACGCTGTGTAAAGA 59.668 47.619 0.00 0.00 35.37 2.52
553 4824 2.223386 GGCAACAACGCTGTGTAAAGAA 60.223 45.455 0.00 0.00 35.37 2.52
554 4825 3.550030 GGCAACAACGCTGTGTAAAGAAT 60.550 43.478 0.00 0.00 35.37 2.40
555 4826 4.041723 GCAACAACGCTGTGTAAAGAATT 58.958 39.130 0.00 0.00 35.37 2.17
556 4827 4.502645 GCAACAACGCTGTGTAAAGAATTT 59.497 37.500 0.00 0.00 37.78 1.82
557 4828 5.554324 GCAACAACGCTGTGTAAAGAATTTG 60.554 40.000 0.00 0.00 35.58 2.32
558 4829 4.041723 ACAACGCTGTGTAAAGAATTTGC 58.958 39.130 0.00 0.00 41.31 3.68
559 4830 3.282831 ACGCTGTGTAAAGAATTTGCC 57.717 42.857 0.00 0.00 40.14 4.52
560 4831 2.030274 ACGCTGTGTAAAGAATTTGCCC 60.030 45.455 0.00 0.00 40.14 5.36
561 4832 2.671070 CGCTGTGTAAAGAATTTGCCCC 60.671 50.000 0.00 0.00 40.14 5.80
562 4833 2.671070 GCTGTGTAAAGAATTTGCCCCG 60.671 50.000 0.00 0.00 40.14 5.73
563 4834 1.889829 TGTGTAAAGAATTTGCCCCGG 59.110 47.619 0.00 0.00 40.14 5.73
564 4835 0.892063 TGTAAAGAATTTGCCCCGGC 59.108 50.000 0.00 0.00 40.14 6.13
565 4836 1.182667 GTAAAGAATTTGCCCCGGCT 58.817 50.000 7.35 0.00 39.63 5.52
566 4837 1.134367 GTAAAGAATTTGCCCCGGCTC 59.866 52.381 7.35 0.00 39.63 4.70
567 4838 1.257750 AAAGAATTTGCCCCGGCTCC 61.258 55.000 7.35 0.00 36.60 4.70
568 4839 2.043953 GAATTTGCCCCGGCTCCT 60.044 61.111 7.35 0.00 42.51 3.69
569 4840 1.682344 GAATTTGCCCCGGCTCCTT 60.682 57.895 7.35 0.00 42.51 3.36
570 4841 1.229177 AATTTGCCCCGGCTCCTTT 60.229 52.632 7.35 0.00 42.51 3.11
571 4842 0.040499 AATTTGCCCCGGCTCCTTTA 59.960 50.000 7.35 0.00 42.51 1.85
572 4843 0.395724 ATTTGCCCCGGCTCCTTTAG 60.396 55.000 7.35 0.00 42.51 1.85
581 4852 4.116878 CTCCTTTAGCTCGCTGGC 57.883 61.111 0.85 0.00 0.00 4.85
582 4853 1.519719 CTCCTTTAGCTCGCTGGCT 59.480 57.895 0.85 5.66 45.29 4.75
583 4854 0.529555 CTCCTTTAGCTCGCTGGCTC 60.530 60.000 0.85 0.00 42.97 4.70
584 4855 1.522580 CCTTTAGCTCGCTGGCTCC 60.523 63.158 0.85 0.00 42.97 4.70
585 4856 1.880340 CTTTAGCTCGCTGGCTCCG 60.880 63.158 0.85 0.00 42.97 4.63
586 4857 4.514577 TTAGCTCGCTGGCTCCGC 62.515 66.667 0.85 0.00 42.97 5.54
597 4868 2.895680 GCTCCGCCACTGATCTGA 59.104 61.111 6.60 0.00 0.00 3.27
598 4869 1.227205 GCTCCGCCACTGATCTGAG 60.227 63.158 6.60 0.00 0.00 3.35
599 4870 1.227205 CTCCGCCACTGATCTGAGC 60.227 63.158 6.60 7.78 0.00 4.26
600 4871 1.674764 CTCCGCCACTGATCTGAGCT 61.675 60.000 6.60 0.00 0.00 4.09
601 4872 1.521010 CCGCCACTGATCTGAGCTG 60.521 63.158 6.60 0.00 0.00 4.24
602 4873 1.514553 CGCCACTGATCTGAGCTGA 59.485 57.895 6.60 0.00 0.00 4.26
603 4874 0.805322 CGCCACTGATCTGAGCTGAC 60.805 60.000 6.60 0.00 0.00 3.51
604 4875 0.461693 GCCACTGATCTGAGCTGACC 60.462 60.000 6.60 0.00 0.00 4.02
605 4876 1.193323 CCACTGATCTGAGCTGACCT 58.807 55.000 6.60 0.00 0.00 3.85
606 4877 1.134759 CCACTGATCTGAGCTGACCTG 60.135 57.143 6.60 0.00 0.00 4.00
607 4878 1.134759 CACTGATCTGAGCTGACCTGG 60.135 57.143 6.60 0.00 0.00 4.45
608 4879 0.179078 CTGATCTGAGCTGACCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
609 4880 0.616964 TGATCTGAGCTGACCTGGCT 60.617 55.000 0.00 0.00 43.26 4.75
614 4885 2.604686 AGCTGACCTGGCTCCGAA 60.605 61.111 0.00 0.00 34.70 4.30
615 4886 2.435059 GCTGACCTGGCTCCGAAC 60.435 66.667 0.00 0.00 0.00 3.95
616 4887 2.266055 CTGACCTGGCTCCGAACC 59.734 66.667 0.00 0.00 0.00 3.62
617 4888 2.525629 TGACCTGGCTCCGAACCA 60.526 61.111 0.00 0.00 35.40 3.67
618 4889 2.047179 GACCTGGCTCCGAACCAC 60.047 66.667 0.00 0.00 32.49 4.16
619 4890 3.607370 GACCTGGCTCCGAACCACC 62.607 68.421 0.00 0.00 32.49 4.61
620 4891 4.410400 CCTGGCTCCGAACCACCC 62.410 72.222 0.00 0.00 32.49 4.61
621 4892 4.760047 CTGGCTCCGAACCACCCG 62.760 72.222 0.00 0.00 32.49 5.28
634 4905 4.988598 ACCCGCCGCACAACAGAG 62.989 66.667 0.00 0.00 0.00 3.35
636 4907 4.988598 CCGCCGCACAACAGAGGT 62.989 66.667 0.00 0.00 0.00 3.85
637 4908 3.716006 CGCCGCACAACAGAGGTG 61.716 66.667 0.00 0.00 39.25 4.00
638 4909 3.357079 GCCGCACAACAGAGGTGG 61.357 66.667 0.00 0.00 36.76 4.61
639 4910 2.111043 CCGCACAACAGAGGTGGT 59.889 61.111 0.00 0.00 36.76 4.16
640 4911 1.525995 CCGCACAACAGAGGTGGTT 60.526 57.895 0.00 0.00 36.76 3.67
641 4912 1.101049 CCGCACAACAGAGGTGGTTT 61.101 55.000 0.00 0.00 36.76 3.27
642 4913 0.307760 CGCACAACAGAGGTGGTTTC 59.692 55.000 0.00 0.00 36.76 2.78
643 4914 0.307760 GCACAACAGAGGTGGTTTCG 59.692 55.000 0.00 0.00 36.76 3.46
644 4915 0.307760 CACAACAGAGGTGGTTTCGC 59.692 55.000 0.00 0.00 32.65 4.70
645 4916 0.180406 ACAACAGAGGTGGTTTCGCT 59.820 50.000 0.00 0.00 0.00 4.93
646 4917 0.588252 CAACAGAGGTGGTTTCGCTG 59.412 55.000 0.00 0.00 37.90 5.18
647 4918 1.166531 AACAGAGGTGGTTTCGCTGC 61.167 55.000 0.00 0.00 35.86 5.25
648 4919 1.597854 CAGAGGTGGTTTCGCTGCA 60.598 57.895 0.00 0.00 0.00 4.41
649 4920 0.957395 CAGAGGTGGTTTCGCTGCAT 60.957 55.000 0.00 0.00 0.00 3.96
650 4921 0.613260 AGAGGTGGTTTCGCTGCATA 59.387 50.000 0.00 0.00 0.00 3.14
651 4922 0.727398 GAGGTGGTTTCGCTGCATAC 59.273 55.000 0.00 0.00 0.00 2.39
652 4923 0.676782 AGGTGGTTTCGCTGCATACC 60.677 55.000 0.00 4.19 0.00 2.73
653 4924 0.676782 GGTGGTTTCGCTGCATACCT 60.677 55.000 13.64 0.00 0.00 3.08
654 4925 1.406341 GGTGGTTTCGCTGCATACCTA 60.406 52.381 13.64 1.58 0.00 3.08
655 4926 2.561569 GTGGTTTCGCTGCATACCTAT 58.438 47.619 13.64 0.00 0.00 2.57
656 4927 3.493699 GGTGGTTTCGCTGCATACCTATA 60.494 47.826 13.64 0.00 0.00 1.31
657 4928 4.124238 GTGGTTTCGCTGCATACCTATAA 58.876 43.478 13.64 0.00 0.00 0.98
658 4929 4.025145 GTGGTTTCGCTGCATACCTATAAC 60.025 45.833 13.64 3.14 0.00 1.89
659 4930 4.124238 GGTTTCGCTGCATACCTATAACA 58.876 43.478 0.00 0.00 0.00 2.41
660 4931 4.211374 GGTTTCGCTGCATACCTATAACAG 59.789 45.833 0.00 0.00 0.00 3.16
661 4932 4.929819 TTCGCTGCATACCTATAACAGA 57.070 40.909 0.00 0.00 0.00 3.41
662 4933 4.929819 TCGCTGCATACCTATAACAGAA 57.070 40.909 0.00 0.00 0.00 3.02
663 4934 4.871513 TCGCTGCATACCTATAACAGAAG 58.128 43.478 0.00 0.00 0.00 2.85
664 4935 3.990469 CGCTGCATACCTATAACAGAAGG 59.010 47.826 0.00 0.00 38.93 3.46
665 4936 4.319177 GCTGCATACCTATAACAGAAGGG 58.681 47.826 0.00 0.00 37.18 3.95
666 4937 4.804261 GCTGCATACCTATAACAGAAGGGG 60.804 50.000 0.00 0.00 37.18 4.79
667 4938 4.303794 TGCATACCTATAACAGAAGGGGT 58.696 43.478 0.00 0.00 37.18 4.95
668 4939 4.102524 TGCATACCTATAACAGAAGGGGTG 59.897 45.833 0.00 0.00 37.18 4.61
669 4940 4.505039 GCATACCTATAACAGAAGGGGTGG 60.505 50.000 0.00 0.00 37.18 4.61
670 4941 3.216230 ACCTATAACAGAAGGGGTGGT 57.784 47.619 0.00 0.00 37.18 4.16
671 4942 2.844348 ACCTATAACAGAAGGGGTGGTG 59.156 50.000 0.00 0.00 37.18 4.17
672 4943 2.421529 CCTATAACAGAAGGGGTGGTGC 60.422 54.545 0.00 0.00 0.00 5.01
673 4944 0.331616 ATAACAGAAGGGGTGGTGCC 59.668 55.000 0.00 0.00 0.00 5.01
674 4945 2.119484 TAACAGAAGGGGTGGTGCCG 62.119 60.000 0.00 0.00 38.44 5.69
681 4952 4.016706 GGGTGGTGCCGCACTAGT 62.017 66.667 22.41 0.00 38.44 2.57
682 4953 2.434359 GGTGGTGCCGCACTAGTC 60.434 66.667 22.41 8.67 34.40 2.59
683 4954 2.434359 GTGGTGCCGCACTAGTCC 60.434 66.667 22.41 6.74 34.40 3.85
684 4955 2.920384 TGGTGCCGCACTAGTCCA 60.920 61.111 22.41 9.41 34.40 4.02
685 4956 2.125512 GGTGCCGCACTAGTCCAG 60.126 66.667 22.41 0.00 34.40 3.86
686 4957 2.815647 GTGCCGCACTAGTCCAGC 60.816 66.667 16.51 0.00 0.00 4.85
687 4958 2.997315 TGCCGCACTAGTCCAGCT 60.997 61.111 0.00 0.00 0.00 4.24
688 4959 2.202810 GCCGCACTAGTCCAGCTC 60.203 66.667 0.00 0.00 0.00 4.09
689 4960 2.716017 GCCGCACTAGTCCAGCTCT 61.716 63.158 0.00 0.00 0.00 4.09
690 4961 1.893786 CCGCACTAGTCCAGCTCTT 59.106 57.895 0.00 0.00 0.00 2.85
691 4962 0.459237 CCGCACTAGTCCAGCTCTTG 60.459 60.000 0.00 0.00 0.00 3.02
692 4963 0.528017 CGCACTAGTCCAGCTCTTGA 59.472 55.000 0.00 0.00 0.00 3.02
693 4964 1.135915 CGCACTAGTCCAGCTCTTGAT 59.864 52.381 0.00 0.00 0.00 2.57
694 4965 2.797792 CGCACTAGTCCAGCTCTTGATC 60.798 54.545 0.00 0.00 0.00 2.92
695 4966 2.167281 GCACTAGTCCAGCTCTTGATCA 59.833 50.000 0.00 0.00 0.00 2.92
696 4967 3.779759 CACTAGTCCAGCTCTTGATCAC 58.220 50.000 0.00 0.00 0.00 3.06
697 4968 3.446873 CACTAGTCCAGCTCTTGATCACT 59.553 47.826 0.00 0.00 0.00 3.41
698 4969 4.081752 CACTAGTCCAGCTCTTGATCACTT 60.082 45.833 0.00 0.00 0.00 3.16
699 4970 3.331478 AGTCCAGCTCTTGATCACTTG 57.669 47.619 0.00 0.00 0.00 3.16
700 4971 2.636893 AGTCCAGCTCTTGATCACTTGT 59.363 45.455 0.00 0.00 0.00 3.16
701 4972 2.740981 GTCCAGCTCTTGATCACTTGTG 59.259 50.000 0.00 0.00 0.00 3.33
702 4973 2.634453 TCCAGCTCTTGATCACTTGTGA 59.366 45.455 5.89 5.89 0.00 3.58
703 4974 3.262660 TCCAGCTCTTGATCACTTGTGAT 59.737 43.478 15.16 15.16 0.00 3.06
704 4975 3.622163 CCAGCTCTTGATCACTTGTGATC 59.378 47.826 27.45 27.45 43.59 2.92
705 4976 3.622163 CAGCTCTTGATCACTTGTGATCC 59.378 47.826 29.55 18.82 42.88 3.36
706 4977 3.518705 AGCTCTTGATCACTTGTGATCCT 59.481 43.478 29.55 20.22 42.88 3.24
707 4978 3.622163 GCTCTTGATCACTTGTGATCCTG 59.378 47.826 29.55 23.47 42.88 3.86
708 4979 4.622457 GCTCTTGATCACTTGTGATCCTGA 60.622 45.833 29.55 25.32 42.88 3.86
709 4980 4.825422 TCTTGATCACTTGTGATCCTGAC 58.175 43.478 29.55 13.92 42.88 3.51
710 4981 3.236632 TGATCACTTGTGATCCTGACG 57.763 47.619 29.55 0.00 42.88 4.35
711 4982 2.562738 TGATCACTTGTGATCCTGACGT 59.437 45.455 29.55 5.38 42.88 4.34
712 4983 3.006859 TGATCACTTGTGATCCTGACGTT 59.993 43.478 29.55 4.76 42.88 3.99
713 4984 4.219725 TGATCACTTGTGATCCTGACGTTA 59.780 41.667 29.55 13.70 42.88 3.18
714 4985 4.594123 TCACTTGTGATCCTGACGTTAA 57.406 40.909 0.00 0.00 0.00 2.01
715 4986 4.951254 TCACTTGTGATCCTGACGTTAAA 58.049 39.130 0.00 0.00 0.00 1.52
716 4987 4.748102 TCACTTGTGATCCTGACGTTAAAC 59.252 41.667 0.00 0.00 0.00 2.01
717 4988 9.440597 GATCACTTGTGATCCTGACGTTAAACG 62.441 44.444 25.16 0.00 41.77 3.60
718 4989 3.646611 TGTGATCCTGACGTTAAACGA 57.353 42.857 0.00 0.00 46.05 3.85
719 4990 3.979948 TGTGATCCTGACGTTAAACGAA 58.020 40.909 0.00 0.00 46.05 3.85
720 4991 3.985279 TGTGATCCTGACGTTAAACGAAG 59.015 43.478 0.00 0.00 46.05 3.79
721 4992 2.991190 TGATCCTGACGTTAAACGAAGC 59.009 45.455 0.00 0.00 46.05 3.86
722 4993 2.512485 TCCTGACGTTAAACGAAGCA 57.488 45.000 0.00 0.00 46.05 3.91
723 4994 2.400399 TCCTGACGTTAAACGAAGCAG 58.600 47.619 0.00 0.00 46.05 4.24
724 4995 2.132762 CCTGACGTTAAACGAAGCAGT 58.867 47.619 0.00 0.00 46.05 4.40
725 4996 2.096909 CCTGACGTTAAACGAAGCAGTG 60.097 50.000 0.00 0.00 46.05 3.66
726 4997 1.259507 TGACGTTAAACGAAGCAGTGC 59.740 47.619 7.13 7.13 46.05 4.40
727 4998 1.259507 GACGTTAAACGAAGCAGTGCA 59.740 47.619 19.20 0.00 46.05 4.57
728 4999 1.260561 ACGTTAAACGAAGCAGTGCAG 59.739 47.619 19.20 10.69 46.05 4.41
729 5000 1.260561 CGTTAAACGAAGCAGTGCAGT 59.739 47.619 19.20 11.37 46.05 4.40
730 5001 2.639751 GTTAAACGAAGCAGTGCAGTG 58.360 47.619 19.20 17.56 0.00 3.66
731 5002 2.232756 TAAACGAAGCAGTGCAGTGA 57.767 45.000 25.76 0.00 0.00 3.41
732 5003 1.597742 AAACGAAGCAGTGCAGTGAT 58.402 45.000 25.76 17.04 0.00 3.06
733 5004 0.870393 AACGAAGCAGTGCAGTGATG 59.130 50.000 25.76 10.55 0.00 3.07
734 5005 0.033920 ACGAAGCAGTGCAGTGATGA 59.966 50.000 25.76 0.00 0.00 2.92
735 5006 1.150827 CGAAGCAGTGCAGTGATGAA 58.849 50.000 25.76 0.00 0.00 2.57
736 5007 1.532437 CGAAGCAGTGCAGTGATGAAA 59.468 47.619 25.76 0.00 0.00 2.69
737 5008 2.663879 CGAAGCAGTGCAGTGATGAAAC 60.664 50.000 25.76 10.41 0.00 2.78
738 5009 0.870393 AGCAGTGCAGTGATGAAACG 59.130 50.000 25.76 0.00 0.00 3.60
739 5010 0.727122 GCAGTGCAGTGATGAAACGC 60.727 55.000 25.76 2.93 0.00 4.84
740 5011 0.870393 CAGTGCAGTGATGAAACGCT 59.130 50.000 16.94 0.00 0.00 5.07
741 5012 1.136141 CAGTGCAGTGATGAAACGCTC 60.136 52.381 16.94 0.00 0.00 5.03
742 5013 1.151668 GTGCAGTGATGAAACGCTCT 58.848 50.000 0.00 0.00 0.00 4.09
743 5014 1.136141 GTGCAGTGATGAAACGCTCTG 60.136 52.381 0.00 0.00 0.00 3.35
744 5015 1.151668 GCAGTGATGAAACGCTCTGT 58.848 50.000 0.00 0.00 0.00 3.41
745 5016 1.136141 GCAGTGATGAAACGCTCTGTG 60.136 52.381 0.00 0.00 0.00 3.66
746 5017 1.462283 CAGTGATGAAACGCTCTGTGG 59.538 52.381 0.00 0.00 0.00 4.17
747 5018 0.166814 GTGATGAAACGCTCTGTGGC 59.833 55.000 0.00 0.00 0.00 5.01
748 5019 0.250252 TGATGAAACGCTCTGTGGCA 60.250 50.000 0.00 0.00 0.00 4.92
749 5020 0.874390 GATGAAACGCTCTGTGGCAA 59.126 50.000 0.00 0.00 0.00 4.52
750 5021 0.593128 ATGAAACGCTCTGTGGCAAC 59.407 50.000 0.00 0.00 0.00 4.17
751 5022 0.463654 TGAAACGCTCTGTGGCAACT 60.464 50.000 0.00 0.00 37.61 3.16
752 5023 0.663153 GAAACGCTCTGTGGCAACTT 59.337 50.000 0.00 0.00 37.61 2.66
753 5024 0.663153 AAACGCTCTGTGGCAACTTC 59.337 50.000 0.00 0.00 37.61 3.01
754 5025 0.179045 AACGCTCTGTGGCAACTTCT 60.179 50.000 0.00 0.00 37.61 2.85
755 5026 0.179045 ACGCTCTGTGGCAACTTCTT 60.179 50.000 0.00 0.00 37.61 2.52
756 5027 0.236711 CGCTCTGTGGCAACTTCTTG 59.763 55.000 0.00 0.00 37.61 3.02
757 5028 0.595095 GCTCTGTGGCAACTTCTTGG 59.405 55.000 0.00 0.00 37.61 3.61
758 5029 1.242076 CTCTGTGGCAACTTCTTGGG 58.758 55.000 0.00 0.00 37.61 4.12
759 5030 0.550914 TCTGTGGCAACTTCTTGGGT 59.449 50.000 0.00 0.00 37.61 4.51
760 5031 0.954452 CTGTGGCAACTTCTTGGGTC 59.046 55.000 0.00 0.00 37.61 4.46
761 5032 0.817634 TGTGGCAACTTCTTGGGTCG 60.818 55.000 0.00 0.00 37.61 4.79
762 5033 0.818040 GTGGCAACTTCTTGGGTCGT 60.818 55.000 0.00 0.00 37.61 4.34
763 5034 0.534203 TGGCAACTTCTTGGGTCGTC 60.534 55.000 0.00 0.00 37.61 4.20
764 5035 0.534203 GGCAACTTCTTGGGTCGTCA 60.534 55.000 0.00 0.00 0.00 4.35
765 5036 0.868406 GCAACTTCTTGGGTCGTCAG 59.132 55.000 0.00 0.00 0.00 3.51
766 5037 1.810412 GCAACTTCTTGGGTCGTCAGT 60.810 52.381 0.00 0.00 0.00 3.41
767 5038 2.135933 CAACTTCTTGGGTCGTCAGTC 58.864 52.381 0.00 0.00 0.00 3.51
768 5039 0.314302 ACTTCTTGGGTCGTCAGTCG 59.686 55.000 0.00 0.00 41.41 4.18
769 5040 0.314302 CTTCTTGGGTCGTCAGTCGT 59.686 55.000 0.00 0.00 40.80 4.34
770 5041 0.313043 TTCTTGGGTCGTCAGTCGTC 59.687 55.000 0.00 0.00 40.80 4.20
771 5042 0.820482 TCTTGGGTCGTCAGTCGTCA 60.820 55.000 0.00 0.00 40.80 4.35
772 5043 0.663568 CTTGGGTCGTCAGTCGTCAC 60.664 60.000 0.00 0.00 40.80 3.67
773 5044 1.385756 TTGGGTCGTCAGTCGTCACA 61.386 55.000 0.00 0.00 38.96 3.58
774 5045 1.361271 GGGTCGTCAGTCGTCACAA 59.639 57.895 0.00 0.00 40.80 3.33
775 5046 0.938168 GGGTCGTCAGTCGTCACAAC 60.938 60.000 0.00 0.00 40.80 3.32
776 5047 0.030369 GGTCGTCAGTCGTCACAACT 59.970 55.000 0.00 0.00 40.80 3.16
777 5048 1.535437 GGTCGTCAGTCGTCACAACTT 60.535 52.381 0.00 0.00 40.80 2.66
778 5049 1.779724 GTCGTCAGTCGTCACAACTTC 59.220 52.381 0.00 0.00 40.80 3.01
779 5050 1.129326 CGTCAGTCGTCACAACTTCC 58.871 55.000 0.00 0.00 34.52 3.46
780 5051 1.535226 CGTCAGTCGTCACAACTTCCA 60.535 52.381 0.00 0.00 34.52 3.53
781 5052 1.859080 GTCAGTCGTCACAACTTCCAC 59.141 52.381 0.00 0.00 0.00 4.02
782 5053 1.202486 TCAGTCGTCACAACTTCCACC 60.202 52.381 0.00 0.00 0.00 4.61
783 5054 1.120530 AGTCGTCACAACTTCCACCT 58.879 50.000 0.00 0.00 0.00 4.00
784 5055 1.202533 AGTCGTCACAACTTCCACCTG 60.203 52.381 0.00 0.00 0.00 4.00
785 5056 1.116308 TCGTCACAACTTCCACCTGA 58.884 50.000 0.00 0.00 0.00 3.86
786 5057 1.691976 TCGTCACAACTTCCACCTGAT 59.308 47.619 0.00 0.00 0.00 2.90
787 5058 1.800586 CGTCACAACTTCCACCTGATG 59.199 52.381 0.00 0.00 0.00 3.07
788 5059 2.547855 CGTCACAACTTCCACCTGATGA 60.548 50.000 0.00 0.00 0.00 2.92
789 5060 3.070018 GTCACAACTTCCACCTGATGAG 58.930 50.000 0.00 0.00 0.00 2.90
790 5061 2.705658 TCACAACTTCCACCTGATGAGT 59.294 45.455 0.00 0.00 0.00 3.41
791 5062 3.070018 CACAACTTCCACCTGATGAGTC 58.930 50.000 0.00 0.00 0.00 3.36
792 5063 2.975489 ACAACTTCCACCTGATGAGTCT 59.025 45.455 0.00 0.00 0.00 3.24
793 5064 3.392616 ACAACTTCCACCTGATGAGTCTT 59.607 43.478 0.00 0.00 0.00 3.01
794 5065 3.971245 ACTTCCACCTGATGAGTCTTC 57.029 47.619 0.00 0.00 0.00 2.87
795 5066 3.242867 ACTTCCACCTGATGAGTCTTCA 58.757 45.455 8.33 8.33 37.81 3.02
796 5067 3.260380 ACTTCCACCTGATGAGTCTTCAG 59.740 47.826 23.02 23.02 40.25 3.02
801 5072 2.376808 CTGATGAGTCTTCAGGCGTT 57.623 50.000 22.49 0.00 37.53 4.84
802 5073 1.998315 CTGATGAGTCTTCAGGCGTTG 59.002 52.381 22.49 3.06 37.53 4.10
803 5074 1.618343 TGATGAGTCTTCAGGCGTTGA 59.382 47.619 4.66 0.00 36.61 3.18
804 5075 2.037121 TGATGAGTCTTCAGGCGTTGAA 59.963 45.455 4.66 4.77 43.40 2.69
805 5076 2.839486 TGAGTCTTCAGGCGTTGAAT 57.161 45.000 5.22 0.00 44.48 2.57
806 5077 3.126001 TGAGTCTTCAGGCGTTGAATT 57.874 42.857 5.22 0.00 44.48 2.17
807 5078 2.807967 TGAGTCTTCAGGCGTTGAATTG 59.192 45.455 5.22 0.00 44.48 2.32
808 5079 3.067106 GAGTCTTCAGGCGTTGAATTGA 58.933 45.455 5.22 0.00 44.48 2.57
809 5080 3.070018 AGTCTTCAGGCGTTGAATTGAG 58.930 45.455 5.22 0.00 44.48 3.02
810 5081 1.806542 TCTTCAGGCGTTGAATTGAGC 59.193 47.619 5.22 0.00 44.48 4.26
811 5082 1.536766 CTTCAGGCGTTGAATTGAGCA 59.463 47.619 5.22 0.00 44.48 4.26
812 5083 1.603456 TCAGGCGTTGAATTGAGCAA 58.397 45.000 0.00 0.00 31.34 3.91
813 5084 1.266718 TCAGGCGTTGAATTGAGCAAC 59.733 47.619 0.00 0.00 41.57 4.17
814 5085 1.267806 CAGGCGTTGAATTGAGCAACT 59.732 47.619 0.00 0.00 42.53 3.16
815 5086 1.537202 AGGCGTTGAATTGAGCAACTC 59.463 47.619 0.00 0.00 42.53 3.01
816 5087 1.537202 GGCGTTGAATTGAGCAACTCT 59.463 47.619 0.00 0.00 42.53 3.24
817 5088 2.578495 GCGTTGAATTGAGCAACTCTG 58.422 47.619 0.00 0.00 42.53 3.35
818 5089 2.666619 GCGTTGAATTGAGCAACTCTGG 60.667 50.000 0.00 0.00 42.53 3.86
819 5090 2.666619 CGTTGAATTGAGCAACTCTGGC 60.667 50.000 0.00 0.00 42.53 4.85
820 5091 1.159285 TGAATTGAGCAACTCTGGCG 58.841 50.000 0.00 0.00 36.08 5.69
821 5092 0.449388 GAATTGAGCAACTCTGGCGG 59.551 55.000 0.00 0.00 36.08 6.13
973 5245 1.807886 CCTCTCGTAGGGTTCGTGG 59.192 63.158 0.00 0.00 42.32 4.94
1078 5350 5.942826 GTGAAGTCAGATCTGGGAGATTTTT 59.057 40.000 22.42 5.91 34.53 1.94
1500 5772 1.741706 CAACATCTGCTGCGGAATTCT 59.258 47.619 16.13 0.00 0.00 2.40
1510 5782 3.797039 CTGCGGAATTCTGGTGAGATTA 58.203 45.455 16.03 0.00 0.00 1.75
1671 5943 0.983467 TGGCCAGATTCTGCAGTGTA 59.017 50.000 14.67 0.76 0.00 2.90
1746 6018 0.988832 AGGACAAGAAATACGGGGCA 59.011 50.000 0.00 0.00 0.00 5.36
1892 6164 7.124298 TCCTGAAACAGTAGATACAGCTACAAT 59.876 37.037 7.35 0.00 42.47 2.71
1917 6189 1.418637 TCAAAAACTGGCCGTACCTCT 59.581 47.619 0.00 0.00 40.22 3.69
2574 8587 4.649674 TGGAGCGTCTTAAGTGGAGATTAT 59.350 41.667 1.63 0.00 0.00 1.28
2654 8667 1.277273 TGGGATGAGAGTCTGCAAGTG 59.723 52.381 0.00 0.00 33.76 3.16
2667 8680 4.515191 GTCTGCAAGTGACAGTTTTGGATA 59.485 41.667 0.00 0.00 36.50 2.59
2674 8687 5.437060 AGTGACAGTTTTGGATACTTGTGT 58.563 37.500 0.00 0.00 37.61 3.72
2693 8706 2.094649 TGTACGGTACATTGATGTGCGA 60.095 45.455 16.63 0.00 43.16 5.10
2880 8893 5.417754 TGAGCACTTCTCTCAATCTCAAT 57.582 39.130 0.00 0.00 42.38 2.57
3062 9075 1.909302 GATCTGTTCCCCCTCTCACAA 59.091 52.381 0.00 0.00 0.00 3.33
3107 9121 2.682494 GACCACTGCCCGGTCCTA 60.682 66.667 0.00 0.00 46.12 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.585047 AGCTAGTCATTTTTATCACGTTCCC 59.415 40.000 0.00 0.00 0.00 3.97
60 4331 9.559958 AAGCTTTGTCGACATATTTTGAATAAG 57.440 29.630 20.80 15.80 0.00 1.73
97 4368 9.462174 CTAATGCTAGACTTGAAGATCTTACAG 57.538 37.037 8.25 9.67 0.00 2.74
105 4376 7.120051 ACTCCTACTAATGCTAGACTTGAAGA 58.880 38.462 0.00 0.00 0.00 2.87
205 4476 3.181447 CCTAATCCATCATGTGCTGAGGT 60.181 47.826 0.00 0.00 37.28 3.85
207 4478 4.063689 GTCCTAATCCATCATGTGCTGAG 58.936 47.826 0.00 0.00 37.28 3.35
331 4602 6.239887 GGGCCCTTAATCTAGACATCATAACA 60.240 42.308 17.04 0.00 0.00 2.41
333 4604 5.250774 GGGGCCCTTAATCTAGACATCATAA 59.749 44.000 24.38 0.00 0.00 1.90
337 4608 2.028020 CGGGGCCCTTAATCTAGACATC 60.028 54.545 24.38 0.00 0.00 3.06
345 4616 0.324923 AAAACCCGGGGCCCTTAATC 60.325 55.000 27.92 2.70 0.00 1.75
383 4654 1.032114 GGGCCGGTCCTGAGATTTTG 61.032 60.000 20.78 0.00 34.39 2.44
405 4676 0.749649 CTCCGCCACTAGCTCAGATT 59.250 55.000 0.00 0.00 40.39 2.40
406 4677 1.743321 GCTCCGCCACTAGCTCAGAT 61.743 60.000 0.00 0.00 40.39 2.90
407 4678 2.418910 GCTCCGCCACTAGCTCAGA 61.419 63.158 0.00 0.00 40.39 3.27
408 4679 1.103987 TAGCTCCGCCACTAGCTCAG 61.104 60.000 0.00 0.00 45.92 3.35
409 4680 1.076995 TAGCTCCGCCACTAGCTCA 60.077 57.895 0.00 0.00 45.92 4.26
410 4681 1.657556 CTAGCTCCGCCACTAGCTC 59.342 63.158 0.00 0.00 45.92 4.09
413 4684 1.657556 GAGCTAGCTCCGCCACTAG 59.342 63.158 30.89 0.00 39.13 2.57
414 4685 3.843304 GAGCTAGCTCCGCCACTA 58.157 61.111 30.89 0.00 37.11 2.74
422 4693 4.273257 GTCGCGGGGAGCTAGCTC 62.273 72.222 32.65 32.65 45.59 4.09
449 4720 2.996631 AGTAAAGAATGGCTGGAGCAG 58.003 47.619 0.20 0.00 44.36 4.24
450 4721 4.568072 TTAGTAAAGAATGGCTGGAGCA 57.432 40.909 0.20 0.00 44.36 4.26
451 4722 4.700213 TGTTTAGTAAAGAATGGCTGGAGC 59.300 41.667 0.00 0.00 41.14 4.70
452 4723 5.940470 ACTGTTTAGTAAAGAATGGCTGGAG 59.060 40.000 0.00 0.00 34.74 3.86
453 4724 5.876357 ACTGTTTAGTAAAGAATGGCTGGA 58.124 37.500 0.00 0.00 34.74 3.86
454 4725 6.653320 TGTACTGTTTAGTAAAGAATGGCTGG 59.347 38.462 0.00 0.00 40.89 4.85
455 4726 7.667043 TGTACTGTTTAGTAAAGAATGGCTG 57.333 36.000 0.00 0.00 40.89 4.85
456 4727 8.685838 TTTGTACTGTTTAGTAAAGAATGGCT 57.314 30.769 0.00 0.00 40.89 4.75
457 4728 8.780249 TCTTTGTACTGTTTAGTAAAGAATGGC 58.220 33.333 0.00 0.00 40.89 4.40
472 4743 9.349713 TGGTTTCTTATGATTTCTTTGTACTGT 57.650 29.630 0.00 0.00 0.00 3.55
481 4752 9.412460 TGCTAATCATGGTTTCTTATGATTTCT 57.588 29.630 15.12 0.00 46.41 2.52
486 4757 9.851686 AGTAATGCTAATCATGGTTTCTTATGA 57.148 29.630 0.00 0.00 37.68 2.15
497 4768 9.831737 GCCAAGTAATTAGTAATGCTAATCATG 57.168 33.333 4.14 2.53 46.54 3.07
498 4769 9.573166 TGCCAAGTAATTAGTAATGCTAATCAT 57.427 29.630 4.14 0.00 46.54 2.45
499 4770 8.972458 TGCCAAGTAATTAGTAATGCTAATCA 57.028 30.769 4.14 0.00 46.54 2.57
503 4774 8.134895 GCATTTGCCAAGTAATTAGTAATGCTA 58.865 33.333 20.63 8.54 41.06 3.49
504 4775 6.980397 GCATTTGCCAAGTAATTAGTAATGCT 59.020 34.615 20.63 0.00 41.06 3.79
505 4776 6.980397 AGCATTTGCCAAGTAATTAGTAATGC 59.020 34.615 20.47 20.47 43.26 3.56
506 4777 7.436080 CCAGCATTTGCCAAGTAATTAGTAATG 59.564 37.037 0.00 7.80 43.38 1.90
507 4778 7.417797 CCCAGCATTTGCCAAGTAATTAGTAAT 60.418 37.037 0.00 0.00 43.38 1.89
508 4779 6.127479 CCCAGCATTTGCCAAGTAATTAGTAA 60.127 38.462 0.00 0.00 43.38 2.24
509 4780 5.359576 CCCAGCATTTGCCAAGTAATTAGTA 59.640 40.000 0.00 0.00 43.38 1.82
510 4781 4.160252 CCCAGCATTTGCCAAGTAATTAGT 59.840 41.667 0.00 0.00 43.38 2.24
511 4782 4.685924 CCCAGCATTTGCCAAGTAATTAG 58.314 43.478 0.00 0.00 43.38 1.73
512 4783 3.118811 GCCCAGCATTTGCCAAGTAATTA 60.119 43.478 0.00 0.00 43.38 1.40
513 4784 2.355007 GCCCAGCATTTGCCAAGTAATT 60.355 45.455 0.00 0.00 43.38 1.40
514 4785 1.207811 GCCCAGCATTTGCCAAGTAAT 59.792 47.619 0.00 0.00 43.38 1.89
515 4786 0.607620 GCCCAGCATTTGCCAAGTAA 59.392 50.000 0.00 0.00 43.38 2.24
516 4787 0.541530 TGCCCAGCATTTGCCAAGTA 60.542 50.000 0.00 0.00 43.38 2.24
517 4788 1.409251 TTGCCCAGCATTTGCCAAGT 61.409 50.000 0.00 0.00 43.38 3.16
518 4789 0.952010 GTTGCCCAGCATTTGCCAAG 60.952 55.000 0.00 0.00 43.38 3.61
519 4790 1.071128 GTTGCCCAGCATTTGCCAA 59.929 52.632 0.00 0.00 43.38 4.52
520 4791 1.693152 TTGTTGCCCAGCATTTGCCA 61.693 50.000 0.00 0.00 43.38 4.92
521 4792 1.071128 TTGTTGCCCAGCATTTGCC 59.929 52.632 0.00 0.00 43.38 4.52
522 4793 1.559149 CGTTGTTGCCCAGCATTTGC 61.559 55.000 0.00 0.00 38.76 3.68
523 4794 1.559149 GCGTTGTTGCCCAGCATTTG 61.559 55.000 0.00 0.00 38.76 2.32
524 4795 1.300853 GCGTTGTTGCCCAGCATTT 60.301 52.632 0.00 0.00 38.76 2.32
525 4796 2.202395 AGCGTTGTTGCCCAGCATT 61.202 52.632 0.00 0.00 38.76 3.56
526 4797 2.598394 AGCGTTGTTGCCCAGCAT 60.598 55.556 0.00 0.00 38.76 3.79
527 4798 3.594775 CAGCGTTGTTGCCCAGCA 61.595 61.111 0.00 0.00 36.47 4.41
528 4799 3.595758 ACAGCGTTGTTGCCCAGC 61.596 61.111 0.00 0.00 32.28 4.85
529 4800 1.163420 TACACAGCGTTGTTGCCCAG 61.163 55.000 0.63 0.00 34.62 4.45
530 4801 0.748367 TTACACAGCGTTGTTGCCCA 60.748 50.000 0.63 0.00 34.62 5.36
531 4802 0.382515 TTTACACAGCGTTGTTGCCC 59.617 50.000 0.63 0.00 34.62 5.36
532 4803 1.332375 TCTTTACACAGCGTTGTTGCC 59.668 47.619 0.63 0.00 34.62 4.52
533 4804 2.748461 TCTTTACACAGCGTTGTTGC 57.252 45.000 0.63 0.00 34.62 4.17
534 4805 5.554324 GCAAATTCTTTACACAGCGTTGTTG 60.554 40.000 0.63 1.19 34.62 3.33
535 4806 4.502645 GCAAATTCTTTACACAGCGTTGTT 59.497 37.500 0.63 0.00 34.62 2.83
536 4807 4.041723 GCAAATTCTTTACACAGCGTTGT 58.958 39.130 0.00 0.00 38.31 3.32
537 4808 3.425193 GGCAAATTCTTTACACAGCGTTG 59.575 43.478 0.00 0.00 0.00 4.10
538 4809 3.552068 GGGCAAATTCTTTACACAGCGTT 60.552 43.478 0.00 0.00 0.00 4.84
539 4810 2.030274 GGGCAAATTCTTTACACAGCGT 60.030 45.455 0.00 0.00 0.00 5.07
540 4811 2.595386 GGGCAAATTCTTTACACAGCG 58.405 47.619 0.00 0.00 0.00 5.18
541 4812 2.671070 CGGGGCAAATTCTTTACACAGC 60.671 50.000 0.00 0.00 0.00 4.40
542 4813 2.094752 CCGGGGCAAATTCTTTACACAG 60.095 50.000 0.00 0.00 0.00 3.66
543 4814 1.889829 CCGGGGCAAATTCTTTACACA 59.110 47.619 0.00 0.00 0.00 3.72
544 4815 1.403647 GCCGGGGCAAATTCTTTACAC 60.404 52.381 2.18 0.00 41.49 2.90
545 4816 0.892063 GCCGGGGCAAATTCTTTACA 59.108 50.000 2.18 0.00 41.49 2.41
546 4817 1.134367 GAGCCGGGGCAAATTCTTTAC 59.866 52.381 12.97 0.00 44.88 2.01
547 4818 1.470051 GAGCCGGGGCAAATTCTTTA 58.530 50.000 12.97 0.00 44.88 1.85
548 4819 1.257750 GGAGCCGGGGCAAATTCTTT 61.258 55.000 12.97 0.00 44.88 2.52
549 4820 1.682344 GGAGCCGGGGCAAATTCTT 60.682 57.895 12.97 0.00 44.88 2.52
550 4821 2.043953 GGAGCCGGGGCAAATTCT 60.044 61.111 12.97 0.00 44.88 2.40
551 4822 1.257750 AAAGGAGCCGGGGCAAATTC 61.258 55.000 12.97 0.10 44.88 2.17
552 4823 0.040499 TAAAGGAGCCGGGGCAAATT 59.960 50.000 12.97 4.14 44.88 1.82
553 4824 0.395724 CTAAAGGAGCCGGGGCAAAT 60.396 55.000 12.97 0.00 44.88 2.32
554 4825 1.001393 CTAAAGGAGCCGGGGCAAA 60.001 57.895 12.97 0.00 44.88 3.68
555 4826 2.674754 CTAAAGGAGCCGGGGCAA 59.325 61.111 12.97 0.00 44.88 4.52
556 4827 4.109675 GCTAAAGGAGCCGGGGCA 62.110 66.667 12.97 0.00 46.41 5.36
564 4835 0.529555 GAGCCAGCGAGCTAAAGGAG 60.530 60.000 3.33 0.00 45.15 3.69
565 4836 1.517832 GAGCCAGCGAGCTAAAGGA 59.482 57.895 3.33 0.00 45.15 3.36
566 4837 1.522580 GGAGCCAGCGAGCTAAAGG 60.523 63.158 3.33 0.00 45.15 3.11
567 4838 1.880340 CGGAGCCAGCGAGCTAAAG 60.880 63.158 3.33 0.00 45.15 1.85
568 4839 2.184322 CGGAGCCAGCGAGCTAAA 59.816 61.111 3.33 0.00 45.15 1.85
581 4852 1.227205 GCTCAGATCAGTGGCGGAG 60.227 63.158 0.00 8.78 0.00 4.63
582 4853 1.683707 AGCTCAGATCAGTGGCGGA 60.684 57.895 0.00 0.00 0.00 5.54
583 4854 1.521010 CAGCTCAGATCAGTGGCGG 60.521 63.158 0.00 0.00 0.00 6.13
584 4855 0.805322 GTCAGCTCAGATCAGTGGCG 60.805 60.000 0.00 0.00 0.00 5.69
585 4856 0.461693 GGTCAGCTCAGATCAGTGGC 60.462 60.000 0.00 0.00 0.00 5.01
586 4857 1.134759 CAGGTCAGCTCAGATCAGTGG 60.135 57.143 0.00 0.00 0.00 4.00
587 4858 1.134759 CCAGGTCAGCTCAGATCAGTG 60.135 57.143 0.00 0.00 0.00 3.66
588 4859 1.193323 CCAGGTCAGCTCAGATCAGT 58.807 55.000 0.00 0.00 0.00 3.41
589 4860 0.179078 GCCAGGTCAGCTCAGATCAG 60.179 60.000 0.00 0.00 0.00 2.90
590 4861 0.616964 AGCCAGGTCAGCTCAGATCA 60.617 55.000 0.00 0.00 34.91 2.92
591 4862 2.210424 AGCCAGGTCAGCTCAGATC 58.790 57.895 0.00 0.00 34.91 2.75
592 4863 4.476585 AGCCAGGTCAGCTCAGAT 57.523 55.556 0.00 0.00 34.91 2.90
597 4868 2.604686 TTCGGAGCCAGGTCAGCT 60.605 61.111 0.00 0.00 45.23 4.24
598 4869 2.435059 GTTCGGAGCCAGGTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
599 4870 2.266055 GGTTCGGAGCCAGGTCAG 59.734 66.667 5.96 0.00 0.00 3.51
600 4871 2.525629 TGGTTCGGAGCCAGGTCA 60.526 61.111 9.73 0.00 0.00 4.02
601 4872 2.047179 GTGGTTCGGAGCCAGGTC 60.047 66.667 14.30 0.00 36.57 3.85
602 4873 3.637273 GGTGGTTCGGAGCCAGGT 61.637 66.667 14.30 0.00 36.57 4.00
603 4874 4.410400 GGGTGGTTCGGAGCCAGG 62.410 72.222 14.30 0.00 36.57 4.45
604 4875 4.760047 CGGGTGGTTCGGAGCCAG 62.760 72.222 14.30 0.00 36.57 4.85
617 4888 4.988598 CTCTGTTGTGCGGCGGGT 62.989 66.667 9.78 0.00 0.00 5.28
619 4890 4.988598 ACCTCTGTTGTGCGGCGG 62.989 66.667 9.78 0.00 34.56 6.13
620 4891 3.716006 CACCTCTGTTGTGCGGCG 61.716 66.667 0.51 0.51 0.00 6.46
621 4892 3.357079 CCACCTCTGTTGTGCGGC 61.357 66.667 0.00 0.00 32.30 6.53
622 4893 1.101049 AAACCACCTCTGTTGTGCGG 61.101 55.000 0.00 0.00 32.30 5.69
623 4894 0.307760 GAAACCACCTCTGTTGTGCG 59.692 55.000 0.00 0.00 32.30 5.34
624 4895 0.307760 CGAAACCACCTCTGTTGTGC 59.692 55.000 0.00 0.00 32.30 4.57
625 4896 0.307760 GCGAAACCACCTCTGTTGTG 59.692 55.000 0.00 0.00 0.00 3.33
626 4897 0.180406 AGCGAAACCACCTCTGTTGT 59.820 50.000 0.00 0.00 0.00 3.32
627 4898 0.588252 CAGCGAAACCACCTCTGTTG 59.412 55.000 0.00 0.00 0.00 3.33
628 4899 1.166531 GCAGCGAAACCACCTCTGTT 61.167 55.000 0.00 0.00 0.00 3.16
629 4900 1.598130 GCAGCGAAACCACCTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
630 4901 0.957395 ATGCAGCGAAACCACCTCTG 60.957 55.000 0.00 0.00 0.00 3.35
631 4902 0.613260 TATGCAGCGAAACCACCTCT 59.387 50.000 0.00 0.00 0.00 3.69
632 4903 0.727398 GTATGCAGCGAAACCACCTC 59.273 55.000 0.00 0.00 0.00 3.85
633 4904 0.676782 GGTATGCAGCGAAACCACCT 60.677 55.000 5.89 0.00 32.04 4.00
634 4905 0.676782 AGGTATGCAGCGAAACCACC 60.677 55.000 11.93 2.11 34.29 4.61
635 4906 2.018542 TAGGTATGCAGCGAAACCAC 57.981 50.000 11.93 0.00 34.29 4.16
636 4907 4.124238 GTTATAGGTATGCAGCGAAACCA 58.876 43.478 11.93 1.07 34.29 3.67
637 4908 4.124238 TGTTATAGGTATGCAGCGAAACC 58.876 43.478 0.00 3.00 0.00 3.27
638 4909 5.047847 TCTGTTATAGGTATGCAGCGAAAC 58.952 41.667 0.00 0.00 0.00 2.78
639 4910 5.270893 TCTGTTATAGGTATGCAGCGAAA 57.729 39.130 0.00 0.00 0.00 3.46
640 4911 4.929819 TCTGTTATAGGTATGCAGCGAA 57.070 40.909 0.00 0.00 0.00 4.70
641 4912 4.262036 CCTTCTGTTATAGGTATGCAGCGA 60.262 45.833 0.00 0.00 0.00 4.93
642 4913 3.990469 CCTTCTGTTATAGGTATGCAGCG 59.010 47.826 0.00 0.00 0.00 5.18
643 4914 4.319177 CCCTTCTGTTATAGGTATGCAGC 58.681 47.826 0.00 0.00 0.00 5.25
644 4915 4.348168 ACCCCTTCTGTTATAGGTATGCAG 59.652 45.833 0.00 0.00 0.00 4.41
645 4916 4.102524 CACCCCTTCTGTTATAGGTATGCA 59.897 45.833 0.00 0.00 0.00 3.96
646 4917 4.505039 CCACCCCTTCTGTTATAGGTATGC 60.505 50.000 0.00 0.00 0.00 3.14
647 4918 4.658901 ACCACCCCTTCTGTTATAGGTATG 59.341 45.833 0.00 0.00 0.00 2.39
648 4919 4.658901 CACCACCCCTTCTGTTATAGGTAT 59.341 45.833 0.00 0.00 0.00 2.73
649 4920 4.035112 CACCACCCCTTCTGTTATAGGTA 58.965 47.826 0.00 0.00 0.00 3.08
650 4921 2.844348 CACCACCCCTTCTGTTATAGGT 59.156 50.000 0.00 0.00 0.00 3.08
651 4922 2.421529 GCACCACCCCTTCTGTTATAGG 60.422 54.545 0.00 0.00 0.00 2.57
652 4923 2.421529 GGCACCACCCCTTCTGTTATAG 60.422 54.545 0.00 0.00 0.00 1.31
653 4924 1.562475 GGCACCACCCCTTCTGTTATA 59.438 52.381 0.00 0.00 0.00 0.98
654 4925 0.331616 GGCACCACCCCTTCTGTTAT 59.668 55.000 0.00 0.00 0.00 1.89
655 4926 1.765074 GGCACCACCCCTTCTGTTA 59.235 57.895 0.00 0.00 0.00 2.41
656 4927 2.520968 GGCACCACCCCTTCTGTT 59.479 61.111 0.00 0.00 0.00 3.16
657 4928 3.953775 CGGCACCACCCCTTCTGT 61.954 66.667 0.00 0.00 33.26 3.41
663 4934 4.778143 CTAGTGCGGCACCACCCC 62.778 72.222 28.14 3.57 36.38 4.95
664 4935 3.952628 GACTAGTGCGGCACCACCC 62.953 68.421 28.14 12.61 36.38 4.61
665 4936 2.434359 GACTAGTGCGGCACCACC 60.434 66.667 28.14 12.26 36.38 4.61
666 4937 2.434359 GGACTAGTGCGGCACCAC 60.434 66.667 28.14 16.46 34.49 4.16
667 4938 2.920384 TGGACTAGTGCGGCACCA 60.920 61.111 28.14 16.66 34.49 4.17
668 4939 2.125512 CTGGACTAGTGCGGCACC 60.126 66.667 28.14 14.14 34.49 5.01
672 4943 0.459237 CAAGAGCTGGACTAGTGCGG 60.459 60.000 18.27 18.27 0.00 5.69
673 4944 0.528017 TCAAGAGCTGGACTAGTGCG 59.472 55.000 10.02 5.94 0.00 5.34
674 4945 2.167281 TGATCAAGAGCTGGACTAGTGC 59.833 50.000 7.56 7.56 0.00 4.40
675 4946 3.446873 AGTGATCAAGAGCTGGACTAGTG 59.553 47.826 0.00 0.00 0.00 2.74
676 4947 3.707316 AGTGATCAAGAGCTGGACTAGT 58.293 45.455 0.00 0.00 0.00 2.57
677 4948 4.081752 ACAAGTGATCAAGAGCTGGACTAG 60.082 45.833 0.00 0.00 0.00 2.57
678 4949 3.834813 ACAAGTGATCAAGAGCTGGACTA 59.165 43.478 0.00 0.00 0.00 2.59
679 4950 2.636893 ACAAGTGATCAAGAGCTGGACT 59.363 45.455 0.00 0.00 0.00 3.85
680 4951 2.740981 CACAAGTGATCAAGAGCTGGAC 59.259 50.000 0.00 0.00 0.00 4.02
681 4952 2.634453 TCACAAGTGATCAAGAGCTGGA 59.366 45.455 0.00 0.00 34.14 3.86
682 4953 3.049708 TCACAAGTGATCAAGAGCTGG 57.950 47.619 0.00 0.00 34.14 4.85
692 4963 7.767280 CGTTTAACGTCAGGATCACAAGTGAT 61.767 42.308 15.06 15.06 43.73 3.06
693 4964 4.594123 TTAACGTCAGGATCACAAGTGA 57.406 40.909 5.24 5.24 44.59 3.41
694 4965 4.376008 CGTTTAACGTCAGGATCACAAGTG 60.376 45.833 9.54 0.00 36.74 3.16
695 4966 3.739300 CGTTTAACGTCAGGATCACAAGT 59.261 43.478 9.54 0.00 36.74 3.16
696 4967 3.985279 TCGTTTAACGTCAGGATCACAAG 59.015 43.478 17.16 0.00 43.14 3.16
697 4968 3.979948 TCGTTTAACGTCAGGATCACAA 58.020 40.909 17.16 0.00 43.14 3.33
698 4969 3.646611 TCGTTTAACGTCAGGATCACA 57.353 42.857 17.16 0.00 43.14 3.58
699 4970 3.181533 GCTTCGTTTAACGTCAGGATCAC 60.182 47.826 17.16 0.00 43.14 3.06
700 4971 2.991190 GCTTCGTTTAACGTCAGGATCA 59.009 45.455 17.16 0.00 43.14 2.92
701 4972 2.991190 TGCTTCGTTTAACGTCAGGATC 59.009 45.455 17.16 3.74 43.14 3.36
702 4973 2.993899 CTGCTTCGTTTAACGTCAGGAT 59.006 45.455 17.16 0.00 43.14 3.24
703 4974 2.223876 ACTGCTTCGTTTAACGTCAGGA 60.224 45.455 25.76 19.42 43.14 3.86
704 4975 2.096909 CACTGCTTCGTTTAACGTCAGG 60.097 50.000 25.76 17.31 43.14 3.86
705 4976 2.659291 GCACTGCTTCGTTTAACGTCAG 60.659 50.000 23.10 23.10 43.14 3.51
706 4977 1.259507 GCACTGCTTCGTTTAACGTCA 59.740 47.619 17.16 12.14 43.14 4.35
707 4978 1.259507 TGCACTGCTTCGTTTAACGTC 59.740 47.619 17.16 8.46 43.14 4.34
708 4979 1.260561 CTGCACTGCTTCGTTTAACGT 59.739 47.619 17.16 0.00 43.14 3.99
709 4980 1.260561 ACTGCACTGCTTCGTTTAACG 59.739 47.619 11.60 11.60 44.19 3.18
710 4981 2.286833 TCACTGCACTGCTTCGTTTAAC 59.713 45.455 1.98 0.00 0.00 2.01
711 4982 2.556257 TCACTGCACTGCTTCGTTTAA 58.444 42.857 1.98 0.00 0.00 1.52
712 4983 2.232756 TCACTGCACTGCTTCGTTTA 57.767 45.000 1.98 0.00 0.00 2.01
713 4984 1.265095 CATCACTGCACTGCTTCGTTT 59.735 47.619 1.98 0.00 0.00 3.60
714 4985 0.870393 CATCACTGCACTGCTTCGTT 59.130 50.000 1.98 0.00 0.00 3.85
715 4986 0.033920 TCATCACTGCACTGCTTCGT 59.966 50.000 1.98 0.00 0.00 3.85
716 4987 1.150827 TTCATCACTGCACTGCTTCG 58.849 50.000 1.98 0.00 0.00 3.79
717 4988 2.663879 CGTTTCATCACTGCACTGCTTC 60.664 50.000 1.98 0.00 0.00 3.86
718 4989 1.265095 CGTTTCATCACTGCACTGCTT 59.735 47.619 1.98 0.00 0.00 3.91
719 4990 0.870393 CGTTTCATCACTGCACTGCT 59.130 50.000 1.98 0.00 0.00 4.24
720 4991 0.727122 GCGTTTCATCACTGCACTGC 60.727 55.000 0.00 0.00 0.00 4.40
721 4992 0.870393 AGCGTTTCATCACTGCACTG 59.130 50.000 0.00 0.00 0.00 3.66
722 4993 1.151668 GAGCGTTTCATCACTGCACT 58.848 50.000 0.00 0.00 0.00 4.40
723 4994 1.136141 CAGAGCGTTTCATCACTGCAC 60.136 52.381 0.00 0.00 0.00 4.57
724 4995 1.150827 CAGAGCGTTTCATCACTGCA 58.849 50.000 0.00 0.00 0.00 4.41
725 4996 1.136141 CACAGAGCGTTTCATCACTGC 60.136 52.381 0.00 0.00 0.00 4.40
726 4997 1.462283 CCACAGAGCGTTTCATCACTG 59.538 52.381 0.00 0.00 0.00 3.66
727 4998 1.800805 CCACAGAGCGTTTCATCACT 58.199 50.000 0.00 0.00 0.00 3.41
728 4999 0.166814 GCCACAGAGCGTTTCATCAC 59.833 55.000 0.00 0.00 0.00 3.06
729 5000 0.250252 TGCCACAGAGCGTTTCATCA 60.250 50.000 0.00 0.00 34.65 3.07
730 5001 0.874390 TTGCCACAGAGCGTTTCATC 59.126 50.000 0.00 0.00 34.65 2.92
731 5002 0.593128 GTTGCCACAGAGCGTTTCAT 59.407 50.000 0.00 0.00 34.65 2.57
732 5003 0.463654 AGTTGCCACAGAGCGTTTCA 60.464 50.000 0.00 0.00 34.65 2.69
733 5004 0.663153 AAGTTGCCACAGAGCGTTTC 59.337 50.000 0.00 0.00 34.65 2.78
734 5005 0.663153 GAAGTTGCCACAGAGCGTTT 59.337 50.000 0.00 0.00 34.65 3.60
735 5006 0.179045 AGAAGTTGCCACAGAGCGTT 60.179 50.000 0.00 0.00 34.65 4.84
736 5007 0.179045 AAGAAGTTGCCACAGAGCGT 60.179 50.000 0.00 0.00 34.65 5.07
737 5008 0.236711 CAAGAAGTTGCCACAGAGCG 59.763 55.000 0.00 0.00 34.65 5.03
738 5009 0.595095 CCAAGAAGTTGCCACAGAGC 59.405 55.000 0.00 0.00 31.64 4.09
739 5010 1.242076 CCCAAGAAGTTGCCACAGAG 58.758 55.000 0.00 0.00 31.64 3.35
740 5011 0.550914 ACCCAAGAAGTTGCCACAGA 59.449 50.000 0.00 0.00 31.64 3.41
741 5012 0.954452 GACCCAAGAAGTTGCCACAG 59.046 55.000 0.00 0.00 31.64 3.66
742 5013 0.817634 CGACCCAAGAAGTTGCCACA 60.818 55.000 0.00 0.00 31.64 4.17
743 5014 0.818040 ACGACCCAAGAAGTTGCCAC 60.818 55.000 0.00 0.00 31.64 5.01
744 5015 0.534203 GACGACCCAAGAAGTTGCCA 60.534 55.000 0.00 0.00 31.64 4.92
745 5016 0.534203 TGACGACCCAAGAAGTTGCC 60.534 55.000 0.00 0.00 31.64 4.52
746 5017 0.868406 CTGACGACCCAAGAAGTTGC 59.132 55.000 0.00 0.00 31.64 4.17
747 5018 2.135933 GACTGACGACCCAAGAAGTTG 58.864 52.381 0.00 0.00 0.00 3.16
748 5019 1.269621 CGACTGACGACCCAAGAAGTT 60.270 52.381 0.00 0.00 45.77 2.66
749 5020 0.314302 CGACTGACGACCCAAGAAGT 59.686 55.000 0.00 0.00 45.77 3.01
750 5021 0.314302 ACGACTGACGACCCAAGAAG 59.686 55.000 6.52 0.00 45.77 2.85
751 5022 0.313043 GACGACTGACGACCCAAGAA 59.687 55.000 6.52 0.00 45.77 2.52
752 5023 0.820482 TGACGACTGACGACCCAAGA 60.820 55.000 6.52 0.00 45.77 3.02
753 5024 0.663568 GTGACGACTGACGACCCAAG 60.664 60.000 6.52 0.00 45.77 3.61
754 5025 1.361271 GTGACGACTGACGACCCAA 59.639 57.895 6.52 0.00 45.77 4.12
755 5026 1.385756 TTGTGACGACTGACGACCCA 61.386 55.000 6.52 0.00 45.77 4.51
756 5027 0.938168 GTTGTGACGACTGACGACCC 60.938 60.000 6.52 0.00 45.77 4.46
757 5028 0.030369 AGTTGTGACGACTGACGACC 59.970 55.000 4.33 0.00 45.77 4.79
758 5029 1.779724 GAAGTTGTGACGACTGACGAC 59.220 52.381 6.19 0.52 45.77 4.34
759 5030 1.268896 GGAAGTTGTGACGACTGACGA 60.269 52.381 6.19 0.00 45.77 4.20
761 5032 1.859080 GTGGAAGTTGTGACGACTGAC 59.141 52.381 6.19 3.40 0.00 3.51
762 5033 1.202486 GGTGGAAGTTGTGACGACTGA 60.202 52.381 6.19 0.00 0.00 3.41
763 5034 1.202533 AGGTGGAAGTTGTGACGACTG 60.203 52.381 6.19 0.00 0.00 3.51
764 5035 1.120530 AGGTGGAAGTTGTGACGACT 58.879 50.000 0.00 0.00 0.00 4.18
765 5036 1.202486 TCAGGTGGAAGTTGTGACGAC 60.202 52.381 0.00 0.00 0.00 4.34
766 5037 1.116308 TCAGGTGGAAGTTGTGACGA 58.884 50.000 0.00 0.00 0.00 4.20
767 5038 1.800586 CATCAGGTGGAAGTTGTGACG 59.199 52.381 0.00 0.00 0.00 4.35
768 5039 3.070018 CTCATCAGGTGGAAGTTGTGAC 58.930 50.000 0.00 0.00 0.00 3.67
769 5040 2.705658 ACTCATCAGGTGGAAGTTGTGA 59.294 45.455 0.00 0.00 0.00 3.58
770 5041 3.070018 GACTCATCAGGTGGAAGTTGTG 58.930 50.000 0.00 0.00 0.00 3.33
771 5042 2.975489 AGACTCATCAGGTGGAAGTTGT 59.025 45.455 0.00 0.00 0.00 3.32
772 5043 3.692257 AGACTCATCAGGTGGAAGTTG 57.308 47.619 0.00 0.00 0.00 3.16
773 5044 3.648067 TGAAGACTCATCAGGTGGAAGTT 59.352 43.478 0.00 0.00 0.00 2.66
774 5045 3.242867 TGAAGACTCATCAGGTGGAAGT 58.757 45.455 0.00 0.00 0.00 3.01
775 5046 3.859443 CTGAAGACTCATCAGGTGGAAG 58.141 50.000 3.70 0.00 40.48 3.46
776 5047 3.969287 CTGAAGACTCATCAGGTGGAA 57.031 47.619 3.70 0.00 40.48 3.53
782 5053 1.998315 CAACGCCTGAAGACTCATCAG 59.002 52.381 4.55 4.55 43.15 2.90
783 5054 1.618343 TCAACGCCTGAAGACTCATCA 59.382 47.619 0.00 0.00 0.00 3.07
784 5055 2.370281 TCAACGCCTGAAGACTCATC 57.630 50.000 0.00 0.00 0.00 2.92
785 5056 2.839486 TTCAACGCCTGAAGACTCAT 57.161 45.000 0.00 0.00 39.20 2.90
793 5064 1.266718 GTTGCTCAATTCAACGCCTGA 59.733 47.619 0.00 0.00 35.14 3.86
794 5065 1.267806 AGTTGCTCAATTCAACGCCTG 59.732 47.619 3.61 0.00 46.06 4.85
795 5066 1.537202 GAGTTGCTCAATTCAACGCCT 59.463 47.619 3.61 0.00 46.06 5.52
796 5067 1.537202 AGAGTTGCTCAATTCAACGCC 59.463 47.619 8.09 3.55 46.06 5.68
797 5068 2.578495 CAGAGTTGCTCAATTCAACGC 58.422 47.619 7.66 4.69 46.06 4.84
798 5069 2.666619 GCCAGAGTTGCTCAATTCAACG 60.667 50.000 7.66 0.00 46.06 4.10
799 5070 2.666619 CGCCAGAGTTGCTCAATTCAAC 60.667 50.000 7.66 1.27 42.92 3.18
800 5071 1.536766 CGCCAGAGTTGCTCAATTCAA 59.463 47.619 7.66 0.00 32.06 2.69
801 5072 1.159285 CGCCAGAGTTGCTCAATTCA 58.841 50.000 7.66 0.00 32.06 2.57
802 5073 0.449388 CCGCCAGAGTTGCTCAATTC 59.551 55.000 0.00 0.00 32.06 2.17
803 5074 0.250901 ACCGCCAGAGTTGCTCAATT 60.251 50.000 0.00 0.00 32.06 2.32
804 5075 0.250901 AACCGCCAGAGTTGCTCAAT 60.251 50.000 0.00 0.00 32.06 2.57
805 5076 0.465460 AAACCGCCAGAGTTGCTCAA 60.465 50.000 0.00 0.00 32.06 3.02
806 5077 0.465460 AAAACCGCCAGAGTTGCTCA 60.465 50.000 0.00 0.00 32.06 4.26
807 5078 0.668535 AAAAACCGCCAGAGTTGCTC 59.331 50.000 0.00 0.00 0.00 4.26
808 5079 2.807247 AAAAACCGCCAGAGTTGCT 58.193 47.368 0.00 0.00 0.00 3.91
973 5245 1.298488 GATCGACGGAGAAGACGGC 60.298 63.158 0.00 0.00 35.62 5.68
1078 5350 4.594970 TCTTCCAAGTTCAACTGTTCCAA 58.405 39.130 0.00 0.00 0.00 3.53
1126 5398 5.530171 CGTTGATTTCAGGATCATCCTCATT 59.470 40.000 1.94 0.00 45.66 2.57
1183 5455 7.783119 TGTCTGGCTAAAGGACTTATCAGTATA 59.217 37.037 0.00 0.00 31.22 1.47
1191 5463 3.173965 AGCTGTCTGGCTAAAGGACTTA 58.826 45.455 0.00 0.00 41.16 2.24
1500 5772 3.326006 GCCTCATCTCCATAATCTCACCA 59.674 47.826 0.00 0.00 0.00 4.17
1510 5782 5.393068 TTTCCATTAAGCCTCATCTCCAT 57.607 39.130 0.00 0.00 0.00 3.41
1892 6164 0.748729 ACGGCCAGTTTTTGACGGAA 60.749 50.000 2.24 0.00 33.28 4.30
1917 6189 2.828868 GCCGGATCCACCTGCATA 59.171 61.111 13.41 0.00 45.99 3.14
2141 6413 4.776322 CTCATTGTGCCCGGCGGA 62.776 66.667 30.79 7.23 0.00 5.54
2574 8587 2.042433 CCCCCACAAAACCCTTCATCTA 59.958 50.000 0.00 0.00 0.00 1.98
2654 8667 5.107220 CCGTACACAAGTATCCAAAACTGTC 60.107 44.000 0.00 0.00 31.84 3.51
2667 8680 4.688879 CACATCAATGTACCGTACACAAGT 59.311 41.667 13.60 6.02 42.23 3.16
2674 8687 2.943449 TCGCACATCAATGTACCGTA 57.057 45.000 12.22 1.95 39.39 4.02
2693 8706 3.965379 TCATTTGCTGCATCCACAATT 57.035 38.095 1.84 0.00 0.00 2.32
2750 8763 2.636830 CGATGCCAATTCTCCACTCTT 58.363 47.619 0.00 0.00 0.00 2.85
2763 8776 2.825387 GCTCCACATGCGATGCCA 60.825 61.111 0.00 0.00 0.00 4.92
2880 8893 5.163426 ACACTTGCATTTGATTTTCAGACCA 60.163 36.000 2.21 0.00 0.00 4.02
2987 9000 1.738030 CGAACCCGTACATTCCTCACC 60.738 57.143 0.00 0.00 0.00 4.02
3062 9075 2.591715 GTCGCAAGGTGCACCACT 60.592 61.111 36.39 20.99 45.36 4.00
3107 9121 1.270678 GGTGCTGAAAGTAACCGGACT 60.271 52.381 9.46 0.00 34.04 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.