Multiple sequence alignment - TraesCS7A01G534200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G534200 chr7A 100.000 5822 0 0 1 5822 712351700 712345879 0.000000e+00 10752.0
1 TraesCS7A01G534200 chr7A 93.464 612 40 0 3 614 708746708 708747319 0.000000e+00 909.0
2 TraesCS7A01G534200 chr7D 90.881 3509 257 26 876 4363 618712638 618709172 0.000000e+00 4649.0
3 TraesCS7A01G534200 chr7D 90.851 623 45 6 4348 4967 618709000 618708387 0.000000e+00 824.0
4 TraesCS7A01G534200 chr7D 87.022 601 48 21 4974 5573 618708227 618707656 0.000000e+00 651.0
5 TraesCS7A01G534200 chr7D 92.000 250 15 4 5576 5822 618704370 618704123 4.320000e-91 346.0
6 TraesCS7A01G534200 chr7D 97.368 38 1 0 696 733 618712748 618712711 1.350000e-06 65.8
7 TraesCS7A01G534200 chr7B 90.446 2041 138 28 1038 3060 713202632 713200631 0.000000e+00 2636.0
8 TraesCS7A01G534200 chr7B 88.421 1330 119 20 3059 4368 713200471 713199157 0.000000e+00 1570.0
9 TraesCS7A01G534200 chr7B 92.799 611 44 0 3 613 444168535 444169145 0.000000e+00 885.0
10 TraesCS7A01G534200 chr7B 90.221 634 41 11 4348 4970 713198988 713198365 0.000000e+00 808.0
11 TraesCS7A01G534200 chr7B 90.979 388 26 6 5438 5822 713189850 713189469 1.120000e-141 514.0
12 TraesCS7A01G534200 chr7B 84.335 466 40 18 4974 5437 713198212 713197778 5.390000e-115 425.0
13 TraesCS7A01G534200 chr3A 95.440 614 24 2 3 614 746439688 746439077 0.000000e+00 976.0
14 TraesCS7A01G534200 chr2B 94.935 612 31 0 3 614 535024882 535024271 0.000000e+00 959.0
15 TraesCS7A01G534200 chr6B 94.599 611 33 0 5 615 31275200 31274590 0.000000e+00 946.0
16 TraesCS7A01G534200 chr6B 93.195 529 35 1 4 531 27014175 27014703 0.000000e+00 776.0
17 TraesCS7A01G534200 chr5A 94.444 612 33 1 3 614 523177227 523177837 0.000000e+00 941.0
18 TraesCS7A01G534200 chrUn 93.384 529 34 1 4 531 210686774 210686246 0.000000e+00 782.0
19 TraesCS7A01G534200 chr2D 89.706 612 61 2 3 613 119980380 119979770 0.000000e+00 780.0
20 TraesCS7A01G534200 chr5D 73.176 466 85 28 1333 1779 55049561 55049117 1.320000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G534200 chr7A 712345879 712351700 5821 True 10752.00 10752 100.00000 1 5822 1 chr7A.!!$R1 5821
1 TraesCS7A01G534200 chr7A 708746708 708747319 611 False 909.00 909 93.46400 3 614 1 chr7A.!!$F1 611
2 TraesCS7A01G534200 chr7D 618704123 618712748 8625 True 1307.16 4649 91.62440 696 5822 5 chr7D.!!$R1 5126
3 TraesCS7A01G534200 chr7B 713197778 713202632 4854 True 1359.75 2636 88.35575 1038 5437 4 chr7B.!!$R2 4399
4 TraesCS7A01G534200 chr7B 444168535 444169145 610 False 885.00 885 92.79900 3 613 1 chr7B.!!$F1 610
5 TraesCS7A01G534200 chr3A 746439077 746439688 611 True 976.00 976 95.44000 3 614 1 chr3A.!!$R1 611
6 TraesCS7A01G534200 chr2B 535024271 535024882 611 True 959.00 959 94.93500 3 614 1 chr2B.!!$R1 611
7 TraesCS7A01G534200 chr6B 31274590 31275200 610 True 946.00 946 94.59900 5 615 1 chr6B.!!$R1 610
8 TraesCS7A01G534200 chr6B 27014175 27014703 528 False 776.00 776 93.19500 4 531 1 chr6B.!!$F1 527
9 TraesCS7A01G534200 chr5A 523177227 523177837 610 False 941.00 941 94.44400 3 614 1 chr5A.!!$F1 611
10 TraesCS7A01G534200 chrUn 210686246 210686774 528 True 782.00 782 93.38400 4 531 1 chrUn.!!$R1 527
11 TraesCS7A01G534200 chr2D 119979770 119980380 610 True 780.00 780 89.70600 3 613 1 chr2D.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 798 0.032267 CCGTTCCTCCTAGAATCCGC 59.968 60.0 0.0 0.0 0.00 5.54 F
796 799 0.032267 CGTTCCTCCTAGAATCCGCC 59.968 60.0 0.0 0.0 0.00 6.13 F
810 813 0.320421 TCCGCCTCAGTAGCAACAAC 60.320 55.0 0.0 0.0 0.00 3.32 F
1629 1647 0.529378 GAAGGACAGGGCAGCAAATG 59.471 55.0 0.0 0.0 0.00 2.32 F
3271 3464 0.250640 CCTGCACTCTGCCTTCTGTT 60.251 55.0 0.0 0.0 44.23 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 2565 0.172578 CGAACATGACGGCTCAGGTA 59.827 55.000 0.0 0.0 40.55 3.08 R
2727 2753 1.208776 TCCTCATCATCCTGCACACAG 59.791 52.381 0.0 0.0 44.05 3.66 R
2871 2897 2.646250 ACACAATTTACGCAAACGAGC 58.354 42.857 0.0 0.0 43.93 5.03 R
3282 3475 0.331616 ACCAACTGTCATTAGGGGCC 59.668 55.000 0.0 0.0 0.00 5.80 R
5303 5865 0.538287 AAGACCAAGCAAGACCAGCC 60.538 55.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
281 282 2.169832 GCTGCGGCTATATTGGAAGA 57.830 50.000 11.21 0.00 35.22 2.87
374 375 3.152341 CACTCAAACTGAATGGAGGCTT 58.848 45.455 0.00 0.00 0.00 4.35
426 427 3.842732 TGTCGCAGTTATCTCGAAGAA 57.157 42.857 0.00 0.00 34.09 2.52
452 453 8.780846 TTCGGAAAGTTTACTATTGAGCATTA 57.219 30.769 0.00 0.00 0.00 1.90
517 518 2.993899 GGTCGTGCTAATAATCCATCCG 59.006 50.000 0.00 0.00 0.00 4.18
560 561 8.088365 GCCTGGTTTCATTGTAAATCTTTTAGT 58.912 33.333 0.00 0.00 0.00 2.24
632 635 3.720949 AAAAACGAAAACCTACCCTGC 57.279 42.857 0.00 0.00 0.00 4.85
633 636 1.612676 AAACGAAAACCTACCCTGCC 58.387 50.000 0.00 0.00 0.00 4.85
634 637 0.604511 AACGAAAACCTACCCTGCCG 60.605 55.000 0.00 0.00 0.00 5.69
635 638 1.743995 CGAAAACCTACCCTGCCGG 60.744 63.158 0.00 0.00 37.81 6.13
636 639 2.035155 AAAACCTACCCTGCCGGC 59.965 61.111 22.73 22.73 33.26 6.13
637 640 3.578968 AAAACCTACCCTGCCGGCC 62.579 63.158 26.77 6.44 33.26 6.13
662 665 4.101448 CCCTGCCCGTCCTTCCAG 62.101 72.222 0.00 0.00 0.00 3.86
663 666 3.003173 CCTGCCCGTCCTTCCAGA 61.003 66.667 0.00 0.00 0.00 3.86
664 667 2.592993 CCTGCCCGTCCTTCCAGAA 61.593 63.158 0.00 0.00 0.00 3.02
665 668 1.376037 CTGCCCGTCCTTCCAGAAC 60.376 63.158 0.00 0.00 0.00 3.01
666 669 1.831652 CTGCCCGTCCTTCCAGAACT 61.832 60.000 0.00 0.00 0.00 3.01
667 670 1.376037 GCCCGTCCTTCCAGAACTG 60.376 63.158 0.00 0.00 0.00 3.16
668 671 1.376037 CCCGTCCTTCCAGAACTGC 60.376 63.158 0.00 0.00 0.00 4.40
669 672 1.376037 CCGTCCTTCCAGAACTGCC 60.376 63.158 0.00 0.00 0.00 4.85
670 673 1.738099 CGTCCTTCCAGAACTGCCG 60.738 63.158 0.00 0.00 0.00 5.69
671 674 1.371558 GTCCTTCCAGAACTGCCGT 59.628 57.895 0.00 0.00 0.00 5.68
672 675 0.250338 GTCCTTCCAGAACTGCCGTT 60.250 55.000 0.00 0.00 35.68 4.44
679 682 3.110178 GAACTGCCGTTCCGTCCG 61.110 66.667 9.67 0.00 42.93 4.79
728 731 1.304713 CATTGCTTCCCCTGCAGGT 60.305 57.895 30.63 7.24 41.71 4.00
736 739 4.974721 CCCTGCAGGTGGCCGTTT 62.975 66.667 30.63 0.00 43.89 3.60
737 740 2.912025 CCTGCAGGTGGCCGTTTT 60.912 61.111 25.53 0.00 43.89 2.43
738 741 2.336088 CTGCAGGTGGCCGTTTTG 59.664 61.111 5.57 0.00 43.89 2.44
739 742 3.846602 CTGCAGGTGGCCGTTTTGC 62.847 63.158 5.57 12.71 43.89 3.68
740 743 3.605664 GCAGGTGGCCGTTTTGCT 61.606 61.111 12.43 0.00 36.11 3.91
741 744 3.128375 CAGGTGGCCGTTTTGCTT 58.872 55.556 0.00 0.00 0.00 3.91
742 745 1.300080 CAGGTGGCCGTTTTGCTTG 60.300 57.895 0.00 0.00 0.00 4.01
743 746 2.661537 GGTGGCCGTTTTGCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
744 747 2.661537 GTGGCCGTTTTGCTTGCC 60.662 61.111 0.00 0.00 44.27 4.52
749 752 3.977244 CGTTTTGCTTGCCGCCCT 61.977 61.111 0.00 0.00 38.05 5.19
750 753 2.421314 GTTTTGCTTGCCGCCCTT 59.579 55.556 0.00 0.00 38.05 3.95
751 754 1.227527 GTTTTGCTTGCCGCCCTTT 60.228 52.632 0.00 0.00 38.05 3.11
752 755 1.068921 TTTTGCTTGCCGCCCTTTC 59.931 52.632 0.00 0.00 38.05 2.62
753 756 2.691674 TTTTGCTTGCCGCCCTTTCG 62.692 55.000 0.00 0.00 38.05 3.46
754 757 4.634703 TGCTTGCCGCCCTTTCGA 62.635 61.111 0.00 0.00 38.05 3.71
755 758 3.804193 GCTTGCCGCCCTTTCGAG 61.804 66.667 0.00 0.00 0.00 4.04
756 759 2.047274 CTTGCCGCCCTTTCGAGA 60.047 61.111 0.00 0.00 0.00 4.04
757 760 2.358247 TTGCCGCCCTTTCGAGAC 60.358 61.111 0.00 0.00 0.00 3.36
758 761 4.735132 TGCCGCCCTTTCGAGACG 62.735 66.667 0.00 0.00 0.00 4.18
763 766 4.735132 CCCTTTCGAGACGCCGCA 62.735 66.667 0.00 0.00 0.00 5.69
782 785 2.211468 ATCCCCTTCCTTGCCGTTCC 62.211 60.000 0.00 0.00 0.00 3.62
789 792 0.040646 TCCTTGCCGTTCCTCCTAGA 59.959 55.000 0.00 0.00 0.00 2.43
790 793 0.902531 CCTTGCCGTTCCTCCTAGAA 59.097 55.000 0.00 0.00 0.00 2.10
791 794 1.486726 CCTTGCCGTTCCTCCTAGAAT 59.513 52.381 0.00 0.00 0.00 2.40
792 795 2.483889 CCTTGCCGTTCCTCCTAGAATC 60.484 54.545 0.00 0.00 0.00 2.52
793 796 1.120530 TGCCGTTCCTCCTAGAATCC 58.879 55.000 0.00 0.00 0.00 3.01
795 798 0.032267 CCGTTCCTCCTAGAATCCGC 59.968 60.000 0.00 0.00 0.00 5.54
796 799 0.032267 CGTTCCTCCTAGAATCCGCC 59.968 60.000 0.00 0.00 0.00 6.13
797 800 1.415200 GTTCCTCCTAGAATCCGCCT 58.585 55.000 0.00 0.00 0.00 5.52
798 801 1.341852 GTTCCTCCTAGAATCCGCCTC 59.658 57.143 0.00 0.00 0.00 4.70
799 802 0.556258 TCCTCCTAGAATCCGCCTCA 59.444 55.000 0.00 0.00 0.00 3.86
800 803 0.965439 CCTCCTAGAATCCGCCTCAG 59.035 60.000 0.00 0.00 0.00 3.35
801 804 1.698506 CTCCTAGAATCCGCCTCAGT 58.301 55.000 0.00 0.00 0.00 3.41
802 805 2.489255 CCTCCTAGAATCCGCCTCAGTA 60.489 54.545 0.00 0.00 0.00 2.74
803 806 2.817258 CTCCTAGAATCCGCCTCAGTAG 59.183 54.545 0.00 0.00 0.00 2.57
804 807 1.271102 CCTAGAATCCGCCTCAGTAGC 59.729 57.143 0.00 0.00 0.00 3.58
805 808 1.957177 CTAGAATCCGCCTCAGTAGCA 59.043 52.381 0.00 0.00 0.00 3.49
806 809 1.195115 AGAATCCGCCTCAGTAGCAA 58.805 50.000 0.00 0.00 0.00 3.91
807 810 1.134670 AGAATCCGCCTCAGTAGCAAC 60.135 52.381 0.00 0.00 0.00 4.17
808 811 0.613260 AATCCGCCTCAGTAGCAACA 59.387 50.000 0.00 0.00 0.00 3.33
809 812 0.613260 ATCCGCCTCAGTAGCAACAA 59.387 50.000 0.00 0.00 0.00 2.83
810 813 0.320421 TCCGCCTCAGTAGCAACAAC 60.320 55.000 0.00 0.00 0.00 3.32
812 815 0.792640 CGCCTCAGTAGCAACAACAG 59.207 55.000 0.00 0.00 0.00 3.16
813 816 1.605457 CGCCTCAGTAGCAACAACAGA 60.605 52.381 0.00 0.00 0.00 3.41
814 817 2.072298 GCCTCAGTAGCAACAACAGAG 58.928 52.381 0.00 0.00 0.00 3.35
816 819 2.037772 CCTCAGTAGCAACAACAGAGGT 59.962 50.000 6.53 0.00 37.11 3.85
817 820 3.258372 CCTCAGTAGCAACAACAGAGGTA 59.742 47.826 6.53 0.00 37.11 3.08
818 821 4.081420 CCTCAGTAGCAACAACAGAGGTAT 60.081 45.833 6.53 0.00 37.11 2.73
819 822 5.073311 TCAGTAGCAACAACAGAGGTATC 57.927 43.478 0.00 0.00 0.00 2.24
822 825 3.618690 AGCAACAACAGAGGTATCTCC 57.381 47.619 0.00 0.00 40.83 3.71
823 826 2.237392 AGCAACAACAGAGGTATCTCCC 59.763 50.000 0.00 0.00 40.83 4.30
824 827 2.027192 GCAACAACAGAGGTATCTCCCA 60.027 50.000 0.00 0.00 40.83 4.37
825 828 3.559171 GCAACAACAGAGGTATCTCCCAA 60.559 47.826 0.00 0.00 40.83 4.12
826 829 4.848357 CAACAACAGAGGTATCTCCCAAT 58.152 43.478 0.00 0.00 40.83 3.16
827 830 5.256474 CAACAACAGAGGTATCTCCCAATT 58.744 41.667 0.00 0.00 40.83 2.32
829 832 4.080299 ACAACAGAGGTATCTCCCAATTCC 60.080 45.833 0.00 0.00 40.83 3.01
830 833 3.049344 ACAGAGGTATCTCCCAATTCCC 58.951 50.000 0.00 0.00 40.83 3.97
831 834 3.048600 CAGAGGTATCTCCCAATTCCCA 58.951 50.000 0.00 0.00 40.83 4.37
832 835 3.459598 CAGAGGTATCTCCCAATTCCCAA 59.540 47.826 0.00 0.00 40.83 4.12
833 836 4.079787 CAGAGGTATCTCCCAATTCCCAAA 60.080 45.833 0.00 0.00 40.83 3.28
834 837 4.733988 AGAGGTATCTCCCAATTCCCAAAT 59.266 41.667 0.00 0.00 40.83 2.32
835 838 5.066913 AGGTATCTCCCAATTCCCAAATC 57.933 43.478 0.00 0.00 36.75 2.17
836 839 4.140924 AGGTATCTCCCAATTCCCAAATCC 60.141 45.833 0.00 0.00 36.75 3.01
837 840 4.140924 GGTATCTCCCAATTCCCAAATCCT 60.141 45.833 0.00 0.00 0.00 3.24
838 841 5.074515 GGTATCTCCCAATTCCCAAATCCTA 59.925 44.000 0.00 0.00 0.00 2.94
839 842 5.749422 ATCTCCCAATTCCCAAATCCTAA 57.251 39.130 0.00 0.00 0.00 2.69
840 843 5.749422 TCTCCCAATTCCCAAATCCTAAT 57.251 39.130 0.00 0.00 0.00 1.73
841 844 6.103838 TCTCCCAATTCCCAAATCCTAATT 57.896 37.500 0.00 0.00 0.00 1.40
842 845 6.511208 TCTCCCAATTCCCAAATCCTAATTT 58.489 36.000 0.00 0.00 35.43 1.82
843 846 6.611236 TCTCCCAATTCCCAAATCCTAATTTC 59.389 38.462 0.00 0.00 32.69 2.17
844 847 6.511208 TCCCAATTCCCAAATCCTAATTTCT 58.489 36.000 0.00 0.00 32.69 2.52
845 848 6.611236 TCCCAATTCCCAAATCCTAATTTCTC 59.389 38.462 0.00 0.00 32.69 2.87
846 849 6.612863 CCCAATTCCCAAATCCTAATTTCTCT 59.387 38.462 0.00 0.00 32.69 3.10
847 850 7.126268 CCCAATTCCCAAATCCTAATTTCTCTT 59.874 37.037 0.00 0.00 32.69 2.85
848 851 7.983484 CCAATTCCCAAATCCTAATTTCTCTTG 59.017 37.037 0.00 0.00 32.69 3.02
849 852 7.666063 ATTCCCAAATCCTAATTTCTCTTGG 57.334 36.000 0.00 0.00 32.69 3.61
850 853 6.152638 TCCCAAATCCTAATTTCTCTTGGT 57.847 37.500 0.00 0.00 32.69 3.67
851 854 7.278724 TCCCAAATCCTAATTTCTCTTGGTA 57.721 36.000 0.00 0.00 32.69 3.25
852 855 7.346471 TCCCAAATCCTAATTTCTCTTGGTAG 58.654 38.462 0.00 0.00 32.69 3.18
853 856 6.039829 CCCAAATCCTAATTTCTCTTGGTAGC 59.960 42.308 0.00 0.00 32.69 3.58
854 857 6.603201 CCAAATCCTAATTTCTCTTGGTAGCA 59.397 38.462 0.00 0.00 32.69 3.49
855 858 7.122650 CCAAATCCTAATTTCTCTTGGTAGCAA 59.877 37.037 7.22 7.22 32.69 3.91
856 859 8.522830 CAAATCCTAATTTCTCTTGGTAGCAAA 58.477 33.333 8.94 0.00 32.69 3.68
857 860 8.650143 AATCCTAATTTCTCTTGGTAGCAAAA 57.350 30.769 8.94 0.39 0.00 2.44
858 861 8.650143 ATCCTAATTTCTCTTGGTAGCAAAAA 57.350 30.769 8.94 7.09 0.00 1.94
890 893 3.829886 ACGCCATTGTGTGATACTTTG 57.170 42.857 0.00 0.00 32.92 2.77
893 896 5.182487 ACGCCATTGTGTGATACTTTGATA 58.818 37.500 0.00 0.00 32.92 2.15
900 903 7.667043 TTGTGTGATACTTTGATACCTTGAC 57.333 36.000 0.00 0.00 0.00 3.18
917 920 5.995282 ACCTTGACTGAATCATTGAAACGTA 59.005 36.000 0.00 0.00 37.11 3.57
921 924 7.072177 TGACTGAATCATTGAAACGTAATCC 57.928 36.000 0.00 0.00 29.99 3.01
922 925 6.878923 TGACTGAATCATTGAAACGTAATCCT 59.121 34.615 0.00 0.00 29.99 3.24
937 940 5.233689 ACGTAATCCTTAGTTCTTAATGCGC 59.766 40.000 0.00 0.00 0.00 6.09
950 953 4.100963 TCTTAATGCGCTCCTCTTTCCATA 59.899 41.667 9.73 0.00 0.00 2.74
954 957 2.092968 TGCGCTCCTCTTTCCATATTGT 60.093 45.455 9.73 0.00 0.00 2.71
959 962 5.189180 GCTCCTCTTTCCATATTGTCAGTT 58.811 41.667 0.00 0.00 0.00 3.16
977 980 5.915196 GTCAGTTTTGTAATTCTGCACTTCC 59.085 40.000 0.00 0.00 0.00 3.46
982 985 6.811253 TTTGTAATTCTGCACTTCCGTAAT 57.189 33.333 0.00 0.00 0.00 1.89
990 993 4.213270 TCTGCACTTCCGTAATTGTTGAAG 59.787 41.667 9.71 9.71 39.99 3.02
996 999 1.472480 CCGTAATTGTTGAAGCCAGGG 59.528 52.381 0.00 0.00 0.00 4.45
1007 1010 0.779997 AAGCCAGGGAACATGGAAGT 59.220 50.000 3.87 0.00 40.51 3.01
1027 1030 2.256461 GCACCGGCAAGCTTCAAG 59.744 61.111 0.00 0.00 40.72 3.02
1033 1036 1.131883 CCGGCAAGCTTCAAGATCTTG 59.868 52.381 26.56 26.56 41.71 3.02
1047 1050 6.634805 TCAAGATCTTGACATAACCTCAGAC 58.365 40.000 30.05 0.00 43.90 3.51
1052 1055 6.358974 TCTTGACATAACCTCAGACATGAA 57.641 37.500 0.00 0.00 34.23 2.57
1054 1057 4.494484 TGACATAACCTCAGACATGAACG 58.506 43.478 0.00 0.00 34.23 3.95
1061 1064 2.996621 CCTCAGACATGAACGGAAAGAC 59.003 50.000 0.00 0.00 34.23 3.01
1064 1067 1.616865 AGACATGAACGGAAAGACGGA 59.383 47.619 0.00 0.00 38.39 4.69
1072 1075 2.165301 GGAAAGACGGACGATGGCG 61.165 63.158 0.00 0.00 44.79 5.69
1157 1163 2.509964 AGGAATTGGAGCCCGAAGTAAT 59.490 45.455 0.00 0.00 0.00 1.89
1158 1164 2.618709 GGAATTGGAGCCCGAAGTAATG 59.381 50.000 0.00 0.00 0.00 1.90
1190 1196 1.394618 CGGAAACCAAAGGAACCACA 58.605 50.000 0.00 0.00 0.00 4.17
1192 1198 2.480587 CGGAAACCAAAGGAACCACAAC 60.481 50.000 0.00 0.00 0.00 3.32
1197 1203 2.758423 ACCAAAGGAACCACAACACTTC 59.242 45.455 0.00 0.00 0.00 3.01
1215 1221 3.657727 ACTTCCATTCTCTTCTTCCCCAA 59.342 43.478 0.00 0.00 0.00 4.12
1221 1227 5.514834 CCATTCTCTTCTTCCCCAACACTTA 60.515 44.000 0.00 0.00 0.00 2.24
1255 1261 4.922026 GTGCCCCGGTGTGTTCGT 62.922 66.667 0.00 0.00 0.00 3.85
1260 1266 1.661480 CCCGGTGTGTTCGTCTACA 59.339 57.895 0.00 0.00 0.00 2.74
1286 1292 1.442769 CTTCACATGTGCCTTACGCT 58.557 50.000 21.38 0.00 38.78 5.07
1295 1301 1.745115 GCCTTACGCTGTGATGCCA 60.745 57.895 0.00 0.00 0.00 4.92
1303 1309 1.200716 CGCTGTGATGCCATTTGAACT 59.799 47.619 0.00 0.00 0.00 3.01
1307 1313 4.624015 CTGTGATGCCATTTGAACTGTTT 58.376 39.130 0.00 0.00 0.00 2.83
1336 1346 8.836268 AATTGTGAGAAACATATTGCATTGTT 57.164 26.923 4.80 4.80 38.99 2.83
1442 1453 4.881920 GCAGGTTTGCTTCATTCCTAAAA 58.118 39.130 0.00 0.00 46.95 1.52
1457 1468 6.916360 TTCCTAAAACTTAACTCTACCCGA 57.084 37.500 0.00 0.00 0.00 5.14
1480 1494 4.693283 TCGTTTATGTCTAGGATTGCCAG 58.307 43.478 0.00 0.00 36.29 4.85
1481 1495 4.161565 TCGTTTATGTCTAGGATTGCCAGT 59.838 41.667 0.00 0.00 36.29 4.00
1498 1516 3.243267 GCCAGTAAAATTTGGTCACACGT 60.243 43.478 0.00 0.00 36.81 4.49
1499 1517 4.286910 CCAGTAAAATTTGGTCACACGTG 58.713 43.478 15.48 15.48 0.00 4.49
1500 1518 4.201970 CCAGTAAAATTTGGTCACACGTGT 60.202 41.667 17.22 17.22 0.00 4.49
1511 1529 3.259064 GTCACACGTGTTGCAGGTATAT 58.741 45.455 20.79 0.00 31.07 0.86
1526 1544 2.371841 GGTATATGTGCCAGATGGGTGA 59.628 50.000 0.12 0.00 39.65 4.02
1571 1589 4.616802 GCATTCTTTGTGTTTATGTGTCCG 59.383 41.667 0.00 0.00 0.00 4.79
1592 1610 3.181517 CGTCCATGTCATGCTTACAACTG 60.182 47.826 7.35 0.00 0.00 3.16
1629 1647 0.529378 GAAGGACAGGGCAGCAAATG 59.471 55.000 0.00 0.00 0.00 2.32
1651 1669 2.750141 AGAAGGAGGTATCGGTAGCA 57.250 50.000 7.77 0.00 0.00 3.49
1652 1670 3.246416 AGAAGGAGGTATCGGTAGCAT 57.754 47.619 7.77 0.00 0.00 3.79
1653 1671 4.383931 AGAAGGAGGTATCGGTAGCATA 57.616 45.455 7.77 0.00 0.00 3.14
1654 1672 4.936802 AGAAGGAGGTATCGGTAGCATAT 58.063 43.478 7.77 0.00 0.00 1.78
1680 1698 5.853936 AGCTGTTGATTGTCTAGTGTGTTA 58.146 37.500 0.00 0.00 0.00 2.41
1711 1729 7.756395 AGTTTCACATTTCTTGTCATGATCT 57.244 32.000 0.00 0.00 36.00 2.75
1713 1731 6.748333 TTCACATTTCTTGTCATGATCTCC 57.252 37.500 0.00 0.00 36.00 3.71
1758 1776 1.673665 GGTCTTCAGGTGCCAGCTG 60.674 63.158 17.60 17.60 44.57 4.24
1834 1852 4.520492 CACAATGTTCAGGAGGTAGCTTTT 59.480 41.667 0.00 0.00 0.00 2.27
1835 1853 5.010012 CACAATGTTCAGGAGGTAGCTTTTT 59.990 40.000 0.00 0.00 0.00 1.94
1884 1907 2.555757 GTTGAGCTGCAATTCTCCTTGT 59.444 45.455 1.02 0.00 39.03 3.16
1999 2023 6.540914 ACAACTTCGTCTCCAAAATTCACTAA 59.459 34.615 0.00 0.00 0.00 2.24
2051 2075 0.743688 TGCACCGATTTGCTTGTGTT 59.256 45.000 5.42 0.00 43.41 3.32
2064 2088 4.825422 TGCTTGTGTTTTTGAATTGGTGA 58.175 34.783 0.00 0.00 0.00 4.02
2066 2090 5.879223 TGCTTGTGTTTTTGAATTGGTGAAT 59.121 32.000 0.00 0.00 0.00 2.57
2089 2113 4.588899 TGTATGTTAAGCAAGGCACTGAT 58.411 39.130 0.00 0.00 40.86 2.90
2092 2116 3.485394 TGTTAAGCAAGGCACTGATTCA 58.515 40.909 0.00 0.00 40.86 2.57
2101 2125 6.377996 AGCAAGGCACTGATTCATGTATTTTA 59.622 34.615 0.00 0.00 40.86 1.52
2211 2235 3.997021 GCAAAGCAAGCTACTGTTCTAGA 59.003 43.478 0.00 0.00 0.00 2.43
2295 2319 7.220030 TCCTGCTTGAATACTGAAATATCTCC 58.780 38.462 0.00 0.00 0.00 3.71
2310 2334 5.640158 ATATCTCCGTTTTGGTGGGAATA 57.360 39.130 0.00 0.00 39.52 1.75
2311 2335 3.791953 TCTCCGTTTTGGTGGGAATAA 57.208 42.857 0.00 0.00 39.52 1.40
2312 2336 4.310022 TCTCCGTTTTGGTGGGAATAAT 57.690 40.909 0.00 0.00 39.52 1.28
2356 2380 2.397751 GCATTGGCACGCTAGTCAT 58.602 52.632 0.93 0.00 40.72 3.06
2362 2386 1.482182 TGGCACGCTAGTCATGAGAAT 59.518 47.619 0.00 0.00 0.00 2.40
2482 2508 2.554893 TCCCTTGTAATTTGTTGCCGTC 59.445 45.455 0.00 0.00 0.00 4.79
2490 2516 1.873698 TTTGTTGCCGTCTGGACTAC 58.126 50.000 0.00 0.00 37.49 2.73
2530 2556 1.582968 CATGGCCTGAATATGCGGC 59.417 57.895 3.32 7.76 43.03 6.53
2539 2565 1.270785 TGAATATGCGGCGGATCATGT 60.271 47.619 19.45 3.06 0.00 3.21
2578 2604 7.928103 TGTTCGACTAGTTCTATCAAGGATAC 58.072 38.462 0.00 0.00 0.00 2.24
2621 2647 2.102252 AGGAGAAGTCGAATCAGATGCC 59.898 50.000 0.00 0.00 0.00 4.40
2660 2686 4.349365 TGGACCAGTTTGAGGTTTTCTTT 58.651 39.130 0.00 0.00 40.09 2.52
2666 2692 5.163561 CCAGTTTGAGGTTTTCTTTGTGCTA 60.164 40.000 0.00 0.00 0.00 3.49
2679 2705 3.855255 TTGTGCTATGGCCTATGCTTA 57.145 42.857 3.32 0.00 37.74 3.09
2871 2897 6.861572 TGTTTGAGTGTGAATAAGTCTAGACG 59.138 38.462 17.07 0.00 36.20 4.18
2872 2898 4.982999 TGAGTGTGAATAAGTCTAGACGC 58.017 43.478 17.07 6.53 36.20 5.19
2901 2927 5.044558 TGCGTAAATTGTGTTTTCCCTTTC 58.955 37.500 0.00 0.00 0.00 2.62
2952 2978 3.853831 TTTGTGCCATGACTGCTATTG 57.146 42.857 0.00 0.00 0.00 1.90
2953 2979 1.753930 TGTGCCATGACTGCTATTGG 58.246 50.000 0.00 0.00 0.00 3.16
2964 2990 2.947652 ACTGCTATTGGACATGATGCAC 59.052 45.455 0.00 0.00 0.00 4.57
2971 2997 1.065926 TGGACATGATGCACTGTCTCC 60.066 52.381 19.49 9.36 41.21 3.71
2997 3023 5.179452 ACACTGAAGCAAACTATATGGGT 57.821 39.130 0.00 0.00 0.00 4.51
3014 3040 1.418637 GGGTACTGGTGTTCTGGTCAA 59.581 52.381 0.00 0.00 0.00 3.18
3019 3045 4.431416 ACTGGTGTTCTGGTCAACATTA 57.569 40.909 0.00 0.00 38.53 1.90
3057 3083 9.462606 ACCTTCTGGTTATTGTTTATTCTAAGG 57.537 33.333 0.00 0.00 46.05 2.69
3079 3266 2.289694 ACATGACTAGGTGTTGGTCTGC 60.290 50.000 0.00 0.00 38.08 4.26
3091 3278 1.077212 GGTCTGCTGATGTGGGCAT 60.077 57.895 0.00 0.00 37.83 4.40
3105 3292 1.004161 TGGGCATTTGATCGACCTTCA 59.996 47.619 0.00 0.00 0.00 3.02
3167 3359 4.098349 TCCTATACAACGTTGCGTCCTATT 59.902 41.667 27.61 8.53 39.99 1.73
3170 3362 0.368907 CAACGTTGCGTCCTATTCCG 59.631 55.000 16.51 0.00 39.99 4.30
3187 3379 3.416119 TCCGCTCTACATTGTAACGAG 57.584 47.619 12.52 10.38 0.00 4.18
3209 3402 5.519722 AGTCATGATTTTTGGTCGTCAAAC 58.480 37.500 0.00 0.00 44.20 2.93
3218 3411 3.342627 TCGTCAAACGGCCTTGCG 61.343 61.111 0.00 8.05 42.81 4.85
3249 3442 1.219664 GCCATGCCGTACACAGGTA 59.780 57.895 0.00 0.00 0.00 3.08
3266 3459 0.610687 GTAGTCCTGCACTCTGCCTT 59.389 55.000 0.00 0.00 44.23 4.35
3267 3460 0.898320 TAGTCCTGCACTCTGCCTTC 59.102 55.000 0.00 0.00 44.23 3.46
3271 3464 0.250640 CCTGCACTCTGCCTTCTGTT 60.251 55.000 0.00 0.00 44.23 3.16
3275 3468 1.002544 GCACTCTGCCTTCTGTTACCT 59.997 52.381 0.00 0.00 37.42 3.08
3276 3469 2.233922 GCACTCTGCCTTCTGTTACCTA 59.766 50.000 0.00 0.00 37.42 3.08
3282 3475 6.127310 ACTCTGCCTTCTGTTACCTATACAAG 60.127 42.308 0.00 0.00 0.00 3.16
3296 3489 3.864789 ATACAAGGCCCCTAATGACAG 57.135 47.619 0.00 0.00 0.00 3.51
3304 3497 2.356135 CCCCTAATGACAGTTGGTTCG 58.644 52.381 2.82 0.00 0.00 3.95
3315 3508 4.457466 ACAGTTGGTTCGTCCATTTAGTT 58.543 39.130 3.33 0.00 46.60 2.24
3344 3539 8.724229 GCAAGAAGATTTTTAGCCAATTCAATT 58.276 29.630 0.00 0.00 0.00 2.32
3375 3570 6.795098 ACGATTATGCAACAACTTTCTACA 57.205 33.333 0.00 0.00 0.00 2.74
3376 3571 7.377766 ACGATTATGCAACAACTTTCTACAT 57.622 32.000 0.00 0.00 0.00 2.29
3388 3583 7.436118 ACAACTTTCTACATGATTGCAACAAT 58.564 30.769 0.00 0.00 0.00 2.71
3389 3584 7.927629 ACAACTTTCTACATGATTGCAACAATT 59.072 29.630 0.00 0.00 0.00 2.32
3392 3587 8.575589 ACTTTCTACATGATTGCAACAATTGTA 58.424 29.630 12.39 7.18 0.00 2.41
3498 3695 6.509317 TTTCTTTCATGAAATTGCAACGAC 57.491 33.333 20.76 0.00 31.81 4.34
3511 3708 2.223144 TGCAACGACAATACACTTCTGC 59.777 45.455 0.00 0.00 0.00 4.26
3582 3779 4.965119 AAAAGTCTCAGTCCACAACAAC 57.035 40.909 0.00 0.00 0.00 3.32
3583 3780 3.627395 AAGTCTCAGTCCACAACAACA 57.373 42.857 0.00 0.00 0.00 3.33
3584 3781 3.845781 AGTCTCAGTCCACAACAACAT 57.154 42.857 0.00 0.00 0.00 2.71
3590 3787 7.285401 AGTCTCAGTCCACAACAACATAAAATT 59.715 33.333 0.00 0.00 0.00 1.82
3627 3829 2.689983 CCACCTCCCATGCATAGTTTTC 59.310 50.000 0.00 0.00 0.00 2.29
3638 3840 5.249780 TGCATAGTTTTCTTCCCCTTGTA 57.750 39.130 0.00 0.00 0.00 2.41
3643 3845 5.578157 AGTTTTCTTCCCCTTGTAGCTTA 57.422 39.130 0.00 0.00 0.00 3.09
3653 3855 3.964031 CCCTTGTAGCTTATGTCTCCTCT 59.036 47.826 0.00 0.00 0.00 3.69
3676 3878 0.181114 GCCATGGTGAGGTGCTATGA 59.819 55.000 14.67 0.00 0.00 2.15
3723 3926 8.472007 TTTTTGTTGTCATCCAATAGGTACTT 57.528 30.769 0.00 0.00 41.75 2.24
3797 4000 1.135603 CCTTGTGACACATTGGATGCG 60.136 52.381 18.13 0.00 0.00 4.73
3801 4004 0.250684 TGACACATTGGATGCGTGGT 60.251 50.000 0.00 0.00 34.91 4.16
3802 4005 1.002544 TGACACATTGGATGCGTGGTA 59.997 47.619 0.00 0.00 34.91 3.25
3898 4101 4.495422 TCATCCGAAACTCTTGCTTAGAC 58.505 43.478 0.00 0.00 0.00 2.59
3911 4114 3.766545 TGCTTAGACCTGGCAAAGATTT 58.233 40.909 7.29 0.00 32.79 2.17
4010 4215 0.538287 GCAGAACCTCTTTGGGCAGT 60.538 55.000 0.00 0.00 41.11 4.40
4030 4235 3.766591 AGTATCAACTGGGTCTCTGACAG 59.233 47.826 0.00 0.00 33.57 3.51
4035 4240 0.605589 CTGGGTCTCTGACAGGTGAC 59.394 60.000 16.15 16.15 33.68 3.67
4109 4314 5.535030 AGGTTGGACAGGTTTCAATTTCTAC 59.465 40.000 0.00 0.00 0.00 2.59
4200 4407 9.786105 CTATTGTTTATGTGATGCATGTGTTAA 57.214 29.630 2.46 0.00 38.47 2.01
4275 4482 6.520272 TGTGGCAATTTTAAGCAAGTTACAT 58.480 32.000 0.00 0.00 0.00 2.29
4280 4487 7.290118 GCAATTTTAAGCAAGTTACATGGTTG 58.710 34.615 14.03 0.00 38.78 3.77
4288 4495 8.630054 AAGCAAGTTACATGGTTGTATCTAAA 57.370 30.769 4.22 0.00 37.38 1.85
4320 4527 8.888716 TGTATATAAGCAAGTTACATGGTTGTG 58.111 33.333 14.03 0.00 38.78 3.33
4427 4825 5.601313 TGTAGGGAAGTGAGTAGAAAGTTGT 59.399 40.000 0.00 0.00 0.00 3.32
4431 4829 7.746703 AGGGAAGTGAGTAGAAAGTTGTTAAT 58.253 34.615 0.00 0.00 0.00 1.40
4479 4877 7.499321 ACAATGTTGTGTTCGTTTTAGGATA 57.501 32.000 0.00 0.00 40.49 2.59
4485 4883 7.117236 TGTTGTGTTCGTTTTAGGATAGACATC 59.883 37.037 0.00 0.00 0.00 3.06
4490 4888 8.092068 TGTTCGTTTTAGGATAGACATCTTTGA 58.908 33.333 0.00 0.00 0.00 2.69
4512 4912 8.506140 TTGATTCTTTTGACGACAAATGATTC 57.494 30.769 25.62 25.62 44.00 2.52
4541 4941 8.294954 AGCTACTACATATGAACACACTAAGT 57.705 34.615 10.38 1.70 0.00 2.24
4567 4967 5.983540 TCCTAAAACATTGTTTTGCTTGGT 58.016 33.333 29.06 10.61 0.00 3.67
4568 4968 5.814705 TCCTAAAACATTGTTTTGCTTGGTG 59.185 36.000 29.06 13.93 0.00 4.17
4605 5006 3.518634 TTGCTTTTGGTTTCACTCCAC 57.481 42.857 0.00 0.00 34.45 4.02
4647 5056 5.586243 CCACTACATGTACTTGCAGCTAATT 59.414 40.000 0.08 0.00 0.00 1.40
4669 5078 4.207891 TCTCAACTGCTCCATTACTTCC 57.792 45.455 0.00 0.00 0.00 3.46
4670 5079 3.582647 TCTCAACTGCTCCATTACTTCCA 59.417 43.478 0.00 0.00 0.00 3.53
4698 5107 1.930908 ATGAACGAGACCCCGTCGAC 61.931 60.000 5.18 5.18 42.54 4.20
4752 5161 6.763355 AGAGTCATGTGATGAAAGTGTTAGT 58.237 36.000 0.00 0.00 41.69 2.24
4835 5244 0.883833 CCTTAGCCAGCAGGTTTGTG 59.116 55.000 0.00 0.00 37.19 3.33
4970 5379 7.120726 GCCTATAGAACTGTTGCTTTCCTTTTA 59.879 37.037 0.00 0.00 0.00 1.52
4971 5380 9.010029 CCTATAGAACTGTTGCTTTCCTTTTAA 57.990 33.333 0.00 0.00 0.00 1.52
4999 5561 8.575649 TTCTTTCTGAAATTATCCCCAACTAC 57.424 34.615 2.88 0.00 0.00 2.73
5000 5562 6.821665 TCTTTCTGAAATTATCCCCAACTACG 59.178 38.462 2.88 0.00 0.00 3.51
5078 5640 3.971245 TTGGTTTTCCTGTGCTTTGTT 57.029 38.095 0.00 0.00 41.38 2.83
5203 5765 7.735326 AGTGATATACCTTTGTTGACTAGGT 57.265 36.000 11.40 11.40 44.26 3.08
5206 5768 7.222224 GTGATATACCTTTGTTGACTAGGTTCG 59.778 40.741 11.75 0.00 42.18 3.95
5207 5769 5.733620 ATACCTTTGTTGACTAGGTTCGA 57.266 39.130 11.75 0.00 42.18 3.71
5240 5802 8.918202 TTACCTTGTGACTATTCATTCAGTTT 57.082 30.769 0.00 0.00 33.11 2.66
5243 5805 7.086376 CCTTGTGACTATTCATTCAGTTTTGG 58.914 38.462 0.00 0.00 33.11 3.28
5265 5827 8.958119 TTGGAGTATGACTACATTATGGAAAC 57.042 34.615 0.00 0.00 39.16 2.78
5266 5828 8.084985 TGGAGTATGACTACATTATGGAAACA 57.915 34.615 0.00 0.00 38.52 2.83
5267 5829 8.544622 TGGAGTATGACTACATTATGGAAACAA 58.455 33.333 0.00 0.00 37.89 2.83
5303 5865 4.441913 GGTTTTCCATGGAATATGTGGCTG 60.442 45.833 27.53 0.00 40.31 4.85
5336 5898 4.740205 GCTTGGTCTTAACTTGAAACTTGC 59.260 41.667 0.00 0.00 0.00 4.01
5346 5908 3.258228 CTTGAAACTTGCGGTTGGTTTT 58.742 40.909 0.00 0.00 38.29 2.43
5375 5937 6.070710 GGTAGTCAGGACTCAGGAATAACTTT 60.071 42.308 5.00 0.00 42.54 2.66
5442 6006 7.367285 TCAAACAATAATGCCTACACTTTCAC 58.633 34.615 0.00 0.00 0.00 3.18
5567 6132 9.753674 AAATGTAGGAAGGATGTTCAGAATAAA 57.246 29.630 0.00 0.00 0.00 1.40
5573 6138 7.995488 AGGAAGGATGTTCAGAATAAAGGTATG 59.005 37.037 0.00 0.00 0.00 2.39
5574 6139 7.993183 GGAAGGATGTTCAGAATAAAGGTATGA 59.007 37.037 0.00 0.00 0.00 2.15
5645 9493 4.706962 GGGAAGAAAATGCAATGTCCTAGT 59.293 41.667 0.00 0.00 0.00 2.57
5658 9506 2.575735 TGTCCTAGTCCATGAATTGGCA 59.424 45.455 0.00 0.00 46.01 4.92
5662 9510 0.685458 AGTCCATGAATTGGCAGCCC 60.685 55.000 9.64 0.00 46.01 5.19
5670 9518 3.618750 TTGGCAGCCCAAGCAAGC 61.619 61.111 9.64 0.00 46.01 4.01
5674 9522 2.567497 GCAGCCCAAGCAAGCAGAA 61.567 57.895 0.00 0.00 43.56 3.02
5679 9527 0.248289 CCCAAGCAAGCAGAAATGGG 59.752 55.000 2.96 2.96 41.38 4.00
5693 9541 0.257039 AATGGGGATCAGGTGCTGAC 59.743 55.000 0.00 0.00 43.63 3.51
5716 9564 1.594293 AAGGTTCGGACACACTGCG 60.594 57.895 0.00 0.00 34.39 5.18
5717 9565 2.279918 GGTTCGGACACACTGCGT 60.280 61.111 0.00 0.00 34.77 5.24
5718 9566 1.885850 GGTTCGGACACACTGCGTT 60.886 57.895 0.00 0.00 34.77 4.84
5719 9567 1.433837 GGTTCGGACACACTGCGTTT 61.434 55.000 0.00 0.00 34.77 3.60
5814 9664 5.593679 TCAGCAACCTACTAAGTGATACC 57.406 43.478 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321210 TTCGCGATGGAGAGGCAAAA 60.321 50.000 10.88 0.00 0.00 2.44
1 2 1.019278 GTTCGCGATGGAGAGGCAAA 61.019 55.000 10.88 0.00 0.00 3.68
281 282 5.279156 CCTGTTTCCTTTGCTAGCTTCATTT 60.279 40.000 17.23 0.00 0.00 2.32
337 338 1.071814 GTGCCTCCACCACCGTAAA 59.928 57.895 0.00 0.00 35.92 2.01
339 340 2.203728 AGTGCCTCCACCACCGTA 60.204 61.111 0.00 0.00 43.09 4.02
426 427 7.865706 ATGCTCAATAGTAAACTTTCCGAAT 57.134 32.000 0.00 0.00 0.00 3.34
460 461 6.810911 ACTCATGAGCTACATTATTCGACTT 58.189 36.000 22.83 0.00 37.07 3.01
560 561 5.592104 TCAAAGGATAGCAACATCGTCTA 57.408 39.130 0.00 0.00 0.00 2.59
615 618 0.604511 CGGCAGGGTAGGTTTTCGTT 60.605 55.000 0.00 0.00 0.00 3.85
616 619 1.004200 CGGCAGGGTAGGTTTTCGT 60.004 57.895 0.00 0.00 0.00 3.85
617 620 1.743995 CCGGCAGGGTAGGTTTTCG 60.744 63.158 0.00 0.00 0.00 3.46
618 621 2.044555 GCCGGCAGGGTAGGTTTTC 61.045 63.158 24.80 0.00 38.44 2.29
619 622 2.035155 GCCGGCAGGGTAGGTTTT 59.965 61.111 24.80 0.00 38.44 2.43
620 623 4.043100 GGCCGGCAGGGTAGGTTT 62.043 66.667 30.85 0.00 38.44 3.27
645 648 4.101448 CTGGAAGGACGGGCAGGG 62.101 72.222 0.00 0.00 0.00 4.45
646 649 2.592993 TTCTGGAAGGACGGGCAGG 61.593 63.158 0.00 0.00 0.00 4.85
647 650 1.376037 GTTCTGGAAGGACGGGCAG 60.376 63.158 0.00 0.00 29.02 4.85
648 651 2.747686 GTTCTGGAAGGACGGGCA 59.252 61.111 0.00 0.00 29.02 5.36
653 656 0.250338 AACGGCAGTTCTGGAAGGAC 60.250 55.000 0.00 0.00 45.30 3.85
654 657 2.142220 AACGGCAGTTCTGGAAGGA 58.858 52.632 0.00 0.00 35.23 3.36
655 658 4.800554 AACGGCAGTTCTGGAAGG 57.199 55.556 0.00 0.00 35.23 3.46
683 686 3.119096 GAAGGGTGAACGCCGAGC 61.119 66.667 0.00 0.00 0.00 5.03
684 687 2.434359 GGAAGGGTGAACGCCGAG 60.434 66.667 0.00 0.00 0.00 4.63
685 688 2.515996 GATGGAAGGGTGAACGCCGA 62.516 60.000 0.00 0.00 0.00 5.54
686 689 2.046314 ATGGAAGGGTGAACGCCG 60.046 61.111 0.00 0.00 0.00 6.46
687 690 0.744771 GAGATGGAAGGGTGAACGCC 60.745 60.000 0.00 0.00 0.00 5.68
688 691 0.744771 GGAGATGGAAGGGTGAACGC 60.745 60.000 0.00 0.00 0.00 4.84
689 692 0.905357 AGGAGATGGAAGGGTGAACG 59.095 55.000 0.00 0.00 0.00 3.95
690 693 2.305927 TGAAGGAGATGGAAGGGTGAAC 59.694 50.000 0.00 0.00 0.00 3.18
691 694 2.631384 TGAAGGAGATGGAAGGGTGAA 58.369 47.619 0.00 0.00 0.00 3.18
692 695 2.342406 TGAAGGAGATGGAAGGGTGA 57.658 50.000 0.00 0.00 0.00 4.02
693 696 3.285484 CAATGAAGGAGATGGAAGGGTG 58.715 50.000 0.00 0.00 0.00 4.61
694 697 2.357569 GCAATGAAGGAGATGGAAGGGT 60.358 50.000 0.00 0.00 0.00 4.34
728 731 4.277593 CGGCAAGCAAAACGGCCA 62.278 61.111 2.24 0.00 46.75 5.36
739 742 2.047274 TCTCGAAAGGGCGGCAAG 60.047 61.111 12.47 0.00 0.00 4.01
740 743 2.358247 GTCTCGAAAGGGCGGCAA 60.358 61.111 12.47 0.00 0.00 4.52
741 744 4.735132 CGTCTCGAAAGGGCGGCA 62.735 66.667 12.47 0.00 0.00 5.69
746 749 4.735132 TGCGGCGTCTCGAAAGGG 62.735 66.667 9.37 0.00 0.00 3.95
747 750 2.509336 ATGCGGCGTCTCGAAAGG 60.509 61.111 9.37 0.00 0.00 3.11
748 751 2.517450 GGATGCGGCGTCTCGAAAG 61.517 63.158 20.61 0.00 0.00 2.62
749 752 2.508439 GGATGCGGCGTCTCGAAA 60.508 61.111 20.61 0.00 0.00 3.46
750 753 4.508128 GGGATGCGGCGTCTCGAA 62.508 66.667 20.61 0.00 0.00 3.71
753 756 4.162690 AAGGGGATGCGGCGTCTC 62.163 66.667 20.61 17.41 0.00 3.36
754 757 4.162690 GAAGGGGATGCGGCGTCT 62.163 66.667 20.61 1.75 0.00 4.18
757 760 4.489771 AAGGAAGGGGATGCGGCG 62.490 66.667 0.51 0.51 0.00 6.46
758 761 2.830370 CAAGGAAGGGGATGCGGC 60.830 66.667 0.00 0.00 0.00 6.53
759 762 2.830370 GCAAGGAAGGGGATGCGG 60.830 66.667 0.00 0.00 0.00 5.69
760 763 2.830370 GGCAAGGAAGGGGATGCG 60.830 66.667 0.00 0.00 39.66 4.73
761 764 2.830370 CGGCAAGGAAGGGGATGC 60.830 66.667 0.00 0.00 38.06 3.91
762 765 1.000896 AACGGCAAGGAAGGGGATG 60.001 57.895 0.00 0.00 0.00 3.51
763 766 1.303282 GAACGGCAAGGAAGGGGAT 59.697 57.895 0.00 0.00 0.00 3.85
772 775 2.483889 GGATTCTAGGAGGAACGGCAAG 60.484 54.545 0.00 0.00 0.00 4.01
782 785 1.698506 ACTGAGGCGGATTCTAGGAG 58.301 55.000 0.00 0.00 0.00 3.69
789 792 0.613260 TGTTGCTACTGAGGCGGATT 59.387 50.000 0.00 0.00 0.00 3.01
790 793 0.613260 TTGTTGCTACTGAGGCGGAT 59.387 50.000 0.00 0.00 0.00 4.18
791 794 0.320421 GTTGTTGCTACTGAGGCGGA 60.320 55.000 0.00 0.00 0.00 5.54
792 795 0.602638 TGTTGTTGCTACTGAGGCGG 60.603 55.000 0.00 0.00 0.00 6.13
793 796 0.792640 CTGTTGTTGCTACTGAGGCG 59.207 55.000 0.00 0.00 0.00 5.52
796 799 3.393089 ACCTCTGTTGTTGCTACTGAG 57.607 47.619 0.00 9.33 39.73 3.35
797 800 4.772624 AGATACCTCTGTTGTTGCTACTGA 59.227 41.667 0.00 0.00 0.00 3.41
798 801 5.078411 AGATACCTCTGTTGTTGCTACTG 57.922 43.478 0.00 0.00 0.00 2.74
799 802 4.160626 GGAGATACCTCTGTTGTTGCTACT 59.839 45.833 0.00 0.00 39.38 2.57
800 803 4.434520 GGAGATACCTCTGTTGTTGCTAC 58.565 47.826 0.00 0.00 39.38 3.58
801 804 3.451178 GGGAGATACCTCTGTTGTTGCTA 59.549 47.826 0.00 0.00 39.38 3.49
802 805 2.237392 GGGAGATACCTCTGTTGTTGCT 59.763 50.000 0.00 0.00 39.38 3.91
803 806 2.027192 TGGGAGATACCTCTGTTGTTGC 60.027 50.000 0.00 0.00 39.38 4.17
804 807 3.981071 TGGGAGATACCTCTGTTGTTG 57.019 47.619 0.00 0.00 39.38 3.33
805 808 5.501156 GAATTGGGAGATACCTCTGTTGTT 58.499 41.667 0.00 0.00 39.38 2.83
806 809 4.080299 GGAATTGGGAGATACCTCTGTTGT 60.080 45.833 0.00 0.00 39.38 3.32
807 810 4.455606 GGAATTGGGAGATACCTCTGTTG 58.544 47.826 0.00 0.00 39.38 3.33
808 811 3.459969 GGGAATTGGGAGATACCTCTGTT 59.540 47.826 0.00 0.00 39.38 3.16
809 812 3.049344 GGGAATTGGGAGATACCTCTGT 58.951 50.000 0.00 0.00 39.38 3.41
810 813 3.048600 TGGGAATTGGGAGATACCTCTG 58.951 50.000 0.00 0.00 39.38 3.35
812 815 4.519906 TTTGGGAATTGGGAGATACCTC 57.480 45.455 0.00 0.00 38.98 3.85
813 816 4.140924 GGATTTGGGAATTGGGAGATACCT 60.141 45.833 0.00 0.00 38.98 3.08
814 817 4.140924 AGGATTTGGGAATTGGGAGATACC 60.141 45.833 0.00 0.00 38.08 2.73
816 819 6.857083 TTAGGATTTGGGAATTGGGAGATA 57.143 37.500 0.00 0.00 0.00 1.98
817 820 5.749422 TTAGGATTTGGGAATTGGGAGAT 57.251 39.130 0.00 0.00 0.00 2.75
818 821 5.749422 ATTAGGATTTGGGAATTGGGAGA 57.251 39.130 0.00 0.00 0.00 3.71
819 822 6.612863 AGAAATTAGGATTTGGGAATTGGGAG 59.387 38.462 0.00 0.00 35.65 4.30
822 825 7.666063 AGAGAAATTAGGATTTGGGAATTGG 57.334 36.000 0.00 0.00 35.65 3.16
823 826 7.983484 CCAAGAGAAATTAGGATTTGGGAATTG 59.017 37.037 0.00 0.00 35.65 2.32
824 827 7.679881 ACCAAGAGAAATTAGGATTTGGGAATT 59.320 33.333 5.47 0.00 35.65 2.17
825 828 7.191918 ACCAAGAGAAATTAGGATTTGGGAAT 58.808 34.615 5.47 0.00 35.65 3.01
826 829 6.561294 ACCAAGAGAAATTAGGATTTGGGAA 58.439 36.000 5.47 0.00 35.65 3.97
827 830 6.152638 ACCAAGAGAAATTAGGATTTGGGA 57.847 37.500 5.47 0.00 35.65 4.37
829 832 6.603201 TGCTACCAAGAGAAATTAGGATTTGG 59.397 38.462 0.00 0.00 35.65 3.28
830 833 7.630242 TGCTACCAAGAGAAATTAGGATTTG 57.370 36.000 0.00 0.00 35.65 2.32
831 834 8.650143 TTTGCTACCAAGAGAAATTAGGATTT 57.350 30.769 0.00 0.00 33.76 2.17
832 835 8.650143 TTTTGCTACCAAGAGAAATTAGGATT 57.350 30.769 0.00 0.00 31.52 3.01
833 836 8.650143 TTTTTGCTACCAAGAGAAATTAGGAT 57.350 30.769 0.00 0.00 31.52 3.24
865 868 1.782044 ATCACACAATGGCGTTTTGC 58.218 45.000 5.53 0.00 45.38 3.68
866 869 4.159377 AGTATCACACAATGGCGTTTTG 57.841 40.909 4.11 4.11 0.00 2.44
867 870 4.846779 AAGTATCACACAATGGCGTTTT 57.153 36.364 0.00 0.00 0.00 2.43
868 871 4.277174 TCAAAGTATCACACAATGGCGTTT 59.723 37.500 0.00 0.00 0.00 3.60
869 872 3.818210 TCAAAGTATCACACAATGGCGTT 59.182 39.130 0.00 0.00 0.00 4.84
870 873 3.407698 TCAAAGTATCACACAATGGCGT 58.592 40.909 0.00 0.00 0.00 5.68
871 874 4.621068 ATCAAAGTATCACACAATGGCG 57.379 40.909 0.00 0.00 0.00 5.69
872 875 5.590259 AGGTATCAAAGTATCACACAATGGC 59.410 40.000 0.00 0.00 0.00 4.40
873 876 7.336679 TCAAGGTATCAAAGTATCACACAATGG 59.663 37.037 0.00 0.00 0.00 3.16
874 877 8.177663 GTCAAGGTATCAAAGTATCACACAATG 58.822 37.037 0.00 0.00 0.00 2.82
890 893 7.148407 ACGTTTCAATGATTCAGTCAAGGTATC 60.148 37.037 0.00 0.00 40.97 2.24
893 896 4.821805 ACGTTTCAATGATTCAGTCAAGGT 59.178 37.500 0.00 0.00 40.97 3.50
900 903 8.883731 ACTAAGGATTACGTTTCAATGATTCAG 58.116 33.333 0.00 0.00 0.00 3.02
917 920 4.816925 GGAGCGCATTAAGAACTAAGGATT 59.183 41.667 11.47 0.00 0.00 3.01
921 924 4.688021 AGAGGAGCGCATTAAGAACTAAG 58.312 43.478 11.47 0.00 0.00 2.18
922 925 4.737855 AGAGGAGCGCATTAAGAACTAA 57.262 40.909 11.47 0.00 0.00 2.24
937 940 7.175641 ACAAAACTGACAATATGGAAAGAGGAG 59.824 37.037 0.00 0.00 0.00 3.69
950 953 7.042797 AGTGCAGAATTACAAAACTGACAAT 57.957 32.000 0.00 0.00 32.90 2.71
954 957 5.277779 CGGAAGTGCAGAATTACAAAACTGA 60.278 40.000 0.00 0.00 32.90 3.41
977 980 2.432444 TCCCTGGCTTCAACAATTACG 58.568 47.619 0.00 0.00 0.00 3.18
982 985 1.962807 CATGTTCCCTGGCTTCAACAA 59.037 47.619 0.00 0.00 32.66 2.83
990 993 1.273327 CAAACTTCCATGTTCCCTGGC 59.727 52.381 0.00 0.00 33.56 4.85
996 999 1.335872 CCGGTGCAAACTTCCATGTTC 60.336 52.381 0.00 0.00 0.00 3.18
1027 1030 6.577103 TCATGTCTGAGGTTATGTCAAGATC 58.423 40.000 0.00 0.00 0.00 2.75
1033 1036 3.865745 CCGTTCATGTCTGAGGTTATGTC 59.134 47.826 0.00 0.00 31.68 3.06
1047 1050 0.713883 CGTCCGTCTTTCCGTTCATG 59.286 55.000 0.00 0.00 0.00 3.07
1052 1055 1.214589 CCATCGTCCGTCTTTCCGT 59.785 57.895 0.00 0.00 0.00 4.69
1054 1057 2.165301 CGCCATCGTCCGTCTTTCC 61.165 63.158 0.00 0.00 0.00 3.13
1072 1075 4.452733 CTCCGTTCCCACCTCGGC 62.453 72.222 0.00 0.00 43.35 5.54
1075 1078 4.097361 GGGCTCCGTTCCCACCTC 62.097 72.222 0.00 0.00 43.37 3.85
1096 1099 1.129811 GTCCCTTTCAAATACGGCGTG 59.870 52.381 24.86 5.74 0.00 5.34
1124 1127 0.572590 CAATTCCTCGTCGTCATCGC 59.427 55.000 0.00 0.00 36.96 4.58
1128 1131 0.108804 GCTCCAATTCCTCGTCGTCA 60.109 55.000 0.00 0.00 0.00 4.35
1157 1163 2.215196 GTTTCCGCAAGACACCTAACA 58.785 47.619 0.00 0.00 43.02 2.41
1158 1164 1.534163 GGTTTCCGCAAGACACCTAAC 59.466 52.381 2.52 0.00 41.45 2.34
1190 1196 4.507512 GGGGAAGAAGAGAATGGAAGTGTT 60.508 45.833 0.00 0.00 0.00 3.32
1192 1198 3.009473 TGGGGAAGAAGAGAATGGAAGTG 59.991 47.826 0.00 0.00 0.00 3.16
1197 1203 3.084786 GTGTTGGGGAAGAAGAGAATGG 58.915 50.000 0.00 0.00 0.00 3.16
1249 1255 4.033587 GTGAAGCAAAAGTGTAGACGAACA 59.966 41.667 0.00 0.00 0.00 3.18
1252 1258 3.787785 TGTGAAGCAAAAGTGTAGACGA 58.212 40.909 0.00 0.00 0.00 4.20
1255 1261 4.261155 GCACATGTGAAGCAAAAGTGTAGA 60.261 41.667 29.80 0.00 33.72 2.59
1260 1266 2.034124 AGGCACATGTGAAGCAAAAGT 58.966 42.857 29.80 0.00 0.00 2.66
1286 1292 4.669206 AAACAGTTCAAATGGCATCACA 57.331 36.364 0.00 0.00 0.00 3.58
1336 1346 1.617536 AGGATCAAGCCAGGCCTGA 60.618 57.895 34.91 15.45 33.37 3.86
1442 1453 6.096001 ACATAAACGATCGGGTAGAGTTAAGT 59.904 38.462 20.98 6.22 0.00 2.24
1457 1468 5.163301 ACTGGCAATCCTAGACATAAACGAT 60.163 40.000 0.00 0.00 0.00 3.73
1480 1494 4.027214 GCAACACGTGTGACCAAATTTTAC 60.027 41.667 24.16 0.00 0.00 2.01
1481 1495 4.106197 GCAACACGTGTGACCAAATTTTA 58.894 39.130 24.16 0.00 0.00 1.52
1498 1516 2.238395 TCTGGCACATATACCTGCAACA 59.762 45.455 5.95 0.00 38.20 3.33
1499 1517 2.917933 TCTGGCACATATACCTGCAAC 58.082 47.619 5.95 0.00 38.20 4.17
1500 1518 3.479489 CATCTGGCACATATACCTGCAA 58.521 45.455 5.95 0.00 38.20 4.08
1511 1529 0.251297 CCTTTCACCCATCTGGCACA 60.251 55.000 0.00 0.00 37.83 4.57
1526 1544 1.264295 GGTGGTAGGTCGTCTCCTTT 58.736 55.000 2.52 0.00 38.86 3.11
1571 1589 3.127548 CCAGTTGTAAGCATGACATGGAC 59.872 47.826 17.03 1.41 0.00 4.02
1629 1647 2.488937 GCTACCGATACCTCCTTCTAGC 59.511 54.545 0.00 0.00 0.00 3.42
1651 1669 9.920133 CACACTAGACAATCAACAGCTATATAT 57.080 33.333 0.00 0.00 0.00 0.86
1652 1670 8.914011 ACACACTAGACAATCAACAGCTATATA 58.086 33.333 0.00 0.00 0.00 0.86
1653 1671 7.786030 ACACACTAGACAATCAACAGCTATAT 58.214 34.615 0.00 0.00 0.00 0.86
1654 1672 7.170393 ACACACTAGACAATCAACAGCTATA 57.830 36.000 0.00 0.00 0.00 1.31
1680 1698 4.162131 ACAAGAAATGTGAAACTTTGGGCT 59.838 37.500 0.00 0.00 41.93 5.19
1713 1731 1.443194 GCAGCACAATTCACCGCAG 60.443 57.895 0.00 0.00 0.00 5.18
1758 1776 7.814587 GGAGTATAAAATGCATTAATTCTGGGC 59.185 37.037 13.39 2.23 0.00 5.36
1834 1852 8.128582 CACAACATGTAGAACTAAAGCAAGAAA 58.871 33.333 0.00 0.00 0.00 2.52
1835 1853 7.639039 CACAACATGTAGAACTAAAGCAAGAA 58.361 34.615 0.00 0.00 0.00 2.52
1836 1854 6.293407 GCACAACATGTAGAACTAAAGCAAGA 60.293 38.462 0.00 0.00 0.00 3.02
1884 1907 8.726870 AAGCTAGTTTTGTAGTGTAGTTGAAA 57.273 30.769 0.00 0.00 0.00 2.69
1999 2023 6.714356 AGTAAAGAGCTTTGAGATCAAAAGCT 59.286 34.615 32.17 32.17 44.24 3.74
2064 2088 5.476599 TCAGTGCCTTGCTTAACATACAATT 59.523 36.000 0.00 0.00 0.00 2.32
2066 2090 4.393834 TCAGTGCCTTGCTTAACATACAA 58.606 39.130 0.00 0.00 0.00 2.41
2211 2235 3.157087 CCTGTTTGGTACCTGATGCTTT 58.843 45.455 14.36 0.00 0.00 3.51
2295 2319 5.065218 CAGAGAGATTATTCCCACCAAAACG 59.935 44.000 0.00 0.00 0.00 3.60
2312 2336 9.605275 CAATTCCTGAATAACATTACAGAGAGA 57.395 33.333 0.00 0.00 32.90 3.10
2356 2380 6.417258 TGGTATTTGAGAGCAATCATTCTCA 58.583 36.000 0.35 0.35 45.89 3.27
2362 2386 4.574674 ACCTGGTATTTGAGAGCAATCA 57.425 40.909 0.00 0.00 33.25 2.57
2416 2440 4.649218 ACACTCAATAGGCAACAACCTTTT 59.351 37.500 0.00 0.00 41.50 2.27
2434 2459 9.888878 GGTAAAACAAAGACCTAAATAACACTC 57.111 33.333 0.00 0.00 0.00 3.51
2455 2481 5.011227 GGCAACAAATTACAAGGGAGGTAAA 59.989 40.000 0.00 0.00 34.67 2.01
2490 2516 1.474077 GTGGCCAGGAAATACTGCAAG 59.526 52.381 5.11 0.00 37.16 4.01
2530 2556 3.595691 GGCTCAGGTACATGATCCG 57.404 57.895 13.99 3.02 0.00 4.18
2539 2565 0.172578 CGAACATGACGGCTCAGGTA 59.827 55.000 0.00 0.00 40.55 3.08
2578 2604 6.047870 CCTTCTACCATCATCAGTTCTGAAG 58.952 44.000 6.60 2.85 0.00 3.02
2621 2647 4.581409 TGGTCCATGAATAACTGCATCATG 59.419 41.667 16.83 16.83 46.31 3.07
2642 2668 3.865164 GCACAAAGAAAACCTCAAACTGG 59.135 43.478 0.00 0.00 0.00 4.00
2660 2686 2.437651 TGTAAGCATAGGCCATAGCACA 59.562 45.455 5.01 3.98 42.56 4.57
2666 2692 5.165961 ACGAATATGTAAGCATAGGCCAT 57.834 39.130 5.01 0.00 40.51 4.40
2727 2753 1.208776 TCCTCATCATCCTGCACACAG 59.791 52.381 0.00 0.00 44.05 3.66
2871 2897 2.646250 ACACAATTTACGCAAACGAGC 58.354 42.857 0.00 0.00 43.93 5.03
2872 2898 5.331235 GGAAAACACAATTTACGCAAACGAG 60.331 40.000 0.00 0.00 43.93 4.18
2901 2927 7.011295 AGACCTAACTCTAGTTTTCTCGATACG 59.989 40.741 0.00 0.00 39.31 3.06
2952 2978 1.065926 TGGAGACAGTGCATCATGTCC 60.066 52.381 19.87 12.52 45.61 4.02
2953 2979 2.005451 GTGGAGACAGTGCATCATGTC 58.995 52.381 17.26 17.26 44.46 3.06
2964 2990 2.297315 TGCTTCAGTGTAGTGGAGACAG 59.703 50.000 0.00 0.00 44.46 3.51
2971 2997 6.258727 CCCATATAGTTTGCTTCAGTGTAGTG 59.741 42.308 0.00 0.00 0.00 2.74
2997 3023 4.431416 AATGTTGACCAGAACACCAGTA 57.569 40.909 0.00 0.00 38.64 2.74
3051 3077 4.466370 CCAACACCTAGTCATGTCCTTAGA 59.534 45.833 0.00 0.00 0.00 2.10
3057 3083 3.589988 CAGACCAACACCTAGTCATGTC 58.410 50.000 0.00 0.00 32.82 3.06
3079 3266 2.032550 GTCGATCAAATGCCCACATCAG 59.967 50.000 0.00 0.00 34.62 2.90
3091 3278 3.194968 GGTAGTCCTGAAGGTCGATCAAA 59.805 47.826 0.00 0.00 36.34 2.69
3105 3292 3.207777 ACTCATGGTCCTATGGTAGTCCT 59.792 47.826 0.00 0.00 34.23 3.85
3167 3359 2.751259 ACTCGTTACAATGTAGAGCGGA 59.249 45.455 8.90 0.00 32.60 5.54
3170 3362 5.340803 TCATGACTCGTTACAATGTAGAGC 58.659 41.667 8.90 4.36 32.60 4.09
3187 3379 4.378616 CGTTTGACGACCAAAAATCATGAC 59.621 41.667 0.00 0.00 46.05 3.06
3266 3459 3.043418 GGGGCCTTGTATAGGTAACAGA 58.957 50.000 0.84 0.00 46.61 3.41
3267 3460 3.046374 AGGGGCCTTGTATAGGTAACAG 58.954 50.000 0.84 0.00 46.61 3.16
3271 3464 4.842380 GTCATTAGGGGCCTTGTATAGGTA 59.158 45.833 0.84 0.00 46.61 3.08
3275 3468 4.303794 ACTGTCATTAGGGGCCTTGTATA 58.696 43.478 0.84 0.00 0.00 1.47
3276 3469 3.123273 ACTGTCATTAGGGGCCTTGTAT 58.877 45.455 0.84 0.00 0.00 2.29
3282 3475 0.331616 ACCAACTGTCATTAGGGGCC 59.668 55.000 0.00 0.00 0.00 5.80
3283 3476 2.092323 GAACCAACTGTCATTAGGGGC 58.908 52.381 0.00 0.00 0.00 5.80
3304 3497 8.593492 AAATCTTCTTGCAAAACTAAATGGAC 57.407 30.769 0.00 0.00 0.00 4.02
3315 3508 7.714377 TGAATTGGCTAAAAATCTTCTTGCAAA 59.286 29.630 0.00 0.00 0.00 3.68
3344 3539 9.469807 AAAGTTGTTGCATAATCGTTCATTTTA 57.530 25.926 0.00 0.00 0.00 1.52
3441 3638 2.154462 CATGGTTCTTCTTGCGAAGGT 58.846 47.619 2.09 0.00 45.36 3.50
3447 3644 4.012374 TGAGAATCCATGGTTCTTCTTGC 58.988 43.478 22.48 13.96 36.13 4.01
3498 3695 2.855180 CAAAGCCGCAGAAGTGTATTG 58.145 47.619 0.00 0.00 0.00 1.90
3511 3708 1.550659 GCACACATGTTGCAAAGCCG 61.551 55.000 20.83 0.00 0.00 5.52
3565 3762 6.371809 TTTTATGTTGTTGTGGACTGAGAC 57.628 37.500 0.00 0.00 0.00 3.36
3590 3787 5.222048 GGGAGGTGGGATATTGCTACATAAA 60.222 44.000 0.00 0.00 0.00 1.40
3595 3792 2.054799 TGGGAGGTGGGATATTGCTAC 58.945 52.381 0.00 0.00 0.00 3.58
3598 3800 1.915141 CATGGGAGGTGGGATATTGC 58.085 55.000 0.00 0.00 0.00 3.56
3627 3829 4.443598 GGAGACATAAGCTACAAGGGGAAG 60.444 50.000 0.00 0.00 0.00 3.46
3638 3840 2.903135 GGCCATAGAGGAGACATAAGCT 59.097 50.000 0.00 0.00 41.22 3.74
3643 3845 1.983691 CCATGGCCATAGAGGAGACAT 59.016 52.381 20.30 0.00 41.22 3.06
3653 3855 1.227102 GCACCTCACCATGGCCATA 59.773 57.895 20.30 0.95 0.00 2.74
3676 3878 1.071699 TGAAAGGTAGCTCCGCAAGTT 59.928 47.619 0.00 0.00 41.99 2.66
3882 4085 2.744741 GCCAGGTCTAAGCAAGAGTTTC 59.255 50.000 0.00 0.00 33.88 2.78
3898 4101 3.258872 TGATCAACCAAATCTTTGCCAGG 59.741 43.478 0.00 0.00 36.86 4.45
3911 4114 2.189594 CAAGGAGTGCTGATCAACCA 57.810 50.000 0.00 0.00 0.00 3.67
3982 4187 4.077822 CAAAGAGGTTCTGCATCTTCCTT 58.922 43.478 0.18 0.00 46.13 3.36
4010 4215 3.099905 CCTGTCAGAGACCCAGTTGATA 58.900 50.000 0.00 0.00 0.00 2.15
4030 4235 1.940613 GCACAAAGGGATATCGTCACC 59.059 52.381 0.00 0.00 0.00 4.02
4035 4240 5.702670 ACAATAGATGCACAAAGGGATATCG 59.297 40.000 0.00 0.00 0.00 2.92
4169 4376 7.725397 ACATGCATCACATAAACAATAGGGTAT 59.275 33.333 0.00 0.00 36.64 2.73
4170 4377 7.013178 CACATGCATCACATAAACAATAGGGTA 59.987 37.037 0.00 0.00 36.64 3.69
4228 4435 7.489113 CACATTGCCAGGTTTTAGAATTACATC 59.511 37.037 0.00 0.00 0.00 3.06
4229 4436 7.322664 CACATTGCCAGGTTTTAGAATTACAT 58.677 34.615 0.00 0.00 0.00 2.29
4230 4437 6.295011 CCACATTGCCAGGTTTTAGAATTACA 60.295 38.462 0.00 0.00 0.00 2.41
4231 4438 6.099341 CCACATTGCCAGGTTTTAGAATTAC 58.901 40.000 0.00 0.00 0.00 1.89
4232 4439 5.337169 GCCACATTGCCAGGTTTTAGAATTA 60.337 40.000 0.00 0.00 0.00 1.40
4233 4440 4.563374 GCCACATTGCCAGGTTTTAGAATT 60.563 41.667 0.00 0.00 0.00 2.17
4234 4441 3.055891 GCCACATTGCCAGGTTTTAGAAT 60.056 43.478 0.00 0.00 0.00 2.40
4235 4442 2.298729 GCCACATTGCCAGGTTTTAGAA 59.701 45.455 0.00 0.00 0.00 2.10
4236 4443 1.892474 GCCACATTGCCAGGTTTTAGA 59.108 47.619 0.00 0.00 0.00 2.10
4246 4453 3.072944 TGCTTAAAATTGCCACATTGCC 58.927 40.909 0.00 0.00 0.00 4.52
4386 4784 8.597662 TTCCCTACAGTAATAATCAAATACGC 57.402 34.615 0.00 0.00 0.00 4.42
4479 4877 6.483307 TGTCGTCAAAAGAATCAAAGATGTCT 59.517 34.615 0.00 0.00 0.00 3.41
4485 4883 7.912949 TCATTTGTCGTCAAAAGAATCAAAG 57.087 32.000 11.69 0.00 44.97 2.77
4490 4888 6.980593 TGGAATCATTTGTCGTCAAAAGAAT 58.019 32.000 14.94 8.48 44.97 2.40
4512 4912 7.661968 AGTGTGTTCATATGTAGTAGCTATGG 58.338 38.462 1.90 0.00 0.00 2.74
4541 4941 6.314896 CCAAGCAAAACAATGTTTTAGGAACA 59.685 34.615 21.78 0.00 34.31 3.18
4599 5000 8.778059 TGGAAATAAATATAAGTGGAGTGGAGT 58.222 33.333 0.00 0.00 0.00 3.85
4647 5056 4.041567 TGGAAGTAATGGAGCAGTTGAGAA 59.958 41.667 0.00 0.00 0.00 2.87
4669 5078 4.475944 GGGTCTCGTTCATTTTCAACATG 58.524 43.478 0.00 0.00 0.00 3.21
4670 5079 3.506067 GGGGTCTCGTTCATTTTCAACAT 59.494 43.478 0.00 0.00 0.00 2.71
4752 5161 9.126151 TGAACACATACAAATTCTTCCTTGTAA 57.874 29.630 0.00 0.00 40.42 2.41
4771 5180 1.134220 AGGCGGAGAAAACTGAACACA 60.134 47.619 0.00 0.00 0.00 3.72
4896 5305 5.402398 AGCAACACTTCTCAAAAACAAGTC 58.598 37.500 0.00 0.00 0.00 3.01
4901 5310 5.491635 AGAGAGCAACACTTCTCAAAAAC 57.508 39.130 4.53 0.00 0.00 2.43
4949 5358 7.875327 ACTTAAAAGGAAAGCAACAGTTCTA 57.125 32.000 0.00 0.00 0.00 2.10
4999 5561 5.121142 ACAGTTCCATAAATCCGTAACAACG 59.879 40.000 0.00 0.00 0.00 4.10
5000 5562 6.490566 ACAGTTCCATAAATCCGTAACAAC 57.509 37.500 0.00 0.00 0.00 3.32
5189 5751 5.770417 ACTACTCGAACCTAGTCAACAAAG 58.230 41.667 0.00 0.00 0.00 2.77
5191 5753 7.458409 AATACTACTCGAACCTAGTCAACAA 57.542 36.000 1.39 0.00 0.00 2.83
5203 5765 7.458409 AGTCACAAGGTAAATACTACTCGAA 57.542 36.000 0.00 0.00 0.00 3.71
5234 5796 9.599866 CATAATGTAGTCATACTCCAAAACTGA 57.400 33.333 0.00 0.00 33.49 3.41
5235 5797 8.830580 CCATAATGTAGTCATACTCCAAAACTG 58.169 37.037 0.00 0.00 33.49 3.16
5236 5798 8.768397 TCCATAATGTAGTCATACTCCAAAACT 58.232 33.333 0.00 0.00 33.49 2.66
5240 5802 8.544622 TGTTTCCATAATGTAGTCATACTCCAA 58.455 33.333 0.00 0.00 33.49 3.53
5276 5838 6.461509 GCCACATATTCCATGGAAAACCTTAG 60.462 42.308 30.28 16.90 37.69 2.18
5303 5865 0.538287 AAGACCAAGCAAGACCAGCC 60.538 55.000 0.00 0.00 0.00 4.85
5336 5898 2.683867 TGACTACCACAAAAACCAACCG 59.316 45.455 0.00 0.00 0.00 4.44
5346 5908 2.158370 TCCTGAGTCCTGACTACCACAA 60.158 50.000 0.00 0.00 42.66 3.33
5411 5975 8.893727 AGTGTAGGCATTATTGTTTGAATCTAC 58.106 33.333 0.00 0.00 0.00 2.59
5416 5980 7.865385 GTGAAAGTGTAGGCATTATTGTTTGAA 59.135 33.333 0.00 0.00 0.00 2.69
5545 6110 7.339482 ACCTTTATTCTGAACATCCTTCCTAC 58.661 38.462 0.00 0.00 0.00 3.18
5567 6132 6.245408 TCAAGCACCTTTTTATGTCATACCT 58.755 36.000 0.00 0.00 0.00 3.08
5573 6138 8.084684 AGAAATTCTCAAGCACCTTTTTATGTC 58.915 33.333 0.00 0.00 0.00 3.06
5574 6139 7.955918 AGAAATTCTCAAGCACCTTTTTATGT 58.044 30.769 0.00 0.00 0.00 2.29
5658 9506 0.606604 CATTTCTGCTTGCTTGGGCT 59.393 50.000 0.00 0.00 39.59 5.19
5662 9510 1.259609 TCCCCATTTCTGCTTGCTTG 58.740 50.000 0.00 0.00 0.00 4.01
5670 9518 1.064166 AGCACCTGATCCCCATTTCTG 60.064 52.381 0.00 0.00 0.00 3.02
5674 9522 0.257039 GTCAGCACCTGATCCCCATT 59.743 55.000 0.00 0.00 42.73 3.16
5679 9527 2.512515 GCGGTCAGCACCTGATCC 60.513 66.667 0.00 1.95 42.73 3.36
5703 9551 2.770134 AAAAACGCAGTGTGTCCGA 58.230 47.368 10.29 0.00 45.00 4.55
5726 9574 5.380043 AGGTGGGATTACAATCAAGCATAG 58.620 41.667 4.45 0.00 37.15 2.23
5784 9632 9.582648 TCACTTAGTAGGTTGCTGATGTATATA 57.417 33.333 0.00 0.00 0.00 0.86
5785 9633 8.478775 TCACTTAGTAGGTTGCTGATGTATAT 57.521 34.615 0.00 0.00 0.00 0.86
5795 9645 3.453353 TGGGGTATCACTTAGTAGGTTGC 59.547 47.826 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.