Multiple sequence alignment - TraesCS7A01G534100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G534100 chr7A 100.000 2910 0 0 1 2910 712337420 712340329 0.000000e+00 5374
1 TraesCS7A01G534100 chr7A 93.327 989 44 8 1 971 620427917 620426933 0.000000e+00 1441
2 TraesCS7A01G534100 chr7A 88.499 913 101 2 1008 1919 706344581 706343672 0.000000e+00 1101
3 TraesCS7A01G534100 chr4A 97.631 971 22 1 1 970 573643176 573644146 0.000000e+00 1664
4 TraesCS7A01G534100 chr4A 86.901 313 28 1 2292 2604 637399283 637399582 3.590000e-89 339
5 TraesCS7A01G534100 chr6A 97.322 971 25 1 1 970 582846118 582845148 0.000000e+00 1648
6 TraesCS7A01G534100 chr6A 96.807 971 30 1 1 970 409140169 409139199 0.000000e+00 1620
7 TraesCS7A01G534100 chr6A 94.135 989 35 9 1 970 80041670 80040686 0.000000e+00 1483
8 TraesCS7A01G534100 chr6A 96.957 690 21 0 1 690 557919330 557920019 0.000000e+00 1158
9 TraesCS7A01G534100 chr6A 93.985 133 7 1 2188 2319 382843742 382843874 1.770000e-47 200
10 TraesCS7A01G534100 chr3A 96.910 971 29 1 1 970 745170343 745171313 0.000000e+00 1626
11 TraesCS7A01G534100 chr3A 97.101 690 20 0 1 690 31919062 31919751 0.000000e+00 1164
12 TraesCS7A01G534100 chr1A 95.005 981 38 9 1 970 57971621 57970641 0.000000e+00 1530
13 TraesCS7A01G534100 chr1A 87.066 317 28 1 2292 2608 577584595 577584292 2.150000e-91 346
14 TraesCS7A01G534100 chr1A 86.435 317 30 1 2292 2608 213267022 213266719 4.650000e-88 335
15 TraesCS7A01G534100 chr1D 88.765 988 82 23 6 971 482480365 482481345 0.000000e+00 1182
16 TraesCS7A01G534100 chr1D 93.452 168 10 1 2438 2605 95172753 95172919 6.230000e-62 248
17 TraesCS7A01G534100 chr7B 92.166 817 52 6 1378 2183 713117955 713118770 0.000000e+00 1144
18 TraesCS7A01G534100 chr7B 86.264 961 113 11 974 1923 706160851 706159899 0.000000e+00 1026
19 TraesCS7A01G534100 chr7B 86.674 923 112 7 1005 1919 706108312 706107393 0.000000e+00 1013
20 TraesCS7A01G534100 chr7B 85.864 955 123 10 973 1922 706060606 706059659 0.000000e+00 1005
21 TraesCS7A01G534100 chr7B 93.961 414 23 2 970 1382 713117273 713117685 2.460000e-175 625
22 TraesCS7A01G534100 chr7B 86.417 508 63 5 972 1477 706155621 706155118 4.240000e-153 551
23 TraesCS7A01G534100 chr7B 87.500 432 54 0 1491 1922 706135279 706134848 1.560000e-137 499
24 TraesCS7A01G534100 chr7B 84.289 471 60 8 1425 1892 706188936 706189395 5.720000e-122 448
25 TraesCS7A01G534100 chr7B 86.833 281 35 2 2619 2898 713118785 713119064 2.180000e-81 313
26 TraesCS7A01G534100 chr7B 92.537 134 8 2 2189 2320 123036708 123036575 1.060000e-44 191
27 TraesCS7A01G534100 chr7B 88.608 158 16 2 1186 1341 706188729 706188886 1.060000e-44 191
28 TraesCS7A01G534100 chr7B 92.308 130 9 1 2189 2317 463483871 463483742 1.780000e-42 183
29 TraesCS7A01G534100 chr7D 87.461 957 103 9 973 1919 614276605 614275656 0.000000e+00 1086
30 TraesCS7A01G534100 chr1B 86.432 995 101 26 6 976 35567777 35568761 0.000000e+00 1059
31 TraesCS7A01G534100 chr1B 86.744 347 33 1 2252 2598 549769228 549768895 9.850000e-100 374
32 TraesCS7A01G534100 chr1B 87.619 315 22 5 2292 2604 562622998 562622699 1.660000e-92 350
33 TraesCS7A01G534100 chr1B 86.943 314 28 5 2292 2605 258831390 258831690 9.990000e-90 340
34 TraesCS7A01G534100 chr1B 86.282 277 25 1 2292 2568 529442398 529442135 3.670000e-74 289
35 TraesCS7A01G534100 chr1B 93.023 129 8 1 2190 2317 388003613 388003485 1.380000e-43 187
36 TraesCS7A01G534100 chr5D 88.535 314 23 1 2292 2605 389126751 389127051 4.580000e-98 368
37 TraesCS7A01G534100 chr3B 87.580 314 26 4 2292 2605 761093072 761093372 4.610000e-93 351
38 TraesCS7A01G534100 chr3B 93.130 131 8 1 2189 2318 685658692 685658562 1.060000e-44 191
39 TraesCS7A01G534100 chr3B 91.791 134 10 1 2189 2321 685630197 685630064 4.950000e-43 185
40 TraesCS7A01G534100 chr2A 87.580 314 24 3 2292 2604 640097778 640098077 1.660000e-92 350
41 TraesCS7A01G534100 chr5B 87.879 297 22 2 2292 2588 51971378 51971096 1.290000e-88 337
42 TraesCS7A01G534100 chr6D 86.581 313 29 2 2292 2604 435701946 435702245 1.670000e-87 333
43 TraesCS7A01G534100 chr3D 88.087 277 28 2 2292 2568 552623854 552623583 1.010000e-84 324
44 TraesCS7A01G534100 chr2B 85.669 314 31 4 2291 2604 25261023 25261322 4.680000e-83 318
45 TraesCS7A01G534100 chr2B 92.481 133 9 1 2186 2317 237974104 237974236 3.830000e-44 189
46 TraesCS7A01G534100 chr4B 84.639 319 42 5 2292 2604 626963873 626963556 7.830000e-81 311
47 TraesCS7A01G534100 chr5A 94.574 129 6 1 2190 2317 113726637 113726765 6.360000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G534100 chr7A 712337420 712340329 2909 False 5374.0 5374 100.000000 1 2910 1 chr7A.!!$F1 2909
1 TraesCS7A01G534100 chr7A 620426933 620427917 984 True 1441.0 1441 93.327000 1 971 1 chr7A.!!$R1 970
2 TraesCS7A01G534100 chr7A 706343672 706344581 909 True 1101.0 1101 88.499000 1008 1919 1 chr7A.!!$R2 911
3 TraesCS7A01G534100 chr4A 573643176 573644146 970 False 1664.0 1664 97.631000 1 970 1 chr4A.!!$F1 969
4 TraesCS7A01G534100 chr6A 582845148 582846118 970 True 1648.0 1648 97.322000 1 970 1 chr6A.!!$R3 969
5 TraesCS7A01G534100 chr6A 409139199 409140169 970 True 1620.0 1620 96.807000 1 970 1 chr6A.!!$R2 969
6 TraesCS7A01G534100 chr6A 80040686 80041670 984 True 1483.0 1483 94.135000 1 970 1 chr6A.!!$R1 969
7 TraesCS7A01G534100 chr6A 557919330 557920019 689 False 1158.0 1158 96.957000 1 690 1 chr6A.!!$F2 689
8 TraesCS7A01G534100 chr3A 745170343 745171313 970 False 1626.0 1626 96.910000 1 970 1 chr3A.!!$F2 969
9 TraesCS7A01G534100 chr3A 31919062 31919751 689 False 1164.0 1164 97.101000 1 690 1 chr3A.!!$F1 689
10 TraesCS7A01G534100 chr1A 57970641 57971621 980 True 1530.0 1530 95.005000 1 970 1 chr1A.!!$R1 969
11 TraesCS7A01G534100 chr1D 482480365 482481345 980 False 1182.0 1182 88.765000 6 971 1 chr1D.!!$F2 965
12 TraesCS7A01G534100 chr7B 706159899 706160851 952 True 1026.0 1026 86.264000 974 1923 1 chr7B.!!$R7 949
13 TraesCS7A01G534100 chr7B 706107393 706108312 919 True 1013.0 1013 86.674000 1005 1919 1 chr7B.!!$R4 914
14 TraesCS7A01G534100 chr7B 706059659 706060606 947 True 1005.0 1005 85.864000 973 1922 1 chr7B.!!$R3 949
15 TraesCS7A01G534100 chr7B 713117273 713119064 1791 False 694.0 1144 90.986667 970 2898 3 chr7B.!!$F2 1928
16 TraesCS7A01G534100 chr7B 706155118 706155621 503 True 551.0 551 86.417000 972 1477 1 chr7B.!!$R6 505
17 TraesCS7A01G534100 chr7B 706188729 706189395 666 False 319.5 448 86.448500 1186 1892 2 chr7B.!!$F1 706
18 TraesCS7A01G534100 chr7D 614275656 614276605 949 True 1086.0 1086 87.461000 973 1919 1 chr7D.!!$R1 946
19 TraesCS7A01G534100 chr1B 35567777 35568761 984 False 1059.0 1059 86.432000 6 976 1 chr1B.!!$F1 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 706 2.109126 GGTGACTTGCGATGGAGGC 61.109 63.158 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 2858 0.032815 CCGGGCCGAATGTTGTTTTT 59.967 50.0 30.79 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 438 3.665190 ACCGAAATCTCCTCACAACTTC 58.335 45.455 0.00 0.00 0.00 3.01
492 590 3.105203 CGTGAAAAAGTTGATGCACGTT 58.895 40.909 12.24 0.00 42.68 3.99
589 706 2.109126 GGTGACTTGCGATGGAGGC 61.109 63.158 0.00 0.00 0.00 4.70
758 897 4.989044 TCAAAAGAGTACGCACGATGATA 58.011 39.130 0.00 0.00 0.00 2.15
943 1087 6.406370 GCCATATAATACATGTGCTCTGGTA 58.594 40.000 9.11 0.00 0.00 3.25
992 1136 4.468095 AAAAATATAGTGGCGTGCGATC 57.532 40.909 0.00 0.00 0.00 3.69
1010 1154 7.489435 CGTGCGATCTGATATAATGTTCCTATT 59.511 37.037 0.00 0.00 0.00 1.73
1107 1251 1.920325 CACCAAGAGGGAGAGGGCA 60.920 63.158 0.00 0.00 41.15 5.36
1297 1442 1.075212 TCACATGGGCAATGGTCTTGA 59.925 47.619 6.84 0.00 40.94 3.02
1303 1448 1.683385 GGGCAATGGTCTTGATAAGCC 59.317 52.381 0.00 0.00 40.08 4.35
1305 1450 3.026694 GGCAATGGTCTTGATAAGCCTT 58.973 45.455 0.00 0.00 37.89 4.35
1352 1498 2.354259 GAGGAGGTTCTGCATGTCTTG 58.646 52.381 0.00 0.00 0.00 3.02
1397 1817 3.256631 AGGGCATAAACAAGCTGAAAGTG 59.743 43.478 0.00 0.00 35.30 3.16
1574 2005 2.604686 AGACGAAGCTGGGAGGCA 60.605 61.111 0.00 0.00 34.17 4.75
1588 2019 1.350351 GGAGGCATCACATATCCAGCT 59.650 52.381 0.00 0.00 0.00 4.24
1627 2058 2.679450 CCAATTGTGTGCATTCACCAG 58.321 47.619 4.43 0.00 42.46 4.00
1669 2100 6.352516 AGAAGATGTCGATGAATTTAAGCCT 58.647 36.000 0.00 0.00 0.00 4.58
1702 2133 3.406361 GGTATCGCTGGCGCATCG 61.406 66.667 10.83 9.44 39.59 3.84
1720 2151 2.649140 CGAAAAACTCGCCAACGTTA 57.351 45.000 0.00 0.00 41.49 3.18
1754 2185 0.321653 GGGACCACAGATTTGCGTCT 60.322 55.000 0.00 0.00 31.12 4.18
1855 2294 4.402528 ACGCATGCGCCTTACCCA 62.403 61.111 38.15 0.00 44.19 4.51
1861 2300 2.202756 GCGCCTTACCCAGTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1872 2311 1.680555 CCCAGTCTCGAGTCTACAGCT 60.681 57.143 13.13 0.00 0.00 4.24
1942 2381 3.256136 CCGGACTATAGAGAACCATGGAC 59.744 52.174 21.47 12.11 0.00 4.02
1970 2409 0.419865 TCCTGGGGGAGATGTAACCA 59.580 55.000 0.00 0.00 36.57 3.67
1976 2415 5.124036 TGGGGGAGATGTAACCAAAATAG 57.876 43.478 0.00 0.00 0.00 1.73
2038 2477 6.587651 CGACATGATGCACATATCTTGTAAG 58.412 40.000 0.00 2.31 42.21 2.34
2065 2504 4.582701 TTTTATGAAGTGCTGGTTGGTG 57.417 40.909 0.00 0.00 0.00 4.17
2066 2505 3.500448 TTATGAAGTGCTGGTTGGTGA 57.500 42.857 0.00 0.00 0.00 4.02
2072 2512 2.282462 GCTGGTTGGTGAGTGGGG 60.282 66.667 0.00 0.00 0.00 4.96
2073 2513 2.282462 CTGGTTGGTGAGTGGGGC 60.282 66.667 0.00 0.00 0.00 5.80
2076 2516 2.194597 GTTGGTGAGTGGGGCACA 59.805 61.111 0.00 0.00 37.99 4.57
2105 2545 5.069119 GGAATTTCAAGGACCAACTTTCTGT 59.931 40.000 0.00 0.00 0.00 3.41
2110 2550 2.930826 GGACCAACTTTCTGTCCTCA 57.069 50.000 0.00 0.00 44.17 3.86
2138 2579 0.179065 TGAAGCCATGCGATCTCCTG 60.179 55.000 0.00 0.00 0.00 3.86
2193 2634 1.739466 GGGGGACGAACGAAATAAACC 59.261 52.381 0.14 0.00 0.00 3.27
2194 2635 1.739466 GGGGACGAACGAAATAAACCC 59.261 52.381 0.14 0.00 35.80 4.11
2195 2636 1.394572 GGGACGAACGAAATAAACCCG 59.605 52.381 0.14 0.00 0.00 5.28
2196 2637 1.394572 GGACGAACGAAATAAACCCGG 59.605 52.381 0.00 0.00 0.00 5.73
2197 2638 1.394572 GACGAACGAAATAAACCCGGG 59.605 52.381 22.25 22.25 0.00 5.73
2198 2639 0.097499 CGAACGAAATAAACCCGGGC 59.903 55.000 24.08 0.00 0.00 6.13
2199 2640 1.166989 GAACGAAATAAACCCGGGCA 58.833 50.000 24.08 6.42 0.00 5.36
2200 2641 1.746787 GAACGAAATAAACCCGGGCAT 59.253 47.619 24.08 12.83 0.00 4.40
2201 2642 1.099689 ACGAAATAAACCCGGGCATG 58.900 50.000 24.08 4.34 0.00 4.06
2202 2643 0.383949 CGAAATAAACCCGGGCATGG 59.616 55.000 24.08 0.00 0.00 3.66
2203 2644 1.770294 GAAATAAACCCGGGCATGGA 58.230 50.000 24.08 1.18 0.00 3.41
2204 2645 1.407618 GAAATAAACCCGGGCATGGAC 59.592 52.381 24.08 3.08 0.00 4.02
2205 2646 0.333312 AATAAACCCGGGCATGGACA 59.667 50.000 24.08 0.00 0.00 4.02
2206 2647 0.106719 ATAAACCCGGGCATGGACAG 60.107 55.000 24.08 0.00 0.00 3.51
2207 2648 2.830186 TAAACCCGGGCATGGACAGC 62.830 60.000 24.08 0.00 0.00 4.40
2220 2661 4.589675 ACAGCCCGGCCCGAAAAA 62.590 61.111 3.71 0.00 0.00 1.94
2221 2662 4.050934 CAGCCCGGCCCGAAAAAC 62.051 66.667 3.71 0.00 0.00 2.43
2230 2671 3.370231 CCGAAAAACCCGGGCCAG 61.370 66.667 24.08 0.00 43.05 4.85
2231 2672 3.370231 CGAAAAACCCGGGCCAGG 61.370 66.667 24.08 16.13 0.00 4.45
2232 2673 3.691342 GAAAAACCCGGGCCAGGC 61.691 66.667 24.08 1.26 0.00 4.85
2249 2690 2.671070 CCAGGTCGGGCTTGACAT 59.329 61.111 11.44 2.82 40.72 3.06
2250 2691 1.002134 CCAGGTCGGGCTTGACATT 60.002 57.895 11.44 0.00 40.72 2.71
2251 2692 0.609131 CCAGGTCGGGCTTGACATTT 60.609 55.000 11.44 0.00 40.72 2.32
2252 2693 0.523072 CAGGTCGGGCTTGACATTTG 59.477 55.000 11.44 4.44 40.72 2.32
2253 2694 0.609131 AGGTCGGGCTTGACATTTGG 60.609 55.000 11.44 0.00 40.72 3.28
2254 2695 1.595093 GGTCGGGCTTGACATTTGGG 61.595 60.000 11.44 0.00 40.72 4.12
2255 2696 1.976474 TCGGGCTTGACATTTGGGC 60.976 57.895 0.00 0.00 0.00 5.36
2256 2697 2.981302 GGGCTTGACATTTGGGCC 59.019 61.111 0.00 0.00 41.80 5.80
2257 2698 2.573340 GGCTTGACATTTGGGCCG 59.427 61.111 0.00 0.00 33.30 6.13
2258 2699 2.573340 GCTTGACATTTGGGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
2259 2700 3.005540 GCTTGACATTTGGGCCGGG 62.006 63.158 2.18 0.00 0.00 5.73
2260 2701 2.994417 TTGACATTTGGGCCGGGC 60.994 61.111 22.00 22.00 0.00 6.13
2261 2702 3.521765 TTGACATTTGGGCCGGGCT 62.522 57.895 28.80 6.40 0.00 5.19
2262 2703 3.140814 GACATTTGGGCCGGGCTC 61.141 66.667 28.80 16.93 0.00 4.70
2273 2714 2.983592 CGGGCTCGGGCTTTGTTT 60.984 61.111 7.48 0.00 38.73 2.83
2274 2715 2.561037 CGGGCTCGGGCTTTGTTTT 61.561 57.895 7.48 0.00 38.73 2.43
2275 2716 1.006220 GGGCTCGGGCTTTGTTTTG 60.006 57.895 7.48 0.00 38.73 2.44
2276 2717 1.664649 GGCTCGGGCTTTGTTTTGC 60.665 57.895 7.48 0.00 38.73 3.68
2277 2718 1.067250 GCTCGGGCTTTGTTTTGCA 59.933 52.632 0.00 0.00 35.22 4.08
2278 2719 0.940991 GCTCGGGCTTTGTTTTGCAG 60.941 55.000 0.00 0.00 35.22 4.41
2279 2720 0.940991 CTCGGGCTTTGTTTTGCAGC 60.941 55.000 0.00 0.00 0.00 5.25
2280 2721 1.955663 CGGGCTTTGTTTTGCAGCC 60.956 57.895 2.37 2.37 44.31 4.85
2281 2722 4.047834 GGCTTTGTTTTGCAGCCC 57.952 55.556 0.00 0.00 39.57 5.19
2282 2723 1.955663 GGCTTTGTTTTGCAGCCCG 60.956 57.895 0.00 0.00 39.57 6.13
2283 2724 1.067250 GCTTTGTTTTGCAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
2284 2725 0.529555 GCTTTGTTTTGCAGCCCGAA 60.530 50.000 0.00 0.00 0.00 4.30
2285 2726 1.933247 CTTTGTTTTGCAGCCCGAAA 58.067 45.000 0.00 0.00 0.00 3.46
2286 2727 1.860326 CTTTGTTTTGCAGCCCGAAAG 59.140 47.619 0.00 0.00 0.00 2.62
2287 2728 1.107114 TTGTTTTGCAGCCCGAAAGA 58.893 45.000 0.00 0.00 0.00 2.52
2288 2729 1.327303 TGTTTTGCAGCCCGAAAGAT 58.673 45.000 0.00 0.00 0.00 2.40
2289 2730 2.509569 TGTTTTGCAGCCCGAAAGATA 58.490 42.857 0.00 0.00 0.00 1.98
2290 2731 2.487762 TGTTTTGCAGCCCGAAAGATAG 59.512 45.455 0.00 0.00 0.00 2.08
2291 2732 2.488153 GTTTTGCAGCCCGAAAGATAGT 59.512 45.455 0.00 0.00 0.00 2.12
2292 2733 2.489938 TTGCAGCCCGAAAGATAGTT 57.510 45.000 0.00 0.00 0.00 2.24
2293 2734 2.024176 TGCAGCCCGAAAGATAGTTC 57.976 50.000 0.00 0.00 0.00 3.01
2299 2740 3.752796 CGAAAGATAGTTCGGGCCA 57.247 52.632 4.39 0.00 45.21 5.36
2300 2741 1.571919 CGAAAGATAGTTCGGGCCAG 58.428 55.000 4.39 0.00 45.21 4.85
2301 2742 1.806623 CGAAAGATAGTTCGGGCCAGG 60.807 57.143 4.39 0.00 45.21 4.45
2302 2743 0.107165 AAAGATAGTTCGGGCCAGGC 60.107 55.000 4.39 1.26 0.00 4.85
2303 2744 0.983378 AAGATAGTTCGGGCCAGGCT 60.983 55.000 12.43 5.58 0.00 4.58
2304 2745 1.069935 GATAGTTCGGGCCAGGCTC 59.930 63.158 12.43 6.22 0.00 4.70
2314 2755 4.986467 CCAGGCTCGGGCTTTATT 57.014 55.556 7.48 0.00 35.88 1.40
2315 2756 3.191182 CCAGGCTCGGGCTTTATTT 57.809 52.632 7.48 0.00 35.88 1.40
2316 2757 1.474330 CCAGGCTCGGGCTTTATTTT 58.526 50.000 7.48 0.00 35.88 1.82
2317 2758 1.405463 CCAGGCTCGGGCTTTATTTTC 59.595 52.381 7.48 0.00 35.88 2.29
2318 2759 1.405463 CAGGCTCGGGCTTTATTTTCC 59.595 52.381 7.48 0.00 35.88 3.13
2319 2760 1.005450 AGGCTCGGGCTTTATTTTCCA 59.995 47.619 7.48 0.00 33.67 3.53
2320 2761 1.405463 GGCTCGGGCTTTATTTTCCAG 59.595 52.381 7.48 0.00 38.73 3.86
2321 2762 1.202302 GCTCGGGCTTTATTTTCCAGC 60.202 52.381 0.00 0.00 35.22 4.85
2325 2766 1.470051 GGCTTTATTTTCCAGCCCGA 58.530 50.000 0.00 0.00 46.55 5.14
2326 2767 1.822371 GGCTTTATTTTCCAGCCCGAA 59.178 47.619 0.00 0.00 46.55 4.30
2327 2768 2.232696 GGCTTTATTTTCCAGCCCGAAA 59.767 45.455 0.00 0.00 46.55 3.46
2328 2769 3.511699 GCTTTATTTTCCAGCCCGAAAG 58.488 45.455 0.00 0.00 33.46 2.62
2329 2770 3.192633 GCTTTATTTTCCAGCCCGAAAGA 59.807 43.478 0.00 0.00 33.46 2.52
2330 2771 4.142160 GCTTTATTTTCCAGCCCGAAAGAT 60.142 41.667 0.00 0.00 33.46 2.40
2331 2772 5.067283 GCTTTATTTTCCAGCCCGAAAGATA 59.933 40.000 0.00 0.00 33.46 1.98
2332 2773 6.693315 TTTATTTTCCAGCCCGAAAGATAG 57.307 37.500 0.00 0.00 33.46 2.08
2333 2774 3.713826 TTTTCCAGCCCGAAAGATAGT 57.286 42.857 0.00 0.00 33.46 2.12
2334 2775 3.713826 TTTCCAGCCCGAAAGATAGTT 57.286 42.857 0.00 0.00 0.00 2.24
2335 2776 2.981859 TCCAGCCCGAAAGATAGTTC 57.018 50.000 0.00 0.00 0.00 3.01
2341 2782 2.589890 CGAAAGATAGTTCGGGCCG 58.410 57.895 22.51 22.51 45.21 6.13
2342 2783 0.179119 CGAAAGATAGTTCGGGCCGT 60.179 55.000 27.32 9.60 45.21 5.68
2343 2784 1.287425 GAAAGATAGTTCGGGCCGTG 58.713 55.000 27.32 0.00 0.00 4.94
2344 2785 0.743345 AAAGATAGTTCGGGCCGTGC 60.743 55.000 27.32 19.12 0.00 5.34
2345 2786 1.614241 AAGATAGTTCGGGCCGTGCT 61.614 55.000 27.32 24.71 0.00 4.40
2346 2787 1.591863 GATAGTTCGGGCCGTGCTC 60.592 63.158 27.32 14.16 0.00 4.26
2347 2788 2.017559 GATAGTTCGGGCCGTGCTCT 62.018 60.000 27.32 19.99 0.00 4.09
2348 2789 2.298158 ATAGTTCGGGCCGTGCTCTG 62.298 60.000 27.32 0.00 0.00 3.35
2357 2798 3.768633 CCGTGCTCTGGCTTCTATT 57.231 52.632 0.00 0.00 39.59 1.73
2358 2799 2.029838 CCGTGCTCTGGCTTCTATTT 57.970 50.000 0.00 0.00 39.59 1.40
2359 2800 2.359900 CCGTGCTCTGGCTTCTATTTT 58.640 47.619 0.00 0.00 39.59 1.82
2360 2801 2.749621 CCGTGCTCTGGCTTCTATTTTT 59.250 45.455 0.00 0.00 39.59 1.94
2361 2802 3.181506 CCGTGCTCTGGCTTCTATTTTTC 60.182 47.826 0.00 0.00 39.59 2.29
2362 2803 3.686726 CGTGCTCTGGCTTCTATTTTTCT 59.313 43.478 0.00 0.00 39.59 2.52
2363 2804 4.436584 CGTGCTCTGGCTTCTATTTTTCTG 60.437 45.833 0.00 0.00 39.59 3.02
2364 2805 4.697352 GTGCTCTGGCTTCTATTTTTCTGA 59.303 41.667 0.00 0.00 39.59 3.27
2365 2806 5.356470 GTGCTCTGGCTTCTATTTTTCTGAT 59.644 40.000 0.00 0.00 39.59 2.90
2366 2807 5.948162 TGCTCTGGCTTCTATTTTTCTGATT 59.052 36.000 0.00 0.00 39.59 2.57
2367 2808 6.435277 TGCTCTGGCTTCTATTTTTCTGATTT 59.565 34.615 0.00 0.00 39.59 2.17
2368 2809 7.039504 TGCTCTGGCTTCTATTTTTCTGATTTT 60.040 33.333 0.00 0.00 39.59 1.82
2369 2810 7.487509 GCTCTGGCTTCTATTTTTCTGATTTTC 59.512 37.037 0.00 0.00 35.22 2.29
2370 2811 7.530010 TCTGGCTTCTATTTTTCTGATTTTCG 58.470 34.615 0.00 0.00 0.00 3.46
2371 2812 6.620678 TGGCTTCTATTTTTCTGATTTTCGG 58.379 36.000 0.00 0.00 0.00 4.30
2372 2813 6.036470 GGCTTCTATTTTTCTGATTTTCGGG 58.964 40.000 0.00 0.00 0.00 5.14
2373 2814 5.516696 GCTTCTATTTTTCTGATTTTCGGGC 59.483 40.000 0.00 0.00 0.00 6.13
2374 2815 5.576447 TCTATTTTTCTGATTTTCGGGCC 57.424 39.130 0.00 0.00 0.00 5.80
2375 2816 2.715737 TTTTTCTGATTTTCGGGCCG 57.284 45.000 22.51 22.51 0.00 6.13
2376 2817 0.885196 TTTTCTGATTTTCGGGCCGG 59.115 50.000 27.98 8.04 0.00 6.13
2377 2818 0.963355 TTTCTGATTTTCGGGCCGGG 60.963 55.000 27.98 7.82 0.00 5.73
2378 2819 3.518068 CTGATTTTCGGGCCGGGC 61.518 66.667 27.98 22.00 0.00 6.13
2379 2820 3.995506 CTGATTTTCGGGCCGGGCT 62.996 63.158 28.80 6.40 0.00 5.19
2380 2821 2.754254 GATTTTCGGGCCGGGCTT 60.754 61.111 28.80 9.19 0.00 4.35
2381 2822 2.283604 ATTTTCGGGCCGGGCTTT 60.284 55.556 28.80 4.71 0.00 3.51
2382 2823 2.279502 GATTTTCGGGCCGGGCTTTC 62.280 60.000 28.80 13.03 0.00 2.62
2393 2834 4.717313 GGCTTTCGGGCTTCGGGT 62.717 66.667 0.75 0.00 39.77 5.28
2394 2835 3.125573 GCTTTCGGGCTTCGGGTC 61.126 66.667 0.75 0.00 39.77 4.46
2395 2836 2.345991 CTTTCGGGCTTCGGGTCA 59.654 61.111 0.75 0.00 39.77 4.02
2396 2837 1.741770 CTTTCGGGCTTCGGGTCAG 60.742 63.158 0.75 0.00 39.77 3.51
2397 2838 3.248446 TTTCGGGCTTCGGGTCAGG 62.248 63.158 0.75 0.00 39.77 3.86
2400 2841 4.035102 GGGCTTCGGGTCAGGCTT 62.035 66.667 0.00 0.00 37.02 4.35
2401 2842 2.666098 GGGCTTCGGGTCAGGCTTA 61.666 63.158 0.00 0.00 37.02 3.09
2402 2843 1.449778 GGCTTCGGGTCAGGCTTAC 60.450 63.158 0.00 0.00 34.00 2.34
2403 2844 1.295423 GCTTCGGGTCAGGCTTACA 59.705 57.895 0.68 0.00 0.00 2.41
2404 2845 1.019805 GCTTCGGGTCAGGCTTACAC 61.020 60.000 0.68 0.00 0.00 2.90
2405 2846 0.736325 CTTCGGGTCAGGCTTACACG 60.736 60.000 17.00 17.00 45.03 4.49
2406 2847 1.466025 TTCGGGTCAGGCTTACACGT 61.466 55.000 21.52 0.00 44.06 4.49
2407 2848 1.736645 CGGGTCAGGCTTACACGTG 60.737 63.158 15.05 15.48 38.91 4.49
2408 2849 2.033194 GGGTCAGGCTTACACGTGC 61.033 63.158 17.22 0.18 0.00 5.34
2409 2850 2.380410 GGTCAGGCTTACACGTGCG 61.380 63.158 17.22 5.55 0.00 5.34
2410 2851 2.736995 TCAGGCTTACACGTGCGC 60.737 61.111 17.22 15.56 0.00 6.09
2411 2852 4.134187 CAGGCTTACACGTGCGCG 62.134 66.667 19.78 19.78 44.93 6.86
2435 2876 3.579066 AAAAACAACATTCGGCCCG 57.421 47.368 0.00 0.00 0.00 6.13
2436 2877 0.032815 AAAAACAACATTCGGCCCGG 59.967 50.000 1.90 0.00 0.00 5.73
2437 2878 1.811645 AAAACAACATTCGGCCCGGG 61.812 55.000 19.09 19.09 0.00 5.73
2440 2881 4.440829 AACATTCGGCCCGGGCAT 62.441 61.111 44.46 28.33 44.11 4.40
2441 2882 3.955543 AACATTCGGCCCGGGCATT 62.956 57.895 44.46 24.82 44.11 3.56
2442 2883 3.595758 CATTCGGCCCGGGCATTC 61.596 66.667 44.46 27.55 44.11 2.67
2455 2896 3.518068 CATTCGGGCCGGGCTTTC 61.518 66.667 28.80 10.53 0.00 2.62
2468 2909 2.359975 CTTTCGGGCTTCGGGCTT 60.360 61.111 1.83 0.00 41.46 4.35
2469 2910 2.671619 TTTCGGGCTTCGGGCTTG 60.672 61.111 1.83 0.00 41.46 4.01
2470 2911 3.185299 TTTCGGGCTTCGGGCTTGA 62.185 57.895 1.83 0.00 41.46 3.02
2471 2912 2.478335 TTTCGGGCTTCGGGCTTGAT 62.478 55.000 1.83 0.00 41.46 2.57
2472 2913 2.438434 CGGGCTTCGGGCTTGATT 60.438 61.111 1.83 0.00 41.46 2.57
2473 2914 2.046285 CGGGCTTCGGGCTTGATTT 61.046 57.895 1.83 0.00 41.46 2.17
2474 2915 1.809869 GGGCTTCGGGCTTGATTTC 59.190 57.895 1.83 0.00 41.46 2.17
2475 2916 0.965363 GGGCTTCGGGCTTGATTTCA 60.965 55.000 1.83 0.00 41.46 2.69
2476 2917 0.453390 GGCTTCGGGCTTGATTTCAG 59.547 55.000 1.83 0.00 41.46 3.02
2477 2918 0.453390 GCTTCGGGCTTGATTTCAGG 59.547 55.000 0.00 0.00 38.06 3.86
2478 2919 0.453390 CTTCGGGCTTGATTTCAGGC 59.547 55.000 6.14 6.14 46.64 4.85
2482 2923 3.200522 GCTTGATTTCAGGCCGGG 58.799 61.111 2.18 0.00 42.31 5.73
2483 2924 3.068729 GCTTGATTTCAGGCCGGGC 62.069 63.158 22.67 22.67 42.31 6.13
2484 2925 1.379044 CTTGATTTCAGGCCGGGCT 60.379 57.895 27.45 27.45 0.00 5.19
2485 2926 1.378514 TTGATTTCAGGCCGGGCTC 60.379 57.895 30.43 17.57 0.00 4.70
2486 2927 2.897350 GATTTCAGGCCGGGCTCG 60.897 66.667 30.43 22.69 0.00 5.03
2496 2937 4.371975 CGGGCTCGGACTTCAAAA 57.628 55.556 0.00 0.00 0.00 2.44
2497 2938 1.866925 CGGGCTCGGACTTCAAAAC 59.133 57.895 0.00 0.00 0.00 2.43
2498 2939 0.882927 CGGGCTCGGACTTCAAAACA 60.883 55.000 0.00 0.00 0.00 2.83
2499 2940 0.875059 GGGCTCGGACTTCAAAACAG 59.125 55.000 0.00 0.00 0.00 3.16
2500 2941 0.875059 GGCTCGGACTTCAAAACAGG 59.125 55.000 0.00 0.00 0.00 4.00
2501 2942 0.875059 GCTCGGACTTCAAAACAGGG 59.125 55.000 0.00 0.00 0.00 4.45
2502 2943 1.542547 GCTCGGACTTCAAAACAGGGA 60.543 52.381 0.00 0.00 0.00 4.20
2503 2944 2.417719 CTCGGACTTCAAAACAGGGAG 58.582 52.381 0.00 0.00 0.00 4.30
2504 2945 1.766496 TCGGACTTCAAAACAGGGAGT 59.234 47.619 0.00 0.00 0.00 3.85
2505 2946 2.967201 TCGGACTTCAAAACAGGGAGTA 59.033 45.455 0.00 0.00 0.00 2.59
2506 2947 3.581332 TCGGACTTCAAAACAGGGAGTAT 59.419 43.478 0.00 0.00 0.00 2.12
2507 2948 4.041198 TCGGACTTCAAAACAGGGAGTATT 59.959 41.667 0.00 0.00 0.00 1.89
2508 2949 4.760204 CGGACTTCAAAACAGGGAGTATTT 59.240 41.667 0.00 0.00 0.00 1.40
2509 2950 5.106673 CGGACTTCAAAACAGGGAGTATTTC 60.107 44.000 0.00 0.00 0.00 2.17
2510 2951 5.106673 GGACTTCAAAACAGGGAGTATTTCG 60.107 44.000 0.00 0.00 0.00 3.46
2511 2952 4.760204 ACTTCAAAACAGGGAGTATTTCGG 59.240 41.667 0.00 0.00 0.00 4.30
2512 2953 3.681593 TCAAAACAGGGAGTATTTCGGG 58.318 45.455 0.00 0.00 0.00 5.14
2513 2954 2.124277 AAACAGGGAGTATTTCGGGC 57.876 50.000 0.00 0.00 0.00 6.13
2514 2955 1.286248 AACAGGGAGTATTTCGGGCT 58.714 50.000 0.00 0.00 0.00 5.19
2515 2956 1.286248 ACAGGGAGTATTTCGGGCTT 58.714 50.000 0.00 0.00 0.00 4.35
2516 2957 1.633945 ACAGGGAGTATTTCGGGCTTT 59.366 47.619 0.00 0.00 0.00 3.51
2517 2958 2.841881 ACAGGGAGTATTTCGGGCTTTA 59.158 45.455 0.00 0.00 0.00 1.85
2518 2959 3.118371 ACAGGGAGTATTTCGGGCTTTAG 60.118 47.826 0.00 0.00 0.00 1.85
2519 2960 2.438392 AGGGAGTATTTCGGGCTTTAGG 59.562 50.000 0.00 0.00 0.00 2.69
2520 2961 2.219458 GGAGTATTTCGGGCTTTAGGC 58.781 52.381 0.00 0.00 40.90 3.93
2529 2970 2.514824 GCTTTAGGCCGGGCTCAG 60.515 66.667 36.44 29.76 34.27 3.35
2530 2971 2.190578 CTTTAGGCCGGGCTCAGG 59.809 66.667 36.44 21.11 0.00 3.86
2546 2987 3.795688 TCAGGCTTGAGAAATGAAGGT 57.204 42.857 0.00 0.00 0.00 3.50
2547 2988 3.679389 TCAGGCTTGAGAAATGAAGGTC 58.321 45.455 0.00 0.00 0.00 3.85
2548 2989 2.417933 CAGGCTTGAGAAATGAAGGTCG 59.582 50.000 0.00 0.00 0.00 4.79
2549 2990 1.740025 GGCTTGAGAAATGAAGGTCGG 59.260 52.381 0.00 0.00 0.00 4.79
2550 2991 1.740025 GCTTGAGAAATGAAGGTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
2551 2992 1.740025 CTTGAGAAATGAAGGTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
2552 2993 0.984230 TGAGAAATGAAGGTCGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
2553 2994 1.351017 TGAGAAATGAAGGTCGGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
2554 2995 2.224769 TGAGAAATGAAGGTCGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
2555 2996 2.820197 GAGAAATGAAGGTCGGGCTTTT 59.180 45.455 0.00 0.00 0.00 2.27
2556 2997 4.007659 GAGAAATGAAGGTCGGGCTTTTA 58.992 43.478 0.00 0.00 0.00 1.52
2557 2998 3.756963 AGAAATGAAGGTCGGGCTTTTAC 59.243 43.478 0.00 0.00 0.00 2.01
2558 2999 2.871096 ATGAAGGTCGGGCTTTTACA 57.129 45.000 0.00 0.00 0.00 2.41
2559 3000 2.642154 TGAAGGTCGGGCTTTTACAA 57.358 45.000 0.00 0.00 0.00 2.41
2560 3001 2.500229 TGAAGGTCGGGCTTTTACAAG 58.500 47.619 0.00 0.00 0.00 3.16
2570 3011 1.909700 CTTTTACAAGCCCAGCCTGA 58.090 50.000 0.00 0.00 0.00 3.86
2571 3012 2.238521 CTTTTACAAGCCCAGCCTGAA 58.761 47.619 0.00 0.00 0.00 3.02
2572 3013 2.373335 TTTACAAGCCCAGCCTGAAA 57.627 45.000 0.00 0.00 0.00 2.69
2573 3014 2.603075 TTACAAGCCCAGCCTGAAAT 57.397 45.000 0.00 0.00 0.00 2.17
2574 3015 2.128771 TACAAGCCCAGCCTGAAATC 57.871 50.000 0.00 0.00 0.00 2.17
2575 3016 0.613012 ACAAGCCCAGCCTGAAATCC 60.613 55.000 0.00 0.00 0.00 3.01
2576 3017 1.379044 AAGCCCAGCCTGAAATCCG 60.379 57.895 0.00 0.00 0.00 4.18
2577 3018 2.830370 GCCCAGCCTGAAATCCGG 60.830 66.667 0.00 0.00 0.00 5.14
2578 3019 2.830370 CCCAGCCTGAAATCCGGC 60.830 66.667 7.69 7.69 46.65 6.13
2602 3043 3.281395 CGACGTTTGCCCGGGTTT 61.281 61.111 24.63 0.00 0.00 3.27
2603 3044 1.960250 CGACGTTTGCCCGGGTTTA 60.960 57.895 24.63 6.20 0.00 2.01
2604 3045 1.871077 GACGTTTGCCCGGGTTTAG 59.129 57.895 24.63 12.72 0.00 1.85
2605 3046 1.579964 GACGTTTGCCCGGGTTTAGG 61.580 60.000 24.63 14.80 0.00 2.69
2606 3047 1.302671 CGTTTGCCCGGGTTTAGGA 60.303 57.895 24.63 0.00 0.00 2.94
2607 3048 1.579964 CGTTTGCCCGGGTTTAGGAC 61.580 60.000 24.63 11.45 0.00 3.85
2608 3049 1.302671 TTTGCCCGGGTTTAGGACG 60.303 57.895 24.63 0.00 0.00 4.79
2609 3050 1.766625 TTTGCCCGGGTTTAGGACGA 61.767 55.000 24.63 0.00 0.00 4.20
2610 3051 1.766625 TTGCCCGGGTTTAGGACGAA 61.767 55.000 24.63 0.00 0.00 3.85
2611 3052 1.003476 GCCCGGGTTTAGGACGAAA 60.003 57.895 24.63 0.00 0.00 3.46
2612 3053 1.022982 GCCCGGGTTTAGGACGAAAG 61.023 60.000 24.63 0.00 0.00 2.62
2613 3054 1.022982 CCCGGGTTTAGGACGAAAGC 61.023 60.000 14.18 0.00 36.33 3.51
2614 3055 0.036671 CCGGGTTTAGGACGAAAGCT 60.037 55.000 0.00 0.00 37.07 3.74
2615 3056 1.076332 CGGGTTTAGGACGAAAGCTG 58.924 55.000 6.96 4.74 37.07 4.24
2616 3057 1.450025 GGGTTTAGGACGAAAGCTGG 58.550 55.000 6.96 0.00 37.07 4.85
2617 3058 1.450025 GGTTTAGGACGAAAGCTGGG 58.550 55.000 0.00 0.00 34.65 4.45
2624 3065 2.047655 CGAAAGCTGGGGCGTGTA 60.048 61.111 0.00 0.00 44.37 2.90
2644 3085 2.123939 CTGTGGTGTGTGGGCCAA 60.124 61.111 8.40 0.00 36.41 4.52
2646 3087 3.223589 GTGGTGTGTGGGCCAACC 61.224 66.667 17.35 17.35 36.41 3.77
2674 3115 1.620413 GCACGTACCTGCGTACCAAC 61.620 60.000 0.98 0.00 43.83 3.77
2701 3142 1.376037 CCGTCCCTCTTTCTGGCAC 60.376 63.158 0.00 0.00 0.00 5.01
2733 3174 0.382873 CAATATGCATGTGCGGCAGT 59.617 50.000 10.16 0.00 45.68 4.40
2738 3179 3.041701 CATGTGCGGCAGTGGTTT 58.958 55.556 1.18 0.00 0.00 3.27
2741 3182 2.027460 GTGCGGCAGTGGTTTTGG 59.973 61.111 1.18 0.00 0.00 3.28
2760 3201 1.535896 GGTCTTGTCTTTCGGCTTTCC 59.464 52.381 0.00 0.00 0.00 3.13
2772 3213 1.369839 GGCTTTCCGCTAGCTTGACC 61.370 60.000 13.93 2.96 38.67 4.02
2774 3215 0.108804 CTTTCCGCTAGCTTGACCGA 60.109 55.000 13.93 0.00 0.00 4.69
2789 3230 2.106683 CCGACGGGGCACAAGATTC 61.107 63.158 5.81 0.00 0.00 2.52
2800 3241 3.365820 GGCACAAGATTCGCTGATTTTTG 59.634 43.478 0.00 0.00 0.00 2.44
2801 3242 3.365820 GCACAAGATTCGCTGATTTTTGG 59.634 43.478 7.83 0.00 0.00 3.28
2802 3243 4.549458 CACAAGATTCGCTGATTTTTGGT 58.451 39.130 7.83 0.00 0.00 3.67
2806 3248 4.549458 AGATTCGCTGATTTTTGGTGTTG 58.451 39.130 0.00 0.00 0.00 3.33
2808 3250 1.139163 CGCTGATTTTTGGTGTTGCC 58.861 50.000 0.00 0.00 37.90 4.52
2822 3264 1.959985 TGTTGCCGTGGTGAATTGAAT 59.040 42.857 0.00 0.00 0.00 2.57
2824 3266 0.243365 TGCCGTGGTGAATTGAATGC 59.757 50.000 0.00 0.00 0.00 3.56
2827 3269 1.202065 CCGTGGTGAATTGAATGCTCG 60.202 52.381 0.00 0.00 0.00 5.03
2831 3273 2.743664 TGGTGAATTGAATGCTCGACTG 59.256 45.455 0.00 0.00 0.00 3.51
2835 3277 4.848299 GTGAATTGAATGCTCGACTGAAAC 59.152 41.667 0.00 0.00 0.00 2.78
2839 3281 2.224281 TGAATGCTCGACTGAAACCTGT 60.224 45.455 0.00 0.00 0.00 4.00
2842 3284 0.033504 GCTCGACTGAAACCTGTCCA 59.966 55.000 0.00 0.00 31.34 4.02
2843 3285 1.338200 GCTCGACTGAAACCTGTCCAT 60.338 52.381 0.00 0.00 31.34 3.41
2846 3288 1.726791 CGACTGAAACCTGTCCATTCG 59.273 52.381 0.00 0.00 31.34 3.34
2853 3295 3.694364 CCTGTCCATTCGGATCAGG 57.306 57.895 12.59 12.59 45.74 3.86
2860 3302 1.878088 CCATTCGGATCAGGAATGCTG 59.122 52.381 23.29 13.11 45.91 4.41
2866 3308 2.806818 CGGATCAGGAATGCTGATTCAG 59.193 50.000 20.61 9.40 41.13 3.02
2884 3326 1.136141 CAGCAGCGAATTCACAGTGAC 60.136 52.381 1.52 0.00 0.00 3.67
2888 3330 0.438830 GCGAATTCACAGTGACCGAC 59.561 55.000 18.23 9.23 0.00 4.79
2898 3340 0.033504 AGTGACCGACTGCGATTTGT 59.966 50.000 0.00 0.00 40.82 2.83
2899 3341 1.271379 AGTGACCGACTGCGATTTGTA 59.729 47.619 0.00 0.00 40.82 2.41
2900 3342 1.389106 GTGACCGACTGCGATTTGTAC 59.611 52.381 0.00 0.00 40.82 2.90
2901 3343 1.000052 TGACCGACTGCGATTTGTACA 60.000 47.619 0.00 0.00 40.82 2.90
2902 3344 2.063266 GACCGACTGCGATTTGTACAA 58.937 47.619 3.59 3.59 40.82 2.41
2903 3345 2.671396 GACCGACTGCGATTTGTACAAT 59.329 45.455 9.56 0.00 40.82 2.71
2904 3346 3.071479 ACCGACTGCGATTTGTACAATT 58.929 40.909 9.56 5.86 40.82 2.32
2905 3347 3.500680 ACCGACTGCGATTTGTACAATTT 59.499 39.130 9.56 0.00 40.82 1.82
2906 3348 4.023536 ACCGACTGCGATTTGTACAATTTT 60.024 37.500 9.56 0.00 40.82 1.82
2907 3349 4.915085 CCGACTGCGATTTGTACAATTTTT 59.085 37.500 9.56 0.00 40.82 1.94
2908 3350 5.164196 CCGACTGCGATTTGTACAATTTTTG 60.164 40.000 9.56 3.21 40.82 2.44
2909 3351 5.398122 CGACTGCGATTTGTACAATTTTTGT 59.602 36.000 9.56 4.93 43.21 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 239 1.135859 GGCATGAGAAAGTTGTCAGCG 60.136 52.381 0.00 0.00 33.73 5.18
340 438 5.250982 AGGTTTAGGGTTTATCGTTTCAGG 58.749 41.667 0.00 0.00 0.00 3.86
492 590 1.419012 GAGGCCACATCATCCTCATCA 59.581 52.381 5.01 0.00 44.38 3.07
589 706 1.045911 GCTCCTACTCCCCCTCACTG 61.046 65.000 0.00 0.00 0.00 3.66
758 897 6.567602 AAAGCACTTCATTATAGAGGTCCT 57.432 37.500 0.00 0.00 0.00 3.85
801 940 6.238293 GGGTATTCTCGTCCTAAATTTTTCGG 60.238 42.308 0.00 0.00 0.00 4.30
867 1010 6.239743 CCTTTTTAAGCCCAAGGGTATTTTCA 60.240 38.462 7.05 0.00 34.47 2.69
943 1087 9.174166 GGGAGATTTTACGGTGCATTATAATAT 57.826 33.333 0.00 0.00 0.00 1.28
976 1120 1.314730 TCAGATCGCACGCCACTATA 58.685 50.000 0.00 0.00 0.00 1.31
977 1121 0.676184 ATCAGATCGCACGCCACTAT 59.324 50.000 0.00 0.00 0.00 2.12
1010 1154 1.888512 GCTTTGTTGGCAGGAATCTGA 59.111 47.619 0.00 0.00 43.49 3.27
1107 1251 1.754234 GGCATGGCCGTCCTTCATT 60.754 57.895 8.35 0.00 39.62 2.57
1297 1442 2.743183 GCCACTCGTGATGAAGGCTTAT 60.743 50.000 0.00 0.00 42.00 1.73
1303 1448 0.247460 TCCTGCCACTCGTGATGAAG 59.753 55.000 0.00 0.00 0.00 3.02
1305 1450 1.591703 GTCCTGCCACTCGTGATGA 59.408 57.895 0.00 0.00 0.00 2.92
1352 1498 1.816835 GAATCCGGTTGGTTCTTTCCC 59.183 52.381 0.00 0.00 36.30 3.97
1397 1817 6.377712 ACCTACTCTCTTGTAATGTACTCACC 59.622 42.308 0.00 0.00 0.00 4.02
1574 2005 1.825105 ACCCCAGCTGGATATGTGAT 58.175 50.000 34.91 0.00 37.39 3.06
1588 2019 1.872197 GCAGCGCAAATGTTACCCCA 61.872 55.000 11.47 0.00 0.00 4.96
1627 2058 0.471617 CTCCCCACACATCTGGATCC 59.528 60.000 4.20 4.20 32.30 3.36
1669 2100 0.543410 TACCCTCCGCAAACCTCTCA 60.543 55.000 0.00 0.00 0.00 3.27
1702 2133 4.380678 GGAAATAACGTTGGCGAGTTTTTC 59.619 41.667 11.99 7.04 42.00 2.29
1720 2151 2.045340 CCCCAGCCGAACGGAAAT 60.045 61.111 17.63 0.00 37.50 2.17
1754 2185 1.042229 AGCAATGCAAAGTTCTGCCA 58.958 45.000 8.35 0.00 41.90 4.92
1855 2294 1.279558 TGGAGCTGTAGACTCGAGACT 59.720 52.381 21.68 21.12 34.87 3.24
1861 2300 1.402984 CCGTGTTGGAGCTGTAGACTC 60.403 57.143 0.00 0.00 42.00 3.36
1872 2311 2.631160 AATCTGTGAACCGTGTTGGA 57.369 45.000 0.00 0.00 42.00 3.53
1923 2362 3.890147 ACCGTCCATGGTTCTCTATAGTC 59.110 47.826 12.58 0.00 39.99 2.59
1928 2367 2.225382 TCACCGTCCATGGTTCTCTA 57.775 50.000 12.58 0.00 41.38 2.43
1942 2381 1.762522 CTCCCCCAGGATGATCACCG 61.763 65.000 0.00 0.00 42.93 4.94
1970 2409 8.904963 AGGGTCCATTATACATGATCCTATTTT 58.095 33.333 0.00 0.00 0.00 1.82
1976 2415 5.762179 TCAGGGTCCATTATACATGATCC 57.238 43.478 0.00 0.00 0.00 3.36
1991 2430 6.204688 TCGCATTTGATATAAACATCAGGGTC 59.795 38.462 0.00 0.00 36.34 4.46
2009 2448 4.517832 AGATATGTGCATCATGTCGCATTT 59.482 37.500 13.50 6.05 45.28 2.32
2012 2451 3.116079 AGATATGTGCATCATGTCGCA 57.884 42.857 15.11 7.56 45.28 5.10
2047 2486 2.371841 ACTCACCAACCAGCACTTCATA 59.628 45.455 0.00 0.00 0.00 2.15
2056 2495 2.282462 GCCCCACTCACCAACCAG 60.282 66.667 0.00 0.00 0.00 4.00
2072 2512 1.273327 CCTTGAAATTCCTGGGTGTGC 59.727 52.381 0.00 0.00 0.00 4.57
2073 2513 2.558359 GTCCTTGAAATTCCTGGGTGTG 59.442 50.000 0.00 0.00 0.00 3.82
2076 2516 1.786441 TGGTCCTTGAAATTCCTGGGT 59.214 47.619 0.00 0.00 0.00 4.51
2084 2524 4.584743 GGACAGAAAGTTGGTCCTTGAAAT 59.415 41.667 12.17 0.00 45.99 2.17
2105 2545 2.027285 TGGCTTCATCGAATTGTGAGGA 60.027 45.455 0.50 0.00 0.00 3.71
2108 2548 2.097954 GCATGGCTTCATCGAATTGTGA 59.902 45.455 0.00 0.00 0.00 3.58
2110 2550 1.064505 CGCATGGCTTCATCGAATTGT 59.935 47.619 0.00 0.00 0.00 2.71
2183 2624 0.383949 CCATGCCCGGGTTTATTTCG 59.616 55.000 24.63 2.06 0.00 3.46
2185 2626 1.272760 TGTCCATGCCCGGGTTTATTT 60.273 47.619 24.63 0.00 0.00 1.40
2186 2627 0.333312 TGTCCATGCCCGGGTTTATT 59.667 50.000 24.63 0.00 0.00 1.40
2187 2628 0.106719 CTGTCCATGCCCGGGTTTAT 60.107 55.000 24.63 11.82 0.00 1.40
2188 2629 1.301623 CTGTCCATGCCCGGGTTTA 59.698 57.895 24.63 9.73 0.00 2.01
2189 2630 2.035626 CTGTCCATGCCCGGGTTT 59.964 61.111 24.63 6.97 0.00 3.27
2190 2631 4.740822 GCTGTCCATGCCCGGGTT 62.741 66.667 24.63 7.40 0.00 4.11
2203 2644 4.589675 TTTTTCGGGCCGGGCTGT 62.590 61.111 33.53 0.00 0.00 4.40
2204 2645 4.050934 GTTTTTCGGGCCGGGCTG 62.051 66.667 30.31 30.31 0.00 4.85
2213 2654 3.370231 CTGGCCCGGGTTTTTCGG 61.370 66.667 24.63 8.26 46.43 4.30
2214 2655 3.370231 CCTGGCCCGGGTTTTTCG 61.370 66.667 24.63 4.88 0.00 3.46
2215 2656 3.691342 GCCTGGCCCGGGTTTTTC 61.691 66.667 24.63 4.05 31.34 2.29
2232 2673 0.609131 AAATGTCAAGCCCGACCTGG 60.609 55.000 0.00 0.00 34.88 4.45
2233 2674 0.523072 CAAATGTCAAGCCCGACCTG 59.477 55.000 0.97 0.00 34.88 4.00
2234 2675 0.609131 CCAAATGTCAAGCCCGACCT 60.609 55.000 0.97 0.00 34.88 3.85
2235 2676 1.595093 CCCAAATGTCAAGCCCGACC 61.595 60.000 0.97 0.00 34.88 4.79
2236 2677 1.883021 CCCAAATGTCAAGCCCGAC 59.117 57.895 0.00 0.00 36.40 4.79
2237 2678 1.976474 GCCCAAATGTCAAGCCCGA 60.976 57.895 0.00 0.00 0.00 5.14
2238 2679 2.573340 GCCCAAATGTCAAGCCCG 59.427 61.111 0.00 0.00 0.00 6.13
2239 2680 2.981302 GGCCCAAATGTCAAGCCC 59.019 61.111 0.00 0.00 37.66 5.19
2240 2681 2.573340 CGGCCCAAATGTCAAGCC 59.427 61.111 0.00 0.00 40.33 4.35
2241 2682 2.573340 CCGGCCCAAATGTCAAGC 59.427 61.111 0.00 0.00 0.00 4.01
2242 2683 3.005540 GCCCGGCCCAAATGTCAAG 62.006 63.158 0.00 0.00 0.00 3.02
2243 2684 2.994417 GCCCGGCCCAAATGTCAA 60.994 61.111 0.00 0.00 0.00 3.18
2244 2685 3.936772 GAGCCCGGCCCAAATGTCA 62.937 63.158 5.55 0.00 0.00 3.58
2245 2686 3.140814 GAGCCCGGCCCAAATGTC 61.141 66.667 5.55 0.00 0.00 3.06
2256 2697 2.561037 AAAACAAAGCCCGAGCCCG 61.561 57.895 0.00 0.00 41.25 6.13
2257 2698 1.006220 CAAAACAAAGCCCGAGCCC 60.006 57.895 0.00 0.00 41.25 5.19
2258 2699 1.664649 GCAAAACAAAGCCCGAGCC 60.665 57.895 0.00 0.00 41.25 4.70
2259 2700 0.940991 CTGCAAAACAAAGCCCGAGC 60.941 55.000 0.00 0.00 40.32 5.03
2260 2701 0.940991 GCTGCAAAACAAAGCCCGAG 60.941 55.000 0.00 0.00 0.00 4.63
2261 2702 1.067250 GCTGCAAAACAAAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
2262 2703 3.628958 GCTGCAAAACAAAGCCCG 58.371 55.556 0.00 0.00 0.00 6.13
2265 2706 0.529555 TTCGGGCTGCAAAACAAAGC 60.530 50.000 0.50 0.00 36.17 3.51
2266 2707 1.860326 CTTTCGGGCTGCAAAACAAAG 59.140 47.619 0.50 0.00 0.00 2.77
2267 2708 1.478510 TCTTTCGGGCTGCAAAACAAA 59.521 42.857 0.50 0.00 0.00 2.83
2268 2709 1.107114 TCTTTCGGGCTGCAAAACAA 58.893 45.000 0.50 0.00 0.00 2.83
2269 2710 1.327303 ATCTTTCGGGCTGCAAAACA 58.673 45.000 0.50 0.00 0.00 2.83
2270 2711 2.488153 ACTATCTTTCGGGCTGCAAAAC 59.512 45.455 0.50 0.00 0.00 2.43
2271 2712 2.790433 ACTATCTTTCGGGCTGCAAAA 58.210 42.857 0.50 0.00 0.00 2.44
2272 2713 2.489938 ACTATCTTTCGGGCTGCAAA 57.510 45.000 0.50 0.00 0.00 3.68
2273 2714 2.356135 GAACTATCTTTCGGGCTGCAA 58.644 47.619 0.50 0.00 0.00 4.08
2274 2715 1.739035 CGAACTATCTTTCGGGCTGCA 60.739 52.381 0.50 0.00 43.79 4.41
2275 2716 0.931005 CGAACTATCTTTCGGGCTGC 59.069 55.000 0.00 0.00 43.79 5.25
2281 2722 1.571919 CTGGCCCGAACTATCTTTCG 58.428 55.000 0.00 0.00 46.46 3.46
2282 2723 1.954927 CCTGGCCCGAACTATCTTTC 58.045 55.000 0.00 0.00 0.00 2.62
2283 2724 0.107165 GCCTGGCCCGAACTATCTTT 60.107 55.000 7.66 0.00 0.00 2.52
2284 2725 0.983378 AGCCTGGCCCGAACTATCTT 60.983 55.000 16.57 0.00 0.00 2.40
2285 2726 1.383248 AGCCTGGCCCGAACTATCT 60.383 57.895 16.57 0.00 0.00 1.98
2286 2727 1.069935 GAGCCTGGCCCGAACTATC 59.930 63.158 16.57 0.00 0.00 2.08
2287 2728 2.797278 CGAGCCTGGCCCGAACTAT 61.797 63.158 18.40 0.00 0.00 2.12
2288 2729 3.458163 CGAGCCTGGCCCGAACTA 61.458 66.667 18.40 0.00 0.00 2.24
2297 2738 1.405463 GAAAATAAAGCCCGAGCCTGG 59.595 52.381 0.00 0.00 41.25 4.45
2298 2739 1.405463 GGAAAATAAAGCCCGAGCCTG 59.595 52.381 0.00 0.00 41.25 4.85
2299 2740 1.005450 TGGAAAATAAAGCCCGAGCCT 59.995 47.619 0.00 0.00 41.25 4.58
2300 2741 1.405463 CTGGAAAATAAAGCCCGAGCC 59.595 52.381 0.00 0.00 41.25 4.70
2301 2742 1.202302 GCTGGAAAATAAAGCCCGAGC 60.202 52.381 0.00 0.00 40.32 5.03
2302 2743 2.851805 GCTGGAAAATAAAGCCCGAG 57.148 50.000 0.00 0.00 0.00 4.63
2307 2748 3.192633 TCTTTCGGGCTGGAAAATAAAGC 59.807 43.478 0.00 0.00 35.64 3.51
2308 2749 5.582689 ATCTTTCGGGCTGGAAAATAAAG 57.417 39.130 0.00 0.00 35.64 1.85
2309 2750 6.184789 ACTATCTTTCGGGCTGGAAAATAAA 58.815 36.000 0.00 0.00 35.64 1.40
2310 2751 5.751586 ACTATCTTTCGGGCTGGAAAATAA 58.248 37.500 0.00 0.00 35.64 1.40
2311 2752 5.367945 ACTATCTTTCGGGCTGGAAAATA 57.632 39.130 0.00 0.00 35.64 1.40
2312 2753 4.236527 ACTATCTTTCGGGCTGGAAAAT 57.763 40.909 0.00 0.00 35.64 1.82
2313 2754 3.713826 ACTATCTTTCGGGCTGGAAAA 57.286 42.857 0.00 0.00 35.64 2.29
2314 2755 3.606687 GAACTATCTTTCGGGCTGGAAA 58.393 45.455 0.00 0.00 34.87 3.13
2315 2756 2.418197 CGAACTATCTTTCGGGCTGGAA 60.418 50.000 0.00 0.00 43.79 3.53
2316 2757 1.136305 CGAACTATCTTTCGGGCTGGA 59.864 52.381 0.00 0.00 43.79 3.86
2317 2758 1.571919 CGAACTATCTTTCGGGCTGG 58.428 55.000 0.00 0.00 43.79 4.85
2323 2764 0.179119 ACGGCCCGAACTATCTTTCG 60.179 55.000 11.71 0.00 46.46 3.46
2324 2765 1.287425 CACGGCCCGAACTATCTTTC 58.713 55.000 11.71 0.00 0.00 2.62
2325 2766 0.743345 GCACGGCCCGAACTATCTTT 60.743 55.000 11.71 0.00 0.00 2.52
2326 2767 1.153429 GCACGGCCCGAACTATCTT 60.153 57.895 11.71 0.00 0.00 2.40
2327 2768 2.017559 GAGCACGGCCCGAACTATCT 62.018 60.000 11.71 0.00 0.00 1.98
2328 2769 1.591863 GAGCACGGCCCGAACTATC 60.592 63.158 11.71 0.00 0.00 2.08
2329 2770 2.058595 AGAGCACGGCCCGAACTAT 61.059 57.895 11.71 0.00 0.00 2.12
2330 2771 2.678934 AGAGCACGGCCCGAACTA 60.679 61.111 11.71 0.00 0.00 2.24
2331 2772 4.379243 CAGAGCACGGCCCGAACT 62.379 66.667 11.71 6.20 0.00 3.01
2339 2780 2.029838 AAATAGAAGCCAGAGCACGG 57.970 50.000 0.00 0.00 43.56 4.94
2340 2781 3.686726 AGAAAAATAGAAGCCAGAGCACG 59.313 43.478 0.00 0.00 43.56 5.34
2341 2782 4.697352 TCAGAAAAATAGAAGCCAGAGCAC 59.303 41.667 0.00 0.00 43.56 4.40
2342 2783 4.910195 TCAGAAAAATAGAAGCCAGAGCA 58.090 39.130 0.00 0.00 43.56 4.26
2343 2784 6.448207 AATCAGAAAAATAGAAGCCAGAGC 57.552 37.500 0.00 0.00 40.32 4.09
2344 2785 7.695618 CGAAAATCAGAAAAATAGAAGCCAGAG 59.304 37.037 0.00 0.00 0.00 3.35
2345 2786 7.362056 CCGAAAATCAGAAAAATAGAAGCCAGA 60.362 37.037 0.00 0.00 0.00 3.86
2346 2787 6.749118 CCGAAAATCAGAAAAATAGAAGCCAG 59.251 38.462 0.00 0.00 0.00 4.85
2347 2788 6.350110 CCCGAAAATCAGAAAAATAGAAGCCA 60.350 38.462 0.00 0.00 0.00 4.75
2348 2789 6.036470 CCCGAAAATCAGAAAAATAGAAGCC 58.964 40.000 0.00 0.00 0.00 4.35
2349 2790 5.516696 GCCCGAAAATCAGAAAAATAGAAGC 59.483 40.000 0.00 0.00 0.00 3.86
2350 2791 6.036470 GGCCCGAAAATCAGAAAAATAGAAG 58.964 40.000 0.00 0.00 0.00 2.85
2351 2792 5.392595 CGGCCCGAAAATCAGAAAAATAGAA 60.393 40.000 0.00 0.00 0.00 2.10
2352 2793 4.095782 CGGCCCGAAAATCAGAAAAATAGA 59.904 41.667 0.00 0.00 0.00 1.98
2353 2794 4.351192 CGGCCCGAAAATCAGAAAAATAG 58.649 43.478 0.00 0.00 0.00 1.73
2354 2795 3.129638 CCGGCCCGAAAATCAGAAAAATA 59.870 43.478 3.71 0.00 0.00 1.40
2355 2796 2.094234 CCGGCCCGAAAATCAGAAAAAT 60.094 45.455 3.71 0.00 0.00 1.82
2356 2797 1.271102 CCGGCCCGAAAATCAGAAAAA 59.729 47.619 3.71 0.00 0.00 1.94
2357 2798 0.885196 CCGGCCCGAAAATCAGAAAA 59.115 50.000 3.71 0.00 0.00 2.29
2358 2799 0.963355 CCCGGCCCGAAAATCAGAAA 60.963 55.000 3.71 0.00 0.00 2.52
2359 2800 1.377987 CCCGGCCCGAAAATCAGAA 60.378 57.895 3.71 0.00 0.00 3.02
2360 2801 2.270850 CCCGGCCCGAAAATCAGA 59.729 61.111 3.71 0.00 0.00 3.27
2361 2802 3.518068 GCCCGGCCCGAAAATCAG 61.518 66.667 3.71 0.00 0.00 2.90
2362 2803 3.577334 AAGCCCGGCCCGAAAATCA 62.577 57.895 3.71 0.00 0.00 2.57
2363 2804 2.279502 GAAAGCCCGGCCCGAAAATC 62.280 60.000 3.71 0.00 0.00 2.17
2364 2805 2.283604 AAAGCCCGGCCCGAAAAT 60.284 55.556 3.71 0.00 0.00 1.82
2365 2806 2.986979 GAAAGCCCGGCCCGAAAA 60.987 61.111 3.71 0.00 0.00 2.29
2376 2817 4.717313 ACCCGAAGCCCGAAAGCC 62.717 66.667 0.00 0.00 41.76 4.35
2377 2818 3.125573 GACCCGAAGCCCGAAAGC 61.126 66.667 0.00 0.00 41.76 3.51
2378 2819 1.741770 CTGACCCGAAGCCCGAAAG 60.742 63.158 0.00 0.00 41.76 2.62
2379 2820 2.345991 CTGACCCGAAGCCCGAAA 59.654 61.111 0.00 0.00 41.76 3.46
2380 2821 3.702048 CCTGACCCGAAGCCCGAA 61.702 66.667 0.00 0.00 41.76 4.30
2383 2824 2.666098 TAAGCCTGACCCGAAGCCC 61.666 63.158 0.00 0.00 0.00 5.19
2384 2825 1.449778 GTAAGCCTGACCCGAAGCC 60.450 63.158 0.00 0.00 0.00 4.35
2385 2826 1.019805 GTGTAAGCCTGACCCGAAGC 61.020 60.000 0.00 0.00 0.00 3.86
2386 2827 0.736325 CGTGTAAGCCTGACCCGAAG 60.736 60.000 0.00 0.00 0.00 3.79
2387 2828 1.290955 CGTGTAAGCCTGACCCGAA 59.709 57.895 0.00 0.00 0.00 4.30
2388 2829 1.904865 ACGTGTAAGCCTGACCCGA 60.905 57.895 0.00 0.00 0.00 5.14
2389 2830 1.736645 CACGTGTAAGCCTGACCCG 60.737 63.158 7.58 0.00 0.00 5.28
2390 2831 2.033194 GCACGTGTAAGCCTGACCC 61.033 63.158 18.38 0.00 0.00 4.46
2391 2832 2.380410 CGCACGTGTAAGCCTGACC 61.380 63.158 18.38 0.00 0.00 4.02
2392 2833 3.011760 GCGCACGTGTAAGCCTGAC 62.012 63.158 18.38 0.00 0.00 3.51
2393 2834 2.736995 GCGCACGTGTAAGCCTGA 60.737 61.111 18.38 0.00 0.00 3.86
2394 2835 4.134187 CGCGCACGTGTAAGCCTG 62.134 66.667 18.38 5.52 33.53 4.85
2417 2858 0.032815 CCGGGCCGAATGTTGTTTTT 59.967 50.000 30.79 0.00 0.00 1.94
2418 2859 1.663173 CCGGGCCGAATGTTGTTTT 59.337 52.632 30.79 0.00 0.00 2.43
2419 2860 2.272447 CCCGGGCCGAATGTTGTTT 61.272 57.895 30.79 0.00 0.00 2.83
2420 2861 2.675075 CCCGGGCCGAATGTTGTT 60.675 61.111 30.79 0.00 0.00 2.83
2423 2864 3.955543 AATGCCCGGGCCGAATGTT 62.956 57.895 41.75 22.50 41.09 2.71
2424 2865 4.440829 AATGCCCGGGCCGAATGT 62.441 61.111 41.75 17.82 41.09 2.71
2425 2866 3.595758 GAATGCCCGGGCCGAATG 61.596 66.667 41.75 16.55 41.09 2.67
2438 2879 3.518068 GAAAGCCCGGCCCGAATG 61.518 66.667 3.71 0.00 0.00 2.67
2451 2892 2.359975 AAGCCCGAAGCCCGAAAG 60.360 61.111 0.00 0.00 45.47 2.62
2452 2893 2.478335 ATCAAGCCCGAAGCCCGAAA 62.478 55.000 0.00 0.00 45.47 3.46
2453 2894 2.478335 AATCAAGCCCGAAGCCCGAA 62.478 55.000 0.00 0.00 45.47 4.30
2454 2895 2.478335 AAATCAAGCCCGAAGCCCGA 62.478 55.000 0.00 0.00 45.47 5.14
2455 2896 1.993369 GAAATCAAGCCCGAAGCCCG 61.993 60.000 0.00 0.00 45.47 6.13
2456 2897 0.965363 TGAAATCAAGCCCGAAGCCC 60.965 55.000 0.00 0.00 45.47 5.19
2457 2898 0.453390 CTGAAATCAAGCCCGAAGCC 59.547 55.000 0.00 0.00 45.47 4.35
2458 2899 0.453390 CCTGAAATCAAGCCCGAAGC 59.547 55.000 0.00 0.00 44.25 3.86
2459 2900 0.453390 GCCTGAAATCAAGCCCGAAG 59.547 55.000 0.00 0.00 0.00 3.79
2460 2901 0.965363 GGCCTGAAATCAAGCCCGAA 60.965 55.000 11.27 0.00 45.44 4.30
2461 2902 1.378514 GGCCTGAAATCAAGCCCGA 60.379 57.895 11.27 0.00 45.44 5.14
2462 2903 3.200522 GGCCTGAAATCAAGCCCG 58.799 61.111 11.27 0.00 45.44 6.13
2465 2906 3.068729 GCCCGGCCTGAAATCAAGC 62.069 63.158 0.00 0.00 32.73 4.01
2466 2907 1.379044 AGCCCGGCCTGAAATCAAG 60.379 57.895 5.55 0.00 0.00 3.02
2467 2908 1.378514 GAGCCCGGCCTGAAATCAA 60.379 57.895 5.55 0.00 0.00 2.57
2468 2909 2.272146 GAGCCCGGCCTGAAATCA 59.728 61.111 5.55 0.00 0.00 2.57
2469 2910 2.897350 CGAGCCCGGCCTGAAATC 60.897 66.667 5.55 0.00 0.00 2.17
2479 2920 0.882927 TGTTTTGAAGTCCGAGCCCG 60.883 55.000 0.00 0.00 0.00 6.13
2480 2921 0.875059 CTGTTTTGAAGTCCGAGCCC 59.125 55.000 0.00 0.00 0.00 5.19
2481 2922 0.875059 CCTGTTTTGAAGTCCGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
2482 2923 0.875059 CCCTGTTTTGAAGTCCGAGC 59.125 55.000 0.00 0.00 0.00 5.03
2483 2924 2.224305 ACTCCCTGTTTTGAAGTCCGAG 60.224 50.000 0.00 0.00 0.00 4.63
2484 2925 1.766496 ACTCCCTGTTTTGAAGTCCGA 59.234 47.619 0.00 0.00 0.00 4.55
2485 2926 2.256117 ACTCCCTGTTTTGAAGTCCG 57.744 50.000 0.00 0.00 0.00 4.79
2486 2927 5.106673 CGAAATACTCCCTGTTTTGAAGTCC 60.107 44.000 0.00 0.00 0.00 3.85
2487 2928 5.106673 CCGAAATACTCCCTGTTTTGAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
2488 2929 4.760204 CCGAAATACTCCCTGTTTTGAAGT 59.240 41.667 0.00 0.00 0.00 3.01
2489 2930 4.156008 CCCGAAATACTCCCTGTTTTGAAG 59.844 45.833 0.00 0.00 0.00 3.02
2490 2931 4.076394 CCCGAAATACTCCCTGTTTTGAA 58.924 43.478 0.00 0.00 0.00 2.69
2491 2932 3.681593 CCCGAAATACTCCCTGTTTTGA 58.318 45.455 0.00 0.00 0.00 2.69
2492 2933 2.163613 GCCCGAAATACTCCCTGTTTTG 59.836 50.000 0.00 0.00 0.00 2.44
2493 2934 2.041216 AGCCCGAAATACTCCCTGTTTT 59.959 45.455 0.00 0.00 0.00 2.43
2494 2935 1.633945 AGCCCGAAATACTCCCTGTTT 59.366 47.619 0.00 0.00 0.00 2.83
2495 2936 1.286248 AGCCCGAAATACTCCCTGTT 58.714 50.000 0.00 0.00 0.00 3.16
2496 2937 1.286248 AAGCCCGAAATACTCCCTGT 58.714 50.000 0.00 0.00 0.00 4.00
2497 2938 2.420058 AAAGCCCGAAATACTCCCTG 57.580 50.000 0.00 0.00 0.00 4.45
2498 2939 2.438392 CCTAAAGCCCGAAATACTCCCT 59.562 50.000 0.00 0.00 0.00 4.20
2499 2940 2.847441 CCTAAAGCCCGAAATACTCCC 58.153 52.381 0.00 0.00 0.00 4.30
2500 2941 2.219458 GCCTAAAGCCCGAAATACTCC 58.781 52.381 0.00 0.00 34.35 3.85
2512 2953 2.514824 CTGAGCCCGGCCTAAAGC 60.515 66.667 5.55 0.00 42.60 3.51
2513 2954 2.190578 CCTGAGCCCGGCCTAAAG 59.809 66.667 5.55 0.00 0.00 1.85
2514 2955 4.109675 GCCTGAGCCCGGCCTAAA 62.110 66.667 5.55 0.00 41.73 1.85
2526 2967 3.679389 GACCTTCATTTCTCAAGCCTGA 58.321 45.455 0.00 0.00 0.00 3.86
2527 2968 2.417933 CGACCTTCATTTCTCAAGCCTG 59.582 50.000 0.00 0.00 0.00 4.85
2528 2969 2.616510 CCGACCTTCATTTCTCAAGCCT 60.617 50.000 0.00 0.00 0.00 4.58
2529 2970 1.740025 CCGACCTTCATTTCTCAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
2530 2971 1.740025 CCCGACCTTCATTTCTCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
2531 2972 1.740025 GCCCGACCTTCATTTCTCAAG 59.260 52.381 0.00 0.00 0.00 3.02
2532 2973 1.351017 AGCCCGACCTTCATTTCTCAA 59.649 47.619 0.00 0.00 0.00 3.02
2533 2974 0.984230 AGCCCGACCTTCATTTCTCA 59.016 50.000 0.00 0.00 0.00 3.27
2534 2975 2.115343 AAGCCCGACCTTCATTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
2535 2976 2.586648 AAAGCCCGACCTTCATTTCT 57.413 45.000 0.00 0.00 0.00 2.52
2536 2977 3.504520 TGTAAAAGCCCGACCTTCATTTC 59.495 43.478 0.00 0.00 0.00 2.17
2537 2978 3.492337 TGTAAAAGCCCGACCTTCATTT 58.508 40.909 0.00 0.00 0.00 2.32
2538 2979 3.149005 TGTAAAAGCCCGACCTTCATT 57.851 42.857 0.00 0.00 0.00 2.57
2539 2980 2.871096 TGTAAAAGCCCGACCTTCAT 57.129 45.000 0.00 0.00 0.00 2.57
2540 2981 2.500229 CTTGTAAAAGCCCGACCTTCA 58.500 47.619 0.00 0.00 0.00 3.02
2541 2982 1.199327 GCTTGTAAAAGCCCGACCTTC 59.801 52.381 6.34 0.00 39.81 3.46
2542 2983 1.244816 GCTTGTAAAAGCCCGACCTT 58.755 50.000 6.34 0.00 39.81 3.50
2543 2984 2.942641 GCTTGTAAAAGCCCGACCT 58.057 52.632 6.34 0.00 39.81 3.85
2550 2991 0.244721 CAGGCTGGGCTTGTAAAAGC 59.755 55.000 9.32 9.32 44.76 3.51
2551 2992 1.909700 TCAGGCTGGGCTTGTAAAAG 58.090 50.000 15.73 0.00 36.96 2.27
2552 2993 2.373335 TTCAGGCTGGGCTTGTAAAA 57.627 45.000 15.73 0.00 36.96 1.52
2553 2994 2.373335 TTTCAGGCTGGGCTTGTAAA 57.627 45.000 15.73 2.84 36.96 2.01
2554 2995 2.446435 GATTTCAGGCTGGGCTTGTAA 58.554 47.619 15.73 0.00 36.96 2.41
2555 2996 1.340991 GGATTTCAGGCTGGGCTTGTA 60.341 52.381 15.73 0.00 36.96 2.41
2556 2997 0.613012 GGATTTCAGGCTGGGCTTGT 60.613 55.000 15.73 0.00 36.96 3.16
2557 2998 1.660560 CGGATTTCAGGCTGGGCTTG 61.661 60.000 15.73 0.00 36.97 4.01
2558 2999 1.379044 CGGATTTCAGGCTGGGCTT 60.379 57.895 15.73 0.00 0.00 4.35
2559 3000 2.273449 CGGATTTCAGGCTGGGCT 59.727 61.111 15.73 0.00 0.00 5.19
2560 3001 2.830370 CCGGATTTCAGGCTGGGC 60.830 66.667 15.73 1.57 0.00 5.36
2585 3026 1.903783 CTAAACCCGGGCAAACGTCG 61.904 60.000 24.08 0.00 0.00 5.12
2586 3027 1.579964 CCTAAACCCGGGCAAACGTC 61.580 60.000 24.08 0.00 0.00 4.34
2587 3028 1.601477 CCTAAACCCGGGCAAACGT 60.601 57.895 24.08 0.00 0.00 3.99
2588 3029 1.302671 TCCTAAACCCGGGCAAACG 60.303 57.895 24.08 5.66 0.00 3.60
2589 3030 1.579964 CGTCCTAAACCCGGGCAAAC 61.580 60.000 24.08 9.66 0.00 2.93
2590 3031 1.302671 CGTCCTAAACCCGGGCAAA 60.303 57.895 24.08 4.44 0.00 3.68
2591 3032 1.766625 TTCGTCCTAAACCCGGGCAA 61.767 55.000 24.08 4.88 0.00 4.52
2592 3033 1.766625 TTTCGTCCTAAACCCGGGCA 61.767 55.000 24.08 4.89 0.00 5.36
2593 3034 1.003476 TTTCGTCCTAAACCCGGGC 60.003 57.895 24.08 0.00 0.00 6.13
2594 3035 1.022982 GCTTTCGTCCTAAACCCGGG 61.023 60.000 22.25 22.25 0.00 5.73
2595 3036 0.036671 AGCTTTCGTCCTAAACCCGG 60.037 55.000 0.00 0.00 0.00 5.73
2596 3037 1.076332 CAGCTTTCGTCCTAAACCCG 58.924 55.000 0.00 0.00 0.00 5.28
2597 3038 1.450025 CCAGCTTTCGTCCTAAACCC 58.550 55.000 0.00 0.00 0.00 4.11
2598 3039 1.450025 CCCAGCTTTCGTCCTAAACC 58.550 55.000 0.00 0.00 0.00 3.27
2599 3040 1.450025 CCCCAGCTTTCGTCCTAAAC 58.550 55.000 0.00 0.00 0.00 2.01
2600 3041 0.322187 GCCCCAGCTTTCGTCCTAAA 60.322 55.000 0.00 0.00 35.50 1.85
2601 3042 1.298667 GCCCCAGCTTTCGTCCTAA 59.701 57.895 0.00 0.00 35.50 2.69
2602 3043 2.987125 GCCCCAGCTTTCGTCCTA 59.013 61.111 0.00 0.00 35.50 2.94
2603 3044 4.394712 CGCCCCAGCTTTCGTCCT 62.395 66.667 0.00 0.00 36.60 3.85
2604 3045 4.699522 ACGCCCCAGCTTTCGTCC 62.700 66.667 0.00 0.00 36.60 4.79
2605 3046 2.775032 TACACGCCCCAGCTTTCGTC 62.775 60.000 0.00 0.00 36.60 4.20
2606 3047 2.781595 CTACACGCCCCAGCTTTCGT 62.782 60.000 0.00 0.00 36.60 3.85
2607 3048 2.047655 TACACGCCCCAGCTTTCG 60.048 61.111 0.00 0.00 36.60 3.46
2608 3049 1.003718 ACTACACGCCCCAGCTTTC 60.004 57.895 0.00 0.00 36.60 2.62
2609 3050 1.003718 GACTACACGCCCCAGCTTT 60.004 57.895 0.00 0.00 36.60 3.51
2610 3051 1.913762 AGACTACACGCCCCAGCTT 60.914 57.895 0.00 0.00 36.60 3.74
2611 3052 2.283966 AGACTACACGCCCCAGCT 60.284 61.111 0.00 0.00 36.60 4.24
2612 3053 2.125512 CAGACTACACGCCCCAGC 60.126 66.667 0.00 0.00 0.00 4.85
2613 3054 1.079819 CACAGACTACACGCCCCAG 60.080 63.158 0.00 0.00 0.00 4.45
2614 3055 2.579657 CCACAGACTACACGCCCCA 61.580 63.158 0.00 0.00 0.00 4.96
2615 3056 2.264794 CCACAGACTACACGCCCC 59.735 66.667 0.00 0.00 0.00 5.80
2616 3057 1.374252 CACCACAGACTACACGCCC 60.374 63.158 0.00 0.00 0.00 6.13
2617 3058 0.944311 CACACCACAGACTACACGCC 60.944 60.000 0.00 0.00 0.00 5.68
2624 3065 2.510906 GCCCACACACCACAGACT 59.489 61.111 0.00 0.00 0.00 3.24
2644 3085 3.307906 TACGTGCTTGCCCTCGGT 61.308 61.111 0.00 0.00 0.00 4.69
2646 3087 2.813908 GGTACGTGCTTGCCCTCG 60.814 66.667 3.01 0.00 0.00 4.63
2683 3124 1.376037 GTGCCAGAAAGAGGGACGG 60.376 63.158 0.00 0.00 37.74 4.79
2733 3174 2.685897 CCGAAAGACAAGACCAAAACCA 59.314 45.455 0.00 0.00 0.00 3.67
2738 3179 2.341846 AAGCCGAAAGACAAGACCAA 57.658 45.000 0.00 0.00 0.00 3.67
2741 3182 2.971430 GGAAAGCCGAAAGACAAGAC 57.029 50.000 0.00 0.00 0.00 3.01
2760 3201 2.579787 CCGTCGGTCAAGCTAGCG 60.580 66.667 9.55 1.67 41.54 4.26
2772 3213 2.452813 CGAATCTTGTGCCCCGTCG 61.453 63.158 0.00 0.00 0.00 5.12
2774 3215 2.746277 GCGAATCTTGTGCCCCGT 60.746 61.111 0.00 0.00 0.00 5.28
2782 3223 4.549458 ACACCAAAAATCAGCGAATCTTG 58.451 39.130 0.00 0.00 0.00 3.02
2789 3230 1.139163 GGCAACACCAAAAATCAGCG 58.861 50.000 0.00 0.00 38.86 5.18
2800 3241 0.318614 CAATTCACCACGGCAACACC 60.319 55.000 0.00 0.00 0.00 4.16
2801 3242 0.665835 TCAATTCACCACGGCAACAC 59.334 50.000 0.00 0.00 0.00 3.32
2802 3243 1.393603 TTCAATTCACCACGGCAACA 58.606 45.000 0.00 0.00 0.00 3.33
2806 3248 0.527565 AGCATTCAATTCACCACGGC 59.472 50.000 0.00 0.00 0.00 5.68
2808 3250 1.731709 TCGAGCATTCAATTCACCACG 59.268 47.619 0.00 0.00 0.00 4.94
2822 3264 0.033504 GGACAGGTTTCAGTCGAGCA 59.966 55.000 0.00 0.00 35.63 4.26
2824 3266 2.751166 ATGGACAGGTTTCAGTCGAG 57.249 50.000 0.00 0.00 35.63 4.04
2827 3269 2.076863 CCGAATGGACAGGTTTCAGTC 58.923 52.381 0.00 0.00 37.49 3.51
2839 3281 2.486013 CAGCATTCCTGATCCGAATGGA 60.486 50.000 23.66 8.74 44.43 3.41
2860 3302 2.417933 ACTGTGAATTCGCTGCTGAATC 59.582 45.455 21.58 11.67 37.59 2.52
2866 3308 0.166814 GGTCACTGTGAATTCGCTGC 59.833 55.000 21.58 8.93 0.00 5.25
2869 3311 0.438830 GTCGGTCACTGTGAATTCGC 59.561 55.000 12.81 12.17 0.00 4.70
2870 3312 1.721389 CAGTCGGTCACTGTGAATTCG 59.279 52.381 12.81 15.75 46.81 3.34
2884 3326 3.740044 AATTGTACAAATCGCAGTCGG 57.260 42.857 13.23 0.00 36.13 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.