Multiple sequence alignment - TraesCS7A01G533400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G533400 chr7A 100.000 5406 0 0 1 5406 711943085 711948490 0.000000e+00 9984
1 TraesCS7A01G533400 chr7A 82.598 816 97 19 2 775 711927808 711928620 0.000000e+00 678
2 TraesCS7A01G533400 chr7D 91.311 2532 145 30 2096 4604 618222502 618224981 0.000000e+00 3387
3 TraesCS7A01G533400 chr7D 95.064 628 20 5 929 1555 618221181 618221798 0.000000e+00 977
4 TraesCS7A01G533400 chr7D 89.546 727 50 9 2 709 618220115 618220834 0.000000e+00 898
5 TraesCS7A01G533400 chr7D 82.067 658 75 16 180 800 618214050 618214701 6.200000e-144 521
6 TraesCS7A01G533400 chr7D 89.375 320 29 5 5089 5406 618225384 618225700 1.090000e-106 398
7 TraesCS7A01G533400 chr7D 88.732 213 16 3 1799 2008 618222256 618222463 2.500000e-63 254
8 TraesCS7A01G533400 chr7D 89.744 117 6 2 707 823 618220865 618220975 1.570000e-30 145
9 TraesCS7A01G533400 chr7B 91.414 1549 99 18 3105 4641 712617435 712618961 0.000000e+00 2093
10 TraesCS7A01G533400 chr7B 90.234 983 68 12 2097 3074 712616473 712617432 0.000000e+00 1258
11 TraesCS7A01G533400 chr7B 93.717 748 30 6 836 1571 712615111 712615853 0.000000e+00 1105
12 TraesCS7A01G533400 chr7B 91.408 710 51 4 1 709 712535635 712536335 0.000000e+00 965
13 TraesCS7A01G533400 chr7B 90.999 711 53 5 1 709 712565229 712565930 0.000000e+00 948
14 TraesCS7A01G533400 chr7B 81.486 848 102 23 7 809 712525817 712526654 0.000000e+00 645
15 TraesCS7A01G533400 chr7B 90.449 356 26 7 2 352 712574381 712574733 3.810000e-126 462
16 TraesCS7A01G533400 chr7B 90.169 356 27 7 2 352 712544185 712544537 1.770000e-124 457
17 TraesCS7A01G533400 chr7B 89.571 326 23 7 707 1025 712536487 712536808 2.340000e-108 403
18 TraesCS7A01G533400 chr7B 89.571 326 23 8 707 1025 712566082 712566403 2.340000e-108 403
19 TraesCS7A01G533400 chr7B 90.747 281 18 3 1719 1996 712616148 712616423 8.550000e-98 368
20 TraesCS7A01G533400 chr7B 85.542 332 20 5 430 760 712544589 712544893 6.750000e-84 322
21 TraesCS7A01G533400 chr7B 85.542 332 20 5 430 760 712574785 712575089 6.750000e-84 322
22 TraesCS7A01G533400 chr7B 90.769 195 11 5 5175 5369 712621891 712622078 2.500000e-63 254
23 TraesCS7A01G533400 chr7B 89.189 111 9 2 4948 5057 712619993 712620101 9.440000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G533400 chr7A 711943085 711948490 5405 False 9984.000000 9984 100.000000 1 5406 1 chr7A.!!$F2 5405
1 TraesCS7A01G533400 chr7A 711927808 711928620 812 False 678.000000 678 82.598000 2 775 1 chr7A.!!$F1 773
2 TraesCS7A01G533400 chr7D 618220115 618225700 5585 False 1009.833333 3387 90.628667 2 5406 6 chr7D.!!$F2 5404
3 TraesCS7A01G533400 chr7D 618214050 618214701 651 False 521.000000 521 82.067000 180 800 1 chr7D.!!$F1 620
4 TraesCS7A01G533400 chr7B 712615111 712622078 6967 False 868.833333 2093 91.011667 836 5369 6 chr7B.!!$F6 4533
5 TraesCS7A01G533400 chr7B 712535635 712536808 1173 False 684.000000 965 90.489500 1 1025 2 chr7B.!!$F2 1024
6 TraesCS7A01G533400 chr7B 712565229 712566403 1174 False 675.500000 948 90.285000 1 1025 2 chr7B.!!$F4 1024
7 TraesCS7A01G533400 chr7B 712525817 712526654 837 False 645.000000 645 81.486000 7 809 1 chr7B.!!$F1 802
8 TraesCS7A01G533400 chr7B 712574381 712575089 708 False 392.000000 462 87.995500 2 760 2 chr7B.!!$F5 758
9 TraesCS7A01G533400 chr7B 712544185 712544893 708 False 389.500000 457 87.855500 2 760 2 chr7B.!!$F3 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 542 0.602638 AGTTTCATCCTTGCGCACGA 60.603 50.000 16.43 12.24 0.00 4.35 F
1561 1923 1.228800 AGGTCCGTCCTTTCTCCGT 60.229 57.895 0.00 0.00 45.67 4.69 F
1608 1972 0.110056 GCCGTCAAGTTCTGTGCATG 60.110 55.000 0.00 0.00 0.00 4.06 F
1770 2332 0.181114 TGAGTTTCTGGTGTGCTGCT 59.819 50.000 0.00 0.00 0.00 4.24 F
1771 2333 0.590195 GAGTTTCTGGTGTGCTGCTG 59.410 55.000 0.00 0.00 0.00 4.41 F
2316 2976 0.907486 TCAAGTCAGGATGCTCTGGG 59.093 55.000 0.00 0.00 35.58 4.45 F
2328 2988 0.984995 GCTCTGGGGGTTTGTAGAGT 59.015 55.000 0.00 0.00 39.04 3.24 F
2937 3599 1.234821 TCGCCAGTTGCTTTTAGTGG 58.765 50.000 0.00 0.00 38.81 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1953 0.110056 CATGCACAGAACTTGACGGC 60.110 55.000 0.00 0.00 0.00 5.68 R
3074 3736 0.609957 TGGGCTGTGCAAAGATCTGG 60.610 55.000 8.49 0.00 0.00 3.86 R
3078 3740 3.700538 TCTAATTGGGCTGTGCAAAGAT 58.299 40.909 8.49 0.00 0.00 2.40 R
3089 3751 4.568956 AGCATGTTTTGTTCTAATTGGGC 58.431 39.130 0.00 0.00 0.00 5.36 R
3445 4108 5.200483 TGAGAAAGTTCTGGTGTTTCCATT 58.800 37.500 0.00 0.00 46.12 3.16 R
3810 4474 1.798813 CCACGTAGGTTGACTTTCAGC 59.201 52.381 0.00 0.00 0.00 4.26 R
4227 4903 2.159382 CCAAAGCAATCACGGGTAGTT 58.841 47.619 0.00 0.00 0.00 2.24 R
4682 5365 0.179124 GGATAAAATGGCGCGGCAAA 60.179 50.000 39.24 23.88 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 7.040478 TCACTGTTATGCAAATCTGTAGCTTTT 60.040 33.333 0.00 0.00 0.00 2.27
50 52 8.236586 CACTGTTATGCAAATCTGTAGCTTTTA 58.763 33.333 0.00 0.00 0.00 1.52
68 70 5.106157 GCTTTTAGCACCTTAGCATTGAAGA 60.106 40.000 0.00 0.00 41.89 2.87
287 301 2.289945 CCTGCTAGAACTTGAAGGCTGT 60.290 50.000 0.00 0.00 0.00 4.40
387 441 1.374758 CAGGCAGGAGAACCGTGTC 60.375 63.158 0.00 0.00 41.83 3.67
388 442 1.837051 AGGCAGGAGAACCGTGTCA 60.837 57.895 0.00 0.00 41.83 3.58
419 473 2.390599 CCACAACACGCCTCGATGG 61.391 63.158 0.00 0.00 39.35 3.51
428 482 3.027170 GCCTCGATGGTTGCACGTG 62.027 63.158 12.28 12.28 38.35 4.49
488 542 0.602638 AGTTTCATCCTTGCGCACGA 60.603 50.000 16.43 12.24 0.00 4.35
565 620 5.185828 ACAATAAAAATGTCCTTCTCTGGGC 59.814 40.000 0.00 0.00 0.00 5.36
571 633 1.271543 TGTCCTTCTCTGGGCAACATG 60.272 52.381 0.00 0.00 38.96 3.21
630 693 6.493189 AATTAAATAAAATGTCCCCCGCAT 57.507 33.333 0.00 0.00 0.00 4.73
705 770 5.758296 ACGTACAAGCATAAATCCATACCAG 59.242 40.000 0.00 0.00 0.00 4.00
732 951 3.496331 TGGAAAGAAATGGTGGTCTTCC 58.504 45.455 0.00 0.00 32.90 3.46
892 1242 3.006728 TTACCGGCCCACCTCCAG 61.007 66.667 0.00 0.00 0.00 3.86
915 1266 6.253512 CAGAAAAGAAACGAAAAACCTCCAAG 59.746 38.462 0.00 0.00 0.00 3.61
928 1279 8.533569 AAAAACCTCCAAGAAAGAATTGTCTA 57.466 30.769 0.00 0.00 32.16 2.59
1057 1416 1.525535 GCATTCTCATCTGCCCGCT 60.526 57.895 0.00 0.00 32.15 5.52
1430 1792 2.126031 GACGCCAAGACGGTCCTC 60.126 66.667 4.14 0.00 37.37 3.71
1561 1923 1.228800 AGGTCCGTCCTTTCTCCGT 60.229 57.895 0.00 0.00 45.67 4.69
1567 1929 1.403780 CCGTCCTTTCTCCGTACCTTG 60.404 57.143 0.00 0.00 0.00 3.61
1571 1933 4.132336 GTCCTTTCTCCGTACCTTGTTTT 58.868 43.478 0.00 0.00 0.00 2.43
1573 1935 4.577283 TCCTTTCTCCGTACCTTGTTTTTG 59.423 41.667 0.00 0.00 0.00 2.44
1574 1936 4.261447 CCTTTCTCCGTACCTTGTTTTTGG 60.261 45.833 0.00 0.00 0.00 3.28
1578 1942 4.336153 TCTCCGTACCTTGTTTTTGGTTTC 59.664 41.667 0.00 0.00 37.74 2.78
1579 1943 4.015084 TCCGTACCTTGTTTTTGGTTTCA 58.985 39.130 0.00 0.00 37.74 2.69
1581 1945 4.563580 CCGTACCTTGTTTTTGGTTTCAAC 59.436 41.667 0.00 0.00 37.74 3.18
1583 1947 5.061187 CGTACCTTGTTTTTGGTTTCAACAC 59.939 40.000 0.00 0.00 37.74 3.32
1585 1949 3.181525 CCTTGTTTTTGGTTTCAACACGC 60.182 43.478 0.00 0.00 30.12 5.34
1586 1950 1.986378 TGTTTTTGGTTTCAACACGCG 59.014 42.857 3.53 3.53 31.78 6.01
1587 1951 1.322040 GTTTTTGGTTTCAACACGCGG 59.678 47.619 12.47 1.27 31.78 6.46
1588 1952 0.526662 TTTTGGTTTCAACACGCGGT 59.473 45.000 12.47 2.05 31.78 5.68
1589 1953 0.179161 TTTGGTTTCAACACGCGGTG 60.179 50.000 12.47 9.20 39.75 4.94
1590 1954 2.353030 GGTTTCAACACGCGGTGC 60.353 61.111 12.47 0.00 36.98 5.01
1592 1956 3.943034 TTTCAACACGCGGTGCCG 61.943 61.111 12.47 6.22 36.98 5.69
1599 1963 4.903010 ACGCGGTGCCGTCAAGTT 62.903 61.111 12.47 0.00 42.09 2.66
1602 1966 2.954753 GCGGTGCCGTCAAGTTCTG 61.955 63.158 12.46 0.00 42.09 3.02
1603 1967 1.594293 CGGTGCCGTCAAGTTCTGT 60.594 57.895 1.93 0.00 34.35 3.41
1604 1968 1.831389 CGGTGCCGTCAAGTTCTGTG 61.831 60.000 1.93 0.00 34.35 3.66
1605 1969 1.279840 GTGCCGTCAAGTTCTGTGC 59.720 57.895 0.00 0.00 0.00 4.57
1607 1971 0.534877 TGCCGTCAAGTTCTGTGCAT 60.535 50.000 0.00 0.00 0.00 3.96
1608 1972 0.110056 GCCGTCAAGTTCTGTGCATG 60.110 55.000 0.00 0.00 0.00 4.06
1609 1973 1.511850 CCGTCAAGTTCTGTGCATGA 58.488 50.000 0.00 0.00 0.00 3.07
1610 1974 1.872952 CCGTCAAGTTCTGTGCATGAA 59.127 47.619 0.00 0.00 0.00 2.57
1612 1976 3.058016 CCGTCAAGTTCTGTGCATGAATT 60.058 43.478 0.00 2.38 0.00 2.17
1613 1977 4.154015 CCGTCAAGTTCTGTGCATGAATTA 59.846 41.667 0.00 0.00 0.00 1.40
1615 1979 5.091431 GTCAAGTTCTGTGCATGAATTAGC 58.909 41.667 0.00 0.00 0.00 3.09
1617 1981 3.960571 AGTTCTGTGCATGAATTAGCCT 58.039 40.909 0.00 0.00 0.00 4.58
1618 1982 3.944015 AGTTCTGTGCATGAATTAGCCTC 59.056 43.478 0.00 0.00 0.00 4.70
1619 1983 3.920231 TCTGTGCATGAATTAGCCTCT 57.080 42.857 0.00 0.00 0.00 3.69
1620 1984 4.226427 TCTGTGCATGAATTAGCCTCTT 57.774 40.909 0.00 0.00 0.00 2.85
1625 2185 4.158394 GTGCATGAATTAGCCTCTTTCCAA 59.842 41.667 0.00 0.00 0.00 3.53
1635 2197 8.738645 ATTAGCCTCTTTCCAACTTATGTTAG 57.261 34.615 0.00 0.00 34.60 2.34
1661 2223 9.301153 GACATCAAAATCGGTGCTTTATATTTT 57.699 29.630 0.00 0.00 31.67 1.82
1662 2224 9.651913 ACATCAAAATCGGTGCTTTATATTTTT 57.348 25.926 0.00 0.00 29.66 1.94
1688 2250 9.883142 TTTTTCCAGAAAAACACACTTGATATT 57.117 25.926 12.99 0.00 43.08 1.28
1689 2251 8.870160 TTTCCAGAAAAACACACTTGATATTG 57.130 30.769 0.00 0.00 0.00 1.90
1690 2252 6.446318 TCCAGAAAAACACACTTGATATTGC 58.554 36.000 0.00 0.00 0.00 3.56
1691 2253 6.265196 TCCAGAAAAACACACTTGATATTGCT 59.735 34.615 0.00 0.00 0.00 3.91
1692 2254 6.583806 CCAGAAAAACACACTTGATATTGCTC 59.416 38.462 0.00 0.00 0.00 4.26
1693 2255 7.365741 CAGAAAAACACACTTGATATTGCTCT 58.634 34.615 0.00 0.00 0.00 4.09
1694 2256 8.506437 CAGAAAAACACACTTGATATTGCTCTA 58.494 33.333 0.00 0.00 0.00 2.43
1695 2257 8.725148 AGAAAAACACACTTGATATTGCTCTAG 58.275 33.333 0.00 0.00 0.00 2.43
1696 2258 7.986085 AAAACACACTTGATATTGCTCTAGT 57.014 32.000 0.00 0.00 32.54 2.57
1697 2259 7.986085 AAACACACTTGATATTGCTCTAGTT 57.014 32.000 0.00 0.00 30.38 2.24
1698 2260 7.602517 AACACACTTGATATTGCTCTAGTTC 57.397 36.000 0.00 0.00 30.38 3.01
1699 2261 6.940739 ACACACTTGATATTGCTCTAGTTCT 58.059 36.000 0.00 0.00 30.38 3.01
1700 2262 7.390027 ACACACTTGATATTGCTCTAGTTCTT 58.610 34.615 0.00 0.00 30.38 2.52
1701 2263 8.531982 ACACACTTGATATTGCTCTAGTTCTTA 58.468 33.333 0.00 0.00 30.38 2.10
1702 2264 9.539825 CACACTTGATATTGCTCTAGTTCTTAT 57.460 33.333 0.00 0.00 30.38 1.73
1770 2332 0.181114 TGAGTTTCTGGTGTGCTGCT 59.819 50.000 0.00 0.00 0.00 4.24
1771 2333 0.590195 GAGTTTCTGGTGTGCTGCTG 59.410 55.000 0.00 0.00 0.00 4.41
1804 2461 9.294030 CTATGCTTGGAATTTCACTTTCATAAC 57.706 33.333 0.00 0.00 0.00 1.89
1852 2510 6.840780 ATAAATGCAATTGGGATACTAGCC 57.159 37.500 7.72 0.00 36.10 3.93
1853 2511 2.656947 TGCAATTGGGATACTAGCCC 57.343 50.000 7.72 1.99 46.22 5.19
1881 2539 3.756434 GCAATGGCTGGTCTTTTGTAGTA 59.244 43.478 0.00 0.00 36.96 1.82
1883 2541 5.588648 GCAATGGCTGGTCTTTTGTAGTATA 59.411 40.000 0.00 0.00 36.96 1.47
1884 2542 6.263168 GCAATGGCTGGTCTTTTGTAGTATAT 59.737 38.462 0.00 0.00 36.96 0.86
1996 2656 6.465439 TCTGTTGTTCTCTGAACTAACAGA 57.535 37.500 28.52 28.52 46.68 3.41
2053 2713 3.357166 ACGAATCATCTCGGAGTTAGC 57.643 47.619 4.69 0.00 43.22 3.09
2054 2714 2.688446 ACGAATCATCTCGGAGTTAGCA 59.312 45.455 4.69 0.00 43.22 3.49
2055 2715 3.130516 ACGAATCATCTCGGAGTTAGCAA 59.869 43.478 4.69 0.00 43.22 3.91
2056 2716 4.112634 CGAATCATCTCGGAGTTAGCAAA 58.887 43.478 4.69 0.00 35.14 3.68
2057 2717 4.747108 CGAATCATCTCGGAGTTAGCAAAT 59.253 41.667 4.69 0.00 35.14 2.32
2058 2718 5.920840 CGAATCATCTCGGAGTTAGCAAATA 59.079 40.000 4.69 0.00 35.14 1.40
2059 2719 6.587990 CGAATCATCTCGGAGTTAGCAAATAT 59.412 38.462 4.69 0.00 35.14 1.28
2060 2720 7.411264 CGAATCATCTCGGAGTTAGCAAATATG 60.411 40.741 4.69 0.00 35.14 1.78
2078 2738 8.201554 CAAATATGCTTCGGTATATGCTATGT 57.798 34.615 0.00 0.00 34.35 2.29
2079 2739 9.313118 CAAATATGCTTCGGTATATGCTATGTA 57.687 33.333 0.00 0.00 34.35 2.29
2084 2744 8.465273 TGCTTCGGTATATGCTATGTATATCT 57.535 34.615 0.00 0.00 0.00 1.98
2085 2745 8.568794 TGCTTCGGTATATGCTATGTATATCTC 58.431 37.037 0.00 0.00 0.00 2.75
2086 2746 8.024285 GCTTCGGTATATGCTATGTATATCTCC 58.976 40.741 0.00 0.00 0.00 3.71
2087 2747 9.290988 CTTCGGTATATGCTATGTATATCTCCT 57.709 37.037 0.00 0.00 0.00 3.69
2088 2748 8.622948 TCGGTATATGCTATGTATATCTCCTG 57.377 38.462 0.00 0.00 0.00 3.86
2089 2749 8.218488 TCGGTATATGCTATGTATATCTCCTGT 58.782 37.037 0.00 0.00 0.00 4.00
2090 2750 8.508062 CGGTATATGCTATGTATATCTCCTGTC 58.492 40.741 0.00 0.00 0.00 3.51
2091 2751 8.508062 GGTATATGCTATGTATATCTCCTGTCG 58.492 40.741 0.00 0.00 0.00 4.35
2092 2752 9.274206 GTATATGCTATGTATATCTCCTGTCGA 57.726 37.037 0.00 0.00 0.00 4.20
2093 2753 8.932434 ATATGCTATGTATATCTCCTGTCGAT 57.068 34.615 0.00 0.00 0.00 3.59
2094 2754 6.442513 TGCTATGTATATCTCCTGTCGATG 57.557 41.667 0.00 0.00 0.00 3.84
2095 2755 5.946377 TGCTATGTATATCTCCTGTCGATGT 59.054 40.000 0.00 0.00 0.00 3.06
2122 2782 9.915629 TTTAGAAGTTCTGAGATGAAACTAGTC 57.084 33.333 15.90 0.00 0.00 2.59
2123 2783 7.775053 AGAAGTTCTGAGATGAAACTAGTCT 57.225 36.000 4.10 0.00 0.00 3.24
2125 2785 6.279513 AGTTCTGAGATGAAACTAGTCTGG 57.720 41.667 0.00 0.00 0.00 3.86
2126 2786 5.186797 AGTTCTGAGATGAAACTAGTCTGGG 59.813 44.000 0.00 0.00 0.00 4.45
2127 2787 4.935578 TCTGAGATGAAACTAGTCTGGGA 58.064 43.478 0.00 0.00 0.00 4.37
2128 2788 5.523588 TCTGAGATGAAACTAGTCTGGGAT 58.476 41.667 0.00 0.00 0.00 3.85
2129 2789 6.673583 TCTGAGATGAAACTAGTCTGGGATA 58.326 40.000 0.00 0.00 0.00 2.59
2130 2790 7.301420 TCTGAGATGAAACTAGTCTGGGATAT 58.699 38.462 0.00 0.00 0.00 1.63
2133 2793 9.029368 TGAGATGAAACTAGTCTGGGATATATG 57.971 37.037 0.00 0.00 0.00 1.78
2147 2807 8.439971 TCTGGGATATATGTAATTCACTTTGCT 58.560 33.333 0.00 0.00 0.00 3.91
2155 2815 6.449635 TGTAATTCACTTTGCTGACTTTGT 57.550 33.333 0.00 0.00 0.00 2.83
2161 2821 5.316167 TCACTTTGCTGACTTTGTCCATAT 58.684 37.500 0.00 0.00 0.00 1.78
2174 2834 6.760770 ACTTTGTCCATATTTGTGTTTGGTTG 59.239 34.615 0.00 0.00 0.00 3.77
2232 2892 8.773033 AATCTCTGCAAAAGGTATGGAAATAT 57.227 30.769 0.00 0.00 0.00 1.28
2234 2894 7.118723 TCTCTGCAAAAGGTATGGAAATATGT 58.881 34.615 0.00 0.00 0.00 2.29
2235 2895 7.615365 TCTCTGCAAAAGGTATGGAAATATGTT 59.385 33.333 0.00 0.00 0.00 2.71
2237 2897 8.592809 TCTGCAAAAGGTATGGAAATATGTTTT 58.407 29.630 0.00 0.00 0.00 2.43
2261 2921 4.669206 TTTTCTTCATTCAAGCCAAGCA 57.331 36.364 0.00 0.00 31.26 3.91
2286 2946 4.559862 ACCTGATCCTTAGTCCAAAGTG 57.440 45.455 0.00 0.00 0.00 3.16
2302 2962 3.281727 AAGTGTGTGTGGTCATCAAGT 57.718 42.857 0.00 0.00 0.00 3.16
2310 2970 2.012673 GTGGTCATCAAGTCAGGATGC 58.987 52.381 0.00 0.00 41.46 3.91
2316 2976 0.907486 TCAAGTCAGGATGCTCTGGG 59.093 55.000 0.00 0.00 35.58 4.45
2328 2988 0.984995 GCTCTGGGGGTTTGTAGAGT 59.015 55.000 0.00 0.00 39.04 3.24
2408 3068 3.181493 GCACCTACAAGCCTTCATTCATG 60.181 47.826 0.00 0.00 0.00 3.07
2409 3069 4.264253 CACCTACAAGCCTTCATTCATGA 58.736 43.478 0.00 0.00 34.44 3.07
2410 3070 4.885907 CACCTACAAGCCTTCATTCATGAT 59.114 41.667 0.00 0.00 36.56 2.45
2411 3071 4.885907 ACCTACAAGCCTTCATTCATGATG 59.114 41.667 0.00 0.00 36.56 3.07
2412 3072 4.885907 CCTACAAGCCTTCATTCATGATGT 59.114 41.667 0.00 0.00 36.56 3.06
2413 3073 5.359009 CCTACAAGCCTTCATTCATGATGTT 59.641 40.000 0.00 0.00 36.56 2.71
2414 3074 5.320549 ACAAGCCTTCATTCATGATGTTC 57.679 39.130 0.00 0.00 36.56 3.18
2415 3075 5.014858 ACAAGCCTTCATTCATGATGTTCT 58.985 37.500 0.00 0.00 36.56 3.01
2416 3076 5.479375 ACAAGCCTTCATTCATGATGTTCTT 59.521 36.000 0.00 0.00 36.56 2.52
2417 3077 6.660521 ACAAGCCTTCATTCATGATGTTCTTA 59.339 34.615 0.00 0.00 36.56 2.10
2418 3078 7.341256 ACAAGCCTTCATTCATGATGTTCTTAT 59.659 33.333 0.00 0.00 36.56 1.73
2419 3079 7.893124 AGCCTTCATTCATGATGTTCTTATT 57.107 32.000 0.00 0.00 36.56 1.40
2420 3080 7.938715 AGCCTTCATTCATGATGTTCTTATTC 58.061 34.615 0.00 0.00 36.56 1.75
2565 3227 2.356382 TGTAATATTCAAAAGCCCGCCG 59.644 45.455 0.00 0.00 0.00 6.46
2588 3250 5.583061 CGGTGCTACAGGTAATTACAAATCA 59.417 40.000 17.16 4.59 0.00 2.57
2613 3275 7.373617 TCCTTATATGCAGTGTTTCCAGATA 57.626 36.000 0.00 0.00 0.00 1.98
2624 3286 7.388776 GCAGTGTTTCCAGATAATATATGCTGA 59.611 37.037 10.47 0.00 0.00 4.26
2631 3293 9.676861 TTCCAGATAATATATGCTGATTCTTGG 57.323 33.333 10.47 0.00 0.00 3.61
2648 3310 2.910688 TGGTTGTGACTCTTCCTGTC 57.089 50.000 0.00 0.00 35.21 3.51
2735 3397 9.220767 GATACTGTTGAGGTTAGTTTCAGAATT 57.779 33.333 0.00 0.00 0.00 2.17
2736 3398 7.264373 ACTGTTGAGGTTAGTTTCAGAATTG 57.736 36.000 0.00 0.00 0.00 2.32
2787 3449 5.700846 TCTCTTGACTGATGTCGTTCTTAC 58.299 41.667 0.00 0.00 45.70 2.34
2812 3474 8.960591 ACTTGTTTCCATACATAAAATCCTCTG 58.039 33.333 0.00 0.00 0.00 3.35
2831 3493 7.194050 TCCTCTGGTTAGTATTTTTCTCCCTA 58.806 38.462 0.00 0.00 0.00 3.53
2843 3505 5.761165 TTTTCTCCCTAAAGTTTGAACGG 57.239 39.130 0.00 0.00 0.00 4.44
2937 3599 1.234821 TCGCCAGTTGCTTTTAGTGG 58.765 50.000 0.00 0.00 38.81 4.00
3056 3718 9.571810 GTGTATATTCATCAAAATGCTGTCAAA 57.428 29.630 0.00 0.00 32.58 2.69
3089 3751 7.558161 TTATTATGTCCAGATCTTTGCACAG 57.442 36.000 0.00 0.00 0.00 3.66
3103 3765 2.591923 TGCACAGCCCAATTAGAACAA 58.408 42.857 0.00 0.00 0.00 2.83
3272 3935 7.695480 TGGTGTGTAACTGCATATTTACAAT 57.305 32.000 14.11 0.00 39.34 2.71
3431 4094 7.517614 TTGCTGTCTGGACATGTTAAATTTA 57.482 32.000 0.00 0.00 41.01 1.40
3681 4344 7.980099 CCTTTTATGTAACGTGTTCTAGGAGAT 59.020 37.037 0.00 0.00 0.00 2.75
3739 4403 5.637810 TGACATGTTAGAAGGAACATTCGAC 59.362 40.000 0.00 0.00 45.65 4.20
3782 4446 7.612633 TGTTGAGGTTCCTAAAGTAAACTTGTT 59.387 33.333 0.00 0.00 36.12 2.83
3796 4460 8.587952 AGTAAACTTGTTGATTTTGTTATGGC 57.412 30.769 0.00 0.00 0.00 4.40
3798 4462 8.987890 GTAAACTTGTTGATTTTGTTATGGCAT 58.012 29.630 4.88 4.88 0.00 4.40
4077 4741 4.637276 TGCCGACTTCACTGATTTCTTTA 58.363 39.130 0.00 0.00 0.00 1.85
4139 4815 5.682862 GCATAACAGTAGCATGTACAATTGC 59.317 40.000 12.58 12.58 39.17 3.56
4227 4903 1.672854 CGCCTGGTCGAATAGGGTCA 61.673 60.000 15.70 0.00 34.58 4.02
4257 4933 0.686789 ATTGCTTTGGCCCTGAAACC 59.313 50.000 0.00 0.00 37.74 3.27
4266 4942 1.408969 GCCCTGAAACCAAACCAGAA 58.591 50.000 0.00 0.00 0.00 3.02
4332 5008 7.636326 AGTTAGTTAATTTGGTGTGAAGTTCG 58.364 34.615 0.00 0.00 0.00 3.95
4339 5015 0.250338 GGTGTGAAGTTCGGGCTTCT 60.250 55.000 16.60 0.00 43.74 2.85
4352 5028 0.893447 GGCTTCTGGCAATTGAGCTT 59.107 50.000 10.34 0.00 44.01 3.74
4366 5042 8.413229 GGCAATTGAGCTTATATTTTGGACTAA 58.587 33.333 10.34 0.00 34.17 2.24
4410 5086 9.803315 TTAATAGAGTAGTACATTTGACAGCAG 57.197 33.333 2.52 0.00 0.00 4.24
4473 5151 4.512944 CCATGGAATTAGGAATGACAGTCG 59.487 45.833 5.56 0.00 0.00 4.18
4479 5157 0.109086 AGGAATGACAGTCGCGAGTG 60.109 55.000 35.87 35.87 37.75 3.51
4597 5277 7.013369 GGTTCTCATTCCTAATTAATGACCCAC 59.987 40.741 0.00 0.00 38.19 4.61
4627 5310 4.339247 AGGCTACAATTGATTTCCGGATTG 59.661 41.667 13.59 8.47 36.00 2.67
4641 5324 2.749076 CCGGATTGTGTGACATCATGTT 59.251 45.455 0.00 0.00 0.00 2.71
4643 5326 3.686241 CGGATTGTGTGACATCATGTTCT 59.314 43.478 0.00 0.00 0.00 3.01
4644 5327 4.869861 CGGATTGTGTGACATCATGTTCTA 59.130 41.667 0.00 0.00 0.00 2.10
4646 5329 5.220739 GGATTGTGTGACATCATGTTCTAGC 60.221 44.000 0.00 0.00 0.00 3.42
4647 5330 4.270245 TGTGTGACATCATGTTCTAGCA 57.730 40.909 0.00 0.00 0.00 3.49
4649 5332 4.692155 TGTGTGACATCATGTTCTAGCAAG 59.308 41.667 0.00 0.00 0.00 4.01
4650 5333 4.931601 GTGTGACATCATGTTCTAGCAAGA 59.068 41.667 0.00 0.00 0.00 3.02
4651 5334 4.931601 TGTGACATCATGTTCTAGCAAGAC 59.068 41.667 0.00 0.00 0.00 3.01
4653 5336 5.063186 GTGACATCATGTTCTAGCAAGACTG 59.937 44.000 0.00 0.00 0.00 3.51
4654 5337 5.047092 TGACATCATGTTCTAGCAAGACTGA 60.047 40.000 0.00 0.00 0.00 3.41
4655 5338 5.798132 ACATCATGTTCTAGCAAGACTGAA 58.202 37.500 0.00 0.00 0.00 3.02
4656 5339 6.233434 ACATCATGTTCTAGCAAGACTGAAA 58.767 36.000 0.00 0.00 0.00 2.69
4657 5340 6.370994 ACATCATGTTCTAGCAAGACTGAAAG 59.629 38.462 0.00 0.00 42.29 2.62
4658 5341 6.101650 TCATGTTCTAGCAAGACTGAAAGA 57.898 37.500 0.00 0.00 37.43 2.52
4659 5342 6.524734 TCATGTTCTAGCAAGACTGAAAGAA 58.475 36.000 0.00 0.00 37.43 2.52
4660 5343 6.648310 TCATGTTCTAGCAAGACTGAAAGAAG 59.352 38.462 0.00 0.00 37.43 2.85
4661 5344 6.161855 TGTTCTAGCAAGACTGAAAGAAGA 57.838 37.500 0.00 0.00 37.43 2.87
4662 5345 6.219473 TGTTCTAGCAAGACTGAAAGAAGAG 58.781 40.000 0.00 0.00 37.43 2.85
4663 5346 4.815269 TCTAGCAAGACTGAAAGAAGAGC 58.185 43.478 0.00 0.00 37.43 4.09
4664 5347 3.767902 AGCAAGACTGAAAGAAGAGCT 57.232 42.857 0.00 0.00 37.43 4.09
4665 5348 4.881019 AGCAAGACTGAAAGAAGAGCTA 57.119 40.909 0.00 0.00 37.43 3.32
4666 5349 4.819769 AGCAAGACTGAAAGAAGAGCTAG 58.180 43.478 0.00 0.00 37.43 3.42
4667 5350 4.526262 AGCAAGACTGAAAGAAGAGCTAGA 59.474 41.667 0.00 0.00 37.43 2.43
4668 5351 5.011533 AGCAAGACTGAAAGAAGAGCTAGAA 59.988 40.000 0.00 0.00 37.43 2.10
4669 5352 5.874261 GCAAGACTGAAAGAAGAGCTAGAAT 59.126 40.000 0.00 0.00 37.43 2.40
4670 5353 7.038659 GCAAGACTGAAAGAAGAGCTAGAATA 58.961 38.462 0.00 0.00 37.43 1.75
4671 5354 7.547370 GCAAGACTGAAAGAAGAGCTAGAATAA 59.453 37.037 0.00 0.00 37.43 1.40
4672 5355 9.429359 CAAGACTGAAAGAAGAGCTAGAATAAA 57.571 33.333 0.00 0.00 37.43 1.40
4719 5402 2.293170 TCCTTGTCGTTGTGCATGAAA 58.707 42.857 0.00 0.00 0.00 2.69
4761 5444 6.641169 TTTGTTAGTAATGTTGTGATGCCA 57.359 33.333 0.00 0.00 0.00 4.92
4762 5445 5.621197 TGTTAGTAATGTTGTGATGCCAC 57.379 39.130 0.00 0.00 43.46 5.01
4805 5488 8.187480 CCAATTACATGAAAATACAATCCACGA 58.813 33.333 0.00 0.00 0.00 4.35
4807 5490 9.734620 AATTACATGAAAATACAATCCACGATG 57.265 29.630 0.00 0.00 0.00 3.84
4858 5541 4.718940 TTGCTCTGTTGTCATAGATCGA 57.281 40.909 0.00 0.00 0.00 3.59
4891 5574 9.653287 TTTATTTCACACTATGTAGAAGAGGTG 57.347 33.333 0.00 0.00 0.00 4.00
4910 5593 7.331791 AGAGGTGACATAATAACTTGGAGAAC 58.668 38.462 0.00 0.00 0.00 3.01
4938 5621 6.260493 AAACAGTTGTTTTGCATGTTGCATAT 59.740 30.769 2.61 0.00 44.88 1.78
4956 6403 6.757237 TGCATATAATTATTTGTGCAAGGGG 58.243 36.000 20.94 0.00 39.36 4.79
4999 6446 4.870363 CATTTGGTTCAAAATGTCCGACT 58.130 39.130 0.00 0.00 40.91 4.18
5017 6464 3.128938 CGACTAGTTTCGGTCTTCCAGAT 59.871 47.826 0.00 0.00 35.26 2.90
5019 6466 4.087182 ACTAGTTTCGGTCTTCCAGATGA 58.913 43.478 0.00 0.00 0.00 2.92
5020 6467 3.601443 AGTTTCGGTCTTCCAGATGAG 57.399 47.619 0.00 0.00 0.00 2.90
5021 6468 3.165875 AGTTTCGGTCTTCCAGATGAGA 58.834 45.455 0.00 0.00 0.00 3.27
5047 6494 2.164624 CCAAAACGAACACCACAAAGGA 59.835 45.455 0.00 0.00 41.22 3.36
5048 6495 3.434637 CAAAACGAACACCACAAAGGAG 58.565 45.455 0.00 0.00 41.22 3.69
5058 6788 1.543429 CCACAAAGGAGGTCTGGACAC 60.543 57.143 3.10 0.00 41.22 3.67
5060 6790 1.417890 ACAAAGGAGGTCTGGACACTG 59.582 52.381 3.10 0.00 0.00 3.66
5072 6802 3.901222 TCTGGACACTGTGATGAAACCTA 59.099 43.478 15.86 0.00 0.00 3.08
5075 6805 3.997021 GGACACTGTGATGAAACCTACAG 59.003 47.826 15.86 0.00 44.52 2.74
5087 6817 3.629142 AACCTACAGTCCAAGGTATGC 57.371 47.619 0.00 0.00 45.51 3.14
5123 6908 6.713450 GGAGGACCAACTGTTTATCAAGTTTA 59.287 38.462 0.00 0.00 35.97 2.01
5127 6912 9.758651 GGACCAACTGTTTATCAAGTTTAATTT 57.241 29.630 0.00 0.00 0.00 1.82
5162 6948 8.682936 AATCCTCAAGGTTATGTGATATCAAC 57.317 34.615 7.07 1.66 36.34 3.18
5169 6955 6.349300 AGGTTATGTGATATCAACTGTGACC 58.651 40.000 7.07 10.75 36.31 4.02
5171 6957 6.349300 GTTATGTGATATCAACTGTGACCCT 58.651 40.000 7.07 0.00 36.31 4.34
5173 6959 4.578871 TGTGATATCAACTGTGACCCTTG 58.421 43.478 7.07 0.00 36.31 3.61
5177 8297 0.550914 TCAACTGTGACCCTTGCCTT 59.449 50.000 0.00 0.00 0.00 4.35
5181 8301 1.145738 ACTGTGACCCTTGCCTTCAAT 59.854 47.619 0.00 0.00 0.00 2.57
5282 8402 4.516365 AGGACAACCGTACTAACAAGAG 57.484 45.455 0.00 0.00 33.07 2.85
5333 8453 5.354234 TGAATTCCAAAACGAGATCCTAAGC 59.646 40.000 2.27 0.00 0.00 3.09
5334 8454 3.261981 TCCAAAACGAGATCCTAAGCC 57.738 47.619 0.00 0.00 0.00 4.35
5341 8461 2.168728 ACGAGATCCTAAGCCAAAGTCC 59.831 50.000 0.00 0.00 0.00 3.85
5369 8489 1.078989 ACCCACCTTAGGCACTCTACT 59.921 52.381 0.00 0.00 41.75 2.57
5379 8499 2.300437 AGGCACTCTACTTGACCACTTC 59.700 50.000 0.00 0.00 0.00 3.01
5382 8502 4.487019 GCACTCTACTTGACCACTTCTAC 58.513 47.826 0.00 0.00 0.00 2.59
5388 8508 7.873505 ACTCTACTTGACCACTTCTACATTTTC 59.126 37.037 0.00 0.00 0.00 2.29
5389 8509 7.159372 TCTACTTGACCACTTCTACATTTTCC 58.841 38.462 0.00 0.00 0.00 3.13
5390 8510 5.941788 ACTTGACCACTTCTACATTTTCCT 58.058 37.500 0.00 0.00 0.00 3.36
5399 8520 7.385205 CCACTTCTACATTTTCCTACATATCCG 59.615 40.741 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 4.877823 CACATCTTCAATGCTAAGGTGCTA 59.122 41.667 0.00 0.00 38.40 3.49
50 52 3.693085 CACATCTTCAATGCTAAGGTGCT 59.307 43.478 0.00 0.00 38.40 4.40
226 237 5.277250 TGATACATGAACTAGTTCCCCTGA 58.723 41.667 28.43 13.13 38.77 3.86
345 367 3.623060 TCCATGCGACTTGATTCTTAAGC 59.377 43.478 0.00 0.00 0.00 3.09
348 370 5.022282 TGATCCATGCGACTTGATTCTTA 57.978 39.130 0.00 0.00 0.00 2.10
354 394 0.462581 GCCTGATCCATGCGACTTGA 60.463 55.000 0.00 0.00 0.00 3.02
387 441 2.880268 TGTTGTGGCTTGAAGATCAGTG 59.120 45.455 0.00 0.00 0.00 3.66
388 442 2.880890 GTGTTGTGGCTTGAAGATCAGT 59.119 45.455 0.00 0.00 0.00 3.41
419 473 0.602638 TCATCTGACCCACGTGCAAC 60.603 55.000 10.91 3.60 0.00 4.17
428 482 6.426646 AGTATTAGACCATTCATCTGACCC 57.573 41.667 0.00 0.00 0.00 4.46
488 542 1.968017 CAGCAACCATGGTGCTCGT 60.968 57.895 28.25 9.21 46.84 4.18
565 620 5.107760 GCATCAGTTTTGCAGTTACATGTTG 60.108 40.000 2.30 0.00 39.90 3.33
705 770 5.480422 AGACCACCATTTCTTTCCAAATACC 59.520 40.000 0.00 0.00 0.00 2.73
732 951 5.230182 TCATACATCGAATTCCATTCTCGG 58.770 41.667 0.00 0.00 37.13 4.63
892 1242 6.327154 TCTTGGAGGTTTTTCGTTTCTTTTC 58.673 36.000 0.00 0.00 0.00 2.29
942 1298 5.034797 CGGCGACTTTTTCTTTCTTTTCTT 58.965 37.500 0.00 0.00 0.00 2.52
1070 1429 0.392193 AAGAAGACATGGCTGCGGAG 60.392 55.000 0.00 0.00 0.00 4.63
1148 1507 1.622752 GAGGAGGGGTTTGGGGGAT 60.623 63.158 0.00 0.00 0.00 3.85
1487 1849 0.326618 GGAACATGGAGAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
1532 1894 3.744719 CGGACCTTCTCGGCGACA 61.745 66.667 4.99 0.00 35.61 4.35
1555 1917 3.564053 ACCAAAAACAAGGTACGGAGA 57.436 42.857 0.00 0.00 36.07 3.71
1557 1919 4.015084 TGAAACCAAAAACAAGGTACGGA 58.985 39.130 0.00 0.00 37.07 4.69
1558 1920 4.373348 TGAAACCAAAAACAAGGTACGG 57.627 40.909 0.00 0.00 37.07 4.02
1561 1923 5.162075 CGTGTTGAAACCAAAAACAAGGTA 58.838 37.500 0.00 0.00 37.07 3.08
1567 1929 1.322040 CCGCGTGTTGAAACCAAAAAC 59.678 47.619 4.92 0.00 0.00 2.43
1571 1933 1.429825 CACCGCGTGTTGAAACCAA 59.570 52.632 4.92 0.00 0.00 3.67
1573 1935 2.353030 GCACCGCGTGTTGAAACC 60.353 61.111 4.92 0.00 35.75 3.27
1574 1936 2.353030 GGCACCGCGTGTTGAAAC 60.353 61.111 4.92 0.00 35.75 2.78
1583 1947 4.072088 GAACTTGACGGCACCGCG 62.072 66.667 9.43 0.00 44.19 6.46
1585 1949 1.594293 ACAGAACTTGACGGCACCG 60.594 57.895 7.71 7.71 46.03 4.94
1586 1950 1.941812 CACAGAACTTGACGGCACC 59.058 57.895 0.00 0.00 0.00 5.01
1587 1951 1.279840 GCACAGAACTTGACGGCAC 59.720 57.895 0.00 0.00 0.00 5.01
1588 1952 0.534877 ATGCACAGAACTTGACGGCA 60.535 50.000 0.00 0.00 36.73 5.69
1589 1953 0.110056 CATGCACAGAACTTGACGGC 60.110 55.000 0.00 0.00 0.00 5.68
1590 1954 1.511850 TCATGCACAGAACTTGACGG 58.488 50.000 0.00 0.00 0.00 4.79
1592 1956 5.091431 GCTAATTCATGCACAGAACTTGAC 58.909 41.667 5.63 0.00 0.00 3.18
1594 1958 4.157289 AGGCTAATTCATGCACAGAACTTG 59.843 41.667 5.63 0.00 0.00 3.16
1596 1960 3.944015 GAGGCTAATTCATGCACAGAACT 59.056 43.478 5.63 0.00 0.00 3.01
1597 1961 3.944015 AGAGGCTAATTCATGCACAGAAC 59.056 43.478 5.63 0.00 0.00 3.01
1599 1963 3.920231 AGAGGCTAATTCATGCACAGA 57.080 42.857 0.00 0.00 0.00 3.41
1602 1966 3.696051 TGGAAAGAGGCTAATTCATGCAC 59.304 43.478 12.24 0.00 0.00 4.57
1603 1967 3.966979 TGGAAAGAGGCTAATTCATGCA 58.033 40.909 12.24 0.00 0.00 3.96
1604 1968 4.400567 AGTTGGAAAGAGGCTAATTCATGC 59.599 41.667 12.24 3.60 0.00 4.06
1605 1969 6.521151 AAGTTGGAAAGAGGCTAATTCATG 57.479 37.500 12.24 0.00 0.00 3.07
1607 1971 7.175104 ACATAAGTTGGAAAGAGGCTAATTCA 58.825 34.615 12.24 0.00 0.00 2.57
1608 1972 7.631717 ACATAAGTTGGAAAGAGGCTAATTC 57.368 36.000 0.00 0.00 0.00 2.17
1609 1973 9.178758 CTAACATAAGTTGGAAAGAGGCTAATT 57.821 33.333 0.00 0.00 38.37 1.40
1610 1974 8.548877 TCTAACATAAGTTGGAAAGAGGCTAAT 58.451 33.333 0.00 0.00 41.50 1.73
1612 1976 7.038587 TGTCTAACATAAGTTGGAAAGAGGCTA 60.039 37.037 0.00 0.00 45.17 3.93
1613 1977 6.174049 GTCTAACATAAGTTGGAAAGAGGCT 58.826 40.000 0.00 0.00 45.17 4.58
1615 1979 7.824289 TGATGTCTAACATAAGTTGGAAAGAGG 59.176 37.037 0.00 0.00 45.17 3.69
1617 1981 9.567776 TTTGATGTCTAACATAAGTTGGAAAGA 57.432 29.630 0.00 0.00 45.17 2.52
1625 2185 7.414098 GCACCGATTTTGATGTCTAACATAAGT 60.414 37.037 0.00 0.00 39.27 2.24
1635 2197 8.856490 AAATATAAAGCACCGATTTTGATGTC 57.144 30.769 0.00 0.00 0.00 3.06
1662 2224 9.883142 AATATCAAGTGTGTTTTTCTGGAAAAA 57.117 25.926 14.72 14.72 44.98 1.94
1664 2226 7.437862 GCAATATCAAGTGTGTTTTTCTGGAAA 59.562 33.333 0.00 0.00 0.00 3.13
1665 2227 6.922957 GCAATATCAAGTGTGTTTTTCTGGAA 59.077 34.615 0.00 0.00 0.00 3.53
1668 2230 7.365741 AGAGCAATATCAAGTGTGTTTTTCTG 58.634 34.615 0.00 0.00 0.00 3.02
1669 2231 7.516198 AGAGCAATATCAAGTGTGTTTTTCT 57.484 32.000 0.00 0.00 0.00 2.52
1670 2232 8.507249 ACTAGAGCAATATCAAGTGTGTTTTTC 58.493 33.333 0.00 0.00 0.00 2.29
1672 2234 7.986085 ACTAGAGCAATATCAAGTGTGTTTT 57.014 32.000 0.00 0.00 0.00 2.43
1673 2235 7.880195 AGAACTAGAGCAATATCAAGTGTGTTT 59.120 33.333 0.00 0.00 0.00 2.83
1674 2236 7.390027 AGAACTAGAGCAATATCAAGTGTGTT 58.610 34.615 0.00 0.00 0.00 3.32
1675 2237 6.940739 AGAACTAGAGCAATATCAAGTGTGT 58.059 36.000 0.00 0.00 0.00 3.72
1676 2238 7.840342 AAGAACTAGAGCAATATCAAGTGTG 57.160 36.000 0.00 0.00 0.00 3.82
1713 2275 7.640597 ACATAGCACATTGACTACTACAGTA 57.359 36.000 0.00 0.00 37.72 2.74
1714 2276 6.531503 ACATAGCACATTGACTACTACAGT 57.468 37.500 0.00 0.00 41.47 3.55
1715 2277 7.545615 TCAAACATAGCACATTGACTACTACAG 59.454 37.037 0.00 0.00 0.00 2.74
1716 2278 7.382898 TCAAACATAGCACATTGACTACTACA 58.617 34.615 0.00 0.00 0.00 2.74
1717 2279 7.827819 TCAAACATAGCACATTGACTACTAC 57.172 36.000 0.00 0.00 0.00 2.73
1734 2296 8.080417 CAGAAACTCATCTGTCATTTCAAACAT 58.920 33.333 0.00 0.00 41.54 2.71
1736 2298 6.860023 CCAGAAACTCATCTGTCATTTCAAAC 59.140 38.462 3.86 0.00 44.32 2.93
1770 2332 5.709631 TGAAATTCCAAGCATAGTAAGTGCA 59.290 36.000 0.69 0.00 44.87 4.57
1771 2333 6.030228 GTGAAATTCCAAGCATAGTAAGTGC 58.970 40.000 0.00 0.00 42.81 4.40
1852 2510 3.458163 CCAGCCATTGCCTGCAGG 61.458 66.667 29.34 29.34 38.69 4.85
1853 2511 2.678934 ACCAGCCATTGCCTGCAG 60.679 61.111 6.78 6.78 38.69 4.41
1881 2539 9.499479 CTTGCACCTGTTAAGATCTTATCATAT 57.501 33.333 21.12 12.58 0.00 1.78
1883 2541 7.341805 ACTTGCACCTGTTAAGATCTTATCAT 58.658 34.615 21.12 9.33 0.00 2.45
1884 2542 6.711277 ACTTGCACCTGTTAAGATCTTATCA 58.289 36.000 20.11 20.11 0.00 2.15
2028 2688 7.082602 GCTAACTCCGAGATGATTCGTTATTA 58.917 38.462 1.33 0.00 38.88 0.98
2029 2689 5.921408 GCTAACTCCGAGATGATTCGTTATT 59.079 40.000 1.33 0.00 38.88 1.40
2030 2690 5.009710 TGCTAACTCCGAGATGATTCGTTAT 59.990 40.000 1.33 0.00 38.88 1.89
2032 2692 3.130516 TGCTAACTCCGAGATGATTCGTT 59.869 43.478 1.33 0.00 38.88 3.85
2034 2694 3.355626 TGCTAACTCCGAGATGATTCG 57.644 47.619 1.33 0.00 40.18 3.34
2035 2695 7.623089 GCATATTTGCTAACTCCGAGATGATTC 60.623 40.741 1.33 0.00 45.77 2.52
2036 2696 6.148480 GCATATTTGCTAACTCCGAGATGATT 59.852 38.462 1.33 0.00 45.77 2.57
2037 2697 5.641209 GCATATTTGCTAACTCCGAGATGAT 59.359 40.000 1.33 0.00 45.77 2.45
2038 2698 4.991056 GCATATTTGCTAACTCCGAGATGA 59.009 41.667 1.33 0.00 45.77 2.92
2039 2699 5.274881 GCATATTTGCTAACTCCGAGATG 57.725 43.478 1.33 0.00 45.77 2.90
2053 2713 8.201554 ACATAGCATATACCGAAGCATATTTG 57.798 34.615 0.00 0.00 0.00 2.32
2058 2718 9.083422 AGATATACATAGCATATACCGAAGCAT 57.917 33.333 0.00 0.00 0.00 3.79
2059 2719 8.465273 AGATATACATAGCATATACCGAAGCA 57.535 34.615 0.00 0.00 0.00 3.91
2060 2720 8.024285 GGAGATATACATAGCATATACCGAAGC 58.976 40.741 0.00 0.00 0.00 3.86
2061 2721 9.290988 AGGAGATATACATAGCATATACCGAAG 57.709 37.037 0.00 0.00 0.00 3.79
2062 2722 9.067986 CAGGAGATATACATAGCATATACCGAA 57.932 37.037 0.00 0.00 0.00 4.30
2063 2723 8.218488 ACAGGAGATATACATAGCATATACCGA 58.782 37.037 0.00 0.00 0.00 4.69
2064 2724 8.397575 ACAGGAGATATACATAGCATATACCG 57.602 38.462 0.00 0.00 0.00 4.02
2065 2725 8.508062 CGACAGGAGATATACATAGCATATACC 58.492 40.741 0.00 0.00 0.00 2.73
2066 2726 9.274206 TCGACAGGAGATATACATAGCATATAC 57.726 37.037 0.00 0.00 0.00 1.47
2068 2728 8.791675 CATCGACAGGAGATATACATAGCATAT 58.208 37.037 0.00 0.00 0.00 1.78
2069 2729 7.775561 ACATCGACAGGAGATATACATAGCATA 59.224 37.037 0.00 0.00 0.00 3.14
2070 2730 6.605194 ACATCGACAGGAGATATACATAGCAT 59.395 38.462 0.00 0.00 0.00 3.79
2071 2731 5.946377 ACATCGACAGGAGATATACATAGCA 59.054 40.000 0.00 0.00 0.00 3.49
2072 2732 6.443934 ACATCGACAGGAGATATACATAGC 57.556 41.667 0.00 0.00 0.00 2.97
2075 2735 9.078990 TCTAAAACATCGACAGGAGATATACAT 57.921 33.333 0.00 0.00 0.00 2.29
2076 2736 8.459911 TCTAAAACATCGACAGGAGATATACA 57.540 34.615 0.00 0.00 0.00 2.29
2077 2737 9.400638 CTTCTAAAACATCGACAGGAGATATAC 57.599 37.037 0.00 0.00 0.00 1.47
2078 2738 9.132923 ACTTCTAAAACATCGACAGGAGATATA 57.867 33.333 0.00 0.00 0.00 0.86
2079 2739 8.012957 ACTTCTAAAACATCGACAGGAGATAT 57.987 34.615 0.00 0.00 0.00 1.63
2080 2740 7.406031 ACTTCTAAAACATCGACAGGAGATA 57.594 36.000 0.00 0.00 0.00 1.98
2081 2741 6.287589 ACTTCTAAAACATCGACAGGAGAT 57.712 37.500 0.00 0.00 0.00 2.75
2082 2742 5.723672 ACTTCTAAAACATCGACAGGAGA 57.276 39.130 0.00 0.00 0.00 3.71
2083 2743 6.090088 CAGAACTTCTAAAACATCGACAGGAG 59.910 42.308 0.00 0.00 0.00 3.69
2084 2744 5.926542 CAGAACTTCTAAAACATCGACAGGA 59.073 40.000 0.00 0.00 0.00 3.86
2085 2745 5.926542 TCAGAACTTCTAAAACATCGACAGG 59.073 40.000 0.00 0.00 0.00 4.00
2086 2746 6.863645 TCTCAGAACTTCTAAAACATCGACAG 59.136 38.462 0.00 0.00 0.00 3.51
2087 2747 6.745116 TCTCAGAACTTCTAAAACATCGACA 58.255 36.000 0.00 0.00 0.00 4.35
2088 2748 7.542477 TCATCTCAGAACTTCTAAAACATCGAC 59.458 37.037 0.00 0.00 0.00 4.20
2089 2749 7.602753 TCATCTCAGAACTTCTAAAACATCGA 58.397 34.615 0.00 0.00 0.00 3.59
2090 2750 7.818493 TCATCTCAGAACTTCTAAAACATCG 57.182 36.000 0.00 0.00 0.00 3.84
2091 2751 9.818796 GTTTCATCTCAGAACTTCTAAAACATC 57.181 33.333 0.00 0.00 0.00 3.06
2092 2752 9.566432 AGTTTCATCTCAGAACTTCTAAAACAT 57.434 29.630 0.00 0.00 0.00 2.71
2093 2753 8.964476 AGTTTCATCTCAGAACTTCTAAAACA 57.036 30.769 0.00 0.00 0.00 2.83
2099 2759 7.309744 CCAGACTAGTTTCATCTCAGAACTTCT 60.310 40.741 0.00 0.00 0.00 2.85
2120 2780 8.507249 GCAAAGTGAATTACATATATCCCAGAC 58.493 37.037 0.00 0.00 0.00 3.51
2122 2782 8.509690 CAGCAAAGTGAATTACATATATCCCAG 58.490 37.037 0.00 0.00 0.00 4.45
2123 2783 8.217111 TCAGCAAAGTGAATTACATATATCCCA 58.783 33.333 0.00 0.00 0.00 4.37
2125 2785 9.277783 AGTCAGCAAAGTGAATTACATATATCC 57.722 33.333 0.00 0.00 0.00 2.59
2129 2789 8.796475 ACAAAGTCAGCAAAGTGAATTACATAT 58.204 29.630 0.00 0.00 33.76 1.78
2130 2790 8.165239 ACAAAGTCAGCAAAGTGAATTACATA 57.835 30.769 0.00 0.00 33.76 2.29
2133 2793 5.915196 GGACAAAGTCAGCAAAGTGAATTAC 59.085 40.000 0.00 0.00 33.76 1.89
2147 2807 6.097554 ACCAAACACAAATATGGACAAAGTCA 59.902 34.615 0.00 0.00 36.75 3.41
2155 2815 8.970859 ATTTTTCAACCAAACACAAATATGGA 57.029 26.923 0.00 0.00 36.75 3.41
2161 2821 8.777865 TGACATATTTTTCAACCAAACACAAA 57.222 26.923 0.00 0.00 0.00 2.83
2206 2866 6.916360 TTTCCATACCTTTTGCAGAGATTT 57.084 33.333 1.09 0.00 0.00 2.17
2241 2901 4.877378 ATGCTTGGCTTGAATGAAGAAA 57.123 36.364 0.00 0.00 32.82 2.52
2244 2904 4.866486 GGTAAATGCTTGGCTTGAATGAAG 59.134 41.667 0.00 0.00 34.41 3.02
2245 2905 4.527816 AGGTAAATGCTTGGCTTGAATGAA 59.472 37.500 0.00 0.00 0.00 2.57
2246 2906 4.082081 CAGGTAAATGCTTGGCTTGAATGA 60.082 41.667 0.00 0.00 0.00 2.57
2247 2907 4.082081 TCAGGTAAATGCTTGGCTTGAATG 60.082 41.667 0.00 0.00 0.00 2.67
2248 2908 4.088634 TCAGGTAAATGCTTGGCTTGAAT 58.911 39.130 0.00 0.00 0.00 2.57
2249 2909 3.495331 TCAGGTAAATGCTTGGCTTGAA 58.505 40.909 0.00 0.00 0.00 2.69
2250 2910 3.153369 TCAGGTAAATGCTTGGCTTGA 57.847 42.857 0.00 0.00 0.00 3.02
2251 2911 3.181483 GGATCAGGTAAATGCTTGGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
2252 2912 3.026694 GGATCAGGTAAATGCTTGGCTT 58.973 45.455 0.00 0.00 0.00 4.35
2253 2913 2.243221 AGGATCAGGTAAATGCTTGGCT 59.757 45.455 0.00 0.00 0.00 4.75
2259 2919 5.036117 TGGACTAAGGATCAGGTAAATGC 57.964 43.478 0.00 0.00 0.00 3.56
2261 2921 7.112779 CACTTTGGACTAAGGATCAGGTAAAT 58.887 38.462 0.00 0.00 0.00 1.40
2286 2946 2.146342 CCTGACTTGATGACCACACAC 58.854 52.381 0.00 0.00 0.00 3.82
2302 2962 0.846427 AAACCCCCAGAGCATCCTGA 60.846 55.000 0.00 0.00 36.29 3.86
2310 2970 2.168728 GCTACTCTACAAACCCCCAGAG 59.831 54.545 0.00 0.00 40.31 3.35
2316 2976 5.064834 GCTTTATGTGCTACTCTACAAACCC 59.935 44.000 0.00 0.00 0.00 4.11
2368 3028 4.589374 AGGTGCCATAGTGGTCTATAGAAC 59.411 45.833 11.09 11.09 40.46 3.01
2565 3227 6.995511 TGATTTGTAATTACCTGTAGCACC 57.004 37.500 13.01 0.00 0.00 5.01
2588 3250 6.252599 TCTGGAAACACTGCATATAAGGAT 57.747 37.500 0.00 0.00 35.60 3.24
2595 3257 9.166173 GCATATATTATCTGGAAACACTGCATA 57.834 33.333 0.00 0.00 35.60 3.14
2613 3275 7.776969 AGTCACAACCAAGAATCAGCATATATT 59.223 33.333 0.00 0.00 0.00 1.28
2624 3286 4.141390 ACAGGAAGAGTCACAACCAAGAAT 60.141 41.667 0.00 0.00 0.00 2.40
2628 3290 2.158813 GGACAGGAAGAGTCACAACCAA 60.159 50.000 0.00 0.00 37.74 3.67
2631 3293 2.760374 CTGGACAGGAAGAGTCACAAC 58.240 52.381 0.00 0.00 37.74 3.32
2648 3310 4.982241 ATCAGTATACCCAACATCCTGG 57.018 45.455 0.00 0.00 36.10 4.45
2761 3423 6.707440 AGAACGACATCAGTCAAGAGATAT 57.293 37.500 0.00 0.00 45.23 1.63
2770 3432 6.346678 GGAAACAAGTAAGAACGACATCAGTC 60.347 42.308 0.00 0.00 41.46 3.51
2808 3470 9.384764 CTTTAGGGAGAAAAATACTAACCAGAG 57.615 37.037 0.00 0.00 0.00 3.35
2811 3473 9.871175 AAACTTTAGGGAGAAAAATACTAACCA 57.129 29.630 0.00 0.00 0.00 3.67
2825 3487 2.224695 ACCCCGTTCAAACTTTAGGGAG 60.225 50.000 11.69 3.79 41.26 4.30
2827 3489 2.281539 ACCCCGTTCAAACTTTAGGG 57.718 50.000 0.00 0.00 39.09 3.53
2831 3493 3.568443 ACCATTACCCCGTTCAAACTTT 58.432 40.909 0.00 0.00 0.00 2.66
2841 3503 1.453197 GGCTGGAACCATTACCCCG 60.453 63.158 0.00 0.00 0.00 5.73
2843 3505 1.182667 GTTGGCTGGAACCATTACCC 58.817 55.000 0.00 0.00 40.13 3.69
2937 3599 7.746929 GCATATAATGATTGCCTTCAGTAGAC 58.253 38.462 0.00 0.00 30.60 2.59
2994 3656 8.725405 TGATTACCTAAGCAATCGAAAATACA 57.275 30.769 0.00 0.00 34.52 2.29
3074 3736 0.609957 TGGGCTGTGCAAAGATCTGG 60.610 55.000 8.49 0.00 0.00 3.86
3078 3740 3.700538 TCTAATTGGGCTGTGCAAAGAT 58.299 40.909 8.49 0.00 0.00 2.40
3089 3751 4.568956 AGCATGTTTTGTTCTAATTGGGC 58.431 39.130 0.00 0.00 0.00 5.36
3103 3765 7.800092 ACATATTCTCCTCTCTTAGCATGTTT 58.200 34.615 0.00 0.00 0.00 2.83
3268 3931 6.493802 TCTGACTTCTGTAACTACTGGATTGT 59.506 38.462 0.00 0.00 0.00 2.71
3272 3935 5.831525 TGTTCTGACTTCTGTAACTACTGGA 59.168 40.000 0.00 0.00 0.00 3.86
3414 4077 6.219417 TGGCCATAAATTTAACATGTCCAG 57.781 37.500 0.00 0.00 0.00 3.86
3431 4094 6.172630 GTGTTTCCATTAGAAATTTGGCCAT 58.827 36.000 6.09 0.00 45.99 4.40
3445 4108 5.200483 TGAGAAAGTTCTGGTGTTTCCATT 58.800 37.500 0.00 0.00 46.12 3.16
3668 4331 5.662674 ACCAACAGTATCTCCTAGAACAC 57.337 43.478 0.00 0.00 0.00 3.32
3681 4344 6.829298 TGGTTCATAAGACAAAACCAACAGTA 59.171 34.615 3.45 0.00 46.04 2.74
3739 4403 9.971922 AACCTCAACAATAATTTCTCTGAAAAG 57.028 29.630 0.00 0.00 0.00 2.27
3782 4446 5.877564 TCTGTCGTATGCCATAACAAAATCA 59.122 36.000 0.00 0.00 0.00 2.57
3810 4474 1.798813 CCACGTAGGTTGACTTTCAGC 59.201 52.381 0.00 0.00 0.00 4.26
3894 4558 8.986991 AGAACCAGATAGAGTTCATATTCAAGT 58.013 33.333 5.76 0.00 43.89 3.16
3921 4585 6.888632 AGCTGAAAAGAACATCATGACCTATT 59.111 34.615 0.00 0.00 0.00 1.73
3922 4586 6.421485 AGCTGAAAAGAACATCATGACCTAT 58.579 36.000 0.00 0.00 0.00 2.57
4077 4741 4.098894 AGGAAACATGGGAAAATCAGCAT 58.901 39.130 0.00 0.00 0.00 3.79
4139 4815 4.923415 AGGACCCCTGAAAAGAAATAGTG 58.077 43.478 0.00 0.00 29.57 2.74
4227 4903 2.159382 CCAAAGCAATCACGGGTAGTT 58.841 47.619 0.00 0.00 0.00 2.24
4257 4933 6.072342 TGACATCAATGAGTGATTCTGGTTTG 60.072 38.462 0.00 0.00 45.13 2.93
4307 4983 7.255001 CCGAACTTCACACCAAATTAACTAACT 60.255 37.037 0.00 0.00 0.00 2.24
4309 4985 6.016943 CCCGAACTTCACACCAAATTAACTAA 60.017 38.462 0.00 0.00 0.00 2.24
4332 5008 0.969409 AGCTCAATTGCCAGAAGCCC 60.969 55.000 11.33 0.00 42.71 5.19
4339 5015 6.380846 AGTCCAAAATATAAGCTCAATTGCCA 59.619 34.615 0.00 0.00 0.00 4.92
4386 5062 6.758886 GCTGCTGTCAAATGTACTACTCTATT 59.241 38.462 0.00 0.00 0.00 1.73
4393 5069 3.007940 ACCTGCTGCTGTCAAATGTACTA 59.992 43.478 0.00 0.00 0.00 1.82
4410 5086 5.584251 CCTTCTCTGATTTCTAAAGACCTGC 59.416 44.000 0.00 0.00 0.00 4.85
4454 5131 2.540101 CGCGACTGTCATTCCTAATTCC 59.460 50.000 0.00 0.00 0.00 3.01
4473 5151 0.593128 ACAAAATGGTCTGCACTCGC 59.407 50.000 0.00 0.00 39.24 5.03
4605 5285 4.097892 ACAATCCGGAAATCAATTGTAGCC 59.902 41.667 15.45 2.73 39.78 3.93
4606 5286 5.036737 CACAATCCGGAAATCAATTGTAGC 58.963 41.667 16.34 0.00 39.62 3.58
4611 5294 4.522405 TGTCACACAATCCGGAAATCAATT 59.478 37.500 9.01 0.00 0.00 2.32
4627 5310 4.931601 TCTTGCTAGAACATGATGTCACAC 59.068 41.667 0.00 0.00 0.00 3.82
4641 5324 4.526262 AGCTCTTCTTTCAGTCTTGCTAGA 59.474 41.667 0.00 0.00 0.00 2.43
4643 5326 4.881019 AGCTCTTCTTTCAGTCTTGCTA 57.119 40.909 0.00 0.00 0.00 3.49
4644 5327 3.767902 AGCTCTTCTTTCAGTCTTGCT 57.232 42.857 0.00 0.00 0.00 3.91
4646 5329 8.994429 TTATTCTAGCTCTTCTTTCAGTCTTG 57.006 34.615 0.00 0.00 0.00 3.02
4677 5360 3.993376 AATGGCGCGGCAAAGCATG 62.993 57.895 39.24 0.00 36.85 4.06
4678 5361 2.784889 AAAATGGCGCGGCAAAGCAT 62.785 50.000 39.24 20.23 36.85 3.79
4679 5362 2.147315 TAAAATGGCGCGGCAAAGCA 62.147 50.000 39.24 21.45 36.85 3.91
4680 5363 0.805711 ATAAAATGGCGCGGCAAAGC 60.806 50.000 39.24 4.66 0.00 3.51
4681 5364 1.199624 GATAAAATGGCGCGGCAAAG 58.800 50.000 39.24 0.00 0.00 2.77
4682 5365 0.179124 GGATAAAATGGCGCGGCAAA 60.179 50.000 39.24 23.88 0.00 3.68
4683 5366 1.034838 AGGATAAAATGGCGCGGCAA 61.035 50.000 39.24 23.51 0.00 4.52
4684 5367 1.034838 AAGGATAAAATGGCGCGGCA 61.035 50.000 37.91 37.91 0.00 5.69
4685 5368 0.594796 CAAGGATAAAATGGCGCGGC 60.595 55.000 27.61 27.61 0.00 6.53
4686 5369 0.738389 ACAAGGATAAAATGGCGCGG 59.262 50.000 8.83 0.00 0.00 6.46
4758 5441 1.089920 CTATCAAGTGGCAGTGTGGC 58.910 55.000 0.00 0.00 44.03 5.01
4759 5442 1.742761 CCTATCAAGTGGCAGTGTGG 58.257 55.000 0.00 0.00 0.00 4.17
4784 5467 7.857734 ACATCGTGGATTGTATTTTCATGTA 57.142 32.000 0.00 0.00 0.00 2.29
4880 5563 8.475639 TCCAAGTTATTATGTCACCTCTTCTAC 58.524 37.037 0.00 0.00 0.00 2.59
4910 5593 5.902981 GCAACATGCAAAACAACTGTTTATG 59.097 36.000 8.19 10.51 43.62 1.90
4956 6403 1.538047 TGAGCTGGGAAATTCAGTGC 58.462 50.000 0.00 0.00 34.89 4.40
4960 6407 4.262549 CCAAATGTTGAGCTGGGAAATTCA 60.263 41.667 0.00 0.00 0.00 2.57
5009 6456 0.841961 TGGCCCATCTCATCTGGAAG 59.158 55.000 0.00 0.00 35.70 3.46
5017 6464 1.243902 GTTCGTTTTGGCCCATCTCA 58.756 50.000 0.00 0.00 0.00 3.27
5019 6466 0.958822 GTGTTCGTTTTGGCCCATCT 59.041 50.000 0.00 0.00 0.00 2.90
5020 6467 0.038618 GGTGTTCGTTTTGGCCCATC 60.039 55.000 0.00 0.00 0.00 3.51
5021 6468 0.757188 TGGTGTTCGTTTTGGCCCAT 60.757 50.000 0.00 0.00 0.00 4.00
5047 6494 2.015456 TCATCACAGTGTCCAGACCT 57.985 50.000 0.00 0.00 0.00 3.85
5048 6495 2.808543 GTTTCATCACAGTGTCCAGACC 59.191 50.000 0.00 0.00 0.00 3.85
5058 6788 4.271696 TGGACTGTAGGTTTCATCACAG 57.728 45.455 0.00 0.00 43.21 3.66
5060 6790 4.003648 CCTTGGACTGTAGGTTTCATCAC 58.996 47.826 0.00 0.00 0.00 3.06
5072 6802 2.969821 TTTGGCATACCTTGGACTGT 57.030 45.000 0.00 0.00 36.63 3.55
5075 6805 5.600696 CCAATTATTTGGCATACCTTGGAC 58.399 41.667 3.53 0.00 45.71 4.02
5098 6883 4.652822 ACTTGATAAACAGTTGGTCCTCC 58.347 43.478 0.00 0.00 0.00 4.30
5127 6912 9.474313 ACATAACCTTGAGGATTATTTTGCTTA 57.526 29.630 3.59 0.00 38.94 3.09
5162 6948 1.915141 ATTGAAGGCAAGGGTCACAG 58.085 50.000 0.00 0.00 37.45 3.66
5169 6955 5.410439 CCATCTTGAAAAATTGAAGGCAAGG 59.590 40.000 0.00 0.00 37.45 3.61
5171 6957 5.759273 CACCATCTTGAAAAATTGAAGGCAA 59.241 36.000 0.00 0.00 38.60 4.52
5173 6959 5.299949 ACACCATCTTGAAAAATTGAAGGC 58.700 37.500 0.00 0.00 0.00 4.35
5177 8297 7.214467 GGTAGACACCATCTTGAAAAATTGA 57.786 36.000 0.00 0.00 45.04 2.57
5243 8363 4.105057 TGTCCTACACCCATTGTAAACCTT 59.895 41.667 0.00 0.00 40.33 3.50
5247 8367 4.400120 GGTTGTCCTACACCCATTGTAAA 58.600 43.478 0.00 0.00 40.33 2.01
5282 8402 0.532115 CTACATTTGCTTGTGCCCCC 59.468 55.000 0.00 0.00 38.71 5.40
5322 8442 3.914426 TGGACTTTGGCTTAGGATCTC 57.086 47.619 0.00 0.00 0.00 2.75
5350 8470 1.867363 AGTAGAGTGCCTAAGGTGGG 58.133 55.000 0.00 0.00 0.00 4.61
5360 8480 3.669251 AGAAGTGGTCAAGTAGAGTGC 57.331 47.619 0.00 0.00 0.00 4.40
5369 8489 6.833041 TGTAGGAAAATGTAGAAGTGGTCAA 58.167 36.000 0.00 0.00 0.00 3.18
5379 8499 7.095270 GGTACCGGATATGTAGGAAAATGTAG 58.905 42.308 9.46 0.00 0.00 2.74
5382 8502 5.860611 TGGTACCGGATATGTAGGAAAATG 58.139 41.667 9.46 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.