Multiple sequence alignment - TraesCS7A01G533300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G533300 chr7A 100.000 2472 0 0 1 2472 711901286 711898815 0.000000e+00 4566.0
1 TraesCS7A01G533300 chr7A 94.533 567 26 4 769 1333 711907410 711906847 0.000000e+00 870.0
2 TraesCS7A01G533300 chr7A 94.943 435 21 1 2039 2472 115808578 115809012 0.000000e+00 680.0
3 TraesCS7A01G533300 chr7A 83.983 231 29 6 1795 2017 197169468 197169698 5.350000e-52 215.0
4 TraesCS7A01G533300 chr7B 87.085 1324 110 34 736 2041 712495599 712494319 0.000000e+00 1441.0
5 TraesCS7A01G533300 chr7B 94.943 435 21 1 2039 2472 433476714 433476280 0.000000e+00 680.0
6 TraesCS7A01G533300 chr7B 83.288 371 46 7 99 467 712502084 712501728 6.590000e-86 327.0
7 TraesCS7A01G533300 chr7B 82.011 189 31 2 1787 1974 559536833 559537019 9.150000e-35 158.0
8 TraesCS7A01G533300 chr7B 84.722 72 11 0 1726 1797 715299907 715299836 3.410000e-09 73.1
9 TraesCS7A01G533300 chr7D 93.127 582 31 4 967 1547 618166520 618165947 0.000000e+00 845.0
10 TraesCS7A01G533300 chr7D 81.152 764 108 21 1 740 618167570 618166819 4.580000e-162 580.0
11 TraesCS7A01G533300 chr7D 88.937 461 34 8 1586 2041 618165663 618165215 9.990000e-154 553.0
12 TraesCS7A01G533300 chr7D 90.476 126 9 3 750 874 618166752 618166629 1.970000e-36 163.0
13 TraesCS7A01G533300 chr2B 95.150 433 20 1 2041 2472 151873487 151873055 0.000000e+00 682.0
14 TraesCS7A01G533300 chr2B 87.342 158 18 2 1795 1952 776232297 776232452 1.950000e-41 180.0
15 TraesCS7A01G533300 chrUn 94.919 433 21 1 2041 2472 377047456 377047024 0.000000e+00 676.0
16 TraesCS7A01G533300 chrUn 94.919 433 21 1 2041 2472 419797222 419796790 0.000000e+00 676.0
17 TraesCS7A01G533300 chr6B 94.919 433 21 1 2041 2472 713262391 713262823 0.000000e+00 676.0
18 TraesCS7A01G533300 chr6B 80.702 228 36 5 1820 2041 703307088 703307313 1.180000e-38 171.0
19 TraesCS7A01G533300 chr4B 94.919 433 21 1 2041 2472 148647731 148647299 0.000000e+00 676.0
20 TraesCS7A01G533300 chr1A 94.919 433 21 1 2041 2472 491264688 491265120 0.000000e+00 676.0
21 TraesCS7A01G533300 chr3B 93.933 445 24 3 2031 2472 685636699 685636255 0.000000e+00 669.0
22 TraesCS7A01G533300 chr2D 82.731 249 36 6 1795 2041 577685346 577685589 5.350000e-52 215.0
23 TraesCS7A01G533300 chr3D 83.516 182 28 1 1793 1974 23721852 23721673 4.230000e-38 169.0
24 TraesCS7A01G533300 chr6D 78.226 248 42 11 1793 2035 24617640 24617400 5.510000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G533300 chr7A 711898815 711901286 2471 True 4566.00 4566 100.000 1 2472 1 chr7A.!!$R1 2471
1 TraesCS7A01G533300 chr7A 711906847 711907410 563 True 870.00 870 94.533 769 1333 1 chr7A.!!$R2 564
2 TraesCS7A01G533300 chr7B 712494319 712495599 1280 True 1441.00 1441 87.085 736 2041 1 chr7B.!!$R2 1305
3 TraesCS7A01G533300 chr7D 618165215 618167570 2355 True 535.25 845 88.423 1 2041 4 chr7D.!!$R1 2040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 431 0.034896 TGGACCGAAGAAGACAAGGC 59.965 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2605 0.034756 GCCCATTTTTCACCACACCC 59.965 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.321387 CCATCTCCATGGCTCCATCG 60.321 60.000 6.96 0.00 43.55 3.84
37 38 3.532155 GCTCCATCGCCGTCCTCT 61.532 66.667 0.00 0.00 0.00 3.69
40 41 3.917760 CCATCGCCGTCCTCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
42 43 4.144727 ATCGCCGTCCTCTCCCCT 62.145 66.667 0.00 0.00 0.00 4.79
43 44 4.816984 TCGCCGTCCTCTCCCCTC 62.817 72.222 0.00 0.00 0.00 4.30
45 46 4.779733 GCCGTCCTCTCCCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
46 47 2.283809 CCGTCCTCTCCCCTCCAT 59.716 66.667 0.00 0.00 0.00 3.41
48 49 2.196925 CGTCCTCTCCCCTCCATCG 61.197 68.421 0.00 0.00 0.00 3.84
49 50 1.075896 GTCCTCTCCCCTCCATCGT 60.076 63.158 0.00 0.00 0.00 3.73
50 51 1.075970 TCCTCTCCCCTCCATCGTG 60.076 63.158 0.00 0.00 0.00 4.35
53 54 0.461961 CTCTCCCCTCCATCGTGTTC 59.538 60.000 0.00 0.00 0.00 3.18
54 55 0.252057 TCTCCCCTCCATCGTGTTCA 60.252 55.000 0.00 0.00 0.00 3.18
64 69 2.419990 CCATCGTGTTCATAGAGCCCAA 60.420 50.000 0.00 0.00 0.00 4.12
67 72 1.066143 CGTGTTCATAGAGCCCAAGGT 60.066 52.381 0.00 0.00 0.00 3.50
71 76 2.772515 GTTCATAGAGCCCAAGGTAGGT 59.227 50.000 0.00 0.00 0.00 3.08
72 77 2.398588 TCATAGAGCCCAAGGTAGGTG 58.601 52.381 0.00 0.00 0.00 4.00
77 82 1.378646 GCCCAAGGTAGGTGCTTCC 60.379 63.158 0.00 0.00 0.00 3.46
80 85 0.541863 CCAAGGTAGGTGCTTCCGAT 59.458 55.000 0.00 0.00 41.99 4.18
81 86 1.656652 CAAGGTAGGTGCTTCCGATG 58.343 55.000 0.00 0.00 41.99 3.84
84 89 0.179081 GGTAGGTGCTTCCGATGGTC 60.179 60.000 0.00 0.00 41.99 4.02
89 94 1.886542 GGTGCTTCCGATGGTCTTTTT 59.113 47.619 0.00 0.00 0.00 1.94
94 99 3.872630 GCTTCCGATGGTCTTTTTAGGGT 60.873 47.826 0.00 0.00 0.00 4.34
97 102 1.743394 CGATGGTCTTTTTAGGGTGGC 59.257 52.381 0.00 0.00 0.00 5.01
99 104 0.891904 TGGTCTTTTTAGGGTGGCGC 60.892 55.000 0.00 0.00 0.00 6.53
106 111 3.636313 TTAGGGTGGCGCGAACTCG 62.636 63.158 12.10 0.00 43.27 4.18
117 122 2.046864 CGAACTCGCCTCCTCAGGA 61.047 63.158 0.00 0.00 43.65 3.86
152 157 2.004583 TCCTACATTGAAAGGCGACG 57.995 50.000 0.00 0.00 32.55 5.12
157 162 1.072505 ATTGAAAGGCGACGGTGGT 59.927 52.632 0.00 0.00 0.00 4.16
158 163 0.536460 ATTGAAAGGCGACGGTGGTT 60.536 50.000 0.00 0.00 0.00 3.67
162 167 2.035237 AAAGGCGACGGTGGTTGAGA 62.035 55.000 0.00 0.00 0.00 3.27
165 170 1.080093 GCGACGGTGGTTGAGATGA 60.080 57.895 0.00 0.00 0.00 2.92
175 180 4.521146 GTGGTTGAGATGAGATTGTGGAT 58.479 43.478 0.00 0.00 0.00 3.41
182 187 6.138967 TGAGATGAGATTGTGGATAAGAGGA 58.861 40.000 0.00 0.00 0.00 3.71
190 195 3.469859 TGTGGATAAGAGGATTTGGGGA 58.530 45.455 0.00 0.00 0.00 4.81
192 197 3.716872 GTGGATAAGAGGATTTGGGGAGA 59.283 47.826 0.00 0.00 0.00 3.71
244 249 3.071874 CCACAAGATGGGCTTCTTACA 57.928 47.619 3.51 0.00 45.95 2.41
252 257 5.140454 AGATGGGCTTCTTACAGTGTTTTT 58.860 37.500 0.00 0.00 0.00 1.94
253 258 4.647424 TGGGCTTCTTACAGTGTTTTTG 57.353 40.909 0.00 0.00 0.00 2.44
269 274 0.923358 TTTGGGGTGGTGTGAACTCT 59.077 50.000 0.00 0.00 0.00 3.24
270 275 0.182537 TTGGGGTGGTGTGAACTCTG 59.817 55.000 0.00 0.00 0.00 3.35
272 277 1.451936 GGGTGGTGTGAACTCTGCT 59.548 57.895 0.00 0.00 0.00 4.24
285 290 0.461961 CTCTGCTTCCTTAGGGGTCG 59.538 60.000 0.00 0.00 36.25 4.79
287 292 1.229400 TGCTTCCTTAGGGGTCGGT 60.229 57.895 0.00 0.00 36.25 4.69
289 294 1.221021 CTTCCTTAGGGGTCGGTGC 59.779 63.158 0.00 0.00 36.25 5.01
321 326 2.203070 CTAGATGGTGGCGGTGGC 60.203 66.667 0.00 0.00 38.90 5.01
351 356 1.882623 GTTGTTGAGGAGAGGCTTTGG 59.117 52.381 0.00 0.00 0.00 3.28
353 358 0.693049 GTTGAGGAGAGGCTTTGGGA 59.307 55.000 0.00 0.00 0.00 4.37
359 364 1.854507 AGAGGCTTTGGGAAGGGCT 60.855 57.895 0.00 0.00 38.56 5.19
383 388 1.771255 GGAGGCAGTCTACAATGGGAT 59.229 52.381 0.00 0.00 0.00 3.85
387 392 2.486191 GGCAGTCTACAATGGGATCCTG 60.486 54.545 12.58 4.69 0.00 3.86
396 401 2.041819 GGGATCCTGGGAGACGGT 60.042 66.667 12.58 0.00 0.00 4.83
400 405 0.185416 GATCCTGGGAGACGGTAGGA 59.815 60.000 0.00 0.00 43.01 2.94
404 411 1.207329 CCTGGGAGACGGTAGGAAAAG 59.793 57.143 0.00 0.00 31.91 2.27
409 416 2.353505 GGAGACGGTAGGAAAAGTGGAC 60.354 54.545 0.00 0.00 0.00 4.02
410 417 1.622312 AGACGGTAGGAAAAGTGGACC 59.378 52.381 0.00 0.00 0.00 4.46
418 425 2.704065 AGGAAAAGTGGACCGAAGAAGA 59.296 45.455 0.00 0.00 0.00 2.87
421 428 3.553828 AAAGTGGACCGAAGAAGACAA 57.446 42.857 0.00 0.00 0.00 3.18
424 431 0.034896 TGGACCGAAGAAGACAAGGC 59.965 55.000 0.00 0.00 0.00 4.35
428 435 1.630244 CCGAAGAAGACAAGGCTGCG 61.630 60.000 0.00 0.00 0.00 5.18
435 442 2.032681 ACAAGGCTGCGGAGGAAC 59.967 61.111 5.93 0.00 0.00 3.62
455 462 1.750193 GCGGGTGGATGAGAATTTGA 58.250 50.000 0.00 0.00 0.00 2.69
464 471 1.790755 TGAGAATTTGACGGTGGTCG 58.209 50.000 0.00 0.00 46.49 4.79
481 488 2.421529 GGTCGTTTTATCCCTGGCATCT 60.422 50.000 0.00 0.00 0.00 2.90
501 508 0.174162 GCCTCATCCATTGTGGTTGC 59.826 55.000 2.83 0.00 40.46 4.17
503 510 1.167851 CTCATCCATTGTGGTTGCGT 58.832 50.000 2.83 0.00 37.20 5.24
506 513 0.251121 ATCCATTGTGGTTGCGTGGA 60.251 50.000 0.00 0.00 42.62 4.02
513 520 1.891919 TGGTTGCGTGGAAGTGAGC 60.892 57.895 0.00 0.00 0.00 4.26
522 529 0.178068 TGGAAGTGAGCGGGATAAGC 59.822 55.000 0.00 0.00 0.00 3.09
528 535 1.069935 GAGCGGGATAAGCTGGTCC 59.930 63.158 8.75 8.75 46.13 4.46
581 588 2.196295 TTTTGAGAAAACGCAACCCG 57.804 45.000 0.00 0.00 44.21 5.28
586 596 1.007849 GAAAACGCAACCCGCACAT 60.008 52.632 0.00 0.00 42.60 3.21
587 597 1.274798 GAAAACGCAACCCGCACATG 61.275 55.000 0.00 0.00 42.60 3.21
598 608 0.940833 CCGCACATGTACACACACAA 59.059 50.000 0.00 0.00 37.54 3.33
602 612 3.554524 GCACATGTACACACACAATCAC 58.445 45.455 0.00 0.00 37.54 3.06
612 622 2.073816 CACACAATCACCCCTACGAAC 58.926 52.381 0.00 0.00 0.00 3.95
613 623 1.695242 ACACAATCACCCCTACGAACA 59.305 47.619 0.00 0.00 0.00 3.18
614 624 2.289444 ACACAATCACCCCTACGAACAG 60.289 50.000 0.00 0.00 0.00 3.16
616 626 2.635915 ACAATCACCCCTACGAACAGAA 59.364 45.455 0.00 0.00 0.00 3.02
620 630 0.320697 ACCCCTACGAACAGAAGCAC 59.679 55.000 0.00 0.00 0.00 4.40
622 632 0.736325 CCCTACGAACAGAAGCACGG 60.736 60.000 0.00 0.00 0.00 4.94
623 633 0.038526 CCTACGAACAGAAGCACGGT 60.039 55.000 0.00 0.00 0.00 4.83
624 634 1.604693 CCTACGAACAGAAGCACGGTT 60.605 52.381 0.00 0.11 39.38 4.44
625 635 2.132762 CTACGAACAGAAGCACGGTTT 58.867 47.619 0.00 0.00 37.07 3.27
626 636 1.375551 ACGAACAGAAGCACGGTTTT 58.624 45.000 0.00 0.00 37.07 2.43
627 637 1.741145 ACGAACAGAAGCACGGTTTTT 59.259 42.857 0.00 0.00 37.07 1.94
628 638 2.108700 CGAACAGAAGCACGGTTTTTG 58.891 47.619 0.00 0.00 37.07 2.44
629 639 2.477189 CGAACAGAAGCACGGTTTTTGT 60.477 45.455 0.00 0.00 37.07 2.83
697 724 3.181440 ACTTGGCTCCTCATTTTGTCTCA 60.181 43.478 0.00 0.00 0.00 3.27
699 726 3.349927 TGGCTCCTCATTTTGTCTCATG 58.650 45.455 0.00 0.00 0.00 3.07
714 741 0.107214 TCATGGGCCGGTCAGAAATC 60.107 55.000 9.07 0.00 0.00 2.17
724 751 1.084370 GTCAGAAATCGGGCCGTGAG 61.084 60.000 27.32 11.12 0.00 3.51
725 752 1.079127 CAGAAATCGGGCCGTGAGT 60.079 57.895 27.32 9.91 0.00 3.41
877 965 1.472480 GTATGCAAAGGCCACGTTGAT 59.528 47.619 15.74 9.60 38.17 2.57
890 978 4.025730 GCCACGTTGATCATATGTGTAGTG 60.026 45.833 19.70 7.10 31.98 2.74
898 986 9.967346 GTTGATCATATGTGTAGTGTAGTGTAT 57.033 33.333 1.90 0.00 0.00 2.29
967 1056 4.724501 TGCATTGCCGGCCCGTAA 62.725 61.111 26.77 12.32 0.00 3.18
968 1057 3.444805 GCATTGCCGGCCCGTAAA 61.445 61.111 26.77 11.87 0.00 2.01
993 1126 2.872245 CAAGCGAAAGAAGAAGACACCA 59.128 45.455 0.00 0.00 0.00 4.17
1016 1149 2.492012 GGTCATGGCAGCTATGAAGAG 58.508 52.381 22.02 0.00 36.41 2.85
1035 1168 1.208052 AGGACCAACACGAGGATCATG 59.792 52.381 0.00 0.00 33.17 3.07
1085 1218 0.467106 CTCCTCATCTCCTCTGCCGA 60.467 60.000 0.00 0.00 0.00 5.54
1171 1304 5.399892 CGTAGGCAGAGAATTTCGTATCTTC 59.600 44.000 0.00 0.00 0.00 2.87
1183 1316 5.759506 TTCGTATCTTCTTGGTTTTTGCA 57.240 34.783 0.00 0.00 0.00 4.08
1200 1333 1.953686 TGCACCAACCTGAAAGCTAAC 59.046 47.619 0.00 0.00 0.00 2.34
1221 1354 5.508200 ACGTTGAAGCAATTTTTCCTACA 57.492 34.783 0.00 0.00 0.00 2.74
1466 1599 1.360192 GCCACAAACGAAGCTGCTT 59.640 52.632 15.92 15.92 0.00 3.91
1488 1621 9.965902 TGCTTCATGATGATACTAGATCTACTA 57.034 33.333 12.54 0.00 0.00 1.82
1533 1666 3.056607 TGAGCTACTACCCGTTTTGGTAC 60.057 47.826 0.00 0.00 39.91 3.34
1534 1667 2.899256 AGCTACTACCCGTTTTGGTACA 59.101 45.455 0.00 0.00 39.91 2.90
1536 1669 2.549064 ACTACCCGTTTTGGTACACC 57.451 50.000 0.00 0.00 39.29 4.16
1567 1711 2.687935 ACATTTTGGTGGTGACAGTGTC 59.312 45.455 16.68 16.68 44.46 3.67
1571 1715 2.375014 TGGTGGTGACAGTGTCTCTA 57.625 50.000 23.29 15.28 44.46 2.43
1607 1996 2.462456 TGAGAAGATGTGTGGTCTGC 57.538 50.000 0.00 0.00 0.00 4.26
1616 2005 1.946768 TGTGTGGTCTGCTGCTTAAAC 59.053 47.619 0.00 0.00 0.00 2.01
1627 2016 4.393834 TGCTGCTTAAACTATTGTGGTCA 58.606 39.130 0.00 0.00 0.00 4.02
1635 2024 7.651704 GCTTAAACTATTGTGGTCATGTTTTGT 59.348 33.333 0.00 0.00 0.00 2.83
1644 2033 4.499040 GTGGTCATGTTTTGTTTGAACGAG 59.501 41.667 0.00 0.00 29.49 4.18
1704 2094 0.179043 TTTGCGCTGGTGTACCTGAA 60.179 50.000 9.73 0.00 37.15 3.02
1753 2143 9.754382 ATTTTTGGAATATCGAATCTTTCATGG 57.246 29.630 0.00 0.00 0.00 3.66
1954 2346 8.477984 AAATTTCATCCACAAATAACATTCGG 57.522 30.769 0.00 0.00 0.00 4.30
1957 2349 2.729194 TCCACAAATAACATTCGGGGG 58.271 47.619 0.00 0.00 0.00 5.40
1999 2391 8.715191 TCATTTACTGAAAAAGTGCACAAAAT 57.285 26.923 21.04 1.86 40.26 1.82
2011 2403 4.584325 AGTGCACAAAATATTGACCAGTGT 59.416 37.500 21.04 0.00 38.94 3.55
2041 2437 0.105224 TTGTTGAGGGCTCGTCGAAA 59.895 50.000 0.00 0.00 0.00 3.46
2042 2438 0.599204 TGTTGAGGGCTCGTCGAAAC 60.599 55.000 0.00 0.00 0.00 2.78
2043 2439 0.319641 GTTGAGGGCTCGTCGAAACT 60.320 55.000 0.00 0.00 0.00 2.66
2044 2440 0.038526 TTGAGGGCTCGTCGAAACTC 60.039 55.000 11.46 11.46 0.00 3.01
2045 2441 1.153804 GAGGGCTCGTCGAAACTCC 60.154 63.158 0.00 0.00 0.00 3.85
2046 2442 1.874345 GAGGGCTCGTCGAAACTCCA 61.874 60.000 0.00 0.00 0.00 3.86
2047 2443 1.737008 GGGCTCGTCGAAACTCCAC 60.737 63.158 0.00 0.00 0.00 4.02
2048 2444 1.737008 GGCTCGTCGAAACTCCACC 60.737 63.158 0.00 0.00 0.00 4.61
2049 2445 1.289380 GCTCGTCGAAACTCCACCT 59.711 57.895 0.00 0.00 0.00 4.00
2050 2446 0.524862 GCTCGTCGAAACTCCACCTA 59.475 55.000 0.00 0.00 0.00 3.08
2051 2447 1.134560 GCTCGTCGAAACTCCACCTAT 59.865 52.381 0.00 0.00 0.00 2.57
2052 2448 2.798680 CTCGTCGAAACTCCACCTATG 58.201 52.381 0.00 0.00 0.00 2.23
2053 2449 2.163815 CTCGTCGAAACTCCACCTATGT 59.836 50.000 0.00 0.00 0.00 2.29
2054 2450 2.559668 TCGTCGAAACTCCACCTATGTT 59.440 45.455 0.00 0.00 0.00 2.71
2055 2451 2.666508 CGTCGAAACTCCACCTATGTTG 59.333 50.000 0.00 0.00 0.00 3.33
2056 2452 3.660865 GTCGAAACTCCACCTATGTTGT 58.339 45.455 0.00 0.00 0.00 3.32
2057 2453 3.678548 GTCGAAACTCCACCTATGTTGTC 59.321 47.826 0.00 0.00 0.00 3.18
2058 2454 3.576982 TCGAAACTCCACCTATGTTGTCT 59.423 43.478 0.00 0.00 0.00 3.41
2059 2455 3.927142 CGAAACTCCACCTATGTTGTCTC 59.073 47.826 0.00 0.00 0.00 3.36
2060 2456 4.560716 CGAAACTCCACCTATGTTGTCTCA 60.561 45.833 0.00 0.00 0.00 3.27
2061 2457 4.974645 AACTCCACCTATGTTGTCTCAA 57.025 40.909 0.00 0.00 0.00 3.02
2062 2458 4.273148 ACTCCACCTATGTTGTCTCAAC 57.727 45.455 5.78 5.78 0.00 3.18
2063 2459 3.646162 ACTCCACCTATGTTGTCTCAACA 59.354 43.478 15.83 15.83 34.31 3.33
2064 2460 4.287067 ACTCCACCTATGTTGTCTCAACAT 59.713 41.667 24.50 24.50 42.82 2.71
2065 2461 5.483937 ACTCCACCTATGTTGTCTCAACATA 59.516 40.000 24.21 24.21 40.87 2.29
2070 2466 2.093306 TGTTGTCTCAACATAGCCGG 57.907 50.000 10.63 0.00 34.73 6.13
2071 2467 1.346395 TGTTGTCTCAACATAGCCGGT 59.654 47.619 1.90 0.00 34.73 5.28
2072 2468 2.000447 GTTGTCTCAACATAGCCGGTC 59.000 52.381 1.90 0.00 34.73 4.79
2073 2469 0.535335 TGTCTCAACATAGCCGGTCC 59.465 55.000 1.90 0.00 0.00 4.46
2074 2470 0.179081 GTCTCAACATAGCCGGTCCC 60.179 60.000 1.90 0.00 0.00 4.46
2075 2471 0.616395 TCTCAACATAGCCGGTCCCA 60.616 55.000 1.90 0.00 0.00 4.37
2076 2472 0.251916 CTCAACATAGCCGGTCCCAA 59.748 55.000 1.90 0.00 0.00 4.12
2077 2473 0.251916 TCAACATAGCCGGTCCCAAG 59.748 55.000 1.90 0.00 0.00 3.61
2078 2474 1.077716 AACATAGCCGGTCCCAAGC 60.078 57.895 1.90 0.00 0.00 4.01
2079 2475 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
2080 2476 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
2089 2485 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
2090 2486 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
2091 2487 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
2092 2488 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
2093 2489 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
2094 2490 0.623617 AAGCCCGGGTAAAGGAGGAT 60.624 55.000 24.63 0.00 0.00 3.24
2095 2491 1.148498 GCCCGGGTAAAGGAGGATG 59.852 63.158 24.63 0.00 0.00 3.51
2096 2492 1.837090 CCCGGGTAAAGGAGGATGG 59.163 63.158 14.18 0.00 0.00 3.51
2097 2493 0.986550 CCCGGGTAAAGGAGGATGGT 60.987 60.000 14.18 0.00 0.00 3.55
2098 2494 0.916809 CCGGGTAAAGGAGGATGGTT 59.083 55.000 0.00 0.00 0.00 3.67
2099 2495 1.408266 CCGGGTAAAGGAGGATGGTTG 60.408 57.143 0.00 0.00 0.00 3.77
2100 2496 1.280998 CGGGTAAAGGAGGATGGTTGT 59.719 52.381 0.00 0.00 0.00 3.32
2101 2497 2.723273 GGGTAAAGGAGGATGGTTGTG 58.277 52.381 0.00 0.00 0.00 3.33
2102 2498 2.307686 GGGTAAAGGAGGATGGTTGTGA 59.692 50.000 0.00 0.00 0.00 3.58
2103 2499 3.053619 GGGTAAAGGAGGATGGTTGTGAT 60.054 47.826 0.00 0.00 0.00 3.06
2104 2500 4.165372 GGGTAAAGGAGGATGGTTGTGATA 59.835 45.833 0.00 0.00 0.00 2.15
2105 2501 5.368989 GGTAAAGGAGGATGGTTGTGATAG 58.631 45.833 0.00 0.00 0.00 2.08
2106 2502 4.510167 AAAGGAGGATGGTTGTGATAGG 57.490 45.455 0.00 0.00 0.00 2.57
2107 2503 1.771255 AGGAGGATGGTTGTGATAGGC 59.229 52.381 0.00 0.00 0.00 3.93
2108 2504 1.771255 GGAGGATGGTTGTGATAGGCT 59.229 52.381 0.00 0.00 0.00 4.58
2109 2505 2.173569 GGAGGATGGTTGTGATAGGCTT 59.826 50.000 0.00 0.00 0.00 4.35
2110 2506 3.209410 GAGGATGGTTGTGATAGGCTTG 58.791 50.000 0.00 0.00 0.00 4.01
2111 2507 2.092212 AGGATGGTTGTGATAGGCTTGG 60.092 50.000 0.00 0.00 0.00 3.61
2112 2508 1.678101 GATGGTTGTGATAGGCTTGGC 59.322 52.381 0.00 0.00 0.00 4.52
2113 2509 0.676466 TGGTTGTGATAGGCTTGGCG 60.676 55.000 0.00 0.00 0.00 5.69
2114 2510 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2115 2511 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2123 2519 4.789075 GCTTGGCGAGCCGACGTA 62.789 66.667 16.21 0.00 46.01 3.57
2124 2520 2.126228 CTTGGCGAGCCGACGTAA 60.126 61.111 9.78 0.00 37.93 3.18
2125 2521 1.735198 CTTGGCGAGCCGACGTAAA 60.735 57.895 9.78 0.00 37.93 2.01
2126 2522 1.286354 CTTGGCGAGCCGACGTAAAA 61.286 55.000 9.78 0.00 37.93 1.52
2127 2523 0.879400 TTGGCGAGCCGACGTAAAAA 60.879 50.000 9.78 0.00 37.93 1.94
2128 2524 1.131218 GGCGAGCCGACGTAAAAAC 59.869 57.895 0.00 0.00 35.59 2.43
2129 2525 1.287041 GGCGAGCCGACGTAAAAACT 61.287 55.000 0.00 0.00 35.59 2.66
2130 2526 0.092519 GCGAGCCGACGTAAAAACTC 59.907 55.000 0.00 0.00 35.59 3.01
2131 2527 1.411394 CGAGCCGACGTAAAAACTCA 58.589 50.000 0.00 0.00 0.00 3.41
2132 2528 1.385743 CGAGCCGACGTAAAAACTCAG 59.614 52.381 0.00 0.00 0.00 3.35
2133 2529 1.126296 GAGCCGACGTAAAAACTCAGC 59.874 52.381 0.00 0.00 0.00 4.26
2134 2530 0.165295 GCCGACGTAAAAACTCAGCC 59.835 55.000 0.00 0.00 0.00 4.85
2135 2531 1.504359 CCGACGTAAAAACTCAGCCA 58.496 50.000 0.00 0.00 0.00 4.75
2136 2532 1.193874 CCGACGTAAAAACTCAGCCAC 59.806 52.381 0.00 0.00 0.00 5.01
2137 2533 2.132762 CGACGTAAAAACTCAGCCACT 58.867 47.619 0.00 0.00 0.00 4.00
2138 2534 2.155155 CGACGTAAAAACTCAGCCACTC 59.845 50.000 0.00 0.00 0.00 3.51
2139 2535 3.391049 GACGTAAAAACTCAGCCACTCT 58.609 45.455 0.00 0.00 0.00 3.24
2140 2536 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
2141 2537 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
2142 2538 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
2143 2539 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
2144 2540 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
2145 2541 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
2146 2542 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
2147 2543 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
2148 2544 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
2149 2545 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
2150 2546 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
2151 2547 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
2152 2548 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
2153 2549 5.131642 TCAGCCACTCTTATGGAGATGAAAT 59.868 40.000 0.00 0.00 44.45 2.17
2154 2550 5.469421 CAGCCACTCTTATGGAGATGAAATC 59.531 44.000 0.00 0.00 44.45 2.17
2155 2551 4.759183 GCCACTCTTATGGAGATGAAATCC 59.241 45.833 0.00 0.00 44.45 3.01
2173 2569 4.535526 ATCCAAAAGATTTTCGTTGGGG 57.464 40.909 10.95 2.28 37.18 4.96
2174 2570 2.036604 TCCAAAAGATTTTCGTTGGGGC 59.963 45.455 10.95 0.00 37.18 5.80
2175 2571 2.058057 CAAAAGATTTTCGTTGGGGCG 58.942 47.619 0.00 0.00 0.00 6.13
2176 2572 1.324383 AAAGATTTTCGTTGGGGCGT 58.676 45.000 0.00 0.00 0.00 5.68
2177 2573 2.188062 AAGATTTTCGTTGGGGCGTA 57.812 45.000 0.00 0.00 0.00 4.42
2178 2574 2.188062 AGATTTTCGTTGGGGCGTAA 57.812 45.000 0.00 0.00 0.00 3.18
2179 2575 1.808343 AGATTTTCGTTGGGGCGTAAC 59.192 47.619 0.00 0.00 0.00 2.50
2180 2576 0.883153 ATTTTCGTTGGGGCGTAACC 59.117 50.000 0.00 0.00 37.93 2.85
2189 2585 4.180496 GGCGTAACCCTCTCAACG 57.820 61.111 0.00 0.00 38.34 4.10
2190 2586 1.588082 GGCGTAACCCTCTCAACGA 59.412 57.895 0.00 0.00 37.53 3.85
2191 2587 0.735287 GGCGTAACCCTCTCAACGAC 60.735 60.000 0.00 0.00 37.53 4.34
2192 2588 1.069378 GCGTAACCCTCTCAACGACG 61.069 60.000 0.00 0.00 37.53 5.12
2193 2589 1.069378 CGTAACCCTCTCAACGACGC 61.069 60.000 0.00 0.00 37.53 5.19
2194 2590 1.069378 GTAACCCTCTCAACGACGCG 61.069 60.000 3.53 3.53 0.00 6.01
2195 2591 2.807631 TAACCCTCTCAACGACGCGC 62.808 60.000 5.73 0.00 0.00 6.86
2197 2593 4.717629 CCTCTCAACGACGCGCCA 62.718 66.667 5.73 0.00 0.00 5.69
2198 2594 3.470567 CTCTCAACGACGCGCCAC 61.471 66.667 5.73 0.00 0.00 5.01
2199 2595 4.273257 TCTCAACGACGCGCCACA 62.273 61.111 5.73 0.00 0.00 4.17
2200 2596 3.112075 CTCAACGACGCGCCACAT 61.112 61.111 5.73 0.00 0.00 3.21
2201 2597 3.071459 CTCAACGACGCGCCACATC 62.071 63.158 5.73 0.00 0.00 3.06
2202 2598 4.483683 CAACGACGCGCCACATCG 62.484 66.667 5.73 10.68 40.51 3.84
2206 2602 3.849953 GACGCGCCACATCGGAAC 61.850 66.667 5.73 0.00 36.56 3.62
2219 2615 3.562232 GGAACCCGGGTGTGGTGA 61.562 66.667 31.05 0.00 35.88 4.02
2220 2616 2.511900 GAACCCGGGTGTGGTGAA 59.488 61.111 31.05 0.00 35.88 3.18
2221 2617 1.152922 GAACCCGGGTGTGGTGAAA 60.153 57.895 31.05 0.00 35.88 2.69
2222 2618 0.752376 GAACCCGGGTGTGGTGAAAA 60.752 55.000 31.05 0.00 35.88 2.29
2223 2619 0.324460 AACCCGGGTGTGGTGAAAAA 60.324 50.000 31.05 0.00 35.88 1.94
2224 2620 0.105913 ACCCGGGTGTGGTGAAAAAT 60.106 50.000 29.69 0.00 33.94 1.82
2225 2621 0.316841 CCCGGGTGTGGTGAAAAATG 59.683 55.000 14.18 0.00 0.00 2.32
2226 2622 0.316841 CCGGGTGTGGTGAAAAATGG 59.683 55.000 0.00 0.00 0.00 3.16
2227 2623 0.316841 CGGGTGTGGTGAAAAATGGG 59.683 55.000 0.00 0.00 0.00 4.00
2228 2624 0.034756 GGGTGTGGTGAAAAATGGGC 59.965 55.000 0.00 0.00 0.00 5.36
2229 2625 0.755686 GGTGTGGTGAAAAATGGGCA 59.244 50.000 0.00 0.00 0.00 5.36
2230 2626 1.139853 GGTGTGGTGAAAAATGGGCAA 59.860 47.619 0.00 0.00 0.00 4.52
2231 2627 2.482864 GTGTGGTGAAAAATGGGCAAG 58.517 47.619 0.00 0.00 0.00 4.01
2232 2628 1.415659 TGTGGTGAAAAATGGGCAAGG 59.584 47.619 0.00 0.00 0.00 3.61
2233 2629 1.055040 TGGTGAAAAATGGGCAAGGG 58.945 50.000 0.00 0.00 0.00 3.95
2234 2630 0.321564 GGTGAAAAATGGGCAAGGGC 60.322 55.000 0.00 0.00 40.13 5.19
2273 2669 1.882912 TGGTGCGCCATATCTTGATC 58.117 50.000 16.89 0.00 40.46 2.92
2274 2670 1.160137 GGTGCGCCATATCTTGATCC 58.840 55.000 12.58 0.00 34.09 3.36
2275 2671 0.792640 GTGCGCCATATCTTGATCCG 59.207 55.000 4.18 0.00 0.00 4.18
2276 2672 0.320683 TGCGCCATATCTTGATCCGG 60.321 55.000 4.18 0.00 0.00 5.14
2277 2673 0.037326 GCGCCATATCTTGATCCGGA 60.037 55.000 6.61 6.61 0.00 5.14
2278 2674 1.406069 GCGCCATATCTTGATCCGGAT 60.406 52.381 19.21 19.21 0.00 4.18
2279 2675 2.159099 GCGCCATATCTTGATCCGGATA 60.159 50.000 19.15 1.03 0.00 2.59
2280 2676 3.448686 CGCCATATCTTGATCCGGATAC 58.551 50.000 19.15 11.72 0.00 2.24
2293 2689 3.065575 GGATACGGTGGCAAGTGAG 57.934 57.895 7.07 0.00 0.00 3.51
2294 2690 1.090052 GGATACGGTGGCAAGTGAGC 61.090 60.000 7.07 0.00 0.00 4.26
2295 2691 1.421410 GATACGGTGGCAAGTGAGCG 61.421 60.000 7.07 0.00 38.97 5.03
2296 2692 1.884075 ATACGGTGGCAAGTGAGCGA 61.884 55.000 7.07 0.00 36.89 4.93
2297 2693 2.486636 TACGGTGGCAAGTGAGCGAG 62.487 60.000 7.07 0.00 36.89 5.03
2298 2694 2.743928 GGTGGCAAGTGAGCGAGG 60.744 66.667 0.00 0.00 34.64 4.63
2299 2695 2.343758 GTGGCAAGTGAGCGAGGA 59.656 61.111 0.00 0.00 34.64 3.71
2300 2696 1.078848 GTGGCAAGTGAGCGAGGAT 60.079 57.895 0.00 0.00 34.64 3.24
2301 2697 1.086634 GTGGCAAGTGAGCGAGGATC 61.087 60.000 0.00 0.00 34.64 3.36
2302 2698 1.219124 GGCAAGTGAGCGAGGATCA 59.781 57.895 0.00 0.00 34.64 2.92
2303 2699 0.809241 GGCAAGTGAGCGAGGATCAG 60.809 60.000 0.00 0.00 34.64 2.90
2304 2700 0.809241 GCAAGTGAGCGAGGATCAGG 60.809 60.000 0.00 0.00 33.17 3.86
2305 2701 0.179089 CAAGTGAGCGAGGATCAGGG 60.179 60.000 0.00 0.00 33.17 4.45
2306 2702 1.965754 AAGTGAGCGAGGATCAGGGC 61.966 60.000 0.00 0.00 33.17 5.19
2307 2703 3.531207 TGAGCGAGGATCAGGGCG 61.531 66.667 0.00 0.00 33.17 6.13
2308 2704 3.532155 GAGCGAGGATCAGGGCGT 61.532 66.667 0.00 0.00 33.17 5.68
2309 2705 3.492311 GAGCGAGGATCAGGGCGTC 62.492 68.421 0.00 0.00 33.17 5.19
2310 2706 4.933064 GCGAGGATCAGGGCGTCG 62.933 72.222 0.00 0.00 43.92 5.12
2311 2707 4.933064 CGAGGATCAGGGCGTCGC 62.933 72.222 9.22 9.22 36.94 5.19
2312 2708 3.838271 GAGGATCAGGGCGTCGCA 61.838 66.667 20.50 0.00 33.17 5.10
2313 2709 3.157217 GAGGATCAGGGCGTCGCAT 62.157 63.158 20.50 3.17 33.17 4.73
2314 2710 2.663188 GGATCAGGGCGTCGCATC 60.663 66.667 20.50 12.74 0.00 3.91
2315 2711 2.419198 GATCAGGGCGTCGCATCT 59.581 61.111 20.50 12.80 0.00 2.90
2316 2712 1.227380 GATCAGGGCGTCGCATCTT 60.227 57.895 20.50 1.77 0.00 2.40
2317 2713 0.811616 GATCAGGGCGTCGCATCTTT 60.812 55.000 20.50 5.75 0.00 2.52
2318 2714 1.091771 ATCAGGGCGTCGCATCTTTG 61.092 55.000 20.50 9.15 0.00 2.77
2319 2715 3.127533 AGGGCGTCGCATCTTTGC 61.128 61.111 20.50 0.00 45.78 3.68
2341 2737 2.507102 CGCTATATCGGCGCCCAG 60.507 66.667 23.46 8.15 45.83 4.45
2342 2738 2.970639 GCTATATCGGCGCCCAGA 59.029 61.111 23.46 14.41 0.00 3.86
2343 2739 1.517832 GCTATATCGGCGCCCAGAT 59.482 57.895 23.46 20.78 0.00 2.90
2344 2740 0.807667 GCTATATCGGCGCCCAGATG 60.808 60.000 23.46 6.36 0.00 2.90
2345 2741 0.532573 CTATATCGGCGCCCAGATGT 59.467 55.000 23.46 18.71 0.00 3.06
2346 2742 1.749063 CTATATCGGCGCCCAGATGTA 59.251 52.381 23.46 18.82 0.00 2.29
2347 2743 0.532573 ATATCGGCGCCCAGATGTAG 59.467 55.000 23.46 3.72 0.00 2.74
2348 2744 0.826256 TATCGGCGCCCAGATGTAGT 60.826 55.000 23.46 0.00 0.00 2.73
2349 2745 2.369257 ATCGGCGCCCAGATGTAGTG 62.369 60.000 23.46 1.99 0.00 2.74
2350 2746 2.203070 GGCGCCCAGATGTAGTGG 60.203 66.667 18.11 0.00 34.52 4.00
2351 2747 2.731571 GGCGCCCAGATGTAGTGGA 61.732 63.158 18.11 0.00 37.23 4.02
2352 2748 1.220749 GCGCCCAGATGTAGTGGAA 59.779 57.895 0.00 0.00 37.23 3.53
2353 2749 0.392461 GCGCCCAGATGTAGTGGAAA 60.392 55.000 0.00 0.00 37.23 3.13
2354 2750 1.948611 GCGCCCAGATGTAGTGGAAAA 60.949 52.381 0.00 0.00 37.23 2.29
2355 2751 2.643551 CGCCCAGATGTAGTGGAAAAT 58.356 47.619 0.00 0.00 37.23 1.82
2356 2752 2.355756 CGCCCAGATGTAGTGGAAAATG 59.644 50.000 0.00 0.00 37.23 2.32
2357 2753 3.620488 GCCCAGATGTAGTGGAAAATGA 58.380 45.455 0.00 0.00 37.23 2.57
2358 2754 3.629398 GCCCAGATGTAGTGGAAAATGAG 59.371 47.826 0.00 0.00 37.23 2.90
2359 2755 3.629398 CCCAGATGTAGTGGAAAATGAGC 59.371 47.826 0.00 0.00 37.23 4.26
2360 2756 4.264253 CCAGATGTAGTGGAAAATGAGCA 58.736 43.478 0.00 0.00 37.23 4.26
2361 2757 4.701651 CCAGATGTAGTGGAAAATGAGCAA 59.298 41.667 0.00 0.00 37.23 3.91
2362 2758 5.163683 CCAGATGTAGTGGAAAATGAGCAAG 60.164 44.000 0.00 0.00 37.23 4.01
2363 2759 4.946157 AGATGTAGTGGAAAATGAGCAAGG 59.054 41.667 0.00 0.00 0.00 3.61
2364 2760 3.420893 TGTAGTGGAAAATGAGCAAGGG 58.579 45.455 0.00 0.00 0.00 3.95
2365 2761 2.683211 AGTGGAAAATGAGCAAGGGT 57.317 45.000 0.00 0.00 0.00 4.34
2366 2762 2.519013 AGTGGAAAATGAGCAAGGGTC 58.481 47.619 0.00 0.00 0.00 4.46
2367 2763 2.108952 AGTGGAAAATGAGCAAGGGTCT 59.891 45.455 0.00 0.00 0.00 3.85
2368 2764 2.893489 GTGGAAAATGAGCAAGGGTCTT 59.107 45.455 0.00 0.00 0.00 3.01
2369 2765 3.321968 GTGGAAAATGAGCAAGGGTCTTT 59.678 43.478 0.00 0.00 0.00 2.52
2370 2766 3.321682 TGGAAAATGAGCAAGGGTCTTTG 59.678 43.478 0.00 0.00 30.12 2.77
2380 2776 3.905784 CAAGGGTCTTTGCATTTGACTC 58.094 45.455 11.99 9.23 0.00 3.36
2381 2777 2.154462 AGGGTCTTTGCATTTGACTCG 58.846 47.619 11.99 0.00 36.41 4.18
2382 2778 2.151202 GGGTCTTTGCATTTGACTCGA 58.849 47.619 11.99 0.00 0.00 4.04
2383 2779 2.095718 GGGTCTTTGCATTTGACTCGAC 60.096 50.000 11.99 0.00 0.00 4.20
2384 2780 2.411547 GGTCTTTGCATTTGACTCGACG 60.412 50.000 11.99 0.00 0.00 5.12
2385 2781 2.475111 GTCTTTGCATTTGACTCGACGA 59.525 45.455 0.00 0.00 0.00 4.20
2386 2782 2.731451 TCTTTGCATTTGACTCGACGAG 59.269 45.455 22.97 22.97 35.52 4.18
2387 2783 2.148916 TTGCATTTGACTCGACGAGT 57.851 45.000 29.59 29.59 46.42 4.18
2388 2784 3.291809 TTGCATTTGACTCGACGAGTA 57.708 42.857 29.28 15.49 43.53 2.59
2389 2785 2.592194 TGCATTTGACTCGACGAGTAC 58.408 47.619 29.28 21.45 43.53 2.73
2390 2786 1.578023 GCATTTGACTCGACGAGTACG 59.422 52.381 29.28 16.45 43.53 3.67
2391 2787 2.726989 GCATTTGACTCGACGAGTACGA 60.727 50.000 29.28 18.74 43.53 3.43
2392 2788 3.485633 CATTTGACTCGACGAGTACGAA 58.514 45.455 29.28 24.56 43.53 3.85
2393 2789 2.869358 TTGACTCGACGAGTACGAAG 57.131 50.000 29.28 3.38 43.53 3.79
2394 2790 1.073964 TGACTCGACGAGTACGAAGG 58.926 55.000 29.28 2.60 43.53 3.46
2395 2791 0.373024 GACTCGACGAGTACGAAGGG 59.627 60.000 29.28 1.83 43.53 3.95
2396 2792 1.023513 ACTCGACGAGTACGAAGGGG 61.024 60.000 28.28 0.04 41.51 4.79
2397 2793 0.742281 CTCGACGAGTACGAAGGGGA 60.742 60.000 16.83 0.00 42.66 4.81
2398 2794 0.321564 TCGACGAGTACGAAGGGGAA 60.322 55.000 0.00 0.00 42.66 3.97
2399 2795 0.098376 CGACGAGTACGAAGGGGAAG 59.902 60.000 0.00 0.00 42.66 3.46
2400 2796 0.455005 GACGAGTACGAAGGGGAAGG 59.545 60.000 0.00 0.00 42.66 3.46
2401 2797 0.038744 ACGAGTACGAAGGGGAAGGA 59.961 55.000 0.00 0.00 42.66 3.36
2402 2798 1.180029 CGAGTACGAAGGGGAAGGAA 58.820 55.000 0.00 0.00 42.66 3.36
2403 2799 1.134560 CGAGTACGAAGGGGAAGGAAG 59.865 57.143 0.00 0.00 42.66 3.46
2404 2800 0.903236 AGTACGAAGGGGAAGGAAGC 59.097 55.000 0.00 0.00 0.00 3.86
2405 2801 0.903236 GTACGAAGGGGAAGGAAGCT 59.097 55.000 0.00 0.00 0.00 3.74
2406 2802 2.105766 GTACGAAGGGGAAGGAAGCTA 58.894 52.381 0.00 0.00 0.00 3.32
2407 2803 1.196012 ACGAAGGGGAAGGAAGCTAG 58.804 55.000 0.00 0.00 0.00 3.42
2408 2804 0.179070 CGAAGGGGAAGGAAGCTAGC 60.179 60.000 6.62 6.62 0.00 3.42
2409 2805 0.181587 GAAGGGGAAGGAAGCTAGCC 59.818 60.000 12.13 0.00 0.00 3.93
2410 2806 1.627297 AAGGGGAAGGAAGCTAGCCG 61.627 60.000 12.13 0.00 0.00 5.52
2411 2807 2.064581 GGGGAAGGAAGCTAGCCGA 61.065 63.158 12.13 0.00 0.00 5.54
2412 2808 1.443828 GGGAAGGAAGCTAGCCGAG 59.556 63.158 12.13 0.00 0.00 4.63
2420 2816 3.361174 GCTAGCCGAGCCTAGGAG 58.639 66.667 14.75 2.36 46.41 3.69
2421 2817 2.272447 GCTAGCCGAGCCTAGGAGG 61.272 68.421 14.75 13.33 46.41 4.30
2422 2818 1.456726 CTAGCCGAGCCTAGGAGGA 59.543 63.158 14.75 0.00 37.67 3.71
2423 2819 0.039035 CTAGCCGAGCCTAGGAGGAT 59.961 60.000 14.75 13.41 37.67 3.24
2424 2820 0.483328 TAGCCGAGCCTAGGAGGATT 59.517 55.000 14.75 6.95 37.67 3.01
2425 2821 0.830023 AGCCGAGCCTAGGAGGATTC 60.830 60.000 14.75 0.37 37.67 2.52
2426 2822 1.960612 CCGAGCCTAGGAGGATTCG 59.039 63.158 14.75 12.26 40.99 3.34
2427 2823 1.287503 CGAGCCTAGGAGGATTCGC 59.712 63.158 14.75 0.00 37.67 4.70
2428 2824 1.175983 CGAGCCTAGGAGGATTCGCT 61.176 60.000 14.75 0.00 37.67 4.93
2429 2825 1.044611 GAGCCTAGGAGGATTCGCTT 58.955 55.000 14.75 0.00 37.67 4.68
2430 2826 2.240279 GAGCCTAGGAGGATTCGCTTA 58.760 52.381 14.75 0.00 37.67 3.09
2431 2827 2.230266 GAGCCTAGGAGGATTCGCTTAG 59.770 54.545 14.75 0.00 37.67 2.18
2432 2828 1.273886 GCCTAGGAGGATTCGCTTAGG 59.726 57.143 14.75 8.41 37.67 2.69
2433 2829 2.599677 CCTAGGAGGATTCGCTTAGGT 58.400 52.381 1.05 0.00 37.67 3.08
2434 2830 3.764218 CCTAGGAGGATTCGCTTAGGTA 58.236 50.000 1.05 0.00 37.67 3.08
2435 2831 3.759618 CCTAGGAGGATTCGCTTAGGTAG 59.240 52.174 1.05 0.00 37.67 3.18
2436 2832 1.964933 AGGAGGATTCGCTTAGGTAGC 59.035 52.381 0.00 0.00 46.83 3.58
2447 2843 3.996480 GCTTAGGTAGCTGGAACATAGG 58.004 50.000 4.27 0.00 46.77 2.57
2448 2844 3.244249 GCTTAGGTAGCTGGAACATAGGG 60.244 52.174 4.27 0.00 46.77 3.53
2449 2845 2.570386 AGGTAGCTGGAACATAGGGT 57.430 50.000 0.00 0.00 38.20 4.34
2450 2846 2.399580 AGGTAGCTGGAACATAGGGTC 58.600 52.381 0.00 0.00 38.20 4.46
2451 2847 2.022918 AGGTAGCTGGAACATAGGGTCT 60.023 50.000 0.00 0.00 38.20 3.85
2452 2848 2.772515 GGTAGCTGGAACATAGGGTCTT 59.227 50.000 0.00 0.00 38.20 3.01
2453 2849 3.200165 GGTAGCTGGAACATAGGGTCTTT 59.800 47.826 0.00 0.00 38.20 2.52
2454 2850 3.356529 AGCTGGAACATAGGGTCTTTG 57.643 47.619 0.00 0.00 38.20 2.77
2455 2851 2.912956 AGCTGGAACATAGGGTCTTTGA 59.087 45.455 0.00 0.00 38.20 2.69
2456 2852 3.010420 GCTGGAACATAGGGTCTTTGAC 58.990 50.000 0.00 0.00 38.20 3.18
2457 2853 3.559171 GCTGGAACATAGGGTCTTTGACA 60.559 47.826 0.00 0.00 38.20 3.58
2458 2854 4.256920 CTGGAACATAGGGTCTTTGACAG 58.743 47.826 0.00 0.00 38.20 3.51
2459 2855 3.907474 TGGAACATAGGGTCTTTGACAGA 59.093 43.478 0.00 0.00 33.68 3.41
2460 2856 4.020218 TGGAACATAGGGTCTTTGACAGAG 60.020 45.833 0.00 0.00 33.68 3.35
2461 2857 4.223032 GGAACATAGGGTCTTTGACAGAGA 59.777 45.833 0.00 0.00 33.68 3.10
2462 2858 5.280011 GGAACATAGGGTCTTTGACAGAGAA 60.280 44.000 0.00 0.00 33.68 2.87
2463 2859 5.413309 ACATAGGGTCTTTGACAGAGAAG 57.587 43.478 0.00 0.00 33.68 2.85
2464 2860 2.849294 AGGGTCTTTGACAGAGAAGC 57.151 50.000 0.00 0.00 33.68 3.86
2465 2861 2.334023 AGGGTCTTTGACAGAGAAGCT 58.666 47.619 0.00 0.00 33.68 3.74
2466 2862 2.708325 AGGGTCTTTGACAGAGAAGCTT 59.292 45.455 0.00 0.00 33.68 3.74
2467 2863 3.070748 GGGTCTTTGACAGAGAAGCTTC 58.929 50.000 19.11 19.11 33.68 3.86
2468 2864 2.734079 GGTCTTTGACAGAGAAGCTTCG 59.266 50.000 20.43 9.39 33.68 3.79
2469 2865 2.734079 GTCTTTGACAGAGAAGCTTCGG 59.266 50.000 20.43 15.88 32.09 4.30
2470 2866 2.072298 CTTTGACAGAGAAGCTTCGGG 58.928 52.381 20.43 15.54 0.00 5.14
2471 2867 1.338107 TTGACAGAGAAGCTTCGGGA 58.662 50.000 20.43 3.79 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.374190 GCGATGGAGCCATGGAGAT 59.626 57.895 18.40 0.00 36.70 2.75
26 27 4.816984 GAGGGGAGAGGACGGCGA 62.817 72.222 16.62 0.00 0.00 5.54
28 29 4.779733 TGGAGGGGAGAGGACGGC 62.780 72.222 0.00 0.00 0.00 5.68
30 31 2.196925 CGATGGAGGGGAGAGGACG 61.197 68.421 0.00 0.00 0.00 4.79
32 33 1.075970 CACGATGGAGGGGAGAGGA 60.076 63.158 0.00 0.00 0.00 3.71
37 38 2.039418 CTATGAACACGATGGAGGGGA 58.961 52.381 0.00 0.00 0.00 4.81
40 41 2.546795 GGCTCTATGAACACGATGGAGG 60.547 54.545 0.00 0.00 30.99 4.30
42 43 1.412710 GGGCTCTATGAACACGATGGA 59.587 52.381 0.00 0.00 0.00 3.41
43 44 1.138859 TGGGCTCTATGAACACGATGG 59.861 52.381 0.00 0.00 0.00 3.51
45 46 2.158900 CCTTGGGCTCTATGAACACGAT 60.159 50.000 0.00 0.00 0.00 3.73
46 47 1.207089 CCTTGGGCTCTATGAACACGA 59.793 52.381 0.00 0.00 0.00 4.35
48 49 2.789409 ACCTTGGGCTCTATGAACAC 57.211 50.000 0.00 0.00 0.00 3.32
49 50 2.771943 CCTACCTTGGGCTCTATGAACA 59.228 50.000 0.00 0.00 0.00 3.18
50 51 2.772515 ACCTACCTTGGGCTCTATGAAC 59.227 50.000 0.00 0.00 0.00 3.18
53 54 1.202698 GCACCTACCTTGGGCTCTATG 60.203 57.143 0.00 0.00 0.00 2.23
54 55 1.132500 GCACCTACCTTGGGCTCTAT 58.868 55.000 0.00 0.00 0.00 1.98
64 69 0.617820 ACCATCGGAAGCACCTACCT 60.618 55.000 0.00 0.00 36.31 3.08
67 72 1.568504 AAGACCATCGGAAGCACCTA 58.431 50.000 0.00 0.00 36.31 3.08
71 76 3.343617 CCTAAAAAGACCATCGGAAGCA 58.656 45.455 0.00 0.00 0.00 3.91
72 77 2.683362 CCCTAAAAAGACCATCGGAAGC 59.317 50.000 0.00 0.00 0.00 3.86
77 82 1.743394 GCCACCCTAAAAAGACCATCG 59.257 52.381 0.00 0.00 0.00 3.84
80 85 0.891904 GCGCCACCCTAAAAAGACCA 60.892 55.000 0.00 0.00 0.00 4.02
81 86 1.880894 GCGCCACCCTAAAAAGACC 59.119 57.895 0.00 0.00 0.00 3.85
84 89 0.109919 GTTCGCGCCACCCTAAAAAG 60.110 55.000 0.00 0.00 0.00 2.27
89 94 4.124351 CGAGTTCGCGCCACCCTA 62.124 66.667 0.00 0.00 0.00 3.53
99 104 1.999071 CTCCTGAGGAGGCGAGTTCG 61.999 65.000 20.90 0.00 45.43 3.95
117 122 1.994463 GGATTGTCCTGCACCTCCT 59.006 57.895 0.00 0.00 32.53 3.69
127 132 3.065371 CGCCTTTCAATGTAGGATTGTCC 59.935 47.826 8.03 0.00 36.58 4.02
145 150 2.283529 ATCTCAACCACCGTCGCCT 61.284 57.895 0.00 0.00 0.00 5.52
146 151 2.100631 CATCTCAACCACCGTCGCC 61.101 63.158 0.00 0.00 0.00 5.54
147 152 1.078759 CTCATCTCAACCACCGTCGC 61.079 60.000 0.00 0.00 0.00 5.19
152 157 3.012518 CCACAATCTCATCTCAACCACC 58.987 50.000 0.00 0.00 0.00 4.61
157 162 6.612863 TCCTCTTATCCACAATCTCATCTCAA 59.387 38.462 0.00 0.00 0.00 3.02
158 163 6.138967 TCCTCTTATCCACAATCTCATCTCA 58.861 40.000 0.00 0.00 0.00 3.27
162 167 7.002879 CCAAATCCTCTTATCCACAATCTCAT 58.997 38.462 0.00 0.00 0.00 2.90
165 170 5.399497 CCCCAAATCCTCTTATCCACAATCT 60.399 44.000 0.00 0.00 0.00 2.40
175 180 2.127708 GGCTCTCCCCAAATCCTCTTA 58.872 52.381 0.00 0.00 0.00 2.10
182 187 0.253347 TCCTCAGGCTCTCCCCAAAT 60.253 55.000 0.00 0.00 0.00 2.32
213 218 0.982852 ATCTTGTGGGCTCCGATGGA 60.983 55.000 0.00 0.00 0.00 3.41
216 221 1.528824 CCATCTTGTGGGCTCCGAT 59.471 57.895 0.00 0.00 44.79 4.18
241 246 2.291670 ACACCACCCCAAAAACACTGTA 60.292 45.455 0.00 0.00 0.00 2.74
244 249 1.190643 CACACCACCCCAAAAACACT 58.809 50.000 0.00 0.00 0.00 3.55
252 257 1.836391 CAGAGTTCACACCACCCCA 59.164 57.895 0.00 0.00 0.00 4.96
253 258 1.600916 GCAGAGTTCACACCACCCC 60.601 63.158 0.00 0.00 0.00 4.95
269 274 1.229400 ACCGACCCCTAAGGAAGCA 60.229 57.895 0.00 0.00 39.89 3.91
270 275 1.221021 CACCGACCCCTAAGGAAGC 59.779 63.158 0.00 0.00 39.89 3.86
272 277 1.536907 TGCACCGACCCCTAAGGAA 60.537 57.895 0.00 0.00 39.89 3.36
289 294 8.359821 CCACCATCTAGTGTAGGAATGTCCTG 62.360 50.000 7.07 0.00 39.79 3.86
321 326 0.392998 CCTCAACAACCCCATCTCGG 60.393 60.000 0.00 0.00 0.00 4.63
322 327 0.613260 TCCTCAACAACCCCATCTCG 59.387 55.000 0.00 0.00 0.00 4.04
351 356 2.273776 GCCTCCTCAAGCCCTTCC 59.726 66.667 0.00 0.00 0.00 3.46
353 358 1.846712 GACTGCCTCCTCAAGCCCTT 61.847 60.000 0.00 0.00 0.00 3.95
359 364 2.237143 CCATTGTAGACTGCCTCCTCAA 59.763 50.000 0.00 0.00 0.00 3.02
371 376 2.250008 TCTCCCAGGATCCCATTGTAGA 59.750 50.000 8.55 3.22 0.00 2.59
383 388 0.410663 TTTCCTACCGTCTCCCAGGA 59.589 55.000 0.00 0.00 35.38 3.86
387 392 1.066358 CCACTTTTCCTACCGTCTCCC 60.066 57.143 0.00 0.00 0.00 4.30
396 401 3.899360 TCTTCTTCGGTCCACTTTTCCTA 59.101 43.478 0.00 0.00 0.00 2.94
400 405 3.553828 TGTCTTCTTCGGTCCACTTTT 57.446 42.857 0.00 0.00 0.00 2.27
404 411 1.797025 CCTTGTCTTCTTCGGTCCAC 58.203 55.000 0.00 0.00 0.00 4.02
409 416 1.630244 CGCAGCCTTGTCTTCTTCGG 61.630 60.000 0.00 0.00 0.00 4.30
410 417 1.630244 CCGCAGCCTTGTCTTCTTCG 61.630 60.000 0.00 0.00 0.00 3.79
418 425 2.032681 GTTCCTCCGCAGCCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
428 435 3.782443 ATCCACCCGCGTTCCTCC 61.782 66.667 4.92 0.00 0.00 4.30
435 442 0.378257 CAAATTCTCATCCACCCGCG 59.622 55.000 0.00 0.00 0.00 6.46
439 446 2.420022 CACCGTCAAATTCTCATCCACC 59.580 50.000 0.00 0.00 0.00 4.61
441 448 2.039746 ACCACCGTCAAATTCTCATCCA 59.960 45.455 0.00 0.00 0.00 3.41
442 449 2.678336 GACCACCGTCAAATTCTCATCC 59.322 50.000 0.00 0.00 38.99 3.51
481 488 1.548081 CAACCACAATGGATGAGGCA 58.452 50.000 0.84 0.00 42.23 4.75
487 494 0.251121 TCCACGCAACCACAATGGAT 60.251 50.000 0.84 0.00 40.96 3.41
488 495 0.466372 TTCCACGCAACCACAATGGA 60.466 50.000 0.84 0.00 40.96 3.41
501 508 0.174845 TTATCCCGCTCACTTCCACG 59.825 55.000 0.00 0.00 0.00 4.94
503 510 0.178068 GCTTATCCCGCTCACTTCCA 59.822 55.000 0.00 0.00 0.00 3.53
506 513 0.179000 CCAGCTTATCCCGCTCACTT 59.821 55.000 0.00 0.00 35.07 3.16
513 520 2.280186 GCGGACCAGCTTATCCCG 60.280 66.667 7.33 8.04 42.74 5.14
562 569 1.799548 GCGGGTTGCGTTTTCTCAAAA 60.800 47.619 0.00 0.00 0.00 2.44
563 570 0.248702 GCGGGTTGCGTTTTCTCAAA 60.249 50.000 0.00 0.00 0.00 2.69
564 571 1.357334 GCGGGTTGCGTTTTCTCAA 59.643 52.632 0.00 0.00 0.00 3.02
565 572 3.027292 GCGGGTTGCGTTTTCTCA 58.973 55.556 0.00 0.00 0.00 3.27
581 588 3.554524 GTGATTGTGTGTGTACATGTGC 58.445 45.455 9.11 8.01 39.39 4.57
586 596 1.771854 AGGGGTGATTGTGTGTGTACA 59.228 47.619 0.00 0.00 0.00 2.90
587 597 2.561478 AGGGGTGATTGTGTGTGTAC 57.439 50.000 0.00 0.00 0.00 2.90
598 608 1.207329 GCTTCTGTTCGTAGGGGTGAT 59.793 52.381 0.00 0.00 0.00 3.06
602 612 0.736325 CGTGCTTCTGTTCGTAGGGG 60.736 60.000 0.00 0.00 0.00 4.79
612 622 4.919677 AAAAACAAAAACCGTGCTTCTG 57.080 36.364 0.00 0.00 0.00 3.02
660 670 3.444281 GCCAAGTGCTAGTCACCTTGAC 61.444 54.545 18.88 0.00 46.81 3.18
661 671 1.270839 GCCAAGTGCTAGTCACCTTGA 60.271 52.381 18.88 0.00 46.81 3.02
690 717 2.184020 CTGACCGGCCCATGAGACAA 62.184 60.000 0.00 0.00 0.00 3.18
697 724 1.153168 CGATTTCTGACCGGCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
699 726 2.513897 CCGATTTCTGACCGGCCC 60.514 66.667 0.00 0.00 36.62 5.80
714 741 3.242897 TTTGGGTACTCACGGCCCG 62.243 63.158 0.00 0.00 45.19 6.13
724 751 6.930731 TGATCAATTTTTAGCCTTTGGGTAC 58.069 36.000 0.00 0.00 35.26 3.34
725 752 7.732222 ATGATCAATTTTTAGCCTTTGGGTA 57.268 32.000 0.00 0.00 34.28 3.69
794 878 2.507058 TGACCATCTTCTCAGGAATGGG 59.493 50.000 5.33 0.00 36.46 4.00
898 986 9.137459 GCTGCTGTTTATATAGAGGGAGATATA 57.863 37.037 0.00 0.00 0.00 0.86
967 1056 4.876107 TGTCTTCTTCTTTCGCTTGTTCTT 59.124 37.500 0.00 0.00 0.00 2.52
968 1057 4.271291 GTGTCTTCTTCTTTCGCTTGTTCT 59.729 41.667 0.00 0.00 0.00 3.01
993 1126 1.227764 CATAGCTGCCATGACCGCT 60.228 57.895 1.61 3.12 36.56 5.52
1016 1149 1.066143 ACATGATCCTCGTGTTGGTCC 60.066 52.381 0.00 0.00 43.56 4.46
1085 1218 4.761975 TGAGGACTTTGACTAACGTTGTT 58.238 39.130 11.99 0.00 0.00 2.83
1183 1316 2.616842 CAACGTTAGCTTTCAGGTTGGT 59.383 45.455 0.00 0.00 35.88 3.67
1200 1333 5.164061 GCATGTAGGAAAAATTGCTTCAACG 60.164 40.000 0.00 0.00 32.72 4.10
1318 1451 3.177884 TGTCCTTGGCAGGTGGCT 61.178 61.111 5.03 0.00 44.01 4.75
1338 1471 1.073025 TTGTCGGCAGGCACATTCT 59.927 52.632 0.00 0.00 0.00 2.40
1414 1547 1.038130 CATCCGAGGTCCGAAGAGGT 61.038 60.000 0.00 0.00 41.76 3.85
1510 1643 2.369532 ACCAAAACGGGTAGTAGCTCAA 59.630 45.455 0.00 0.00 40.07 3.02
1514 1647 2.995939 GTGTACCAAAACGGGTAGTAGC 59.004 50.000 0.00 0.00 43.83 3.58
1547 1691 2.951642 AGACACTGTCACCACCAAAATG 59.048 45.455 11.80 0.00 34.60 2.32
1571 1715 6.003326 TCTTCTCATATGATTCTCTCTCGCT 58.997 40.000 5.72 0.00 0.00 4.93
1607 1996 6.500684 ACATGACCACAATAGTTTAAGCAG 57.499 37.500 0.00 0.00 0.00 4.24
1616 2005 7.305935 CGTTCAAACAAAACATGACCACAATAG 60.306 37.037 0.00 0.00 0.00 1.73
1627 2016 4.398044 AGACCACTCGTTCAAACAAAACAT 59.602 37.500 0.00 0.00 0.00 2.71
1635 2024 5.272283 AGTTTCTAGACCACTCGTTCAAA 57.728 39.130 0.00 0.00 0.00 2.69
1668 2057 6.687958 CAGCGCAAAACATGAAAGAAAATTTT 59.312 30.769 11.47 2.28 0.00 1.82
1732 2122 8.570488 CATTTCCATGAAAGATTCGATATTCCA 58.430 33.333 0.00 0.00 34.92 3.53
1742 2132 9.093458 ACCTTTAGAACATTTCCATGAAAGATT 57.907 29.630 0.00 0.00 34.92 2.40
1907 2299 7.582435 TTTTGCAAGAACGTAAAACATTTGA 57.418 28.000 0.00 0.00 0.00 2.69
1954 2346 4.943373 TTTTTGGTGAGAGCCCCC 57.057 55.556 0.00 0.00 0.00 5.40
1983 2375 7.224557 ACTGGTCAATATTTTGTGCACTTTTTC 59.775 33.333 19.41 0.00 34.32 2.29
2041 2437 3.646162 TGTTGAGACAACATAGGTGGAGT 59.354 43.478 12.32 0.00 31.49 3.85
2042 2438 4.271696 TGTTGAGACAACATAGGTGGAG 57.728 45.455 12.32 0.00 31.49 3.86
2043 2439 4.908601 ATGTTGAGACAACATAGGTGGA 57.091 40.909 22.78 0.24 38.94 4.02
2049 2445 3.196901 ACCGGCTATGTTGAGACAACATA 59.803 43.478 25.32 25.32 40.87 2.29
2050 2446 2.027192 ACCGGCTATGTTGAGACAACAT 60.027 45.455 25.70 25.70 42.82 2.71
2051 2447 1.346395 ACCGGCTATGTTGAGACAACA 59.654 47.619 17.39 17.39 39.66 3.33
2052 2448 2.000447 GACCGGCTATGTTGAGACAAC 59.000 52.381 0.00 7.55 39.66 3.32
2053 2449 1.066430 GGACCGGCTATGTTGAGACAA 60.066 52.381 0.00 0.00 39.66 3.18
2054 2450 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41
2055 2451 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
2056 2452 0.616395 TGGGACCGGCTATGTTGAGA 60.616 55.000 0.00 0.00 0.00 3.27
2057 2453 0.251916 TTGGGACCGGCTATGTTGAG 59.748 55.000 0.00 0.00 0.00 3.02
2058 2454 0.251916 CTTGGGACCGGCTATGTTGA 59.748 55.000 0.00 0.00 0.00 3.18
2059 2455 1.376609 GCTTGGGACCGGCTATGTTG 61.377 60.000 0.00 0.00 0.00 3.33
2060 2456 1.077716 GCTTGGGACCGGCTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
2061 2457 2.590092 GCTTGGGACCGGCTATGT 59.410 61.111 0.00 0.00 0.00 2.29
2062 2458 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
2063 2459 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
2073 2469 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
2074 2470 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
2075 2471 0.623617 ATCCTCCTTTACCCGGGCTT 60.624 55.000 24.08 4.08 0.00 4.35
2076 2472 1.004361 ATCCTCCTTTACCCGGGCT 59.996 57.895 24.08 10.93 0.00 5.19
2077 2473 1.148498 CATCCTCCTTTACCCGGGC 59.852 63.158 24.08 0.00 0.00 6.13
2078 2474 0.986550 ACCATCCTCCTTTACCCGGG 60.987 60.000 22.25 22.25 0.00 5.73
2079 2475 0.916809 AACCATCCTCCTTTACCCGG 59.083 55.000 0.00 0.00 0.00 5.73
2080 2476 1.280998 ACAACCATCCTCCTTTACCCG 59.719 52.381 0.00 0.00 0.00 5.28
2081 2477 2.307686 TCACAACCATCCTCCTTTACCC 59.692 50.000 0.00 0.00 0.00 3.69
2082 2478 3.713826 TCACAACCATCCTCCTTTACC 57.286 47.619 0.00 0.00 0.00 2.85
2083 2479 5.368989 CCTATCACAACCATCCTCCTTTAC 58.631 45.833 0.00 0.00 0.00 2.01
2084 2480 4.141482 GCCTATCACAACCATCCTCCTTTA 60.141 45.833 0.00 0.00 0.00 1.85
2085 2481 3.372025 GCCTATCACAACCATCCTCCTTT 60.372 47.826 0.00 0.00 0.00 3.11
2086 2482 2.173569 GCCTATCACAACCATCCTCCTT 59.826 50.000 0.00 0.00 0.00 3.36
2087 2483 1.771255 GCCTATCACAACCATCCTCCT 59.229 52.381 0.00 0.00 0.00 3.69
2088 2484 1.771255 AGCCTATCACAACCATCCTCC 59.229 52.381 0.00 0.00 0.00 4.30
2089 2485 3.209410 CAAGCCTATCACAACCATCCTC 58.791 50.000 0.00 0.00 0.00 3.71
2090 2486 2.092212 CCAAGCCTATCACAACCATCCT 60.092 50.000 0.00 0.00 0.00 3.24
2091 2487 2.301346 CCAAGCCTATCACAACCATCC 58.699 52.381 0.00 0.00 0.00 3.51
2092 2488 1.678101 GCCAAGCCTATCACAACCATC 59.322 52.381 0.00 0.00 0.00 3.51
2093 2489 1.767759 GCCAAGCCTATCACAACCAT 58.232 50.000 0.00 0.00 0.00 3.55
2094 2490 0.676466 CGCCAAGCCTATCACAACCA 60.676 55.000 0.00 0.00 0.00 3.67
2095 2491 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2096 2492 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2097 2493 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2098 2494 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2099 2495 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2107 2503 1.286354 TTTTACGTCGGCTCGCCAAG 61.286 55.000 8.87 1.03 35.37 3.61
2108 2504 0.879400 TTTTTACGTCGGCTCGCCAA 60.879 50.000 8.87 0.00 35.37 4.52
2109 2505 1.300775 TTTTTACGTCGGCTCGCCA 60.301 52.632 8.87 0.00 35.37 5.69
2110 2506 1.131218 GTTTTTACGTCGGCTCGCC 59.869 57.895 0.00 0.00 0.00 5.54
2111 2507 0.092519 GAGTTTTTACGTCGGCTCGC 59.907 55.000 0.00 0.00 0.00 5.03
2112 2508 1.385743 CTGAGTTTTTACGTCGGCTCG 59.614 52.381 0.00 0.00 0.00 5.03
2113 2509 1.126296 GCTGAGTTTTTACGTCGGCTC 59.874 52.381 0.00 0.00 39.17 4.70
2114 2510 1.145803 GCTGAGTTTTTACGTCGGCT 58.854 50.000 0.00 0.00 39.17 5.52
2115 2511 0.165295 GGCTGAGTTTTTACGTCGGC 59.835 55.000 0.00 0.00 41.15 5.54
2116 2512 1.193874 GTGGCTGAGTTTTTACGTCGG 59.806 52.381 0.00 0.00 0.00 4.79
2117 2513 2.132762 AGTGGCTGAGTTTTTACGTCG 58.867 47.619 0.00 0.00 0.00 5.12
2118 2514 3.391049 AGAGTGGCTGAGTTTTTACGTC 58.609 45.455 0.00 0.00 0.00 4.34
2119 2515 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
2120 2516 5.163854 CCATAAGAGTGGCTGAGTTTTTACG 60.164 44.000 0.00 0.00 31.43 3.18
2121 2517 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
2122 2518 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
2123 2519 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
2124 2520 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
2125 2521 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
2126 2522 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
2127 2523 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
2128 2524 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
2129 2525 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
2130 2526 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
2131 2527 5.455899 GGATTTCATCTCCATAAGAGTGGCT 60.456 44.000 0.00 0.00 43.71 4.75
2132 2528 4.759183 GGATTTCATCTCCATAAGAGTGGC 59.241 45.833 0.00 0.00 43.71 5.01
2133 2529 5.933617 TGGATTTCATCTCCATAAGAGTGG 58.066 41.667 0.00 0.00 43.71 4.00
2134 2530 7.870509 TTTGGATTTCATCTCCATAAGAGTG 57.129 36.000 0.00 0.00 42.26 3.51
2135 2531 8.331740 TCTTTTGGATTTCATCTCCATAAGAGT 58.668 33.333 16.32 0.00 46.65 3.24
2136 2532 8.743085 TCTTTTGGATTTCATCTCCATAAGAG 57.257 34.615 16.32 4.34 46.65 2.85
2151 2547 4.802583 GCCCCAACGAAAATCTTTTGGATT 60.803 41.667 4.70 0.00 45.61 3.01
2152 2548 3.306710 GCCCCAACGAAAATCTTTTGGAT 60.307 43.478 4.70 0.00 40.97 3.41
2153 2549 2.036604 GCCCCAACGAAAATCTTTTGGA 59.963 45.455 4.70 0.00 40.97 3.53
2154 2550 2.412870 GCCCCAACGAAAATCTTTTGG 58.587 47.619 0.00 0.00 38.62 3.28
2155 2551 2.058057 CGCCCCAACGAAAATCTTTTG 58.942 47.619 0.00 0.00 34.06 2.44
2156 2552 1.684450 ACGCCCCAACGAAAATCTTTT 59.316 42.857 0.00 0.00 36.70 2.27
2157 2553 1.324383 ACGCCCCAACGAAAATCTTT 58.676 45.000 0.00 0.00 36.70 2.52
2158 2554 2.188062 TACGCCCCAACGAAAATCTT 57.812 45.000 0.00 0.00 36.70 2.40
2159 2555 1.808343 GTTACGCCCCAACGAAAATCT 59.192 47.619 0.00 0.00 36.70 2.40
2160 2556 1.135603 GGTTACGCCCCAACGAAAATC 60.136 52.381 0.00 0.00 36.70 2.17
2161 2557 0.883153 GGTTACGCCCCAACGAAAAT 59.117 50.000 0.00 0.00 36.70 1.82
2162 2558 2.329244 GGTTACGCCCCAACGAAAA 58.671 52.632 0.00 0.00 36.70 2.29
2163 2559 4.061949 GGTTACGCCCCAACGAAA 57.938 55.556 0.00 0.00 36.70 3.46
2172 2568 0.735287 GTCGTTGAGAGGGTTACGCC 60.735 60.000 0.00 0.00 34.24 5.68
2173 2569 1.069378 CGTCGTTGAGAGGGTTACGC 61.069 60.000 0.00 0.00 34.24 4.42
2174 2570 1.069378 GCGTCGTTGAGAGGGTTACG 61.069 60.000 0.00 0.00 35.42 3.18
2175 2571 1.069378 CGCGTCGTTGAGAGGGTTAC 61.069 60.000 0.00 0.00 35.42 2.50
2176 2572 1.210931 CGCGTCGTTGAGAGGGTTA 59.789 57.895 0.00 0.00 35.42 2.85
2177 2573 2.049433 CGCGTCGTTGAGAGGGTT 60.049 61.111 0.00 0.00 35.42 4.11
2178 2574 4.719369 GCGCGTCGTTGAGAGGGT 62.719 66.667 8.43 0.00 35.42 4.34
2180 2576 4.717629 TGGCGCGTCGTTGAGAGG 62.718 66.667 6.09 0.00 37.76 3.69
2181 2577 3.470567 GTGGCGCGTCGTTGAGAG 61.471 66.667 6.09 0.00 0.00 3.20
2182 2578 3.567478 ATGTGGCGCGTCGTTGAGA 62.567 57.895 6.09 0.00 0.00 3.27
2183 2579 3.071459 GATGTGGCGCGTCGTTGAG 62.071 63.158 6.09 0.00 0.00 3.02
2184 2580 3.109547 GATGTGGCGCGTCGTTGA 61.110 61.111 6.09 0.00 0.00 3.18
2189 2585 3.849953 GTTCCGATGTGGCGCGTC 61.850 66.667 2.29 2.29 37.80 5.19
2202 2598 2.627839 TTTCACCACACCCGGGTTCC 62.628 60.000 27.83 0.00 36.19 3.62
2203 2599 0.752376 TTTTCACCACACCCGGGTTC 60.752 55.000 27.83 0.00 36.19 3.62
2204 2600 0.324460 TTTTTCACCACACCCGGGTT 60.324 50.000 27.83 13.37 36.19 4.11
2205 2601 0.105913 ATTTTTCACCACACCCGGGT 60.106 50.000 24.16 24.16 39.88 5.28
2206 2602 0.316841 CATTTTTCACCACACCCGGG 59.683 55.000 22.25 22.25 0.00 5.73
2207 2603 0.316841 CCATTTTTCACCACACCCGG 59.683 55.000 0.00 0.00 0.00 5.73
2208 2604 0.316841 CCCATTTTTCACCACACCCG 59.683 55.000 0.00 0.00 0.00 5.28
2209 2605 0.034756 GCCCATTTTTCACCACACCC 59.965 55.000 0.00 0.00 0.00 4.61
2210 2606 0.755686 TGCCCATTTTTCACCACACC 59.244 50.000 0.00 0.00 0.00 4.16
2211 2607 2.482864 CTTGCCCATTTTTCACCACAC 58.517 47.619 0.00 0.00 0.00 3.82
2212 2608 1.415659 CCTTGCCCATTTTTCACCACA 59.584 47.619 0.00 0.00 0.00 4.17
2213 2609 1.270785 CCCTTGCCCATTTTTCACCAC 60.271 52.381 0.00 0.00 0.00 4.16
2214 2610 1.055040 CCCTTGCCCATTTTTCACCA 58.945 50.000 0.00 0.00 0.00 4.17
2215 2611 0.321564 GCCCTTGCCCATTTTTCACC 60.322 55.000 0.00 0.00 0.00 4.02
2216 2612 3.231734 GCCCTTGCCCATTTTTCAC 57.768 52.632 0.00 0.00 0.00 3.18
2255 2651 1.160137 GGATCAAGATATGGCGCACC 58.840 55.000 10.83 0.00 0.00 5.01
2256 2652 0.792640 CGGATCAAGATATGGCGCAC 59.207 55.000 10.83 0.00 0.00 5.34
2257 2653 0.320683 CCGGATCAAGATATGGCGCA 60.321 55.000 10.83 0.00 0.00 6.09
2258 2654 0.037326 TCCGGATCAAGATATGGCGC 60.037 55.000 0.00 0.00 0.00 6.53
2259 2655 2.680312 ATCCGGATCAAGATATGGCG 57.320 50.000 12.38 0.00 0.00 5.69
2260 2656 3.448686 CGTATCCGGATCAAGATATGGC 58.551 50.000 23.08 0.00 31.21 4.40
2274 2670 0.806102 CTCACTTGCCACCGTATCCG 60.806 60.000 0.00 0.00 0.00 4.18
2275 2671 1.090052 GCTCACTTGCCACCGTATCC 61.090 60.000 0.00 0.00 0.00 2.59
2276 2672 1.421410 CGCTCACTTGCCACCGTATC 61.421 60.000 0.00 0.00 0.00 2.24
2277 2673 1.447838 CGCTCACTTGCCACCGTAT 60.448 57.895 0.00 0.00 0.00 3.06
2278 2674 2.048597 CGCTCACTTGCCACCGTA 60.049 61.111 0.00 0.00 0.00 4.02
2279 2675 3.865929 CTCGCTCACTTGCCACCGT 62.866 63.158 0.00 0.00 0.00 4.83
2280 2676 3.114616 CTCGCTCACTTGCCACCG 61.115 66.667 0.00 0.00 0.00 4.94
2281 2677 2.527951 ATCCTCGCTCACTTGCCACC 62.528 60.000 0.00 0.00 0.00 4.61
2282 2678 1.078848 ATCCTCGCTCACTTGCCAC 60.079 57.895 0.00 0.00 0.00 5.01
2283 2679 1.219124 GATCCTCGCTCACTTGCCA 59.781 57.895 0.00 0.00 0.00 4.92
2284 2680 0.809241 CTGATCCTCGCTCACTTGCC 60.809 60.000 0.00 0.00 0.00 4.52
2285 2681 0.809241 CCTGATCCTCGCTCACTTGC 60.809 60.000 0.00 0.00 0.00 4.01
2286 2682 0.179089 CCCTGATCCTCGCTCACTTG 60.179 60.000 0.00 0.00 0.00 3.16
2287 2683 1.965754 GCCCTGATCCTCGCTCACTT 61.966 60.000 0.00 0.00 0.00 3.16
2288 2684 2.430610 GCCCTGATCCTCGCTCACT 61.431 63.158 0.00 0.00 0.00 3.41
2289 2685 2.107953 GCCCTGATCCTCGCTCAC 59.892 66.667 0.00 0.00 0.00 3.51
2290 2686 3.531207 CGCCCTGATCCTCGCTCA 61.531 66.667 0.00 0.00 0.00 4.26
2291 2687 3.492311 GACGCCCTGATCCTCGCTC 62.492 68.421 0.00 0.00 0.00 5.03
2292 2688 3.532155 GACGCCCTGATCCTCGCT 61.532 66.667 0.00 0.00 0.00 4.93
2293 2689 4.933064 CGACGCCCTGATCCTCGC 62.933 72.222 0.00 0.00 0.00 5.03
2294 2690 4.933064 GCGACGCCCTGATCCTCG 62.933 72.222 9.14 0.00 0.00 4.63
2295 2691 3.157217 ATGCGACGCCCTGATCCTC 62.157 63.158 18.69 0.00 0.00 3.71
2296 2692 3.157217 GATGCGACGCCCTGATCCT 62.157 63.158 18.69 0.00 0.00 3.24
2297 2693 2.650813 AAGATGCGACGCCCTGATCC 62.651 60.000 18.69 0.00 0.00 3.36
2298 2694 0.811616 AAAGATGCGACGCCCTGATC 60.812 55.000 18.69 13.26 0.00 2.92
2299 2695 1.091771 CAAAGATGCGACGCCCTGAT 61.092 55.000 18.69 3.36 0.00 2.90
2300 2696 1.741401 CAAAGATGCGACGCCCTGA 60.741 57.895 18.69 0.00 0.00 3.86
2301 2697 2.787249 CAAAGATGCGACGCCCTG 59.213 61.111 18.69 3.45 0.00 4.45
2302 2698 3.127533 GCAAAGATGCGACGCCCT 61.128 61.111 18.69 11.66 43.83 5.19
2325 2721 0.807667 CATCTGGGCGCCGATATAGC 60.808 60.000 22.54 4.79 0.00 2.97
2326 2722 0.532573 ACATCTGGGCGCCGATATAG 59.467 55.000 22.54 13.16 0.00 1.31
2327 2723 1.749063 CTACATCTGGGCGCCGATATA 59.251 52.381 22.54 11.13 0.00 0.86
2328 2724 0.532573 CTACATCTGGGCGCCGATAT 59.467 55.000 22.54 12.45 0.00 1.63
2329 2725 0.826256 ACTACATCTGGGCGCCGATA 60.826 55.000 22.54 10.19 0.00 2.92
2330 2726 2.134287 ACTACATCTGGGCGCCGAT 61.134 57.895 22.54 15.94 0.00 4.18
2331 2727 2.758327 ACTACATCTGGGCGCCGA 60.758 61.111 22.54 17.25 0.00 5.54
2332 2728 2.586079 CACTACATCTGGGCGCCG 60.586 66.667 22.54 7.85 0.00 6.46
2333 2729 2.203070 CCACTACATCTGGGCGCC 60.203 66.667 21.18 21.18 0.00 6.53
2334 2730 0.392461 TTTCCACTACATCTGGGCGC 60.392 55.000 0.00 0.00 0.00 6.53
2335 2731 2.107950 TTTTCCACTACATCTGGGCG 57.892 50.000 0.00 0.00 0.00 6.13
2336 2732 3.620488 TCATTTTCCACTACATCTGGGC 58.380 45.455 0.00 0.00 0.00 5.36
2337 2733 3.629398 GCTCATTTTCCACTACATCTGGG 59.371 47.826 0.00 0.00 0.00 4.45
2338 2734 4.264253 TGCTCATTTTCCACTACATCTGG 58.736 43.478 0.00 0.00 0.00 3.86
2339 2735 5.163683 CCTTGCTCATTTTCCACTACATCTG 60.164 44.000 0.00 0.00 0.00 2.90
2340 2736 4.946157 CCTTGCTCATTTTCCACTACATCT 59.054 41.667 0.00 0.00 0.00 2.90
2341 2737 4.096984 CCCTTGCTCATTTTCCACTACATC 59.903 45.833 0.00 0.00 0.00 3.06
2342 2738 4.019174 CCCTTGCTCATTTTCCACTACAT 58.981 43.478 0.00 0.00 0.00 2.29
2343 2739 3.181434 ACCCTTGCTCATTTTCCACTACA 60.181 43.478 0.00 0.00 0.00 2.74
2344 2740 3.421844 ACCCTTGCTCATTTTCCACTAC 58.578 45.455 0.00 0.00 0.00 2.73
2345 2741 3.330701 AGACCCTTGCTCATTTTCCACTA 59.669 43.478 0.00 0.00 0.00 2.74
2346 2742 2.108952 AGACCCTTGCTCATTTTCCACT 59.891 45.455 0.00 0.00 0.00 4.00
2347 2743 2.519013 AGACCCTTGCTCATTTTCCAC 58.481 47.619 0.00 0.00 0.00 4.02
2348 2744 2.978156 AGACCCTTGCTCATTTTCCA 57.022 45.000 0.00 0.00 0.00 3.53
2349 2745 3.862264 GCAAAGACCCTTGCTCATTTTCC 60.862 47.826 1.15 0.00 46.66 3.13
2350 2746 3.320626 GCAAAGACCCTTGCTCATTTTC 58.679 45.455 1.15 0.00 46.66 2.29
2351 2747 3.391506 GCAAAGACCCTTGCTCATTTT 57.608 42.857 1.15 0.00 46.66 1.82
2359 2755 3.610114 CGAGTCAAATGCAAAGACCCTTG 60.610 47.826 11.48 0.00 32.82 3.61
2360 2756 2.554032 CGAGTCAAATGCAAAGACCCTT 59.446 45.455 11.48 0.00 32.82 3.95
2361 2757 2.154462 CGAGTCAAATGCAAAGACCCT 58.846 47.619 11.48 0.00 32.82 4.34
2362 2758 2.095718 GTCGAGTCAAATGCAAAGACCC 60.096 50.000 11.48 1.57 32.82 4.46
2363 2759 2.411547 CGTCGAGTCAAATGCAAAGACC 60.412 50.000 11.48 4.72 32.82 3.85
2364 2760 2.475111 TCGTCGAGTCAAATGCAAAGAC 59.525 45.455 8.09 8.09 0.00 3.01
2365 2761 2.731451 CTCGTCGAGTCAAATGCAAAGA 59.269 45.455 14.27 0.00 0.00 2.52
2366 2762 2.476619 ACTCGTCGAGTCAAATGCAAAG 59.523 45.455 22.05 0.00 38.71 2.77
2367 2763 2.479837 ACTCGTCGAGTCAAATGCAAA 58.520 42.857 22.05 0.00 38.71 3.68
2368 2764 2.148916 ACTCGTCGAGTCAAATGCAA 57.851 45.000 22.05 0.00 38.71 4.08
2369 2765 2.592194 GTACTCGTCGAGTCAAATGCA 58.408 47.619 30.11 9.37 42.40 3.96
2370 2766 1.578023 CGTACTCGTCGAGTCAAATGC 59.422 52.381 30.11 13.57 42.40 3.56
2371 2767 3.113325 TCGTACTCGTCGAGTCAAATG 57.887 47.619 30.11 18.32 42.40 2.32
2372 2768 3.425892 CCTTCGTACTCGTCGAGTCAAAT 60.426 47.826 30.11 9.28 42.40 2.32
2373 2769 2.096069 CCTTCGTACTCGTCGAGTCAAA 60.096 50.000 30.11 20.06 42.40 2.69
2374 2770 1.462283 CCTTCGTACTCGTCGAGTCAA 59.538 52.381 30.11 19.28 42.40 3.18
2375 2771 1.073964 CCTTCGTACTCGTCGAGTCA 58.926 55.000 30.11 13.54 42.40 3.41
2376 2772 0.373024 CCCTTCGTACTCGTCGAGTC 59.627 60.000 30.11 19.65 42.40 3.36
2377 2773 1.023513 CCCCTTCGTACTCGTCGAGT 61.024 60.000 29.25 29.25 45.54 4.18
2378 2774 0.742281 TCCCCTTCGTACTCGTCGAG 60.742 60.000 20.57 20.57 38.52 4.04
2379 2775 0.321564 TTCCCCTTCGTACTCGTCGA 60.322 55.000 0.00 0.00 38.33 4.20
2380 2776 0.098376 CTTCCCCTTCGTACTCGTCG 59.902 60.000 0.00 0.00 38.33 5.12
2381 2777 0.455005 CCTTCCCCTTCGTACTCGTC 59.545 60.000 0.00 0.00 38.33 4.20
2382 2778 0.038744 TCCTTCCCCTTCGTACTCGT 59.961 55.000 0.00 0.00 38.33 4.18
2383 2779 1.134560 CTTCCTTCCCCTTCGTACTCG 59.865 57.143 0.00 0.00 38.55 4.18
2384 2780 1.134759 GCTTCCTTCCCCTTCGTACTC 60.135 57.143 0.00 0.00 0.00 2.59
2385 2781 0.903236 GCTTCCTTCCCCTTCGTACT 59.097 55.000 0.00 0.00 0.00 2.73
2386 2782 0.903236 AGCTTCCTTCCCCTTCGTAC 59.097 55.000 0.00 0.00 0.00 3.67
2387 2783 2.385803 CTAGCTTCCTTCCCCTTCGTA 58.614 52.381 0.00 0.00 0.00 3.43
2388 2784 1.196012 CTAGCTTCCTTCCCCTTCGT 58.804 55.000 0.00 0.00 0.00 3.85
2389 2785 0.179070 GCTAGCTTCCTTCCCCTTCG 60.179 60.000 7.70 0.00 0.00 3.79
2390 2786 0.181587 GGCTAGCTTCCTTCCCCTTC 59.818 60.000 15.72 0.00 0.00 3.46
2391 2787 1.627297 CGGCTAGCTTCCTTCCCCTT 61.627 60.000 15.72 0.00 0.00 3.95
2392 2788 2.066999 CGGCTAGCTTCCTTCCCCT 61.067 63.158 15.72 0.00 0.00 4.79
2393 2789 2.034048 CTCGGCTAGCTTCCTTCCCC 62.034 65.000 15.72 0.00 0.00 4.81
2394 2790 1.443828 CTCGGCTAGCTTCCTTCCC 59.556 63.158 15.72 0.00 0.00 3.97
2404 2800 0.039035 ATCCTCCTAGGCTCGGCTAG 59.961 60.000 17.73 17.73 34.61 3.42
2405 2801 0.483328 AATCCTCCTAGGCTCGGCTA 59.517 55.000 2.96 0.12 34.61 3.93
2406 2802 0.830023 GAATCCTCCTAGGCTCGGCT 60.830 60.000 2.96 0.00 34.61 5.52
2407 2803 1.668867 GAATCCTCCTAGGCTCGGC 59.331 63.158 2.96 0.00 34.61 5.54
2408 2804 1.960612 CGAATCCTCCTAGGCTCGG 59.039 63.158 2.96 4.54 37.03 4.63
2409 2805 1.175983 AGCGAATCCTCCTAGGCTCG 61.176 60.000 2.96 8.12 40.87 5.03
2410 2806 1.044611 AAGCGAATCCTCCTAGGCTC 58.955 55.000 2.96 0.00 34.61 4.70
2411 2807 2.243810 CTAAGCGAATCCTCCTAGGCT 58.756 52.381 2.96 0.00 34.61 4.58
2412 2808 1.273886 CCTAAGCGAATCCTCCTAGGC 59.726 57.143 2.96 0.00 34.61 3.93
2413 2809 2.599677 ACCTAAGCGAATCCTCCTAGG 58.400 52.381 0.82 0.82 36.46 3.02
2414 2810 3.191791 GCTACCTAAGCGAATCCTCCTAG 59.808 52.174 0.00 0.00 42.53 3.02
2415 2811 3.155501 GCTACCTAAGCGAATCCTCCTA 58.844 50.000 0.00 0.00 42.53 2.94
2416 2812 1.964933 GCTACCTAAGCGAATCCTCCT 59.035 52.381 0.00 0.00 42.53 3.69
2417 2813 2.442212 GCTACCTAAGCGAATCCTCC 57.558 55.000 0.00 0.00 42.53 4.30
2427 2823 3.967987 ACCCTATGTTCCAGCTACCTAAG 59.032 47.826 0.00 0.00 0.00 2.18
2428 2824 3.965347 GACCCTATGTTCCAGCTACCTAA 59.035 47.826 0.00 0.00 0.00 2.69
2429 2825 3.206866 AGACCCTATGTTCCAGCTACCTA 59.793 47.826 0.00 0.00 0.00 3.08
2430 2826 2.022918 AGACCCTATGTTCCAGCTACCT 60.023 50.000 0.00 0.00 0.00 3.08
2431 2827 2.399580 AGACCCTATGTTCCAGCTACC 58.600 52.381 0.00 0.00 0.00 3.18
2432 2828 4.081087 TCAAAGACCCTATGTTCCAGCTAC 60.081 45.833 0.00 0.00 0.00 3.58
2433 2829 4.081087 GTCAAAGACCCTATGTTCCAGCTA 60.081 45.833 0.00 0.00 0.00 3.32
2434 2830 2.912956 TCAAAGACCCTATGTTCCAGCT 59.087 45.455 0.00 0.00 0.00 4.24
2435 2831 3.010420 GTCAAAGACCCTATGTTCCAGC 58.990 50.000 0.00 0.00 0.00 4.85
2436 2832 4.020218 TCTGTCAAAGACCCTATGTTCCAG 60.020 45.833 0.00 0.00 0.00 3.86
2437 2833 3.907474 TCTGTCAAAGACCCTATGTTCCA 59.093 43.478 0.00 0.00 0.00 3.53
2438 2834 4.223032 TCTCTGTCAAAGACCCTATGTTCC 59.777 45.833 0.00 0.00 0.00 3.62
2439 2835 5.407407 TCTCTGTCAAAGACCCTATGTTC 57.593 43.478 0.00 0.00 0.00 3.18
2440 2836 5.799213 CTTCTCTGTCAAAGACCCTATGTT 58.201 41.667 0.00 0.00 0.00 2.71
2441 2837 4.323104 GCTTCTCTGTCAAAGACCCTATGT 60.323 45.833 0.00 0.00 0.00 2.29
2442 2838 4.081198 AGCTTCTCTGTCAAAGACCCTATG 60.081 45.833 0.00 0.00 0.00 2.23
2443 2839 4.100373 AGCTTCTCTGTCAAAGACCCTAT 58.900 43.478 0.00 0.00 0.00 2.57
2444 2840 3.511477 AGCTTCTCTGTCAAAGACCCTA 58.489 45.455 0.00 0.00 0.00 3.53
2445 2841 2.334023 AGCTTCTCTGTCAAAGACCCT 58.666 47.619 0.00 0.00 0.00 4.34
2446 2842 2.849294 AGCTTCTCTGTCAAAGACCC 57.151 50.000 0.00 0.00 0.00 4.46
2447 2843 2.734079 CGAAGCTTCTCTGTCAAAGACC 59.266 50.000 23.50 0.00 0.00 3.85
2448 2844 2.734079 CCGAAGCTTCTCTGTCAAAGAC 59.266 50.000 23.50 0.00 0.00 3.01
2449 2845 2.289072 CCCGAAGCTTCTCTGTCAAAGA 60.289 50.000 23.50 0.00 0.00 2.52
2450 2846 2.072298 CCCGAAGCTTCTCTGTCAAAG 58.928 52.381 23.50 5.18 0.00 2.77
2451 2847 1.691976 TCCCGAAGCTTCTCTGTCAAA 59.308 47.619 23.50 0.00 0.00 2.69
2452 2848 1.338107 TCCCGAAGCTTCTCTGTCAA 58.662 50.000 23.50 0.30 0.00 3.18
2453 2849 3.051617 TCCCGAAGCTTCTCTGTCA 57.948 52.632 23.50 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.