Multiple sequence alignment - TraesCS7A01G529600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G529600 chr7A 100.000 2610 0 0 1 2610 709265673 709263064 0.000000e+00 4820.0
1 TraesCS7A01G529600 chr7A 80.869 1542 244 27 172 1690 709755449 709756962 0.000000e+00 1166.0
2 TraesCS7A01G529600 chr7A 80.987 1520 234 37 193 1691 709285518 709284033 0.000000e+00 1155.0
3 TraesCS7A01G529600 chr7A 80.088 457 82 7 13 462 709788174 709788628 5.380000e-87 331.0
4 TraesCS7A01G529600 chr7A 86.420 162 21 1 1 162 709755318 709755478 2.670000e-40 176.0
5 TraesCS7A01G529600 chr7A 95.413 109 5 0 1 109 709285659 709285551 9.600000e-40 174.0
6 TraesCS7A01G529600 chr7D 93.076 2484 111 21 1 2425 616219941 616222422 0.000000e+00 3578.0
7 TraesCS7A01G529600 chr7D 89.754 1464 126 6 1 1458 616257548 616256103 0.000000e+00 1851.0
8 TraesCS7A01G529600 chr7D 81.108 1498 241 24 205 1690 616276222 616274755 0.000000e+00 1160.0
9 TraesCS7A01G529600 chr7D 80.337 1541 250 27 172 1690 617027978 617029487 0.000000e+00 1118.0
10 TraesCS7A01G529600 chr7D 86.260 1048 94 29 1531 2529 616256075 616255029 0.000000e+00 1092.0
11 TraesCS7A01G529600 chr7D 79.707 1434 246 29 279 1690 616331549 616330139 0.000000e+00 994.0
12 TraesCS7A01G529600 chr7D 77.526 881 159 31 205 1068 617010154 617011012 6.490000e-136 494.0
13 TraesCS7A01G529600 chr7D 87.654 162 20 0 1 162 617027846 617028007 3.430000e-44 189.0
14 TraesCS7A01G529600 chr7D 100.000 35 0 0 2576 2610 616222424 616222458 6.030000e-07 65.8
15 TraesCS7A01G529600 chr7B 81.126 1510 220 38 206 1690 709591701 709590232 0.000000e+00 1149.0
16 TraesCS7A01G529600 chr7B 80.084 1426 227 28 213 1629 709530403 709529026 0.000000e+00 1007.0
17 TraesCS7A01G529600 chr7B 82.886 298 49 1 1330 1627 709514308 709514013 1.540000e-67 267.0
18 TraesCS7A01G529600 chr7B 95.413 109 5 0 1 109 709530564 709530456 9.600000e-40 174.0
19 TraesCS7A01G529600 chr7B 85.380 171 19 2 1 165 709591873 709591703 3.450000e-39 172.0
20 TraesCS7A01G529600 chr7B 78.707 263 40 11 1413 1663 711206550 711206808 7.480000e-36 161.0
21 TraesCS7A01G529600 chr1B 76.384 1499 283 42 203 1677 677254878 677256329 0.000000e+00 741.0
22 TraesCS7A01G529600 chr1A 76.259 1449 273 33 203 1627 583924634 583926035 0.000000e+00 704.0
23 TraesCS7A01G529600 chr1D 85.802 162 23 0 1 162 408626013 408626174 3.450000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G529600 chr7A 709263064 709265673 2609 True 4820.0 4820 100.0000 1 2610 1 chr7A.!!$R1 2609
1 TraesCS7A01G529600 chr7A 709755318 709756962 1644 False 671.0 1166 83.6445 1 1690 2 chr7A.!!$F2 1689
2 TraesCS7A01G529600 chr7A 709284033 709285659 1626 True 664.5 1155 88.2000 1 1691 2 chr7A.!!$R2 1690
3 TraesCS7A01G529600 chr7D 616219941 616222458 2517 False 1821.9 3578 96.5380 1 2610 2 chr7D.!!$F2 2609
4 TraesCS7A01G529600 chr7D 616255029 616257548 2519 True 1471.5 1851 88.0070 1 2529 2 chr7D.!!$R3 2528
5 TraesCS7A01G529600 chr7D 616274755 616276222 1467 True 1160.0 1160 81.1080 205 1690 1 chr7D.!!$R1 1485
6 TraesCS7A01G529600 chr7D 616330139 616331549 1410 True 994.0 994 79.7070 279 1690 1 chr7D.!!$R2 1411
7 TraesCS7A01G529600 chr7D 617027846 617029487 1641 False 653.5 1118 83.9955 1 1690 2 chr7D.!!$F3 1689
8 TraesCS7A01G529600 chr7D 617010154 617011012 858 False 494.0 494 77.5260 205 1068 1 chr7D.!!$F1 863
9 TraesCS7A01G529600 chr7B 709590232 709591873 1641 True 660.5 1149 83.2530 1 1690 2 chr7B.!!$R3 1689
10 TraesCS7A01G529600 chr7B 709529026 709530564 1538 True 590.5 1007 87.7485 1 1629 2 chr7B.!!$R2 1628
11 TraesCS7A01G529600 chr1B 677254878 677256329 1451 False 741.0 741 76.3840 203 1677 1 chr1B.!!$F1 1474
12 TraesCS7A01G529600 chr1A 583924634 583926035 1401 False 704.0 704 76.2590 203 1627 1 chr1A.!!$F1 1424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 318 0.321919 TCAAGTGTGGCCTGCTCATC 60.322 55.000 3.32 0.0 0.00 2.92 F
712 727 1.351017 ACGGATGTCCAGATGGTTGTT 59.649 47.619 0.00 0.0 36.34 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1327 0.033011 AGCACCGGGACTCAGATAGT 60.033 55.0 6.32 0.0 42.8 2.12 R
2488 2651 0.114954 TCCCTTGGGCTTGCAGAAAT 59.885 50.0 0.00 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 5.142635 TGCGATCTATGTTTCAATGAACG 57.857 39.130 0.00 0.00 32.18 3.95
247 254 7.862372 GCAAAGTTCATTGAGACTGTAAATTCA 59.138 33.333 3.36 0.00 31.84 2.57
269 277 4.336433 CAGTTATTCAACAGCATAGTGGGG 59.664 45.833 0.00 0.00 37.10 4.96
309 317 0.330604 ATCAAGTGTGGCCTGCTCAT 59.669 50.000 3.32 0.00 0.00 2.90
310 318 0.321919 TCAAGTGTGGCCTGCTCATC 60.322 55.000 3.32 0.00 0.00 2.92
369 377 2.476241 CCGCTTCATCAAAGGCAAAAAC 59.524 45.455 0.00 0.00 35.37 2.43
421 429 2.225117 CCCAGTTGAAGAAGTTCCCCAT 60.225 50.000 0.00 0.00 0.00 4.00
458 469 2.977772 AGATGCTCAAGGTAGCTCAC 57.022 50.000 0.00 0.00 43.19 3.51
643 655 2.808543 GTGTTCTGGTGTGGATGACTTC 59.191 50.000 0.00 0.00 0.00 3.01
657 669 5.456192 GATGACTTCATCGTACCAAACAG 57.544 43.478 3.49 0.00 42.66 3.16
712 727 1.351017 ACGGATGTCCAGATGGTTGTT 59.649 47.619 0.00 0.00 36.34 2.83
745 760 6.038382 CAGCTGATCTTGCTCATTTTGAGTAT 59.962 38.462 8.42 0.00 45.94 2.12
827 843 5.092554 TGCGTTTGATCCACTAATCCTTA 57.907 39.130 0.00 0.00 0.00 2.69
850 866 2.033372 CACTGGCCCATGCATTCAATA 58.967 47.619 0.00 0.00 40.13 1.90
856 872 6.725369 ACTGGCCCATGCATTCAATATAATTA 59.275 34.615 0.00 0.00 40.13 1.40
1184 1226 4.726416 CACTTGCATGTGAGTACCATTTC 58.274 43.478 24.41 0.00 40.12 2.17
1256 1311 3.569701 AGTTTGACCGAATGATTGCAAGT 59.430 39.130 4.94 0.00 0.00 3.16
1428 1488 4.400567 GTGCTCTATCTTGGGAAATGCTTT 59.599 41.667 0.00 0.00 0.00 3.51
1432 1492 6.095440 GCTCTATCTTGGGAAATGCTTTTGTA 59.905 38.462 1.76 0.00 0.00 2.41
1450 1510 3.329386 TGTACTTGAGCAGCTGACAATC 58.671 45.455 20.43 9.69 0.00 2.67
1486 1549 5.240183 CACAGAAGCAATATGGGGTGATAAG 59.760 44.000 0.00 0.00 0.00 1.73
1488 1551 5.471456 CAGAAGCAATATGGGGTGATAAGTC 59.529 44.000 0.00 0.00 0.00 3.01
1493 1556 5.705905 GCAATATGGGGTGATAAGTCTTACC 59.294 44.000 0.00 0.00 0.00 2.85
1503 1566 7.202102 GGGTGATAAGTCTTACCAGTGGAATAT 60.202 40.741 18.40 0.00 34.89 1.28
1702 1784 0.761802 GGGAGAATGCCCCTGTAGAG 59.238 60.000 0.00 0.00 43.14 2.43
1726 1808 5.989777 GTGTAGTGACTGTTTTGGTGTCTAT 59.010 40.000 0.00 0.00 0.00 1.98
1738 1820 7.671819 TGTTTTGGTGTCTATAAATGGAATCCA 59.328 33.333 3.67 3.67 38.19 3.41
1786 1881 8.463930 AAAAACAAGTAATCTCTGGTTCATCA 57.536 30.769 0.00 0.00 0.00 3.07
1835 1932 1.205655 GTGTCTCCAGTGCATCTGCTA 59.794 52.381 9.88 1.85 42.38 3.49
1837 1934 2.502947 TGTCTCCAGTGCATCTGCTATT 59.497 45.455 9.88 0.00 42.38 1.73
1872 1974 5.096443 TCATTTTGCCTTGTTTCAACCTT 57.904 34.783 0.00 0.00 0.00 3.50
1893 2007 8.059461 AACCTTTAAGAGGGTTATTATTGGAGG 58.941 37.037 7.50 0.00 45.88 4.30
1924 2038 4.752101 AGAACTCTGAATGGTGAAAACTCG 59.248 41.667 0.00 0.00 0.00 4.18
1949 2064 8.869897 CGAACAAACTTAATTGCACTCTATCTA 58.130 33.333 0.00 0.00 33.52 1.98
1999 2118 6.657541 TGAAAGAAGAAGACTCTCTCTAGGTC 59.342 42.308 0.00 0.00 0.00 3.85
2003 2122 0.913205 AGACTCTCTCTAGGTCCGCA 59.087 55.000 0.00 0.00 0.00 5.69
2125 2244 2.267351 CGAAACCATGCCACTGCCA 61.267 57.895 0.00 0.00 36.33 4.92
2259 2397 2.710377 CTGAATGTTTCGGATCACCCA 58.290 47.619 0.00 0.00 38.34 4.51
2383 2533 2.279851 CACTTGTCGGTGGCGACA 60.280 61.111 0.00 0.00 45.63 4.35
2443 2606 9.650539 GTATCAGTATTAGCTCATGAATGATGT 57.349 33.333 0.00 0.00 36.02 3.06
2456 2619 7.151308 TCATGAATGATGTACATGCGTGTATA 58.849 34.615 21.19 18.83 46.40 1.47
2464 2627 5.103687 TGTACATGCGTGTATATCGTTGTT 58.896 37.500 21.19 0.00 42.43 2.83
2466 2629 5.883328 ACATGCGTGTATATCGTTGTTAG 57.117 39.130 10.57 0.00 36.63 2.34
2488 2651 9.314321 GTTAGATTGCTGTAGCTAAATGAACTA 57.686 33.333 5.38 0.00 42.66 2.24
2492 2655 9.657121 GATTGCTGTAGCTAAATGAACTATTTC 57.343 33.333 5.38 0.00 42.66 2.17
2509 2672 0.105760 TTCTGCAAGCCCAAGGGAAA 60.106 50.000 9.92 0.00 37.50 3.13
2516 2679 1.742308 AGCCCAAGGGAAACTACTGA 58.258 50.000 9.92 0.00 37.50 3.41
2522 2685 3.251571 CAAGGGAAACTACTGACGCTAC 58.748 50.000 0.00 0.00 0.00 3.58
2523 2686 1.823610 AGGGAAACTACTGACGCTACC 59.176 52.381 0.00 0.00 0.00 3.18
2529 2692 5.395682 AAACTACTGACGCTACCATGTTA 57.604 39.130 0.00 0.00 0.00 2.41
2530 2693 4.367386 ACTACTGACGCTACCATGTTAC 57.633 45.455 0.00 0.00 0.00 2.50
2531 2694 4.015084 ACTACTGACGCTACCATGTTACT 58.985 43.478 0.00 0.00 0.00 2.24
2532 2695 3.955650 ACTGACGCTACCATGTTACTT 57.044 42.857 0.00 0.00 0.00 2.24
2533 2696 3.585862 ACTGACGCTACCATGTTACTTG 58.414 45.455 0.00 0.00 0.00 3.16
2534 2697 3.006537 ACTGACGCTACCATGTTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2535 2698 4.219070 ACTGACGCTACCATGTTACTTGTA 59.781 41.667 0.00 0.00 0.00 2.41
2536 2699 5.136816 TGACGCTACCATGTTACTTGTAA 57.863 39.130 0.00 0.00 0.00 2.41
2537 2700 5.539979 TGACGCTACCATGTTACTTGTAAA 58.460 37.500 0.00 0.00 0.00 2.01
2538 2701 5.406175 TGACGCTACCATGTTACTTGTAAAC 59.594 40.000 0.00 0.00 0.00 2.01
2539 2702 5.544650 ACGCTACCATGTTACTTGTAAACT 58.455 37.500 0.00 0.00 0.00 2.66
2540 2703 5.407387 ACGCTACCATGTTACTTGTAAACTG 59.593 40.000 0.00 0.00 0.00 3.16
2541 2704 5.636121 CGCTACCATGTTACTTGTAAACTGA 59.364 40.000 0.00 0.00 0.00 3.41
2542 2705 6.400727 CGCTACCATGTTACTTGTAAACTGAC 60.401 42.308 0.00 0.00 0.00 3.51
2543 2706 6.425721 GCTACCATGTTACTTGTAAACTGACA 59.574 38.462 0.00 0.00 0.00 3.58
2544 2707 7.041644 GCTACCATGTTACTTGTAAACTGACAA 60.042 37.037 0.00 0.00 36.98 3.18
2545 2708 7.023197 ACCATGTTACTTGTAAACTGACAAC 57.977 36.000 0.00 0.00 34.40 3.32
2546 2709 6.826741 ACCATGTTACTTGTAAACTGACAACT 59.173 34.615 0.00 0.00 34.40 3.16
2547 2710 7.012044 ACCATGTTACTTGTAAACTGACAACTC 59.988 37.037 0.00 0.00 34.40 3.01
2548 2711 6.578020 TGTTACTTGTAAACTGACAACTCG 57.422 37.500 0.00 0.00 34.40 4.18
2549 2712 5.005971 TGTTACTTGTAAACTGACAACTCGC 59.994 40.000 0.00 0.00 34.40 5.03
2550 2713 2.538449 ACTTGTAAACTGACAACTCGCG 59.462 45.455 0.00 0.00 34.40 5.87
2551 2714 0.856641 TGTAAACTGACAACTCGCGC 59.143 50.000 0.00 0.00 0.00 6.86
2552 2715 0.856641 GTAAACTGACAACTCGCGCA 59.143 50.000 8.75 0.00 0.00 6.09
2553 2716 0.856641 TAAACTGACAACTCGCGCAC 59.143 50.000 8.75 0.00 0.00 5.34
2554 2717 1.087202 AAACTGACAACTCGCGCACA 61.087 50.000 8.75 0.00 0.00 4.57
2555 2718 1.762222 AACTGACAACTCGCGCACAC 61.762 55.000 8.75 0.00 0.00 3.82
2556 2719 2.202810 TGACAACTCGCGCACACA 60.203 55.556 8.75 0.00 0.00 3.72
2557 2720 1.560004 CTGACAACTCGCGCACACAT 61.560 55.000 8.75 0.00 0.00 3.21
2558 2721 1.157257 TGACAACTCGCGCACACATT 61.157 50.000 8.75 0.00 0.00 2.71
2559 2722 0.722469 GACAACTCGCGCACACATTG 60.722 55.000 8.75 6.76 0.00 2.82
2567 2730 2.262292 GCACACATTGCGGCCAAT 59.738 55.556 2.24 0.00 42.79 3.16
2568 2731 1.374505 GCACACATTGCGGCCAATT 60.375 52.632 2.24 0.00 42.79 2.32
2569 2732 0.950071 GCACACATTGCGGCCAATTT 60.950 50.000 2.24 0.00 42.79 1.82
2570 2733 0.791422 CACACATTGCGGCCAATTTG 59.209 50.000 2.24 1.73 42.21 2.32
2571 2734 0.678395 ACACATTGCGGCCAATTTGA 59.322 45.000 16.49 0.00 40.08 2.69
2572 2735 1.337074 ACACATTGCGGCCAATTTGAG 60.337 47.619 16.49 0.00 40.08 3.02
2573 2736 0.390209 ACATTGCGGCCAATTTGAGC 60.390 50.000 2.24 0.00 39.60 4.26
2574 2737 0.390078 CATTGCGGCCAATTTGAGCA 60.390 50.000 2.24 0.00 39.60 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 2.351726 GTGTTAGAATCCACATCACCGC 59.648 50.000 0.00 0.00 0.00 5.68
247 254 4.018415 ACCCCACTATGCTGTTGAATAACT 60.018 41.667 0.00 0.00 37.68 2.24
269 277 7.792374 TGATGCTGAACTTATTGATTCCTAC 57.208 36.000 0.00 0.00 0.00 3.18
309 317 3.191581 GTCAAGATGTTCAGAGTCCTCGA 59.808 47.826 0.00 0.00 34.09 4.04
310 318 3.057245 TGTCAAGATGTTCAGAGTCCTCG 60.057 47.826 0.00 0.00 34.09 4.63
383 391 9.527157 TTCAACTGGGTAATCAAATATCTTCAA 57.473 29.630 0.00 0.00 0.00 2.69
458 469 2.540265 AGAGACAAGGACTGCACAAG 57.460 50.000 0.00 0.00 0.00 3.16
643 655 3.211803 TCGAGTCTGTTTGGTACGATG 57.788 47.619 0.00 0.00 0.00 3.84
653 665 9.450807 CAAATTTTGAAGTTTATCGAGTCTGTT 57.549 29.630 2.88 0.00 0.00 3.16
657 669 7.803189 TCAGCAAATTTTGAAGTTTATCGAGTC 59.197 33.333 13.26 0.00 0.00 3.36
712 727 3.813724 GAGCAAGATCAGCTGCATGAATA 59.186 43.478 16.22 0.00 43.58 1.75
745 760 2.820728 TAGGGATCAGTCGTCCTTCA 57.179 50.000 0.00 0.00 36.00 3.02
850 866 6.194235 TCACTGGGGAAATGCTTGTAATTAT 58.806 36.000 0.00 0.00 0.00 1.28
856 872 2.158475 TCTTCACTGGGGAAATGCTTGT 60.158 45.455 0.00 0.00 0.00 3.16
1221 1276 7.789273 TTCGGTCAAACTAATCAAACTACAA 57.211 32.000 0.00 0.00 0.00 2.41
1272 1327 0.033011 AGCACCGGGACTCAGATAGT 60.033 55.000 6.32 0.00 42.80 2.12
1283 1338 1.856265 GCACTGAAGAAAGCACCGGG 61.856 60.000 6.32 0.00 0.00 5.73
1428 1488 2.908688 TGTCAGCTGCTCAAGTACAA 57.091 45.000 9.47 0.00 0.00 2.41
1432 1492 1.001293 TCGATTGTCAGCTGCTCAAGT 59.999 47.619 21.72 13.72 0.00 3.16
1450 1510 1.151668 CTTCTGTGAGCCTTGGTTCG 58.848 55.000 0.00 0.00 0.00 3.95
1486 1549 4.593634 AGGCCTATATTCCACTGGTAAGAC 59.406 45.833 1.29 0.00 0.00 3.01
1488 1551 5.071788 TCAAGGCCTATATTCCACTGGTAAG 59.928 44.000 5.16 0.00 0.00 2.34
1493 1556 5.684704 TCTTTCAAGGCCTATATTCCACTG 58.315 41.667 5.16 0.00 0.00 3.66
1503 1566 6.210584 CCTTGGTAAAATTCTTTCAAGGCCTA 59.789 38.462 5.16 0.00 38.59 3.93
1702 1784 4.189231 AGACACCAAAACAGTCACTACAC 58.811 43.478 0.00 0.00 34.80 2.90
1726 1808 4.588528 GCAAAGCCCTATGGATTCCATTTA 59.411 41.667 22.87 5.77 42.23 1.40
1872 1974 8.711170 CAGTACCTCCAATAATAACCCTCTTAA 58.289 37.037 0.00 0.00 0.00 1.85
1893 2007 6.223852 TCACCATTCAGAGTTCTTTCAGTAC 58.776 40.000 0.00 0.00 0.00 2.73
1949 2064 3.765511 AGCTGGCAAATGTGTACATGAAT 59.234 39.130 0.00 0.00 36.56 2.57
1999 2118 3.312421 ACATTTTTCATATCGAGGTGCGG 59.688 43.478 0.00 0.00 41.33 5.69
2031 2150 9.643693 ATTTTGTTTAGATGCTCTGTATTTTGG 57.356 29.630 0.00 0.00 0.00 3.28
2125 2244 1.896465 CTTCAGGTTCCTCCTCGACTT 59.104 52.381 0.00 0.00 46.24 3.01
2217 2355 4.540359 CAAAATTTGCTGGAGGATGGAA 57.460 40.909 0.00 0.00 0.00 3.53
2249 2387 1.021390 GCAGTGAACTGGGTGATCCG 61.021 60.000 12.20 0.00 43.94 4.18
2259 2397 2.028658 AGTGATGTCGATGCAGTGAACT 60.029 45.455 0.00 0.00 0.00 3.01
2335 2485 1.691976 ACCAATGGTGTTCTCGTCTCA 59.308 47.619 3.09 0.00 32.98 3.27
2336 2486 2.457366 ACCAATGGTGTTCTCGTCTC 57.543 50.000 3.09 0.00 32.98 3.36
2443 2606 6.727215 TCTAACAACGATATACACGCATGTA 58.273 36.000 0.00 0.00 45.37 2.29
2456 2619 4.759782 AGCTACAGCAATCTAACAACGAT 58.240 39.130 3.70 0.00 45.16 3.73
2461 2624 7.824289 AGTTCATTTAGCTACAGCAATCTAACA 59.176 33.333 3.70 0.00 45.16 2.41
2466 2629 9.657121 GAAATAGTTCATTTAGCTACAGCAATC 57.343 33.333 3.70 0.00 39.16 2.67
2488 2651 0.114954 TCCCTTGGGCTTGCAGAAAT 59.885 50.000 0.00 0.00 0.00 2.17
2492 2655 0.829182 AGTTTCCCTTGGGCTTGCAG 60.829 55.000 0.00 0.00 0.00 4.41
2509 2672 4.015084 AGTAACATGGTAGCGTCAGTAGT 58.985 43.478 0.00 0.00 0.00 2.73
2516 2679 5.407387 CAGTTTACAAGTAACATGGTAGCGT 59.593 40.000 0.00 0.00 0.00 5.07
2522 2685 7.259290 AGTTGTCAGTTTACAAGTAACATGG 57.741 36.000 0.00 0.00 40.41 3.66
2523 2686 7.063456 CGAGTTGTCAGTTTACAAGTAACATG 58.937 38.462 0.00 0.00 41.86 3.21
2529 2692 2.538449 CGCGAGTTGTCAGTTTACAAGT 59.462 45.455 0.00 0.00 43.92 3.16
2530 2693 2.659291 GCGCGAGTTGTCAGTTTACAAG 60.659 50.000 12.10 0.00 39.92 3.16
2531 2694 1.259507 GCGCGAGTTGTCAGTTTACAA 59.740 47.619 12.10 0.00 37.03 2.41
2532 2695 0.856641 GCGCGAGTTGTCAGTTTACA 59.143 50.000 12.10 0.00 0.00 2.41
2533 2696 0.856641 TGCGCGAGTTGTCAGTTTAC 59.143 50.000 12.10 0.00 0.00 2.01
2534 2697 0.856641 GTGCGCGAGTTGTCAGTTTA 59.143 50.000 12.10 0.00 0.00 2.01
2535 2698 1.087202 TGTGCGCGAGTTGTCAGTTT 61.087 50.000 12.10 0.00 0.00 2.66
2536 2699 1.520564 TGTGCGCGAGTTGTCAGTT 60.521 52.632 12.10 0.00 0.00 3.16
2537 2700 2.106131 TGTGCGCGAGTTGTCAGT 59.894 55.556 12.10 0.00 0.00 3.41
2538 2701 1.560004 ATGTGTGCGCGAGTTGTCAG 61.560 55.000 12.10 0.00 0.00 3.51
2539 2702 1.157257 AATGTGTGCGCGAGTTGTCA 61.157 50.000 12.10 0.40 0.00 3.58
2540 2703 0.722469 CAATGTGTGCGCGAGTTGTC 60.722 55.000 12.10 0.00 0.00 3.18
2541 2704 1.279539 CAATGTGTGCGCGAGTTGT 59.720 52.632 12.10 0.00 0.00 3.32
2542 2705 2.076628 GCAATGTGTGCGCGAGTTG 61.077 57.895 12.10 5.76 45.10 3.16
2543 2706 2.252260 GCAATGTGTGCGCGAGTT 59.748 55.556 12.10 0.00 45.10 3.01
2551 2714 0.791422 CAAATTGGCCGCAATGTGTG 59.209 50.000 0.00 0.00 0.00 3.82
2552 2715 0.678395 TCAAATTGGCCGCAATGTGT 59.322 45.000 0.00 0.00 32.90 3.72
2553 2716 1.352114 CTCAAATTGGCCGCAATGTG 58.648 50.000 0.00 0.00 32.47 3.21
2554 2717 0.390209 GCTCAAATTGGCCGCAATGT 60.390 50.000 0.00 0.00 0.00 2.71
2555 2718 0.390078 TGCTCAAATTGGCCGCAATG 60.390 50.000 0.00 0.00 0.00 2.82
2556 2719 0.538118 ATGCTCAAATTGGCCGCAAT 59.462 45.000 3.28 0.00 33.94 3.56
2557 2720 0.390078 CATGCTCAAATTGGCCGCAA 60.390 50.000 3.28 0.00 33.94 4.85
2558 2721 1.215912 CATGCTCAAATTGGCCGCA 59.784 52.632 0.00 0.00 34.83 5.69
2559 2722 0.526954 CTCATGCTCAAATTGGCCGC 60.527 55.000 0.00 0.00 0.00 6.53
2560 2723 0.526954 GCTCATGCTCAAATTGGCCG 60.527 55.000 0.00 0.00 36.03 6.13
2561 2724 0.533491 TGCTCATGCTCAAATTGGCC 59.467 50.000 0.00 0.00 40.48 5.36
2562 2725 1.475280 TCTGCTCATGCTCAAATTGGC 59.525 47.619 0.00 0.00 40.48 4.52
2563 2726 3.014623 TCTCTGCTCATGCTCAAATTGG 58.985 45.455 0.00 0.00 40.48 3.16
2564 2727 3.487711 GCTCTCTGCTCATGCTCAAATTG 60.488 47.826 0.00 0.00 40.48 2.32
2565 2728 2.683867 GCTCTCTGCTCATGCTCAAATT 59.316 45.455 0.00 0.00 40.48 1.82
2566 2729 2.290464 GCTCTCTGCTCATGCTCAAAT 58.710 47.619 0.00 0.00 40.48 2.32
2567 2730 1.002773 TGCTCTCTGCTCATGCTCAAA 59.997 47.619 0.00 0.00 43.37 2.69
2568 2731 0.611714 TGCTCTCTGCTCATGCTCAA 59.388 50.000 0.00 0.00 43.37 3.02
2569 2732 0.831307 ATGCTCTCTGCTCATGCTCA 59.169 50.000 0.00 0.00 43.37 4.26
2570 2733 1.069513 AGATGCTCTCTGCTCATGCTC 59.930 52.381 0.00 0.00 43.37 4.26
2571 2734 1.069513 GAGATGCTCTCTGCTCATGCT 59.930 52.381 6.07 0.00 40.30 3.79
2572 2735 1.202545 TGAGATGCTCTCTGCTCATGC 60.203 52.381 12.45 0.00 43.73 4.06
2573 2736 2.892784 TGAGATGCTCTCTGCTCATG 57.107 50.000 12.45 0.00 43.73 3.07
2574 2737 2.103432 CCTTGAGATGCTCTCTGCTCAT 59.897 50.000 12.45 0.00 43.73 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.