Multiple sequence alignment - TraesCS7A01G529300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G529300 chr7A 100.000 5383 0 0 1 5383 709163609 709168991 0.000000e+00 9941.0
1 TraesCS7A01G529300 chr7A 98.004 2054 36 2 3331 5383 7713727 7715776 0.000000e+00 3561.0
2 TraesCS7A01G529300 chr7A 96.796 1592 33 3 3331 4918 113435504 113433927 0.000000e+00 2641.0
3 TraesCS7A01G529300 chr7A 95.033 1208 57 2 1454 2660 88817601 88818806 0.000000e+00 1895.0
4 TraesCS7A01G529300 chr7A 94.276 1223 67 3 1456 2675 721878645 721879867 0.000000e+00 1868.0
5 TraesCS7A01G529300 chr7A 94.366 1207 65 3 1456 2660 85204103 85202898 0.000000e+00 1849.0
6 TraesCS7A01G529300 chr7A 94.210 1209 64 4 1456 2660 709273620 709272414 0.000000e+00 1840.0
7 TraesCS7A01G529300 chr7A 98.928 746 8 0 1 746 24606122 24605377 0.000000e+00 1334.0
8 TraesCS7A01G529300 chr7A 98.929 747 7 1 1 746 709156610 709157356 0.000000e+00 1334.0
9 TraesCS7A01G529300 chr7A 98.925 744 8 0 1 744 254865952 254866695 0.000000e+00 1330.0
10 TraesCS7A01G529300 chr7A 98.794 746 9 0 1 746 254858957 254859702 0.000000e+00 1328.0
11 TraesCS7A01G529300 chr7A 98.792 745 9 0 1 745 24599130 24598386 0.000000e+00 1327.0
12 TraesCS7A01G529300 chr7A 95.512 713 31 1 745 1457 113436212 113435501 0.000000e+00 1138.0
13 TraesCS7A01G529300 chr7A 92.623 732 34 2 745 1457 7713000 7713730 0.000000e+00 1035.0
14 TraesCS7A01G529300 chr7A 93.119 683 41 4 2651 3330 709272465 709271786 0.000000e+00 996.0
15 TraesCS7A01G529300 chr7A 92.619 691 41 7 2651 3334 23750422 23751109 0.000000e+00 985.0
16 TraesCS7A01G529300 chr7A 97.436 39 1 0 3533 3571 366389529 366389491 3.480000e-07 67.6
17 TraesCS7A01G529300 chr2A 95.037 1209 58 2 1454 2660 682012684 682013892 0.000000e+00 1899.0
18 TraesCS7A01G529300 chr2A 94.706 1209 59 5 1456 2662 586905113 586906318 0.000000e+00 1873.0
19 TraesCS7A01G529300 chr2A 94.527 1206 64 2 1456 2660 100851198 100849994 0.000000e+00 1860.0
20 TraesCS7A01G529300 chr2A 94.583 683 31 5 2651 3332 682013841 682014518 0.000000e+00 1051.0
21 TraesCS7A01G529300 chr2A 87.218 133 12 2 715 844 562694756 562694626 4.340000e-31 147.0
22 TraesCS7A01G529300 chr2A 95.349 43 0 2 3534 3576 57968357 57968317 3.480000e-07 67.6
23 TraesCS7A01G529300 chr3A 94.408 1216 54 9 1452 2660 290419930 290421138 0.000000e+00 1857.0
24 TraesCS7A01G529300 chr3A 94.444 1206 62 4 1456 2660 583232463 583233664 0.000000e+00 1851.0
25 TraesCS7A01G529300 chr3A 95.349 43 0 2 3534 3576 6676101 6676061 3.480000e-07 67.6
26 TraesCS7A01G529300 chr6B 99.196 746 6 0 1 746 574679169 574678424 0.000000e+00 1345.0
27 TraesCS7A01G529300 chr7B 99.062 746 7 0 1 746 306660916 306660171 0.000000e+00 1339.0
28 TraesCS7A01G529300 chr7B 93.289 760 43 4 4290 5047 611522197 611522950 0.000000e+00 1114.0
29 TraesCS7A01G529300 chr7B 91.884 690 43 6 2651 3334 713959156 713959838 0.000000e+00 952.0
30 TraesCS7A01G529300 chr7B 91.412 687 43 11 2651 3334 155465664 155466337 0.000000e+00 928.0
31 TraesCS7A01G529300 chr7B 98.000 100 2 0 745 844 613149103 613149004 1.990000e-39 174.0
32 TraesCS7A01G529300 chr7B 100.000 36 0 0 3533 3568 206435082 206435117 3.480000e-07 67.6
33 TraesCS7A01G529300 chr1B 98.795 747 8 1 1 746 163810846 163811592 0.000000e+00 1328.0
34 TraesCS7A01G529300 chr2B 98.276 754 11 2 1 754 744212503 744213254 0.000000e+00 1319.0
35 TraesCS7A01G529300 chr2B 92.274 686 41 5 2651 3331 157727022 157726344 0.000000e+00 963.0
36 TraesCS7A01G529300 chr2B 85.024 828 111 7 1980 2795 43219745 43220571 0.000000e+00 830.0
37 TraesCS7A01G529300 chr1A 94.067 691 30 6 2651 3335 579955649 579956334 0.000000e+00 1038.0
38 TraesCS7A01G529300 chr1A 81.846 1311 164 33 2092 3338 532413105 532411805 0.000000e+00 1035.0
39 TraesCS7A01G529300 chr1A 93.243 74 4 1 889 961 490515407 490515480 2.050000e-19 108.0
40 TraesCS7A01G529300 chr1A 95.349 43 0 2 3534 3576 291673161 291673201 3.480000e-07 67.6
41 TraesCS7A01G529300 chr1A 93.023 43 1 2 3534 3576 309693124 309693084 1.620000e-05 62.1
42 TraesCS7A01G529300 chr5A 96.321 598 22 0 4585 5182 384429120 384428523 0.000000e+00 983.0
43 TraesCS7A01G529300 chr5A 81.616 359 41 13 3906 4258 656883996 656883657 1.910000e-69 274.0
44 TraesCS7A01G529300 chr5B 91.654 683 44 6 2651 3331 545282509 545283180 0.000000e+00 933.0
45 TraesCS7A01G529300 chr5B 92.720 261 15 4 4254 4512 632343302 632343560 1.830000e-99 374.0
46 TraesCS7A01G529300 chr5B 88.514 296 21 6 3906 4188 665770471 665770176 3.990000e-91 346.0
47 TraesCS7A01G529300 chr4D 90.376 426 39 1 3331 3756 465589392 465588969 4.710000e-155 558.0
48 TraesCS7A01G529300 chr4D 100.000 33 0 0 3534 3566 29430358 29430390 1.620000e-05 62.1
49 TraesCS7A01G529300 chr6D 92.746 386 18 6 4254 4637 23059904 23060281 2.830000e-152 549.0
50 TraesCS7A01G529300 chr6D 97.368 38 1 0 3534 3571 176220938 176220901 1.250000e-06 65.8
51 TraesCS7A01G529300 chr6D 97.368 38 1 0 3534 3571 444659481 444659444 1.250000e-06 65.8
52 TraesCS7A01G529300 chrUn 93.239 355 23 1 3906 4259 22414552 22414906 6.180000e-144 521.0
53 TraesCS7A01G529300 chrUn 95.349 43 0 2 3534 3576 101226593 101226633 3.480000e-07 67.6
54 TraesCS7A01G529300 chr5D 89.583 288 25 4 3906 4188 528730140 528729853 1.430000e-95 361.0
55 TraesCS7A01G529300 chr5D 91.473 258 22 0 3906 4163 22424466 22424209 6.630000e-94 355.0
56 TraesCS7A01G529300 chr5D 97.368 38 1 0 3534 3571 14248623 14248586 1.250000e-06 65.8
57 TraesCS7A01G529300 chr5D 97.368 38 1 0 3534 3571 508293242 508293205 1.250000e-06 65.8
58 TraesCS7A01G529300 chr2D 98.000 100 2 0 745 844 30270997 30270898 1.990000e-39 174.0
59 TraesCS7A01G529300 chr1D 98.000 100 2 0 745 844 453300570 453300471 1.990000e-39 174.0
60 TraesCS7A01G529300 chr1D 100.000 35 0 0 3534 3568 63235390 63235424 1.250000e-06 65.8
61 TraesCS7A01G529300 chr4A 97.980 99 2 0 746 844 435431752 435431850 7.170000e-39 172.0
62 TraesCS7A01G529300 chr3D 96.939 98 3 0 747 844 468666522 468666619 1.200000e-36 165.0
63 TraesCS7A01G529300 chr3D 96.000 100 4 0 745 844 538413697 538413796 4.310000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G529300 chr7A 709163609 709168991 5382 False 9941.0 9941 100.0000 1 5383 1 chr7A.!!$F6 5382
1 TraesCS7A01G529300 chr7A 7713000 7715776 2776 False 2298.0 3561 95.3135 745 5383 2 chr7A.!!$F8 4638
2 TraesCS7A01G529300 chr7A 88817601 88818806 1205 False 1895.0 1895 95.0330 1454 2660 1 chr7A.!!$F2 1206
3 TraesCS7A01G529300 chr7A 113433927 113436212 2285 True 1889.5 2641 96.1540 745 4918 2 chr7A.!!$R5 4173
4 TraesCS7A01G529300 chr7A 721878645 721879867 1222 False 1868.0 1868 94.2760 1456 2675 1 chr7A.!!$F7 1219
5 TraesCS7A01G529300 chr7A 85202898 85204103 1205 True 1849.0 1849 94.3660 1456 2660 1 chr7A.!!$R3 1204
6 TraesCS7A01G529300 chr7A 709271786 709273620 1834 True 1418.0 1840 93.6645 1456 3330 2 chr7A.!!$R6 1874
7 TraesCS7A01G529300 chr7A 24605377 24606122 745 True 1334.0 1334 98.9280 1 746 1 chr7A.!!$R2 745
8 TraesCS7A01G529300 chr7A 709156610 709157356 746 False 1334.0 1334 98.9290 1 746 1 chr7A.!!$F5 745
9 TraesCS7A01G529300 chr7A 254865952 254866695 743 False 1330.0 1330 98.9250 1 744 1 chr7A.!!$F4 743
10 TraesCS7A01G529300 chr7A 254858957 254859702 745 False 1328.0 1328 98.7940 1 746 1 chr7A.!!$F3 745
11 TraesCS7A01G529300 chr7A 24598386 24599130 744 True 1327.0 1327 98.7920 1 745 1 chr7A.!!$R1 744
12 TraesCS7A01G529300 chr7A 23750422 23751109 687 False 985.0 985 92.6190 2651 3334 1 chr7A.!!$F1 683
13 TraesCS7A01G529300 chr2A 586905113 586906318 1205 False 1873.0 1873 94.7060 1456 2662 1 chr2A.!!$F1 1206
14 TraesCS7A01G529300 chr2A 100849994 100851198 1204 True 1860.0 1860 94.5270 1456 2660 1 chr2A.!!$R2 1204
15 TraesCS7A01G529300 chr2A 682012684 682014518 1834 False 1475.0 1899 94.8100 1454 3332 2 chr2A.!!$F2 1878
16 TraesCS7A01G529300 chr3A 290419930 290421138 1208 False 1857.0 1857 94.4080 1452 2660 1 chr3A.!!$F1 1208
17 TraesCS7A01G529300 chr3A 583232463 583233664 1201 False 1851.0 1851 94.4440 1456 2660 1 chr3A.!!$F2 1204
18 TraesCS7A01G529300 chr6B 574678424 574679169 745 True 1345.0 1345 99.1960 1 746 1 chr6B.!!$R1 745
19 TraesCS7A01G529300 chr7B 306660171 306660916 745 True 1339.0 1339 99.0620 1 746 1 chr7B.!!$R1 745
20 TraesCS7A01G529300 chr7B 611522197 611522950 753 False 1114.0 1114 93.2890 4290 5047 1 chr7B.!!$F3 757
21 TraesCS7A01G529300 chr7B 713959156 713959838 682 False 952.0 952 91.8840 2651 3334 1 chr7B.!!$F4 683
22 TraesCS7A01G529300 chr7B 155465664 155466337 673 False 928.0 928 91.4120 2651 3334 1 chr7B.!!$F1 683
23 TraesCS7A01G529300 chr1B 163810846 163811592 746 False 1328.0 1328 98.7950 1 746 1 chr1B.!!$F1 745
24 TraesCS7A01G529300 chr2B 744212503 744213254 751 False 1319.0 1319 98.2760 1 754 1 chr2B.!!$F2 753
25 TraesCS7A01G529300 chr2B 157726344 157727022 678 True 963.0 963 92.2740 2651 3331 1 chr2B.!!$R1 680
26 TraesCS7A01G529300 chr2B 43219745 43220571 826 False 830.0 830 85.0240 1980 2795 1 chr2B.!!$F1 815
27 TraesCS7A01G529300 chr1A 579955649 579956334 685 False 1038.0 1038 94.0670 2651 3335 1 chr1A.!!$F3 684
28 TraesCS7A01G529300 chr1A 532411805 532413105 1300 True 1035.0 1035 81.8460 2092 3338 1 chr1A.!!$R2 1246
29 TraesCS7A01G529300 chr5A 384428523 384429120 597 True 983.0 983 96.3210 4585 5182 1 chr5A.!!$R1 597
30 TraesCS7A01G529300 chr5B 545282509 545283180 671 False 933.0 933 91.6540 2651 3331 1 chr5B.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 720 0.584396 CTGTGTGCGCGTAGGAAAAA 59.416 50.000 8.43 0.00 0.00 1.94 F
768 771 0.636101 AAAGCCCAATGCCCATAGGA 59.364 50.000 2.40 0.00 42.71 2.94 F
2643 2691 0.102300 ATCGTCGGCATCGTCATCAA 59.898 50.000 0.00 0.00 37.69 2.57 F
2644 2692 0.800683 TCGTCGGCATCGTCATCAAC 60.801 55.000 0.00 0.00 37.69 3.18 F
3297 3452 1.819632 CCAGGCGGCGCTTTTAGAT 60.820 57.895 32.30 6.25 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 2672 0.102300 TTGATGACGATGCCGACGAT 59.898 50.000 0.00 0.0 39.50 3.73 R
2625 2673 0.800683 GTTGATGACGATGCCGACGA 60.801 55.000 0.00 0.0 39.50 4.20 R
3928 4084 1.140852 CCCAACAAGGCCAGATCGATA 59.859 52.381 5.01 0.0 35.39 2.92 R
4300 4459 1.691195 TTCGAGTCCAAGGCACACCA 61.691 55.000 0.00 0.0 39.06 4.17 R
5254 5414 6.565234 TCGGTAACACAAAACATCAAAACAT 58.435 32.000 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.084018 TGGAAAGGAGAAAGGGGCAT 58.916 50.000 0.00 0.00 0.00 4.40
402 405 1.229927 GCCCCTGCCACCATATTCA 59.770 57.895 0.00 0.00 0.00 2.57
717 720 0.584396 CTGTGTGCGCGTAGGAAAAA 59.416 50.000 8.43 0.00 0.00 1.94
768 771 0.636101 AAAGCCCAATGCCCATAGGA 59.364 50.000 2.40 0.00 42.71 2.94
990 1012 3.519930 GAGGAGCCCGACGAGGAC 61.520 72.222 0.00 0.00 45.00 3.85
1108 1130 2.172483 GAAGCCAGAGTTCCTCGGCA 62.172 60.000 20.80 0.00 45.36 5.69
1202 1224 3.546543 GGATCCGTCGCCCATCCA 61.547 66.667 0.00 0.00 36.78 3.41
1303 1325 2.919856 AGGCAGCGTGGAGACAGT 60.920 61.111 0.00 0.00 44.46 3.55
1354 1376 2.651361 CCTGTGCGTCGTCTCCTT 59.349 61.111 0.00 0.00 0.00 3.36
1367 1389 2.096248 GTCTCCTTCATGACCTCGTCT 58.904 52.381 0.00 0.00 33.15 4.18
1377 1399 4.700365 CCTCGTCTGCGTGCACGA 62.700 66.667 41.19 24.37 42.61 4.35
1680 1707 3.706373 AAGCCGCGTCAGGGACAT 61.706 61.111 4.92 0.00 32.09 3.06
1683 1710 4.082523 CCGCGTCAGGGACATGGT 62.083 66.667 4.92 0.00 32.09 3.55
1738 1765 1.411501 GGGGAATCAATGGCAAGGCTA 60.412 52.381 0.00 0.00 0.00 3.93
1997 2033 2.267006 CTGTCGCCATGGCAGAGT 59.733 61.111 34.93 0.00 42.06 3.24
2295 2331 4.752879 GGCGGCGTACTTCCAGCA 62.753 66.667 9.37 0.00 0.00 4.41
2613 2661 2.582498 GGAGACGCCAATCGGTCG 60.582 66.667 0.00 0.00 43.86 4.79
2614 2662 2.582498 GAGACGCCAATCGGTCGG 60.582 66.667 0.00 0.00 43.86 4.79
2615 2663 4.814294 AGACGCCAATCGGTCGGC 62.814 66.667 0.00 0.00 45.28 5.54
2621 2669 3.554692 CAATCGGTCGGCGCACTC 61.555 66.667 10.83 0.00 0.00 3.51
2634 2682 2.583319 CACTCGCATCGTCGGCAT 60.583 61.111 0.00 0.00 0.00 4.40
2635 2683 2.278857 ACTCGCATCGTCGGCATC 60.279 61.111 0.00 0.00 0.00 3.91
2636 2684 3.390017 CTCGCATCGTCGGCATCG 61.390 66.667 0.00 0.00 37.82 3.84
2637 2685 4.187810 TCGCATCGTCGGCATCGT 62.188 61.111 0.00 0.00 37.69 3.73
2638 2686 3.682315 CGCATCGTCGGCATCGTC 61.682 66.667 0.00 0.00 37.69 4.20
2639 2687 2.582226 GCATCGTCGGCATCGTCA 60.582 61.111 0.00 0.00 37.69 4.35
2640 2688 1.951130 GCATCGTCGGCATCGTCAT 60.951 57.895 0.00 0.00 37.69 3.06
2641 2689 1.880601 GCATCGTCGGCATCGTCATC 61.881 60.000 0.00 0.00 37.69 2.92
2642 2690 0.594796 CATCGTCGGCATCGTCATCA 60.595 55.000 0.00 0.00 37.69 3.07
2643 2691 0.102300 ATCGTCGGCATCGTCATCAA 59.898 50.000 0.00 0.00 37.69 2.57
2644 2692 0.800683 TCGTCGGCATCGTCATCAAC 60.801 55.000 0.00 0.00 37.69 3.18
2653 2701 2.577059 GTCATCAACGAGGGCGGA 59.423 61.111 0.00 0.00 43.17 5.54
3253 3406 2.687566 GGACCGACTCACCCCCAT 60.688 66.667 0.00 0.00 0.00 4.00
3297 3452 1.819632 CCAGGCGGCGCTTTTAGAT 60.820 57.895 32.30 6.25 0.00 1.98
3661 3817 3.904136 AGCTCAAATTGTTCCAGTTCG 57.096 42.857 0.00 0.00 0.00 3.95
3928 4084 2.672996 AATTCCGCTGCCGCACTT 60.673 55.556 0.00 0.00 35.30 3.16
3980 4136 7.454380 TCCCTGGTAAAATTTGAAGACAATCAT 59.546 33.333 0.00 0.00 35.85 2.45
4174 4330 2.884320 TGCTCTTGTGGAGGTACTGTA 58.116 47.619 0.00 0.00 41.55 2.74
4300 4459 1.400494 GGCGTGCGAATTAAGGTTCAT 59.600 47.619 0.00 0.00 0.00 2.57
4317 4476 1.003355 ATGGTGTGCCTTGGACTCG 60.003 57.895 0.00 0.00 35.27 4.18
4318 4477 1.480212 ATGGTGTGCCTTGGACTCGA 61.480 55.000 0.00 0.00 35.27 4.04
4463 4623 5.838531 TTTATTTGTCGGAGGTGTGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
4766 4926 3.100671 ACTTGACTCCTATCTGTCCCAC 58.899 50.000 0.00 0.00 32.67 4.61
5137 5297 1.396301 GCTGTGTGTCTCTTATGCTGC 59.604 52.381 0.00 0.00 0.00 5.25
5230 5390 3.670359 GCAGATGTGCGCATGTTTTTCTA 60.670 43.478 19.33 0.00 40.71 2.10
5276 5436 8.327429 CAAGATGTTTTGATGTTTTGTGTTACC 58.673 33.333 0.00 0.00 0.00 2.85
5360 5520 8.815565 TGGTGGTTGATAACATAACATAACAT 57.184 30.769 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
384 387 0.178953 ATGAATATGGTGGCAGGGGC 60.179 55.000 0.00 0.00 40.13 5.80
402 405 5.961396 AACTCCGCTACAGTATTATCGAT 57.039 39.130 2.16 2.16 0.00 3.59
717 720 8.414778 TGTTGGGTTTCGTAGTAATTTCAAAAT 58.585 29.630 0.00 0.00 0.00 1.82
768 771 2.846827 AGGAAGACGATTGGGGAGAAAT 59.153 45.455 0.00 0.00 0.00 2.17
1202 1224 1.536662 AGAAGGGTCAGGGCGAGTT 60.537 57.895 0.00 0.00 0.00 3.01
1325 1347 2.202395 GCACAGGGCAAAAGCTCCA 61.202 57.895 0.00 0.00 43.97 3.86
1345 1367 1.095600 CGAGGTCATGAAGGAGACGA 58.904 55.000 0.00 0.00 35.63 4.20
1354 1376 1.212751 CACGCAGACGAGGTCATGA 59.787 57.895 0.00 0.00 43.93 3.07
1377 1399 2.759795 GGCCCTCCAGAAAGCAGT 59.240 61.111 0.00 0.00 0.00 4.40
1548 1571 2.124487 CCCAGGCCGGCGAAAATA 60.124 61.111 22.54 0.00 0.00 1.40
1663 1690 3.706373 ATGTCCCTGACGCGGCTT 61.706 61.111 15.80 0.00 34.95 4.35
1680 1707 3.319198 GGGGAAGACGAGCCACCA 61.319 66.667 0.00 0.00 0.00 4.17
1895 1931 2.366570 GAGAGAGAGGGGCTGGGT 59.633 66.667 0.00 0.00 0.00 4.51
1942 1978 2.364842 GAGAGAGAGGGGCTGCCA 60.365 66.667 22.05 0.00 0.00 4.92
1997 2033 3.068691 CTCGTCTCCGGGGAAGCA 61.069 66.667 13.03 0.93 33.95 3.91
2148 2184 3.381136 CGGGTAACGGGGGAACGA 61.381 66.667 0.00 0.00 39.42 3.85
2258 2294 3.876589 AAGCCGCGTGATTGTCGGT 62.877 57.895 4.92 0.00 44.58 4.69
2617 2665 2.580470 GATGCCGACGATGCGAGTG 61.580 63.158 0.00 0.00 0.00 3.51
2618 2666 2.278857 GATGCCGACGATGCGAGT 60.279 61.111 0.00 0.00 0.00 4.18
2619 2667 3.390017 CGATGCCGACGATGCGAG 61.390 66.667 0.00 0.00 38.22 5.03
2620 2668 4.187810 ACGATGCCGACGATGCGA 62.188 61.111 0.00 0.00 39.50 5.10
2621 2669 3.682315 GACGATGCCGACGATGCG 61.682 66.667 0.00 0.00 39.50 4.73
2622 2670 1.880601 GATGACGATGCCGACGATGC 61.881 60.000 0.00 0.00 39.50 3.91
2623 2671 0.594796 TGATGACGATGCCGACGATG 60.595 55.000 0.00 0.00 39.50 3.84
2624 2672 0.102300 TTGATGACGATGCCGACGAT 59.898 50.000 0.00 0.00 39.50 3.73
2625 2673 0.800683 GTTGATGACGATGCCGACGA 60.801 55.000 0.00 0.00 39.50 4.20
2626 2674 1.631072 GTTGATGACGATGCCGACG 59.369 57.895 0.00 0.00 39.50 5.12
2636 2684 1.810030 GTCCGCCCTCGTTGATGAC 60.810 63.158 0.00 0.00 0.00 3.06
2637 2685 2.577059 GTCCGCCCTCGTTGATGA 59.423 61.111 0.00 0.00 0.00 2.92
2638 2686 2.885644 CGTCCGCCCTCGTTGATG 60.886 66.667 0.00 0.00 0.00 3.07
2639 2687 4.143333 CCGTCCGCCCTCGTTGAT 62.143 66.667 0.00 0.00 0.00 2.57
2667 2715 0.800683 GTTGATGACGATGCCGACGA 60.801 55.000 0.00 0.00 39.50 4.20
2990 3086 2.758327 ACCATGGCGGACTAGCGA 60.758 61.111 13.04 0.00 38.63 4.93
3118 3227 1.653609 GGTGAAATTCGCGCATTTTCC 59.346 47.619 17.47 17.43 0.00 3.13
3187 3325 4.563404 AAAAAGGACCGTTCGGCA 57.437 50.000 11.32 0.00 0.00 5.69
3476 3632 7.384115 CAGAAATGCAGACTGAATTTTTCACAT 59.616 33.333 20.30 0.00 35.80 3.21
3686 3842 6.990798 TGGATCATGAAAATTGCAGTAACAA 58.009 32.000 0.00 0.00 0.00 2.83
3928 4084 1.140852 CCCAACAAGGCCAGATCGATA 59.859 52.381 5.01 0.00 35.39 2.92
4300 4459 1.691195 TTCGAGTCCAAGGCACACCA 61.691 55.000 0.00 0.00 39.06 4.17
4672 4832 7.941795 TTTTAAGACGTAGACCTTGAAAGAG 57.058 36.000 0.00 0.00 31.16 2.85
5137 5297 8.514594 TGAACTTCAAGCCAAGATATAAAACAG 58.485 33.333 0.00 0.00 0.00 3.16
5253 5413 6.693545 TCGGTAACACAAAACATCAAAACATC 59.306 34.615 0.00 0.00 0.00 3.06
5254 5414 6.565234 TCGGTAACACAAAACATCAAAACAT 58.435 32.000 0.00 0.00 0.00 2.71
5276 5436 6.681777 AGGACATCAAAAGGAAGAAAAATCG 58.318 36.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.