Multiple sequence alignment - TraesCS7A01G529000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G529000 chr7A 100.000 2420 0 0 1 2420 709128567 709130986 0.000000e+00 4470.0
1 TraesCS7A01G529000 chr7A 90.630 651 53 6 776 1422 709121687 709122333 0.000000e+00 857.0
2 TraesCS7A01G529000 chr7A 82.839 944 124 27 775 1698 709141807 709142732 0.000000e+00 811.0
3 TraesCS7A01G529000 chr7A 91.019 579 45 6 3 580 709120910 709121482 0.000000e+00 774.0
4 TraesCS7A01G529000 chr7A 81.722 941 118 33 776 1697 708913029 708913934 0.000000e+00 736.0
5 TraesCS7A01G529000 chr7A 81.758 899 97 35 776 1650 709028445 709029300 0.000000e+00 689.0
6 TraesCS7A01G529000 chr7A 83.621 116 10 5 1590 1697 709122452 709122566 1.530000e-17 100.0
7 TraesCS7A01G529000 chr7B 90.095 949 67 15 776 1707 709377946 709378884 0.000000e+00 1206.0
8 TraesCS7A01G529000 chr7B 82.147 941 123 29 776 1697 709323045 709323959 0.000000e+00 765.0
9 TraesCS7A01G529000 chr7B 82.254 896 117 24 776 1659 709258404 709259269 0.000000e+00 736.0
10 TraesCS7A01G529000 chr7B 88.845 251 16 7 459 705 709377576 709377818 5.060000e-77 298.0
11 TraesCS7A01G529000 chr7B 100.000 33 0 0 707 739 709377837 709377869 7.220000e-06 62.1
12 TraesCS7A01G529000 chr2A 95.781 711 27 2 1711 2420 694730075 694730783 0.000000e+00 1144.0
13 TraesCS7A01G529000 chr7D 89.423 936 55 13 776 1697 616134195 616135100 0.000000e+00 1140.0
14 TraesCS7A01G529000 chr7D 91.002 589 41 5 2 580 616133439 616134025 0.000000e+00 784.0
15 TraesCS7A01G529000 chr7D 83.168 909 98 34 777 1659 616067955 616068834 0.000000e+00 780.0
16 TraesCS7A01G529000 chr7D 83.190 815 110 18 866 1662 616174059 616174864 0.000000e+00 721.0
17 TraesCS7A01G529000 chr7D 81.787 873 103 31 776 1628 616102925 616103761 0.000000e+00 680.0
18 TraesCS7A01G529000 chr7D 84.496 129 15 4 654 778 616134017 616134144 3.270000e-24 122.0
19 TraesCS7A01G529000 chr1A 95.609 706 29 2 1715 2420 446234350 446233647 0.000000e+00 1131.0
20 TraesCS7A01G529000 chr1A 98.571 70 1 0 1715 1784 444154572 444154641 9.080000e-25 124.0
21 TraesCS7A01G529000 chr4A 96.724 641 20 1 1780 2420 35995309 35995948 0.000000e+00 1066.0
22 TraesCS7A01G529000 chr4A 97.143 70 2 0 1715 1784 35993773 35993842 4.230000e-23 119.0
23 TraesCS7A01G529000 chr3B 96.552 638 20 1 1785 2420 73037508 73036871 0.000000e+00 1055.0
24 TraesCS7A01G529000 chr3B 96.412 641 22 1 1780 2420 452556692 452557331 0.000000e+00 1055.0
25 TraesCS7A01G529000 chr3B 91.667 72 2 2 1713 1784 73039047 73038980 1.980000e-16 97.1
26 TraesCS7A01G529000 chr5A 96.412 641 20 3 1780 2420 705890291 705889654 0.000000e+00 1053.0
27 TraesCS7A01G529000 chr5A 97.143 70 2 0 1715 1784 262462649 262462718 4.230000e-23 119.0
28 TraesCS7A01G529000 chr5A 94.286 70 4 0 1715 1784 705891703 705891634 9.150000e-20 108.0
29 TraesCS7A01G529000 chr4B 96.256 641 22 2 1780 2420 665909085 665908447 0.000000e+00 1050.0
30 TraesCS7A01G529000 chr4B 95.788 641 27 0 1780 2420 629913558 629912918 0.000000e+00 1035.0
31 TraesCS7A01G529000 chr4B 97.143 70 2 0 1715 1784 629927361 629927292 4.230000e-23 119.0
32 TraesCS7A01G529000 chr2B 96.100 641 24 1 1780 2420 553886430 553885791 0.000000e+00 1044.0
33 TraesCS7A01G529000 chr3D 90.207 531 29 3 894 1422 422409369 422409878 0.000000e+00 671.0
34 TraesCS7A01G529000 chr5D 97.143 70 2 0 1715 1784 120937515 120937446 4.230000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G529000 chr7A 709128567 709130986 2419 False 4470.000000 4470 100.000000 1 2420 1 chr7A.!!$F3 2419
1 TraesCS7A01G529000 chr7A 709141807 709142732 925 False 811.000000 811 82.839000 775 1698 1 chr7A.!!$F4 923
2 TraesCS7A01G529000 chr7A 708913029 708913934 905 False 736.000000 736 81.722000 776 1697 1 chr7A.!!$F1 921
3 TraesCS7A01G529000 chr7A 709028445 709029300 855 False 689.000000 689 81.758000 776 1650 1 chr7A.!!$F2 874
4 TraesCS7A01G529000 chr7A 709120910 709122566 1656 False 577.000000 857 88.423333 3 1697 3 chr7A.!!$F5 1694
5 TraesCS7A01G529000 chr7B 709323045 709323959 914 False 765.000000 765 82.147000 776 1697 1 chr7B.!!$F2 921
6 TraesCS7A01G529000 chr7B 709258404 709259269 865 False 736.000000 736 82.254000 776 1659 1 chr7B.!!$F1 883
7 TraesCS7A01G529000 chr7B 709377576 709378884 1308 False 522.033333 1206 92.980000 459 1707 3 chr7B.!!$F3 1248
8 TraesCS7A01G529000 chr2A 694730075 694730783 708 False 1144.000000 1144 95.781000 1711 2420 1 chr2A.!!$F1 709
9 TraesCS7A01G529000 chr7D 616067955 616068834 879 False 780.000000 780 83.168000 777 1659 1 chr7D.!!$F1 882
10 TraesCS7A01G529000 chr7D 616174059 616174864 805 False 721.000000 721 83.190000 866 1662 1 chr7D.!!$F3 796
11 TraesCS7A01G529000 chr7D 616133439 616135100 1661 False 682.000000 1140 88.307000 2 1697 3 chr7D.!!$F4 1695
12 TraesCS7A01G529000 chr7D 616102925 616103761 836 False 680.000000 680 81.787000 776 1628 1 chr7D.!!$F2 852
13 TraesCS7A01G529000 chr1A 446233647 446234350 703 True 1131.000000 1131 95.609000 1715 2420 1 chr1A.!!$R1 705
14 TraesCS7A01G529000 chr4A 35993773 35995948 2175 False 592.500000 1066 96.933500 1715 2420 2 chr4A.!!$F1 705
15 TraesCS7A01G529000 chr3B 452556692 452557331 639 False 1055.000000 1055 96.412000 1780 2420 1 chr3B.!!$F1 640
16 TraesCS7A01G529000 chr3B 73036871 73039047 2176 True 576.050000 1055 94.109500 1713 2420 2 chr3B.!!$R1 707
17 TraesCS7A01G529000 chr5A 705889654 705891703 2049 True 580.500000 1053 95.349000 1715 2420 2 chr5A.!!$R1 705
18 TraesCS7A01G529000 chr4B 665908447 665909085 638 True 1050.000000 1050 96.256000 1780 2420 1 chr4B.!!$R3 640
19 TraesCS7A01G529000 chr4B 629912918 629913558 640 True 1035.000000 1035 95.788000 1780 2420 1 chr4B.!!$R1 640
20 TraesCS7A01G529000 chr2B 553885791 553886430 639 True 1044.000000 1044 96.100000 1780 2420 1 chr2B.!!$R1 640
21 TraesCS7A01G529000 chr3D 422409369 422409878 509 False 671.000000 671 90.207000 894 1422 1 chr3D.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 374 0.038251 TCGCCACCATCTATCGATGC 60.038 55.0 8.54 0.0 44.56 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1992 0.5312 GCACGGGCACTCTACTAGTT 59.469 55.0 3.77 0.0 40.72 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.003160 TCATATTGAAACCACAGTCCACAG 58.997 41.667 0.00 0.00 0.00 3.66
73 74 5.180117 CAGGCACCTGTATATGAATAAGTGC 59.820 44.000 8.61 0.00 46.52 4.40
74 75 5.072329 AGGCACCTGTATATGAATAAGTGCT 59.928 40.000 11.10 0.00 46.46 4.40
95 96 2.710377 TGCGGCAATAGAACATCTGTT 58.290 42.857 0.00 0.00 41.64 3.16
288 292 9.667107 AAGAGATACGAAATTCAAATGTTCCTA 57.333 29.630 0.00 0.00 0.00 2.94
305 309 5.482526 TGTTCCTAATAGCCACAGACACTAA 59.517 40.000 0.00 0.00 0.00 2.24
322 326 4.258543 CACTAAAATAACAAGCTCCCCGA 58.741 43.478 0.00 0.00 0.00 5.14
364 374 0.038251 TCGCCACCATCTATCGATGC 60.038 55.000 8.54 0.00 44.56 3.91
370 380 0.388520 CCATCTATCGATGCCGCGAA 60.389 55.000 8.23 0.00 44.56 4.70
389 399 4.745649 CGAAACTAGTTAAGGGAGACTGG 58.254 47.826 8.92 0.00 0.00 4.00
390 400 4.381718 CGAAACTAGTTAAGGGAGACTGGG 60.382 50.000 8.92 0.00 0.00 4.45
396 406 4.038633 AGTTAAGGGAGACTGGGATAACC 58.961 47.826 0.00 0.00 40.81 2.85
442 452 8.707449 AGACAGGGATAACAATAACGGTAAATA 58.293 33.333 0.00 0.00 0.00 1.40
456 466 2.616842 GGTAAATATGCCGTCCAAGTGG 59.383 50.000 0.00 0.00 0.00 4.00
529 539 7.532546 TGTTATGTCACGACGATTTGAAAATTC 59.467 33.333 0.00 0.00 0.00 2.17
533 543 5.856455 GTCACGACGATTTGAAAATTCCAAT 59.144 36.000 0.00 0.00 0.00 3.16
535 545 6.580791 TCACGACGATTTGAAAATTCCAATTC 59.419 34.615 0.00 0.00 0.00 2.17
536 546 6.362016 CACGACGATTTGAAAATTCCAATTCA 59.638 34.615 0.00 2.64 33.93 2.57
554 565 1.737236 TCAATATGTCAGCACGCCAAC 59.263 47.619 0.00 0.00 0.00 3.77
562 573 1.135915 TCAGCACGCCAACAAAACAAT 59.864 42.857 0.00 0.00 0.00 2.71
619 630 7.606073 TGGCTTGAAGCTTTATTTATTTTTCCC 59.394 33.333 17.59 0.00 41.99 3.97
621 632 8.998377 GCTTGAAGCTTTATTTATTTTTCCCAA 58.002 29.630 10.44 0.00 38.45 4.12
631 645 9.717942 TTATTTATTTTTCCCAACCACATGAAG 57.282 29.630 0.00 0.00 0.00 3.02
633 647 5.885449 ATTTTTCCCAACCACATGAAGAA 57.115 34.783 0.00 0.00 0.00 2.52
636 650 4.935352 TTCCCAACCACATGAAGAAAAG 57.065 40.909 0.00 0.00 0.00 2.27
641 655 5.534654 CCCAACCACATGAAGAAAAGTAGAA 59.465 40.000 0.00 0.00 0.00 2.10
644 658 7.416213 CCAACCACATGAAGAAAAGTAGAACAA 60.416 37.037 0.00 0.00 0.00 2.83
646 660 6.601613 ACCACATGAAGAAAAGTAGAACAACA 59.398 34.615 0.00 0.00 0.00 3.33
647 661 7.134815 CCACATGAAGAAAAGTAGAACAACAG 58.865 38.462 0.00 0.00 0.00 3.16
648 662 7.201732 CCACATGAAGAAAAGTAGAACAACAGT 60.202 37.037 0.00 0.00 0.00 3.55
649 663 7.641411 CACATGAAGAAAAGTAGAACAACAGTG 59.359 37.037 0.00 0.00 0.00 3.66
650 664 6.119144 TGAAGAAAAGTAGAACAACAGTGC 57.881 37.500 0.00 0.00 0.00 4.40
651 665 5.065988 TGAAGAAAAGTAGAACAACAGTGCC 59.934 40.000 0.00 0.00 0.00 5.01
652 666 3.560068 AGAAAAGTAGAACAACAGTGCCG 59.440 43.478 0.00 0.00 0.00 5.69
664 678 4.617875 GTGCCGTCCACAGCTAAT 57.382 55.556 0.00 0.00 44.06 1.73
687 701 4.991687 TGTTTATACGTGACTTGTCATGCA 59.008 37.500 19.32 9.96 0.00 3.96
705 736 1.265095 GCAATGCCATGTGGACTATCG 59.735 52.381 2.55 0.00 37.39 2.92
762 825 0.679321 CCTTGCTGGGGAAGAGAAGC 60.679 60.000 0.51 0.00 36.18 3.86
836 973 5.279206 GCTTGGATGGAGATAAGATCGAGAA 60.279 44.000 0.00 0.00 0.00 2.87
880 1020 3.391382 CACTCCGTCCTCACCCCC 61.391 72.222 0.00 0.00 0.00 5.40
881 1021 3.923645 ACTCCGTCCTCACCCCCA 61.924 66.667 0.00 0.00 0.00 4.96
882 1022 3.077556 CTCCGTCCTCACCCCCAG 61.078 72.222 0.00 0.00 0.00 4.45
883 1023 3.907027 CTCCGTCCTCACCCCCAGT 62.907 68.421 0.00 0.00 0.00 4.00
891 1044 3.849951 CACCCCCAGTCCGATCCG 61.850 72.222 0.00 0.00 0.00 4.18
1537 1798 4.021925 GACTGCCTTGGACCGCCT 62.022 66.667 0.00 0.00 34.31 5.52
1549 1810 1.134401 GGACCGCCTGATCAGAATTGA 60.134 52.381 24.62 0.00 37.81 2.57
1640 1906 1.501741 CGTCCGGTCAGCAAAATGG 59.498 57.895 0.00 0.00 0.00 3.16
1819 3579 7.524698 GCATGGGTAGTTCTGAAATTTTGGTAA 60.525 37.037 0.00 0.00 0.00 2.85
1894 3654 3.638627 ACAGTGAGTGAGATGTGTCTTCA 59.361 43.478 0.00 0.00 33.97 3.02
1917 3677 4.887655 AGGGAACAACTAACACTCTTTTGG 59.112 41.667 0.00 0.00 0.00 3.28
2094 3856 2.683859 CCTCGTCGGTGTCGCACTA 61.684 63.158 9.31 0.00 34.40 2.74
2328 4090 0.034574 ACTGCAGTGTGGTTTGGTCA 60.035 50.000 20.97 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.308825 AGCACTTATTCATATACAGGTGCC 58.691 41.667 10.43 0.00 46.46 5.01
73 74 2.679837 ACAGATGTTCTATTGCCGCAAG 59.320 45.455 12.16 0.00 0.00 4.01
74 75 2.710377 ACAGATGTTCTATTGCCGCAA 58.290 42.857 8.55 8.55 0.00 4.85
95 96 3.333804 TGAGCTAATTGATTGCGTGTCA 58.666 40.909 0.00 0.00 0.00 3.58
262 266 8.567285 AGGAACATTTGAATTTCGTATCTCTT 57.433 30.769 0.00 0.00 0.00 2.85
278 282 5.648092 GTGTCTGTGGCTATTAGGAACATTT 59.352 40.000 0.00 0.00 0.00 2.32
288 292 8.630054 TTGTTATTTTAGTGTCTGTGGCTATT 57.370 30.769 0.00 0.00 0.00 1.73
292 296 5.048713 AGCTTGTTATTTTAGTGTCTGTGGC 60.049 40.000 0.00 0.00 0.00 5.01
305 309 3.756963 GACTTTCGGGGAGCTTGTTATTT 59.243 43.478 0.00 0.00 0.00 1.40
322 326 6.094048 CGATATTCTTTCATGGTGTGGACTTT 59.906 38.462 0.00 0.00 0.00 2.66
364 374 2.165030 TCTCCCTTAACTAGTTTCGCGG 59.835 50.000 14.49 8.66 0.00 6.46
370 380 4.415224 TCCCAGTCTCCCTTAACTAGTT 57.585 45.455 13.68 13.68 0.00 2.24
408 418 8.451748 GTTATTGTTATCCCTGTCTCACTTTTC 58.548 37.037 0.00 0.00 0.00 2.29
410 420 6.594159 CGTTATTGTTATCCCTGTCTCACTTT 59.406 38.462 0.00 0.00 0.00 2.66
414 424 4.468510 ACCGTTATTGTTATCCCTGTCTCA 59.531 41.667 0.00 0.00 0.00 3.27
420 430 7.392393 GGCATATTTACCGTTATTGTTATCCCT 59.608 37.037 0.00 0.00 0.00 4.20
442 452 2.933287 TCCCCACTTGGACGGCAT 60.933 61.111 0.00 0.00 37.39 4.40
456 466 2.639065 TGAATATCGCCAACTTGTCCC 58.361 47.619 0.00 0.00 0.00 4.46
529 539 3.365832 GCGTGCTGACATATTGAATTGG 58.634 45.455 0.00 0.00 0.00 3.16
533 543 2.106477 TGGCGTGCTGACATATTGAA 57.894 45.000 0.00 0.00 0.00 2.69
535 545 1.468127 TGTTGGCGTGCTGACATATTG 59.532 47.619 0.00 0.00 33.63 1.90
536 546 1.819928 TGTTGGCGTGCTGACATATT 58.180 45.000 0.00 0.00 33.63 1.28
554 565 7.820648 AGCTGTGGATAGTTCTAATTGTTTTG 58.179 34.615 0.00 0.00 0.00 2.44
562 573 5.009110 CAGATCGAGCTGTGGATAGTTCTAA 59.991 44.000 22.28 0.00 0.00 2.10
616 627 3.909732 ACTTTTCTTCATGTGGTTGGGA 58.090 40.909 0.00 0.00 0.00 4.37
619 630 7.026631 TGTTCTACTTTTCTTCATGTGGTTG 57.973 36.000 0.00 0.00 0.00 3.77
621 632 6.601613 TGTTGTTCTACTTTTCTTCATGTGGT 59.398 34.615 0.00 0.00 0.00 4.16
631 645 3.311596 ACGGCACTGTTGTTCTACTTTTC 59.688 43.478 0.00 0.00 0.00 2.29
633 647 2.870411 GACGGCACTGTTGTTCTACTTT 59.130 45.455 0.00 0.00 0.00 2.66
636 650 1.145803 GGACGGCACTGTTGTTCTAC 58.854 55.000 0.00 0.00 0.00 2.59
641 655 1.523711 CTGTGGACGGCACTGTTGT 60.524 57.895 0.00 0.00 0.00 3.32
650 664 4.208460 CGTATAAACATTAGCTGTGGACGG 59.792 45.833 0.00 0.00 38.39 4.79
651 665 4.802039 ACGTATAAACATTAGCTGTGGACG 59.198 41.667 0.00 5.08 38.39 4.79
652 666 5.808540 TCACGTATAAACATTAGCTGTGGAC 59.191 40.000 0.00 0.00 38.39 4.02
664 678 4.991687 TGCATGACAAGTCACGTATAAACA 59.008 37.500 4.84 0.00 43.11 2.83
740 771 1.676967 CTCTTCCCCAGCAAGGCAC 60.677 63.158 0.00 0.00 35.39 5.01
741 772 1.426251 TTCTCTTCCCCAGCAAGGCA 61.426 55.000 0.00 0.00 35.39 4.75
742 773 0.679321 CTTCTCTTCCCCAGCAAGGC 60.679 60.000 0.00 0.00 35.39 4.35
748 811 1.077858 GCCAGCTTCTCTTCCCCAG 60.078 63.158 0.00 0.00 0.00 4.45
880 1020 3.056821 TGGATTTATAGCGGATCGGACTG 60.057 47.826 4.16 0.00 0.00 3.51
881 1021 3.056749 GTGGATTTATAGCGGATCGGACT 60.057 47.826 4.16 3.77 0.00 3.85
882 1022 3.251571 GTGGATTTATAGCGGATCGGAC 58.748 50.000 4.16 0.00 0.00 4.79
883 1023 2.232941 GGTGGATTTATAGCGGATCGGA 59.767 50.000 4.16 0.00 0.00 4.55
891 1044 1.145803 GACGCCGGTGGATTTATAGC 58.854 55.000 21.14 0.00 0.00 2.97
1245 1425 2.355986 CCGGATGAACCCCTCGTCA 61.356 63.158 0.00 0.00 41.29 4.35
1495 1712 2.691674 GATCTTCTCTCCAGCGGGCG 62.692 65.000 0.00 0.00 0.00 6.13
1496 1713 1.068921 GATCTTCTCTCCAGCGGGC 59.931 63.158 0.00 0.00 0.00 6.13
1497 1714 1.745264 GGATCTTCTCTCCAGCGGG 59.255 63.158 0.00 0.00 32.72 6.13
1498 1715 1.745264 GGGATCTTCTCTCCAGCGG 59.255 63.158 0.00 0.00 34.24 5.52
1537 1798 3.055891 TCTGAGCCGTTCAATTCTGATCA 60.056 43.478 0.00 0.00 34.81 2.92
1549 1810 2.283529 ACACCCGATCTGAGCCGTT 61.284 57.895 0.00 0.00 0.00 4.44
1576 1838 1.185618 TTGCCGTGTACAGAGCTCCT 61.186 55.000 10.93 0.00 0.00 3.69
1707 1986 4.465305 ACGGGCACTCTACTAGTTATTGTT 59.535 41.667 0.00 0.00 35.76 2.83
1708 1987 4.021916 ACGGGCACTCTACTAGTTATTGT 58.978 43.478 0.00 0.00 35.76 2.71
1709 1988 4.360563 CACGGGCACTCTACTAGTTATTG 58.639 47.826 0.00 0.00 35.76 1.90
1710 1989 3.181478 GCACGGGCACTCTACTAGTTATT 60.181 47.826 3.77 0.00 40.72 1.40
1711 1990 2.361438 GCACGGGCACTCTACTAGTTAT 59.639 50.000 3.77 0.00 40.72 1.89
1712 1991 1.747355 GCACGGGCACTCTACTAGTTA 59.253 52.381 3.77 0.00 40.72 2.24
1713 1992 0.531200 GCACGGGCACTCTACTAGTT 59.469 55.000 3.77 0.00 40.72 2.24
1858 3618 7.889073 TCTCACTCACTGTAATTAGGAACTAGT 59.111 37.037 0.00 0.00 44.25 2.57
1894 3654 4.887655 CCAAAAGAGTGTTAGTTGTTCCCT 59.112 41.667 0.00 0.00 0.00 4.20
1917 3677 6.325919 TGGATTGTGTCACTTCCATTTAAC 57.674 37.500 18.68 0.00 33.40 2.01
1975 3737 1.256812 GGGTGCAGTTTGCCTGTATT 58.743 50.000 0.00 0.00 44.23 1.89
2094 3856 1.227089 GCACGACGAGAGGCATCAT 60.227 57.895 0.00 0.00 41.50 2.45
2328 4090 3.074412 CTCTGGCGTTTTGTTGAGGTAT 58.926 45.455 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.