AutoCloner

Multiple sequence alignment - TraesCS7A01G528800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G528800	chr7A	100.000	2805	0	0	1	2805	709027593	709030397	0.000000e+00	5180.0
1	TraesCS7A01G528800	chr7A	87.686	942	76	15	789	1708	708912968	708913891	0.000000e+00	1061.0
2	TraesCS7A01G528800	chr7A	82.609	920	109	26	824	1708	709141781	709142684	0.000000e+00	765.0
3	TraesCS7A01G528800	chr7A	81.497	935	128	26	1810	2732	708920817	708921718	0.000000e+00	726.0
4	TraesCS7A01G528800	chr7A	82.751	858	85	32	795	1612	709121621	709122455	0.000000e+00	706.0
5	TraesCS7A01G528800	chr7A	82.933	832	88	29	1	795	708918374	708919188	0.000000e+00	701.0
6	TraesCS7A01G528800	chr7A	81.758	899	97	37	853	1708	709129342	709130216	0.000000e+00	689.0
7	TraesCS7A01G528800	chr7A	82.143	840	93	30	1	796	708912074	708912900	0.000000e+00	667.0
8	TraesCS7A01G528800	chr7A	86.067	445	50	4	1104	1536	708919299	708919743	4.230000e-128	468.0
9	TraesCS7A01G528800	chr7A	86.911	382	50	0	1185	1566	708988116	708988497	2.000000e-116	429.0
10	TraesCS7A01G528800	chr7A	80.645	465	56	22	2272	2733	708965807	708966240	2.080000e-86	329.0
11	TraesCS7A01G528800	chr7A	80.172	464	60	21	2272	2733	709017500	709017933	4.510000e-83	318.0
12	TraesCS7A01G528800	chr7A	82.178	303	38	9	306	606	708917560	708917848	2.160000e-61	246.0
13	TraesCS7A01G528800	chr7A	90.769	65	5	1	2734	2798	709123624	709123687	4.980000e-13	86.1
14	TraesCS7A01G528800	chr7D	92.961	966	48	9	1778	2734	616103903	616104857	0.000000e+00	1389.0
15	TraesCS7A01G528800	chr7D	89.782	871	73	9	854	1708	616067955	616068825	0.000000e+00	1101.0
16	TraesCS7A01G528800	chr7D	85.942	939	84	14	799	1708	616055312	616056231	0.000000e+00	959.0
17	TraesCS7A01G528800	chr7D	85.963	919	76	19	796	1686	616102868	616103761	0.000000e+00	933.0
18	TraesCS7A01G528800	chr7D	81.731	936	120	33	803	1708	616173938	616174852	0.000000e+00	734.0
19	TraesCS7A01G528800	chr7D	86.852	540	51	7	1184	1708	616075967	616076501	1.120000e-163	586.0
20	TraesCS7A01G528800	chr7D	78.571	966	113	41	795	1708	616134135	616135058	4.080000e-153	551.0
21	TraesCS7A01G528800	chr7D	79.856	834	88	34	1	795	616101997	616102789	1.140000e-148	536.0
22	TraesCS7A01G528800	chr7D	81.034	464	53	20	2272	2733	616077046	616077476	1.240000e-88	337.0
23	TraesCS7A01G528800	chr7D	82.796	279	17	19	521	795	616067585	616067836	1.310000e-53	220.0
24	TraesCS7A01G528800	chr7D	89.091	165	14	4	86	247	616101830	616101993	4.740000e-48	202.0
25	TraesCS7A01G528800	chr7D	97.222	72	2	0	2734	2805	616104886	616104957	3.790000e-24	122.0
26	TraesCS7A01G528800	chr7D	81.119	143	18	4	157	297	616166457	616166592	3.820000e-19	106.0
27	TraesCS7A01G528800	chr7B	87.166	935	79	20	795	1708	709258346	709259260	0.000000e+00	1024.0
28	TraesCS7A01G528800	chr7B	84.916	948	91	16	795	1708	709322987	709323916	0.000000e+00	911.0
29	TraesCS7A01G528800	chr7B	90.646	588	49	5	2150	2734	709368908	709369492	0.000000e+00	776.0
30	TraesCS7A01G528800	chr7B	79.247	1036	123	53	1798	2805	709259395	709260366	3.050000e-179	638.0
31	TraesCS7A01G528800	chr7B	85.253	434	52	8	298	724	709322239	709322667	1.190000e-118	436.0
32	TraesCS7A01G528800	chr7B	84.890	364	45	10	354	714	709315730	709316086	2.660000e-95	359.0
33	TraesCS7A01G528800	chr7B	81.752	411	40	22	417	798	709257875	709258279	7.540000e-81	311.0
34	TraesCS7A01G528800	chr7B	88.750	160	17	1	1	159	709257707	709257866	7.930000e-46	195.0
35	TraesCS7A01G528800	chr7B	88.372	86	7	3	615	700	709354145	709354227	1.780000e-17	100.0
36	TraesCS7A01G528800	chr7B	88.710	62	4	1	735	796	709322851	709322909	3.880000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G528800	chr7A	709027593	709030397	2804	False	5180.000000	5180	100.000000	1	2805	1	chr7A.!!$F4	2804
1	TraesCS7A01G528800	chr7A	709141781	709142684	903	False	765.000000	765	82.609000	824	1708	1	chr7A.!!$F6	884
2	TraesCS7A01G528800	chr7A	709129342	709130216	874	False	689.000000	689	81.758000	853	1708	1	chr7A.!!$F5	855
3	TraesCS7A01G528800	chr7A	708912074	708921718	9644	False	644.833333	1061	83.750667	1	2732	6	chr7A.!!$F7	2731
4	TraesCS7A01G528800	chr7A	709121621	709123687	2066	False	396.050000	706	86.760000	795	2798	2	chr7A.!!$F8	2003
5	TraesCS7A01G528800	chr7D	616055312	616056231	919	False	959.000000	959	85.942000	799	1708	1	chr7D.!!$F1	909
6	TraesCS7A01G528800	chr7D	616173938	616174852	914	False	734.000000	734	81.731000	803	1708	1	chr7D.!!$F4	905
7	TraesCS7A01G528800	chr7D	616067585	616068825	1240	False	660.500000	1101	86.289000	521	1708	2	chr7D.!!$F5	1187
8	TraesCS7A01G528800	chr7D	616101830	616104957	3127	False	636.400000	1389	89.018600	1	2805	5	chr7D.!!$F7	2804
9	TraesCS7A01G528800	chr7D	616134135	616135058	923	False	551.000000	551	78.571000	795	1708	1	chr7D.!!$F2	913
10	TraesCS7A01G528800	chr7D	616075967	616077476	1509	False	461.500000	586	83.943000	1184	2733	2	chr7D.!!$F6	1549
11	TraesCS7A01G528800	chr7B	709368908	709369492	584	False	776.000000	776	90.646000	2150	2734	1	chr7B.!!$F3	584
12	TraesCS7A01G528800	chr7B	709257707	709260366	2659	False	542.000000	1024	84.228750	1	2805	4	chr7B.!!$F4	2804
13	TraesCS7A01G528800	chr7B	709322239	709323916	1677	False	473.366667	911	86.293000	298	1708	3	chr7B.!!$F5	1410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
952	1562	0.037303	AATGCCACCACAGACTCCTG	59.963	55.0	0.0	0.0	45.76	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2061	9728	0.167908	CACCACACACACACACACAC	59.832	55.0	0.0	0.0	0.0	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	198	7.639113	ACCATCTAGAACAGAAACAAAAACA	57.361	32.000	0.00	0.00	36.67	2.83
50	219	4.180057	CACTGTGTAGAAAGATCAGAGGC	58.820	47.826	0.00	0.00	0.00	4.70
51	220	3.119316	ACTGTGTAGAAAGATCAGAGGCG	60.119	47.826	0.00	0.00	0.00	5.52
70	239	5.445069	AGGCGCATCTATCATCTAGACTAT	58.555	41.667	10.83	0.00	0.00	2.12
84	253	9.230122	TCATCTAGACTATATGCAGAAGAAGAG	57.770	37.037	0.00	0.00	0.00	2.85
101	272	6.458232	AGAAGAGCAGATACGTACAAAGAT	57.542	37.500	0.00	0.00	0.00	2.40
116	288	7.167468	ACGTACAAAGATTTGCAGAAAAATCAC	59.833	33.333	10.62	0.69	45.20	3.06
130	309	0.320771	AATCACAGGTCACGGCAGAC	60.321	55.000	0.00	0.00	37.80	3.51
151	330	0.392863	ATTGCCTGCAGATGCGTACA	60.393	50.000	17.39	0.00	45.83	2.90
159	338	1.524355	GCAGATGCGTACACAGCTATG	59.476	52.381	0.61	0.00	33.75	2.23
174	353	1.405526	GCTATGACTTTCAGGCGGACA	60.406	52.381	0.00	0.00	0.00	4.02
179	358	2.955660	TGACTTTCAGGCGGACAATTTT	59.044	40.909	0.00	0.00	0.00	1.82
184	363	0.038343	CAGGCGGACAATTTTGTGGG	60.038	55.000	0.00	0.00	42.43	4.61
188	367	0.312416	CGGACAATTTTGTGGGCGAA	59.688	50.000	0.00	0.00	42.43	4.70
232	411	7.712797	ACCACAAACACTAAAGAATAACAAGG	58.287	34.615	0.00	0.00	0.00	3.61
292	472	4.098501	ACACAATCGACTAGCTCATCATCA	59.901	41.667	0.00	0.00	0.00	3.07
311	491	6.115446	TCATCATCGCAAGGAAAAATCTACT	58.885	36.000	0.00	0.00	38.47	2.57
333	513	2.043752	CTCCATGCATGTGGGGCA	60.044	61.111	24.58	0.00	46.66	5.36
340	521	1.180456	TGCATGTGGGGCAACAAGAG	61.180	55.000	0.00	0.00	38.54	2.85
392	573	4.201920	CGACGGTATGAACAGAGAGATTCA	60.202	45.833	0.00	0.00	39.09	2.57
394	575	6.037786	ACGGTATGAACAGAGAGATTCAAA	57.962	37.500	0.00	0.00	38.29	2.69
441	629	7.724061	ACACAAATGGTAGAATAACAAGTTCCT	59.276	33.333	0.00	0.00	44.46	3.36
442	630	8.237267	CACAAATGGTAGAATAACAAGTTCCTC	58.763	37.037	0.00	0.00	44.46	3.71
457	645	2.225382	TCCTCGAAGTCCACACCATA	57.775	50.000	0.00	0.00	0.00	2.74
476	664	9.125026	ACACCATAAAAGAAGAATATCATCACC	57.875	33.333	0.00	0.00	0.00	4.02
499	687	1.442857	GTCAGCGTCACGAGACCTG	60.443	63.158	18.44	18.44	41.87	4.00
561	754	2.962421	GGGGAATCCAAACACAAAGTCA	59.038	45.455	0.09	0.00	35.00	3.41
660	896	9.985318	TTTCAAAATTCAAATTCAACATGTCAC	57.015	25.926	0.00	0.00	0.00	3.67
661	897	7.839493	TCAAAATTCAAATTCAACATGTCACG	58.161	30.769	0.00	0.00	0.00	4.35
662	898	5.827568	AATTCAAATTCAACATGTCACGC	57.172	34.783	0.00	0.00	0.00	5.34
664	900	2.620585	TCAAATTCAACATGTCACGCCA	59.379	40.909	0.00	0.00	0.00	5.69
665	901	3.067320	TCAAATTCAACATGTCACGCCAA	59.933	39.130	0.00	0.00	0.00	4.52
666	902	2.995466	ATTCAACATGTCACGCCAAG	57.005	45.000	0.00	0.00	0.00	3.61
668	904	1.960417	TCAACATGTCACGCCAAGAA	58.040	45.000	0.00	0.00	0.00	2.52
669	905	1.872952	TCAACATGTCACGCCAAGAAG	59.127	47.619	0.00	0.00	0.00	2.85
676	912	2.872245	TGTCACGCCAAGAAGAGAAAAG	59.128	45.455	0.00	0.00	0.00	2.27
722	977	9.624373	AAGATCTGTCATTTTGAGCTATACAAT	57.376	29.630	0.00	0.00	0.00	2.71
726	981	8.886719	TCTGTCATTTTGAGCTATACAATCTTG	58.113	33.333	0.00	0.00	0.00	3.02
797	1376	4.332428	TCAGATGCTACATGACATCCAG	57.668	45.455	18.13	13.63	43.01	3.86
931	1540	0.752009	AGATCGAGAGCTGGGCGTAA	60.752	55.000	0.00	0.00	0.00	3.18
934	1543	0.963856	TCGAGAGCTGGGCGTAAGAA	60.964	55.000	0.00	0.00	43.02	2.52
952	1562	0.037303	AATGCCACCACAGACTCCTG	59.963	55.000	0.00	0.00	45.76	3.86
954	1564	3.150949	CCACCACAGACTCCTGCA	58.849	61.111	0.00	0.00	44.16	4.41
1071	1728	4.442375	TGAAGAACAGAGATCGGAGAAC	57.558	45.455	0.00	0.00	43.58	3.01
1260	1926	2.688666	AGGGGCGAGATCAAGGCA	60.689	61.111	14.14	0.00	34.32	4.75
1338	2004	2.124151	GGGTTCATCCGGCTGCAT	60.124	61.111	0.00	0.00	37.00	3.96
1473	2156	2.675423	CGGAGGACGTGGGAGACA	60.675	66.667	0.00	0.00	37.93	3.41
1612	2359	1.065102	CGTACGATCAGATTGGACGGT	59.935	52.381	23.51	0.00	45.29	4.83
1613	2360	2.460918	GTACGATCAGATTGGACGGTG	58.539	52.381	0.00	0.00	0.00	4.94
1730	2557	6.472686	ACTGTAGCTCTCTTTGGTAATAGG	57.527	41.667	0.00	0.00	0.00	2.57
1733	2560	6.432581	TGTAGCTCTCTTTGGTAATAGGAGA	58.567	40.000	0.00	0.00	0.00	3.71
1761	2594	1.219664	CCTCCATGTCGGGCGTTTA	59.780	57.895	0.00	0.00	34.36	2.01
1784	8864	2.375174	TCCTCCAAAGTTGCCACAGTAT	59.625	45.455	0.00	0.00	0.00	2.12
1793	8873	6.861065	AAGTTGCCACAGTATAATAATCCG	57.139	37.500	0.00	0.00	0.00	4.18
1886	9549	7.147949	CCGGATAGGTAGAAAAAGAAGACTGTA	60.148	40.741	0.00	0.00	34.51	2.74
1953	9616	3.473625	TGTCAAGACGACTACTCTCACA	58.526	45.455	0.00	0.00	45.60	3.58
1954	9617	3.498777	TGTCAAGACGACTACTCTCACAG	59.501	47.826	0.00	0.00	45.60	3.66
1955	9618	3.499157	GTCAAGACGACTACTCTCACAGT	59.501	47.826	0.00	0.00	41.81	3.55
2002	9665	6.729187	AGCGAAATCTAAGTTATTTGGCATC	58.271	36.000	15.93	0.00	45.17	3.91
2041	9708	7.088272	TCTTAAGATTCGTCGTTGAATGAAGA	58.912	34.615	0.00	0.00	38.65	2.87
2060	9727	7.624360	TGAAGACTCTAAACATTTTGTGTGT	57.376	32.000	0.00	0.00	41.14	3.72
2061	9728	7.471721	TGAAGACTCTAAACATTTTGTGTGTG	58.528	34.615	0.00	0.00	41.14	3.82
2062	9729	7.120579	TGAAGACTCTAAACATTTTGTGTGTGT	59.879	33.333	0.00	0.00	41.14	3.72
2063	9730	6.785191	AGACTCTAAACATTTTGTGTGTGTG	58.215	36.000	0.00	0.00	41.14	3.82
2064	9731	6.374333	AGACTCTAAACATTTTGTGTGTGTGT	59.626	34.615	0.00	0.00	41.14	3.72
2065	9732	6.321717	ACTCTAAACATTTTGTGTGTGTGTG	58.678	36.000	0.00	0.00	41.14	3.82
2066	9733	6.072175	ACTCTAAACATTTTGTGTGTGTGTGT	60.072	34.615	0.00	0.00	41.14	3.72
2067	9734	6.089476	TCTAAACATTTTGTGTGTGTGTGTG	58.911	36.000	0.00	0.00	41.14	3.82
2084	9771	2.031560	GTGTGTGTGTGTGTGGTGTATG	59.968	50.000	0.00	0.00	0.00	2.39
2200	9891	9.859427	TTTCATTATTGGAGTCATTTTCATGTC	57.141	29.630	0.00	0.00	0.00	3.06
2322	10018	3.671716	AGTACCGAGGTGGAAACAATTC	58.328	45.455	4.80	0.00	46.06	2.17
2518	10215	3.008049	AGTTTCCTCCGCAGAGTAAACAT	59.992	43.478	17.33	3.61	46.16	2.71
2585	10289	8.885693	ATTCTTATTTTGCTCCTCTTTTACCT	57.114	30.769	0.00	0.00	0.00	3.08
2629	10334	4.457810	CGATTAGGCAAGCAATACAATCG	58.542	43.478	0.00	0.00	37.85	3.34
2672	10381	4.571580	ACCGTTTGATACAGAAAAACACGA	59.428	37.500	0.00	0.00	34.23	4.35
2761	10505	1.659035	ATCCCCAAATCTGCCCCTCC	61.659	60.000	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	198	3.119316	CGCCTCTGATCTTTCTACACAGT	60.119	47.826	0.00	0.00	0.00	3.55
50	219	7.869800	TGCATATAGTCTAGATGATAGATGCG	58.130	38.462	23.00	5.00	31.08	4.73
51	220	9.065798	TCTGCATATAGTCTAGATGATAGATGC	57.934	37.037	22.44	22.44	29.09	3.91
70	239	4.339530	ACGTATCTGCTCTTCTTCTGCATA	59.660	41.667	0.00	0.00	36.07	3.14
84	253	5.063438	TCTGCAAATCTTTGTACGTATCTGC	59.937	40.000	0.00	0.00	40.24	4.26
101	272	4.681744	GTGACCTGTGATTTTTCTGCAAA	58.318	39.130	0.00	0.00	0.00	3.68
130	309	1.096967	TACGCATCTGCAGGCAATGG	61.097	55.000	15.13	7.23	42.21	3.16
151	330	1.406069	CCGCCTGAAAGTCATAGCTGT	60.406	52.381	0.00	0.00	0.00	4.40
159	338	3.243401	ACAAAATTGTCCGCCTGAAAGTC	60.243	43.478	0.00	0.00	36.50	3.01
174	353	1.698506	TGGACTTCGCCCACAAAATT	58.301	45.000	0.00	0.00	0.00	1.82
184	363	1.079405	TGAATCCGGTGGACTTCGC	60.079	57.895	0.00	0.00	32.98	4.70
188	367	2.434702	GGTTATCTGAATCCGGTGGACT	59.565	50.000	0.00	0.00	32.98	3.85
228	407	0.681175	CTTGGACTTTTGGGGCCTTG	59.319	55.000	0.84	0.00	0.00	3.61
232	411	0.686789	ATTGCTTGGACTTTTGGGGC	59.313	50.000	0.00	0.00	0.00	5.80
260	439	5.535030	AGCTAGTCGATTGTGTGGTCATATA	59.465	40.000	0.00	0.00	0.00	0.86
263	443	2.497675	AGCTAGTCGATTGTGTGGTCAT	59.502	45.455	0.00	0.00	0.00	3.06
279	459	2.994578	CCTTGCGATGATGATGAGCTAG	59.005	50.000	0.00	0.00	0.00	3.42
292	472	4.396166	CCACAGTAGATTTTTCCTTGCGAT	59.604	41.667	0.00	0.00	0.00	4.58
311	491	1.679641	CCACATGCATGGAGCCACA	60.680	57.895	29.41	0.00	43.02	4.17
363	544	1.654105	CTGTTCATACCGTCGACTTGC	59.346	52.381	14.70	0.00	0.00	4.01
392	573	7.038659	TGTGGAACATTCGAATTTTGAAGTTT	58.961	30.769	13.98	1.27	45.67	2.66
394	575	6.142818	TGTGGAACATTCGAATTTTGAAGT	57.857	33.333	13.98	2.65	45.67	3.01
441	629	4.610605	TCTTTTATGGTGTGGACTTCGA	57.389	40.909	0.00	0.00	0.00	3.71
442	630	4.994852	TCTTCTTTTATGGTGTGGACTTCG	59.005	41.667	0.00	0.00	0.00	3.79
476	664	2.112522	GTCTCGTGACGCTGACATATG	58.887	52.381	19.87	0.00	33.27	1.78
499	687	1.659098	CGTTATTGTTCTCACCGAGCC	59.341	52.381	0.00	0.00	0.00	4.70
506	698	7.762615	ACGATAGATTTTCCGTTATTGTTCTCA	59.237	33.333	0.00	0.00	41.38	3.27
623	859	3.826157	TGAATTTTGAAATCTCGGTGGCT	59.174	39.130	0.00	0.00	0.00	4.75
660	896	6.487689	ACTATTTCTTTTCTCTTCTTGGCG	57.512	37.500	0.00	0.00	0.00	5.69
661	897	8.554835	AGTACTATTTCTTTTCTCTTCTTGGC	57.445	34.615	0.00	0.00	0.00	4.52
669	905	9.036671	GCTGTGGATAGTACTATTTCTTTTCTC	57.963	37.037	16.46	1.72	0.00	2.87
676	912	8.364142	AGATCTTGCTGTGGATAGTACTATTTC	58.636	37.037	16.46	12.18	0.00	2.17
722	977	5.038651	TGGCATGACATGACATATCAAGA	57.961	39.130	20.37	0.00	45.06	3.02
797	1376	2.399611	CTTTCGCGCCACCGATTC	59.600	61.111	0.00	0.00	37.06	2.52
931	1540	0.326264	GGAGTCTGTGGTGGCATTCT	59.674	55.000	0.00	0.00	0.00	2.40
934	1543	1.681666	CAGGAGTCTGTGGTGGCAT	59.318	57.895	0.00	0.00	36.30	4.40
952	1562	3.308473	GGATTTATAGGGGGTGAGGATGC	60.308	52.174	0.00	0.00	0.00	3.91
954	1564	3.916989	GTGGATTTATAGGGGGTGAGGAT	59.083	47.826	0.00	0.00	0.00	3.24
1071	1728	0.997226	CGAACGTAGCCATCGATCGG	60.997	60.000	16.41	1.97	44.92	4.18
1110	1767	4.996434	GGGCGAGCCGATCCCATG	62.996	72.222	8.14	0.00	39.82	3.66
1290	1956	4.988598	CCAACAGCAGCGTCCGGT	62.989	66.667	0.00	0.00	0.00	5.28
1304	1970	4.776322	CCTCATCGCCACCGCCAA	62.776	66.667	0.00	0.00	0.00	4.52
1311	1977	3.739922	ATGAACCCCTCATCGCCA	58.260	55.556	0.00	0.00	41.13	5.69
1317	1983	2.285368	AGCCGGATGAACCCCTCA	60.285	61.111	5.05	0.00	38.81	3.86
1449	2132	2.579201	CACGTCCTCCGCCAGAAT	59.421	61.111	0.00	0.00	41.42	2.40
1612	2359	1.672030	CTGCGTCACCCAATCTGCA	60.672	57.895	0.00	0.00	0.00	4.41
1613	2360	1.375908	TCTGCGTCACCCAATCTGC	60.376	57.895	0.00	0.00	0.00	4.26
1650	2400	4.518970	AGATCTTTAAAAACGCCTCTTGCA	59.481	37.500	0.00	0.00	41.33	4.08
1708	2476	6.547880	TCTCCTATTACCAAAGAGAGCTACAG	59.452	42.308	0.00	0.00	0.00	2.74
1709	2477	6.432581	TCTCCTATTACCAAAGAGAGCTACA	58.567	40.000	0.00	0.00	0.00	2.74
1761	2594	2.242043	CTGTGGCAACTTTGGAGGAAT	58.758	47.619	0.00	0.00	37.61	3.01
1784	8864	6.479972	AGGAATGACTGACACGGATTATTA	57.520	37.500	0.00	0.00	0.00	0.98
1793	8873	3.686726	CAGGCTTAAGGAATGACTGACAC	59.313	47.826	4.29	0.00	0.00	3.67
1857	9520	7.038516	AGTCTTCTTTTTCTACCTATCCGGAAA	60.039	37.037	9.01	0.00	36.31	3.13
1886	9549	2.628657	GCCTCCACGACTATATGTCCTT	59.371	50.000	0.00	0.00	42.49	3.36
1900	9563	1.188863	TACCCTTACTTCGCCTCCAC	58.811	55.000	0.00	0.00	0.00	4.02
1901	9564	1.941377	TTACCCTTACTTCGCCTCCA	58.059	50.000	0.00	0.00	0.00	3.86
1902	9565	3.203716	CATTTACCCTTACTTCGCCTCC	58.796	50.000	0.00	0.00	0.00	4.30
2013	9680	6.255670	TCATTCAACGACGAATCTTAAGATGG	59.744	38.462	18.61	15.23	33.27	3.51
2041	9708	6.072175	ACACACACACACAAAATGTTTAGAGT	60.072	34.615	0.00	0.00	40.64	3.24
2060	9727	0.250510	ACCACACACACACACACACA	60.251	50.000	0.00	0.00	0.00	3.72
2061	9728	0.167908	CACCACACACACACACACAC	59.832	55.000	0.00	0.00	0.00	3.82
2062	9729	0.250510	ACACCACACACACACACACA	60.251	50.000	0.00	0.00	0.00	3.72
2063	9730	1.728068	TACACCACACACACACACAC	58.272	50.000	0.00	0.00	0.00	3.82
2064	9731	2.284190	CATACACCACACACACACACA	58.716	47.619	0.00	0.00	0.00	3.72
2065	9732	2.285083	ACATACACCACACACACACAC	58.715	47.619	0.00	0.00	0.00	3.82
2066	9733	2.093447	TGACATACACCACACACACACA	60.093	45.455	0.00	0.00	0.00	3.72
2067	9734	2.286833	GTGACATACACCACACACACAC	59.713	50.000	0.00	0.00	43.05	3.82
2124	9814	5.279506	GCTCCGAATGGGAATATAAGTCAGA	60.280	44.000	0.00	0.00	46.61	3.27
2200	9891	7.493320	TGCAAACGTATATACCCTAAAACTGAG	59.507	37.037	7.30	0.00	0.00	3.35
2218	9909	1.200716	CAATGCCTCTCATGCAAACGT	59.799	47.619	0.00	0.00	42.92	3.99
2322	10018	2.357009	GGCTCCATGATGTTAGCAACAG	59.643	50.000	15.88	0.00	45.95	3.16
2385	10081	7.834068	AACATCAACTATATATGGCACGATC	57.166	36.000	0.00	0.00	0.00	3.69
2417	10113	3.316029	TGTCTGAAGAAAACACATGCTGG	59.684	43.478	0.00	0.00	0.00	4.85
2571	10275	2.223852	CGCCTAGAGGTAAAAGAGGAGC	60.224	54.545	0.00	0.00	37.57	4.70
2585	10289	4.748102	CGCATAGAAAATAAACCGCCTAGA	59.252	41.667	0.00	0.00	0.00	2.43
2629	10334	1.847818	TCGTATGACTGTAATGGCGC	58.152	50.000	0.00	0.00	0.00	6.53
2672	10381	7.129457	TGTAAATGAGAGCATTGATCTAGGT	57.871	36.000	4.06	0.00	43.71	3.08
2761	10505	4.582973	AGGAATTTCCAGAGGAAGAAGG	57.417	45.455	17.57	0.00	43.06	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.