Multiple sequence alignment - TraesCS7A01G528600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G528600 chr7A 100.000 7736 0 0 1 7736 708875503 708883238 0.000000e+00 14286.0
1 TraesCS7A01G528600 chr7A 98.768 1542 18 1 1 1541 708859916 708861457 0.000000e+00 2741.0
2 TraesCS7A01G528600 chr7A 91.753 291 23 1 105 394 671628852 671628562 3.360000e-108 403.0
3 TraesCS7A01G528600 chr7A 96.552 116 2 2 1 115 76282118 76282004 2.850000e-44 191.0
4 TraesCS7A01G528600 chr7A 100.000 35 0 0 7701 7735 709025784 709025818 1.800000e-06 65.8
5 TraesCS7A01G528600 chr7B 88.647 1885 132 45 1572 3408 709195247 709197097 0.000000e+00 2220.0
6 TraesCS7A01G528600 chr7B 92.725 1457 86 11 3558 5001 709197110 709198559 0.000000e+00 2085.0
7 TraesCS7A01G528600 chr7B 94.454 1226 53 9 5781 6997 709198650 709199869 0.000000e+00 1873.0
8 TraesCS7A01G528600 chr7B 81.485 1118 122 37 3719 4788 709254035 709255115 0.000000e+00 839.0
9 TraesCS7A01G528600 chr7B 85.884 758 90 7 2541 3291 709250654 709251401 0.000000e+00 791.0
10 TraesCS7A01G528600 chr7B 84.495 574 39 21 996 1530 709194685 709195247 8.900000e-144 521.0
11 TraesCS7A01G528600 chr7B 91.877 357 27 1 7381 7735 709200077 709200433 1.500000e-136 497.0
12 TraesCS7A01G528600 chr7B 79.259 405 25 30 588 961 709194313 709194689 2.170000e-55 228.0
13 TraesCS7A01G528600 chr7B 89.474 114 11 1 5838 5950 709255602 709255715 8.090000e-30 143.0
14 TraesCS7A01G528600 chr7B 98.148 54 1 0 5733 5786 709198568 709198621 2.300000e-15 95.3
15 TraesCS7A01G528600 chr7B 91.228 57 3 2 7327 7381 709199889 709199945 8.320000e-10 76.8
16 TraesCS7A01G528600 chr7D 94.072 1417 69 13 2481 3892 616037419 616038825 0.000000e+00 2137.0
17 TraesCS7A01G528600 chr7D 84.107 1724 127 58 439 2124 616034987 616036601 0.000000e+00 1530.0
18 TraesCS7A01G528600 chr7D 86.464 1411 127 40 5781 7154 616040106 616041489 0.000000e+00 1489.0
19 TraesCS7A01G528600 chr7D 90.679 1105 71 13 3945 5025 616038939 616040035 0.000000e+00 1441.0
20 TraesCS7A01G528600 chr7D 87.831 189 16 2 5021 5209 2865409 2865228 1.690000e-51 215.0
21 TraesCS7A01G528600 chr7D 86.726 113 11 1 2556 2664 616106842 616106954 1.050000e-23 122.0
22 TraesCS7A01G528600 chr7D 98.214 56 1 0 5731 5786 616040022 616040077 1.780000e-16 99.0
23 TraesCS7A01G528600 chr7D 100.000 35 0 0 7701 7735 616098226 616098260 1.800000e-06 65.8
24 TraesCS7A01G528600 chr5B 95.332 707 25 3 5022 5728 559450189 559449491 0.000000e+00 1116.0
25 TraesCS7A01G528600 chr6A 84.123 781 100 14 3882 4642 176375331 176374555 0.000000e+00 734.0
26 TraesCS7A01G528600 chr6A 88.066 243 23 4 3645 3885 176375650 176375412 4.570000e-72 283.0
27 TraesCS7A01G528600 chr6A 96.552 116 2 2 1 115 49566017 49566131 2.850000e-44 191.0
28 TraesCS7A01G528600 chr2A 86.491 570 74 2 3882 4449 767057416 767057984 2.370000e-174 623.0
29 TraesCS7A01G528600 chr2A 91.096 292 22 3 105 394 131686558 131686847 7.280000e-105 392.0
30 TraesCS7A01G528600 chr2A 88.976 254 22 4 3634 3885 767057072 767057321 7.540000e-80 309.0
31 TraesCS7A01G528600 chr2A 96.552 116 2 2 1 115 567784268 567784382 2.850000e-44 191.0
32 TraesCS7A01G528600 chr4D 82.663 721 75 25 5022 5728 338437011 338436327 1.860000e-165 593.0
33 TraesCS7A01G528600 chr4D 92.222 90 7 0 5639 5728 338421371 338421282 2.270000e-25 128.0
34 TraesCS7A01G528600 chrUn 83.365 523 61 13 4137 4642 59091738 59091225 1.970000e-125 460.0
35 TraesCS7A01G528600 chrUn 90.576 191 11 2 5025 5215 280767884 280768067 6.000000e-61 246.0
36 TraesCS7A01G528600 chrUn 96.078 102 4 0 3784 3885 389079219 389079320 4.800000e-37 167.0
37 TraesCS7A01G528600 chr3A 91.837 294 23 1 105 397 641807587 641807294 7.230000e-110 409.0
38 TraesCS7A01G528600 chr3A 89.369 301 29 3 105 402 555441994 555441694 7.330000e-100 375.0
39 TraesCS7A01G528600 chr1A 91.809 293 23 1 105 396 282692550 282692258 2.600000e-109 407.0
40 TraesCS7A01G528600 chr1A 90.444 293 27 1 105 396 548889594 548889886 1.220000e-102 385.0
41 TraesCS7A01G528600 chr1A 96.552 116 2 2 1 115 32710075 32710189 2.850000e-44 191.0
42 TraesCS7A01G528600 chr5A 89.667 300 27 4 105 401 673142571 673142869 5.670000e-101 379.0
43 TraesCS7A01G528600 chr5A 89.562 297 30 1 105 400 529993493 529993197 7.330000e-100 375.0
44 TraesCS7A01G528600 chr5A 96.552 116 3 1 1 115 450885858 450885743 2.850000e-44 191.0
45 TraesCS7A01G528600 chr5A 96.552 116 2 2 1 115 651171043 651170929 2.850000e-44 191.0
46 TraesCS7A01G528600 chr5A 92.308 130 8 2 1 129 290012625 290012753 4.770000e-42 183.0
47 TraesCS7A01G528600 chr2D 86.707 331 33 6 5400 5720 563295520 563295191 2.650000e-94 357.0
48 TraesCS7A01G528600 chr2D 86.176 340 31 7 5023 5361 643893453 643893129 3.430000e-93 353.0
49 TraesCS7A01G528600 chr3D 95.041 121 4 2 1 120 38975984 38975865 1.020000e-43 189.0
50 TraesCS7A01G528600 chr2B 80.882 272 23 10 5422 5687 673934354 673934106 3.690000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G528600 chr7A 708875503 708883238 7735 False 14286.0000 14286 100.000000 1 7736 1 chr7A.!!$F2 7735
1 TraesCS7A01G528600 chr7A 708859916 708861457 1541 False 2741.0000 2741 98.768000 1 1541 1 chr7A.!!$F1 1540
2 TraesCS7A01G528600 chr7B 709194313 709200433 6120 False 949.5125 2220 90.104125 588 7735 8 chr7B.!!$F1 7147
3 TraesCS7A01G528600 chr7B 709250654 709255715 5061 False 591.0000 839 85.614333 2541 5950 3 chr7B.!!$F2 3409
4 TraesCS7A01G528600 chr7D 616034987 616041489 6502 False 1339.2000 2137 90.707200 439 7154 5 chr7D.!!$F3 6715
5 TraesCS7A01G528600 chr5B 559449491 559450189 698 True 1116.0000 1116 95.332000 5022 5728 1 chr5B.!!$R1 706
6 TraesCS7A01G528600 chr6A 176374555 176375650 1095 True 508.5000 734 86.094500 3645 4642 2 chr6A.!!$R1 997
7 TraesCS7A01G528600 chr2A 767057072 767057984 912 False 466.0000 623 87.733500 3634 4449 2 chr2A.!!$F3 815
8 TraesCS7A01G528600 chr4D 338436327 338437011 684 True 593.0000 593 82.663000 5022 5728 1 chr4D.!!$R2 706
9 TraesCS7A01G528600 chrUn 59091225 59091738 513 True 460.0000 460 83.365000 4137 4642 1 chrUn.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 383 1.450312 GACAGGATGGGTCGCTTGG 60.450 63.158 0.00 0.0 43.62 3.61 F
1629 1732 1.027357 ATGAATCAATCAGCGTGCCC 58.973 50.000 0.00 0.0 42.53 5.36 F
2177 2310 0.035317 CCACTGTTCTGGTAGCAGCA 59.965 55.000 17.20 9.3 39.90 4.41 F
2526 3162 0.108186 TCGTTCGTACCGGAGAGCTA 60.108 55.000 9.46 0.0 0.00 3.32 F
3197 3839 1.066002 CTGGTGTGCAGGTCAACAAAG 59.934 52.381 0.00 0.0 31.94 2.77 F
4238 7292 3.317993 GCAAGGTCAGAACAAAAGGCTAA 59.682 43.478 0.00 0.0 0.00 3.09 F
5353 8633 0.466739 AACCCCGGGTTGTTCTTCAC 60.467 55.000 21.79 0.0 45.07 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1843 0.037326 GAGGAATCCGTGTGTGAGCA 60.037 55.000 0.00 0.00 0.00 4.26 R
3197 3839 0.251519 GATCCTGGGGCATGGAATCC 60.252 60.000 0.00 0.00 35.81 3.01 R
3555 4763 1.065199 TCATGGTAAAGCTCCTGCAGG 60.065 52.381 27.87 27.87 42.74 4.85 R
4238 7292 2.838360 TGCCAGACCACATGCACT 59.162 55.556 0.00 0.00 0.00 4.40 R
4832 7940 2.010145 ACAGATCCACGTGCACATAC 57.990 50.000 18.64 1.70 0.00 2.39 R
5384 8664 0.443869 CTTGGTCGATTGAAGGCACG 59.556 55.000 0.00 0.00 0.00 5.34 R
6992 10339 0.034896 GGCGAAGTGGAGAAGGTGAA 59.965 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 167 2.202783 GCATTGATGTTGGCGGGC 60.203 61.111 0.00 0.00 0.00 6.13
351 353 4.030366 CGTTTGTCCGTTTTACCTCAAAC 58.970 43.478 0.00 0.00 40.25 2.93
381 383 1.450312 GACAGGATGGGTCGCTTGG 60.450 63.158 0.00 0.00 43.62 3.61
427 429 1.459592 CGACTTGGAGCAAGGTTTACG 59.540 52.381 0.00 0.00 44.81 3.18
1101 1160 1.970114 CCACCAGCAGAACCAGCAG 60.970 63.158 0.00 0.00 0.00 4.24
1342 1410 2.125912 CGGCAGAGACCTTCGGTG 60.126 66.667 0.00 0.00 35.25 4.94
1580 1679 1.294659 CTTGGTTCCGCACAGAGCTC 61.295 60.000 5.27 5.27 42.61 4.09
1595 1694 3.583806 AGAGCTCTTCTGACGAACATTG 58.416 45.455 11.45 0.00 33.93 2.82
1608 1707 2.101249 CGAACATTGGGATTGGGGAATG 59.899 50.000 0.00 0.00 32.99 2.67
1612 1711 3.712733 ACATTGGGATTGGGGAATGAATG 59.287 43.478 0.00 0.00 31.53 2.67
1622 1725 6.474140 TTGGGGAATGAATGAATCAATCAG 57.526 37.500 7.13 0.00 42.53 2.90
1623 1726 4.342951 TGGGGAATGAATGAATCAATCAGC 59.657 41.667 7.13 1.99 42.53 4.26
1624 1727 4.543692 GGGAATGAATGAATCAATCAGCG 58.456 43.478 7.13 0.00 42.53 5.18
1625 1728 4.037208 GGGAATGAATGAATCAATCAGCGT 59.963 41.667 7.13 0.00 42.53 5.07
1628 1731 2.097954 TGAATGAATCAATCAGCGTGCC 59.902 45.455 0.00 0.00 42.53 5.01
1629 1732 1.027357 ATGAATCAATCAGCGTGCCC 58.973 50.000 0.00 0.00 42.53 5.36
1685 1791 1.202557 AGAGTCCAAACGTAACGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
1727 1843 2.818751 TTTTCACACACTGGAGGGTT 57.181 45.000 0.00 0.00 0.00 4.11
1730 1846 1.149174 CACACACTGGAGGGTTGCT 59.851 57.895 0.00 0.00 0.00 3.91
1734 1850 1.344953 ACACTGGAGGGTTGCTCACA 61.345 55.000 0.00 0.00 0.00 3.58
1735 1851 0.886490 CACTGGAGGGTTGCTCACAC 60.886 60.000 0.00 0.00 0.00 3.82
1737 1853 0.886490 CTGGAGGGTTGCTCACACAC 60.886 60.000 0.00 0.00 0.00 3.82
1750 1866 2.232452 CTCACACACGGATTCCTCTTCT 59.768 50.000 0.30 0.00 0.00 2.85
1752 1868 2.738846 CACACACGGATTCCTCTTCTTG 59.261 50.000 0.30 0.00 0.00 3.02
1756 1872 1.208293 ACGGATTCCTCTTCTTGAGCC 59.792 52.381 0.30 0.00 41.35 4.70
1811 1936 7.773690 TGTCAGCACATAGTATAAGTCTACTCA 59.226 37.037 0.00 0.00 33.96 3.41
1864 1989 2.275547 CTTCCATCTTTGCGGCTGCC 62.276 60.000 16.57 9.11 41.78 4.85
1903 2031 2.977580 TGCTATCCATGGAGCTTGAGAT 59.022 45.455 21.33 2.81 39.54 2.75
1943 2072 2.092838 GCTTCTCTTGTGGAAATCGTCG 59.907 50.000 0.00 0.00 0.00 5.12
1963 2092 1.877443 GAACTTGGCCGCTTTGACTTA 59.123 47.619 0.00 0.00 0.00 2.24
2000 2129 1.002888 CTGGATGGTGAAGCACAGACT 59.997 52.381 0.00 0.00 35.86 3.24
2008 2137 1.152030 AAGCACAGACTGGGGGAGA 60.152 57.895 6.88 0.00 0.00 3.71
2087 2216 9.440773 TTGGATAAGCAGTGAATGATATATGAC 57.559 33.333 0.00 0.00 0.00 3.06
2088 2217 8.596293 TGGATAAGCAGTGAATGATATATGACA 58.404 33.333 0.00 0.00 0.00 3.58
2089 2218 9.440773 GGATAAGCAGTGAATGATATATGACAA 57.559 33.333 0.00 0.00 0.00 3.18
2092 2221 7.592439 AGCAGTGAATGATATATGACAATCG 57.408 36.000 0.00 0.00 0.00 3.34
2093 2222 7.381323 AGCAGTGAATGATATATGACAATCGA 58.619 34.615 0.00 0.00 0.00 3.59
2102 2231 9.770097 ATGATATATGACAATCGAAACTCAAGT 57.230 29.630 0.00 0.00 0.00 3.16
2125 2258 5.793030 ATCTATCTGGTTAAGGGAGTTCG 57.207 43.478 0.00 0.00 0.00 3.95
2126 2259 4.863548 TCTATCTGGTTAAGGGAGTTCGA 58.136 43.478 0.00 0.00 0.00 3.71
2128 2261 2.600790 TCTGGTTAAGGGAGTTCGACA 58.399 47.619 0.00 0.00 0.00 4.35
2135 2268 1.372623 GGGAGTTCGACACCGTCAC 60.373 63.158 0.00 0.00 37.05 3.67
2142 2275 0.816421 TCGACACCGTCACTCAGTCA 60.816 55.000 0.00 0.00 37.05 3.41
2175 2308 1.895798 TCTCCACTGTTCTGGTAGCAG 59.104 52.381 15.93 15.93 41.87 4.24
2176 2309 0.321671 TCCACTGTTCTGGTAGCAGC 59.678 55.000 17.20 4.88 39.90 5.25
2177 2310 0.035317 CCACTGTTCTGGTAGCAGCA 59.965 55.000 17.20 9.30 39.90 4.41
2187 2320 1.065926 TGGTAGCAGCATCTGTTCCAG 60.066 52.381 0.00 0.00 33.43 3.86
2192 2330 1.030488 CAGCATCTGTTCCAGGGCTG 61.030 60.000 17.75 17.75 45.51 4.85
2281 2428 5.924869 TGGAATTGCCTTAAAGCAGTAGCG 61.925 45.833 0.00 0.00 45.13 4.26
2310 2457 6.513066 GCTTCAGATTGGAAAGATCATACTGC 60.513 42.308 0.00 0.00 0.00 4.40
2356 2503 6.266558 ACCTCATAGTTTTGCAACCACATAAA 59.733 34.615 0.00 0.00 32.70 1.40
2379 2526 2.026822 AGGTCCAGCATAGTCAGTTTGG 60.027 50.000 0.00 0.00 0.00 3.28
2382 2529 2.027192 TCCAGCATAGTCAGTTTGGGAC 60.027 50.000 0.00 0.00 35.50 4.46
2422 2571 9.817809 TCTGTTAGTTTCCTTATATACAAGCTG 57.182 33.333 0.00 0.00 0.00 4.24
2432 2581 6.258727 CCTTATATACAAGCTGACACCTGTTG 59.741 42.308 0.00 0.00 0.00 3.33
2472 2623 4.476479 ACAATATGGCTCTCCTTTCTTCCT 59.524 41.667 0.00 0.00 0.00 3.36
2476 2627 4.993705 TGGCTCTCCTTTCTTCCTTTTA 57.006 40.909 0.00 0.00 0.00 1.52
2491 2645 7.773149 TCTTCCTTTTACTCTGTGCTATACTC 58.227 38.462 0.00 0.00 0.00 2.59
2513 3149 6.417044 ACTCTATATTTCCAATTCGTCGTTCG 59.583 38.462 0.00 0.00 41.41 3.95
2518 3154 0.636733 CCAATTCGTCGTTCGTACCG 59.363 55.000 0.00 0.00 40.80 4.02
2526 3162 0.108186 TCGTTCGTACCGGAGAGCTA 60.108 55.000 9.46 0.00 0.00 3.32
2553 3189 4.724279 ATATCGGTAGCCTTTTCCCATT 57.276 40.909 0.00 0.00 0.00 3.16
2630 3266 2.044252 AGCATTGCTGGCCTGGAG 60.044 61.111 11.09 0.00 37.57 3.86
2909 3545 3.259064 TGCTGCTATCGACAAAAGGTAC 58.741 45.455 0.00 0.00 0.00 3.34
2980 3616 3.851838 GCTGTAAACGTTGTTGATGTGGG 60.852 47.826 0.00 0.00 0.00 4.61
3139 3781 9.509855 GCATTTCATTTTGACATATTTACCGTA 57.490 29.630 0.00 0.00 0.00 4.02
3197 3839 1.066002 CTGGTGTGCAGGTCAACAAAG 59.934 52.381 0.00 0.00 31.94 2.77
3488 4696 4.383118 GCTGGCTAGAACTATGGTTTGAGA 60.383 45.833 0.00 0.00 35.58 3.27
3555 4763 9.139174 GCTTATTCTGATGAGCTAGTTCTATTC 57.861 37.037 8.15 3.55 40.63 1.75
3710 4918 7.624360 AGAACTTCAGTAGATGTAGAGAGTG 57.376 40.000 0.00 0.00 32.42 3.51
3711 4919 7.172342 AGAACTTCAGTAGATGTAGAGAGTGT 58.828 38.462 0.00 0.00 32.42 3.55
3713 4921 8.865420 AACTTCAGTAGATGTAGAGAGTGTTA 57.135 34.615 0.00 0.00 32.42 2.41
3714 4922 9.469097 AACTTCAGTAGATGTAGAGAGTGTTAT 57.531 33.333 0.00 0.00 32.42 1.89
3715 4923 9.469097 ACTTCAGTAGATGTAGAGAGTGTTATT 57.531 33.333 0.00 0.00 31.08 1.40
3864 6723 3.519510 TCCAGACCTTTGGAGGATGTAAG 59.480 47.826 0.00 0.00 46.74 2.34
3979 7031 6.467047 CAGTTTTTGATTAATGCGCTACTCAG 59.533 38.462 9.73 0.00 0.00 3.35
4040 7094 7.990886 TGTTTTGTGTTATCCTATATCCAGGTC 59.009 37.037 0.00 0.00 36.99 3.85
4168 7222 8.950210 CACAAAAGTGTATCTGACAATATCCTT 58.050 33.333 0.00 0.00 40.66 3.36
4238 7292 3.317993 GCAAGGTCAGAACAAAAGGCTAA 59.682 43.478 0.00 0.00 0.00 3.09
4342 7396 6.489675 CGATGTTTATCATGCTTGCTTAGTT 58.510 36.000 0.00 0.00 36.83 2.24
4566 7659 7.808381 AGAAGTTCATATGTTATCGGTATCACG 59.192 37.037 5.50 0.00 0.00 4.35
4621 7722 7.976135 AGCCTTCTATTTGTGATATGTCATC 57.024 36.000 0.00 0.00 36.60 2.92
4624 7725 7.148672 GCCTTCTATTTGTGATATGTCATCGAG 60.149 40.741 0.00 0.00 36.60 4.04
4653 7761 8.826765 AGAAACAAGAATAGGGTTCTCATTCTA 58.173 33.333 0.00 0.00 37.90 2.10
4794 7902 6.710744 GTCAAAACTGAAGATGAGGAGGTTTA 59.289 38.462 0.00 0.00 0.00 2.01
4806 7914 3.421844 AGGAGGTTTATCTTGCACAACC 58.578 45.455 0.00 0.00 39.28 3.77
4812 7920 4.038642 GGTTTATCTTGCACAACCCTGAAA 59.961 41.667 0.00 0.00 33.77 2.69
4814 7922 5.452078 TTATCTTGCACAACCCTGAAAAG 57.548 39.130 0.00 0.00 0.00 2.27
4817 7925 4.469657 TCTTGCACAACCCTGAAAAGTAT 58.530 39.130 0.00 0.00 0.00 2.12
4818 7926 4.892934 TCTTGCACAACCCTGAAAAGTATT 59.107 37.500 0.00 0.00 0.00 1.89
4819 7927 5.362430 TCTTGCACAACCCTGAAAAGTATTT 59.638 36.000 0.00 0.00 42.41 1.40
4868 8142 8.592998 GTGGATCTGTAGTAGAAATGTAAAACG 58.407 37.037 0.00 0.00 39.30 3.60
4872 8146 8.121305 TCTGTAGTAGAAATGTAAAACGGGTA 57.879 34.615 0.00 0.00 30.84 3.69
4988 8266 2.033747 CAGCGTAACTGCAACATATCCG 60.034 50.000 0.00 0.00 40.19 4.18
4992 8270 3.863424 CGTAACTGCAACATATCCGAAGT 59.137 43.478 0.00 0.00 0.00 3.01
5007 8285 2.100252 CCGAAGTAGCAAATAGACGGGA 59.900 50.000 0.00 0.00 36.27 5.14
5008 8286 3.243771 CCGAAGTAGCAAATAGACGGGAT 60.244 47.826 0.00 0.00 36.27 3.85
5009 8287 4.022589 CCGAAGTAGCAAATAGACGGGATA 60.023 45.833 0.00 0.00 36.27 2.59
5010 8288 4.916249 CGAAGTAGCAAATAGACGGGATAC 59.084 45.833 0.00 0.00 0.00 2.24
5011 8289 5.278364 CGAAGTAGCAAATAGACGGGATACT 60.278 44.000 0.00 0.00 0.00 2.12
5012 8290 6.481434 AAGTAGCAAATAGACGGGATACTT 57.519 37.500 0.00 0.00 0.00 2.24
5013 8291 7.521099 CGAAGTAGCAAATAGACGGGATACTTA 60.521 40.741 0.00 0.00 33.60 2.24
5014 8292 7.216973 AGTAGCAAATAGACGGGATACTTAG 57.783 40.000 0.00 0.00 0.00 2.18
5015 8293 4.884247 AGCAAATAGACGGGATACTTAGC 58.116 43.478 0.00 0.00 0.00 3.09
5016 8294 4.344102 AGCAAATAGACGGGATACTTAGCA 59.656 41.667 0.00 0.00 0.00 3.49
5017 8295 4.686554 GCAAATAGACGGGATACTTAGCAG 59.313 45.833 0.00 0.00 0.00 4.24
5018 8296 5.230942 CAAATAGACGGGATACTTAGCAGG 58.769 45.833 0.00 0.00 0.00 4.85
5019 8297 1.041437 AGACGGGATACTTAGCAGGC 58.959 55.000 0.00 0.00 0.00 4.85
5020 8298 0.750850 GACGGGATACTTAGCAGGCA 59.249 55.000 0.00 0.00 0.00 4.75
5089 8368 2.882137 CGAAACCAACACCACATAACCT 59.118 45.455 0.00 0.00 0.00 3.50
5108 8388 3.112263 CCTACATAGGTTCCTGGTCCAA 58.888 50.000 11.69 0.00 38.69 3.53
5144 8424 8.846211 CCAAAGTATCTCAAGTTTACCTCAAAA 58.154 33.333 0.00 0.00 0.00 2.44
5147 8427 8.392372 AGTATCTCAAGTTTACCTCAAAAACC 57.608 34.615 0.00 0.00 37.51 3.27
5148 8428 7.996644 AGTATCTCAAGTTTACCTCAAAAACCA 59.003 33.333 0.00 0.00 37.51 3.67
5149 8429 7.654022 ATCTCAAGTTTACCTCAAAAACCAA 57.346 32.000 0.00 0.00 37.51 3.67
5150 8430 7.095695 TCTCAAGTTTACCTCAAAAACCAAG 57.904 36.000 0.00 0.00 37.51 3.61
5151 8431 6.096282 TCTCAAGTTTACCTCAAAAACCAAGG 59.904 38.462 0.00 0.00 37.51 3.61
5191 8471 1.298014 CAGACTCCCAGGAAGCCAC 59.702 63.158 0.00 0.00 0.00 5.01
5215 8495 0.609131 CGCTCCCCCAAAGACAACAT 60.609 55.000 0.00 0.00 0.00 2.71
5256 8536 3.380320 TCTGCTAGATAACGCTAAGCACA 59.620 43.478 0.00 0.00 0.00 4.57
5315 8595 1.079127 CGCCATCGGGAAGAACACT 60.079 57.895 0.00 0.00 35.59 3.55
5353 8633 0.466739 AACCCCGGGTTGTTCTTCAC 60.467 55.000 21.79 0.00 45.07 3.18
5496 8782 0.319728 TGGTCTCTGAACTGAGCTGC 59.680 55.000 0.00 0.00 34.29 5.25
5500 8786 1.966354 TCTCTGAACTGAGCTGCTTGA 59.034 47.619 2.53 0.00 34.29 3.02
5543 8829 1.982958 GTTTTGTCCAGTCCCCTAGGA 59.017 52.381 11.48 0.00 41.08 2.94
5595 8881 9.474920 CTTGACAGAGATCCATTTAGTTCTATC 57.525 37.037 0.00 0.00 0.00 2.08
5782 9069 6.812656 TGTGATAGGCATTTTGCTTATGTTTG 59.187 34.615 8.61 0.00 44.22 2.93
5786 9073 5.792741 AGGCATTTTGCTTATGTTTGCTTA 58.207 33.333 0.00 0.00 44.28 3.09
5802 9123 4.495911 TGCTTATGTTGACGCATCAAAA 57.504 36.364 0.00 0.00 46.40 2.44
5803 9124 4.475028 TGCTTATGTTGACGCATCAAAAG 58.525 39.130 0.00 0.00 46.40 2.27
5808 9129 7.466725 GCTTATGTTGACGCATCAAAAGGTATA 60.467 37.037 0.00 0.00 46.40 1.47
5819 9140 6.715464 CATCAAAAGGTATAACTAACTGCGG 58.285 40.000 0.00 0.00 0.00 5.69
6049 9373 5.483685 TCTGTACTTTTACCAGAGCACAT 57.516 39.130 0.00 0.00 0.00 3.21
6061 9385 1.002134 AGCACATCAAGGGTTCGGG 60.002 57.895 0.00 0.00 0.00 5.14
6121 9445 6.060136 CAGTCTCCACAAATATCATGACCAT 58.940 40.000 0.00 0.00 0.00 3.55
6130 9454 8.748582 CACAAATATCATGACCATTGAATTTCG 58.251 33.333 18.03 6.47 0.00 3.46
6151 9475 7.940178 TTCGTCGACAATATTGCTTATACAT 57.060 32.000 17.16 0.00 0.00 2.29
6161 9485 9.236691 CAATATTGCTTATACATTCGTTTGCTT 57.763 29.630 1.74 0.00 0.00 3.91
6213 9552 0.902531 ACATGGACGAGAAATCGGGT 59.097 50.000 0.00 0.00 37.45 5.28
6355 9694 0.599204 CTACGGGCACAACAAGTCGT 60.599 55.000 0.00 0.00 35.07 4.34
6398 9740 3.057337 CAAGGGAGGACCGTCGTT 58.943 61.111 0.00 0.00 46.96 3.85
6413 9755 3.723348 GTTGTCAGAACCGCCGCC 61.723 66.667 0.00 0.00 0.00 6.13
6432 9774 0.390866 CTCATGAAGCAGACGCCACT 60.391 55.000 0.00 0.00 39.83 4.00
6532 9874 0.398318 GGACCACCTGAGCTTCAAGT 59.602 55.000 0.00 0.00 0.00 3.16
6539 9881 1.671261 CCTGAGCTTCAAGTGGACGAG 60.671 57.143 0.00 0.00 0.00 4.18
6540 9882 0.318441 TGAGCTTCAAGTGGACGAGG 59.682 55.000 0.00 0.00 0.00 4.63
6624 9966 2.045926 GACTTGTGCCGGAGCCAT 60.046 61.111 5.05 0.00 38.69 4.40
6715 10057 2.972713 GTGATAGATGGGCTGGGTAGAA 59.027 50.000 0.00 0.00 0.00 2.10
6716 10058 2.972713 TGATAGATGGGCTGGGTAGAAC 59.027 50.000 0.00 0.00 0.00 3.01
6742 10084 7.148606 CGACTCTTTCGTTTAGTTAGAGAGAGA 60.149 40.741 15.86 0.64 42.41 3.10
6746 10088 8.095792 TCTTTCGTTTAGTTAGAGAGAGAGAGA 58.904 37.037 0.00 0.00 0.00 3.10
6748 10090 7.172868 TCGTTTAGTTAGAGAGAGAGAGAGA 57.827 40.000 0.00 0.00 0.00 3.10
6752 10094 7.727578 TTAGTTAGAGAGAGAGAGAGAGTGA 57.272 40.000 0.00 0.00 0.00 3.41
6753 10095 6.227298 AGTTAGAGAGAGAGAGAGAGTGAG 57.773 45.833 0.00 0.00 0.00 3.51
6754 10096 5.958380 AGTTAGAGAGAGAGAGAGAGTGAGA 59.042 44.000 0.00 0.00 0.00 3.27
6893 10238 8.190122 TGTTTTCTGTCATCATATATGTTTGGC 58.810 33.333 12.42 12.71 0.00 4.52
6971 10318 7.451255 TGATTTGAATGGAAATATAGCGGGATT 59.549 33.333 0.00 0.00 0.00 3.01
6977 10324 5.305585 TGGAAATATAGCGGGATTCAGAAC 58.694 41.667 0.00 0.00 0.00 3.01
6997 10344 3.600388 ACCGATGTTCAATCTCTTCACC 58.400 45.455 0.00 0.00 0.00 4.02
6998 10345 3.261897 ACCGATGTTCAATCTCTTCACCT 59.738 43.478 0.00 0.00 0.00 4.00
6999 10346 4.256920 CCGATGTTCAATCTCTTCACCTT 58.743 43.478 0.00 0.00 0.00 3.50
7000 10347 4.331168 CCGATGTTCAATCTCTTCACCTTC 59.669 45.833 0.00 0.00 0.00 3.46
7002 10349 5.290643 CGATGTTCAATCTCTTCACCTTCTC 59.709 44.000 0.00 0.00 0.00 2.87
7003 10350 4.899502 TGTTCAATCTCTTCACCTTCTCC 58.100 43.478 0.00 0.00 0.00 3.71
7004 10351 4.347876 TGTTCAATCTCTTCACCTTCTCCA 59.652 41.667 0.00 0.00 0.00 3.86
7005 10352 4.543590 TCAATCTCTTCACCTTCTCCAC 57.456 45.455 0.00 0.00 0.00 4.02
7006 10353 4.163427 TCAATCTCTTCACCTTCTCCACT 58.837 43.478 0.00 0.00 0.00 4.00
7009 10356 2.558795 TCTCTTCACCTTCTCCACTTCG 59.441 50.000 0.00 0.00 0.00 3.79
7010 10357 1.000955 TCTTCACCTTCTCCACTTCGC 59.999 52.381 0.00 0.00 0.00 4.70
7014 10361 1.122019 ACCTTCTCCACTTCGCCACT 61.122 55.000 0.00 0.00 0.00 4.00
7015 10362 0.390472 CCTTCTCCACTTCGCCACTC 60.390 60.000 0.00 0.00 0.00 3.51
7016 10363 0.390472 CTTCTCCACTTCGCCACTCC 60.390 60.000 0.00 0.00 0.00 3.85
7017 10364 1.827399 TTCTCCACTTCGCCACTCCC 61.827 60.000 0.00 0.00 0.00 4.30
7018 10365 3.316573 CTCCACTTCGCCACTCCCC 62.317 68.421 0.00 0.00 0.00 4.81
7019 10366 4.410400 CCACTTCGCCACTCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
7036 10383 3.230743 CCCCCTTCACTTATTTTTGCG 57.769 47.619 0.00 0.00 0.00 4.85
7037 10384 2.823154 CCCCCTTCACTTATTTTTGCGA 59.177 45.455 0.00 0.00 0.00 5.10
7042 10389 6.127730 CCCCTTCACTTATTTTTGCGAATACT 60.128 38.462 0.00 0.00 0.00 2.12
7044 10391 6.251376 CCTTCACTTATTTTTGCGAATACTGC 59.749 38.462 0.00 0.00 0.00 4.40
7047 10394 7.312154 TCACTTATTTTTGCGAATACTGCATT 58.688 30.769 0.00 0.00 42.84 3.56
7048 10395 8.454894 TCACTTATTTTTGCGAATACTGCATTA 58.545 29.630 0.00 0.00 42.84 1.90
7050 10397 9.450807 ACTTATTTTTGCGAATACTGCATTATC 57.549 29.630 0.00 0.00 42.84 1.75
7052 10399 6.449635 TTTTTGCGAATACTGCATTATCCT 57.550 33.333 0.00 0.00 42.84 3.24
7061 10414 7.404671 AATACTGCATTATCCTTTTTCGGTT 57.595 32.000 0.00 0.00 0.00 4.44
7067 10420 6.152661 TGCATTATCCTTTTTCGGTTCAGAAT 59.847 34.615 0.00 0.00 0.00 2.40
7068 10421 6.473455 GCATTATCCTTTTTCGGTTCAGAATG 59.527 38.462 0.00 0.00 37.54 2.67
7085 10438 6.855836 TCAGAATGAGTGGAATTTATGTTGC 58.144 36.000 0.00 0.00 42.56 4.17
7087 10440 6.750501 CAGAATGAGTGGAATTTATGTTGCAG 59.249 38.462 0.00 0.00 39.69 4.41
7090 10443 3.763897 GAGTGGAATTTATGTTGCAGGGT 59.236 43.478 0.00 0.00 29.77 4.34
7092 10445 3.509575 GTGGAATTTATGTTGCAGGGTGA 59.490 43.478 0.00 0.00 29.77 4.02
7094 10447 5.359576 GTGGAATTTATGTTGCAGGGTGATA 59.640 40.000 0.00 0.00 29.77 2.15
7095 10448 5.359576 TGGAATTTATGTTGCAGGGTGATAC 59.640 40.000 0.00 0.00 0.00 2.24
7103 10458 3.576078 TGCAGGGTGATACCAAATAGG 57.424 47.619 0.00 0.00 41.02 2.57
7109 10464 4.920129 AGGGTGATACCAAATAGGCCTTAT 59.080 41.667 12.58 0.05 41.02 1.73
7110 10465 6.012858 CAGGGTGATACCAAATAGGCCTTATA 60.013 42.308 12.58 0.00 41.02 0.98
7125 10480 7.745620 AGGCCTTATAATACCTGAATTTTCG 57.254 36.000 0.00 0.00 0.00 3.46
7133 10488 3.208747 ACCTGAATTTTCGGTGTGTCT 57.791 42.857 6.18 0.00 34.46 3.41
7138 10493 1.238439 ATTTTCGGTGTGTCTGGCAG 58.762 50.000 8.58 8.58 0.00 4.85
7140 10495 2.324014 TTTCGGTGTGTCTGGCAGCT 62.324 55.000 10.34 0.00 32.75 4.24
7150 10505 0.320421 TCTGGCAGCTTGTCGTTACC 60.320 55.000 10.34 0.00 0.00 2.85
7154 10509 1.135689 GGCAGCTTGTCGTTACCATTG 60.136 52.381 0.00 0.00 0.00 2.82
7155 10510 1.729149 GCAGCTTGTCGTTACCATTGC 60.729 52.381 0.00 0.00 0.00 3.56
7156 10511 1.535028 CAGCTTGTCGTTACCATTGCA 59.465 47.619 0.00 0.00 0.00 4.08
7157 10512 2.162208 CAGCTTGTCGTTACCATTGCAT 59.838 45.455 0.00 0.00 0.00 3.96
7158 10513 2.819608 AGCTTGTCGTTACCATTGCATT 59.180 40.909 0.00 0.00 0.00 3.56
7159 10514 3.255642 AGCTTGTCGTTACCATTGCATTT 59.744 39.130 0.00 0.00 0.00 2.32
7160 10515 3.364621 GCTTGTCGTTACCATTGCATTTG 59.635 43.478 0.00 0.00 0.00 2.32
7161 10516 4.793071 CTTGTCGTTACCATTGCATTTGA 58.207 39.130 0.00 0.00 0.00 2.69
7162 10517 4.153958 TGTCGTTACCATTGCATTTGAC 57.846 40.909 0.00 0.00 0.00 3.18
7163 10518 3.818210 TGTCGTTACCATTGCATTTGACT 59.182 39.130 0.00 0.00 0.00 3.41
7164 10519 4.277174 TGTCGTTACCATTGCATTTGACTT 59.723 37.500 0.00 0.00 0.00 3.01
7165 10520 5.219633 GTCGTTACCATTGCATTTGACTTT 58.780 37.500 0.00 0.00 0.00 2.66
7166 10521 5.116983 GTCGTTACCATTGCATTTGACTTTG 59.883 40.000 0.00 0.00 0.00 2.77
7167 10522 4.981674 CGTTACCATTGCATTTGACTTTGT 59.018 37.500 0.00 0.00 0.00 2.83
7168 10523 6.017026 TCGTTACCATTGCATTTGACTTTGTA 60.017 34.615 0.00 0.00 0.00 2.41
7169 10524 6.638873 CGTTACCATTGCATTTGACTTTGTAA 59.361 34.615 0.00 0.00 0.00 2.41
7170 10525 7.168302 CGTTACCATTGCATTTGACTTTGTAAA 59.832 33.333 0.00 0.00 0.00 2.01
7171 10526 8.821894 GTTACCATTGCATTTGACTTTGTAAAA 58.178 29.630 0.00 0.00 0.00 1.52
7172 10527 9.553064 TTACCATTGCATTTGACTTTGTAAAAT 57.447 25.926 0.00 0.00 27.42 1.82
7174 10529 9.723601 ACCATTGCATTTGACTTTGTAAAATAT 57.276 25.926 0.00 0.00 26.72 1.28
7198 10553 7.745620 TCTTTAATCAAGAGAACCTTCCAAC 57.254 36.000 0.00 0.00 36.51 3.77
7199 10554 7.287061 TCTTTAATCAAGAGAACCTTCCAACA 58.713 34.615 0.00 0.00 36.51 3.33
7200 10555 7.777910 TCTTTAATCAAGAGAACCTTCCAACAA 59.222 33.333 0.00 0.00 36.51 2.83
7201 10556 8.477419 TTTAATCAAGAGAACCTTCCAACAAT 57.523 30.769 0.00 0.00 31.42 2.71
7202 10557 5.972107 ATCAAGAGAACCTTCCAACAATG 57.028 39.130 0.00 0.00 31.42 2.82
7203 10558 5.047566 TCAAGAGAACCTTCCAACAATGA 57.952 39.130 0.00 0.00 31.42 2.57
7204 10559 5.445069 TCAAGAGAACCTTCCAACAATGAA 58.555 37.500 0.00 0.00 31.42 2.57
7205 10560 5.532406 TCAAGAGAACCTTCCAACAATGAAG 59.468 40.000 0.00 0.00 39.13 3.02
7212 10567 3.611025 TTCCAACAATGAAGGAAGGGT 57.389 42.857 6.97 0.00 36.55 4.34
7213 10568 3.611025 TCCAACAATGAAGGAAGGGTT 57.389 42.857 0.00 0.00 0.00 4.11
7214 10569 4.733077 TCCAACAATGAAGGAAGGGTTA 57.267 40.909 0.00 0.00 0.00 2.85
7215 10570 4.403734 TCCAACAATGAAGGAAGGGTTAC 58.596 43.478 0.00 0.00 0.00 2.50
7216 10571 3.509967 CCAACAATGAAGGAAGGGTTACC 59.490 47.826 0.00 0.00 0.00 2.85
7217 10572 3.451402 ACAATGAAGGAAGGGTTACCC 57.549 47.619 13.56 13.56 45.90 3.69
7263 10618 6.945072 CCATTAGTGGTCTTATAACGAAAGC 58.055 40.000 0.00 0.00 40.83 3.51
7264 10619 6.292168 CCATTAGTGGTCTTATAACGAAAGCG 60.292 42.308 0.00 0.00 40.83 4.68
7265 10620 4.445452 AGTGGTCTTATAACGAAAGCGA 57.555 40.909 0.00 0.00 41.64 4.93
7266 10621 4.813027 AGTGGTCTTATAACGAAAGCGAA 58.187 39.130 0.00 0.00 41.64 4.70
7267 10622 4.624452 AGTGGTCTTATAACGAAAGCGAAC 59.376 41.667 0.00 0.00 41.64 3.95
7268 10623 3.928375 TGGTCTTATAACGAAAGCGAACC 59.072 43.478 0.00 0.00 41.64 3.62
7269 10624 3.928375 GGTCTTATAACGAAAGCGAACCA 59.072 43.478 0.00 0.00 41.64 3.67
7270 10625 4.389687 GGTCTTATAACGAAAGCGAACCAA 59.610 41.667 0.00 0.00 41.64 3.67
7271 10626 5.106987 GGTCTTATAACGAAAGCGAACCAAA 60.107 40.000 0.00 0.00 41.64 3.28
7272 10627 5.787062 GTCTTATAACGAAAGCGAACCAAAC 59.213 40.000 0.00 0.00 41.64 2.93
7273 10628 5.466058 TCTTATAACGAAAGCGAACCAAACA 59.534 36.000 0.00 0.00 41.64 2.83
7274 10629 2.468532 AACGAAAGCGAACCAAACAG 57.531 45.000 0.00 0.00 41.64 3.16
7275 10630 1.658994 ACGAAAGCGAACCAAACAGA 58.341 45.000 0.00 0.00 41.64 3.41
7276 10631 1.329599 ACGAAAGCGAACCAAACAGAC 59.670 47.619 0.00 0.00 41.64 3.51
7277 10632 1.329292 CGAAAGCGAACCAAACAGACA 59.671 47.619 0.00 0.00 40.82 3.41
7278 10633 2.223157 CGAAAGCGAACCAAACAGACAA 60.223 45.455 0.00 0.00 40.82 3.18
7279 10634 3.729462 CGAAAGCGAACCAAACAGACAAA 60.729 43.478 0.00 0.00 40.82 2.83
7280 10635 3.859411 AAGCGAACCAAACAGACAAAA 57.141 38.095 0.00 0.00 0.00 2.44
7281 10636 3.420839 AGCGAACCAAACAGACAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
7282 10637 3.013921 AGCGAACCAAACAGACAAAAGA 58.986 40.909 0.00 0.00 0.00 2.52
7283 10638 3.065371 AGCGAACCAAACAGACAAAAGAG 59.935 43.478 0.00 0.00 0.00 2.85
7284 10639 3.792124 GCGAACCAAACAGACAAAAGAGG 60.792 47.826 0.00 0.00 0.00 3.69
7285 10640 3.625764 CGAACCAAACAGACAAAAGAGGA 59.374 43.478 0.00 0.00 0.00 3.71
7286 10641 4.095782 CGAACCAAACAGACAAAAGAGGAA 59.904 41.667 0.00 0.00 0.00 3.36
7287 10642 5.392595 CGAACCAAACAGACAAAAGAGGAAA 60.393 40.000 0.00 0.00 0.00 3.13
7288 10643 5.324784 ACCAAACAGACAAAAGAGGAAAC 57.675 39.130 0.00 0.00 0.00 2.78
7289 10644 4.770010 ACCAAACAGACAAAAGAGGAAACA 59.230 37.500 0.00 0.00 0.00 2.83
7290 10645 5.102313 CCAAACAGACAAAAGAGGAAACAC 58.898 41.667 0.00 0.00 0.00 3.32
7291 10646 4.616181 AACAGACAAAAGAGGAAACACG 57.384 40.909 0.00 0.00 0.00 4.49
7292 10647 2.354821 ACAGACAAAAGAGGAAACACGC 59.645 45.455 0.00 0.00 0.00 5.34
7293 10648 2.614057 CAGACAAAAGAGGAAACACGCT 59.386 45.455 0.00 0.00 0.00 5.07
7294 10649 2.614057 AGACAAAAGAGGAAACACGCTG 59.386 45.455 0.00 0.00 0.00 5.18
7295 10650 1.676006 ACAAAAGAGGAAACACGCTGG 59.324 47.619 0.00 0.00 0.00 4.85
7296 10651 1.946768 CAAAAGAGGAAACACGCTGGA 59.053 47.619 0.00 0.00 0.00 3.86
7297 10652 1.884235 AAAGAGGAAACACGCTGGAG 58.116 50.000 0.00 0.00 0.00 3.86
7298 10653 0.603975 AAGAGGAAACACGCTGGAGC 60.604 55.000 0.00 0.00 37.78 4.70
7299 10654 2.032681 AGGAAACACGCTGGAGCC 59.967 61.111 0.00 0.00 37.91 4.70
7300 10655 2.032681 GGAAACACGCTGGAGCCT 59.967 61.111 0.00 0.00 37.91 4.58
7301 10656 2.328099 GGAAACACGCTGGAGCCTG 61.328 63.158 0.00 0.00 37.91 4.85
7302 10657 1.301716 GAAACACGCTGGAGCCTGA 60.302 57.895 4.86 0.00 37.91 3.86
7303 10658 0.884704 GAAACACGCTGGAGCCTGAA 60.885 55.000 4.86 0.00 37.91 3.02
7304 10659 0.886490 AAACACGCTGGAGCCTGAAG 60.886 55.000 4.86 0.00 37.91 3.02
7305 10660 1.758440 AACACGCTGGAGCCTGAAGA 61.758 55.000 4.86 0.00 37.91 2.87
7306 10661 1.739562 CACGCTGGAGCCTGAAGAC 60.740 63.158 0.00 0.00 37.91 3.01
7307 10662 2.125350 CGCTGGAGCCTGAAGACC 60.125 66.667 0.00 0.00 37.91 3.85
7308 10663 2.270527 GCTGGAGCCTGAAGACCC 59.729 66.667 0.00 0.00 34.31 4.46
7309 10664 2.596851 GCTGGAGCCTGAAGACCCA 61.597 63.158 0.00 0.00 34.31 4.51
7310 10665 1.601171 CTGGAGCCTGAAGACCCAG 59.399 63.158 0.00 0.00 38.48 4.45
7311 10666 2.270527 GGAGCCTGAAGACCCAGC 59.729 66.667 0.00 0.00 32.97 4.85
7312 10667 2.596851 GGAGCCTGAAGACCCAGCA 61.597 63.158 0.00 0.00 32.97 4.41
7313 10668 1.606531 GAGCCTGAAGACCCAGCAT 59.393 57.895 0.00 0.00 32.97 3.79
7314 10669 0.833287 GAGCCTGAAGACCCAGCATA 59.167 55.000 0.00 0.00 32.97 3.14
7315 10670 0.543749 AGCCTGAAGACCCAGCATAC 59.456 55.000 0.00 0.00 32.97 2.39
7316 10671 0.543749 GCCTGAAGACCCAGCATACT 59.456 55.000 0.00 0.00 32.97 2.12
7317 10672 1.745141 GCCTGAAGACCCAGCATACTG 60.745 57.143 0.00 0.00 44.05 2.74
7374 10731 0.179034 CCTCCACCATCTAAGCAGGC 60.179 60.000 0.00 0.00 0.00 4.85
7375 10732 0.835941 CTCCACCATCTAAGCAGGCT 59.164 55.000 0.00 0.00 0.00 4.58
7439 10928 8.103305 AGAATTGATTAAAGAACAGGCTCTGTA 58.897 33.333 8.07 0.00 44.62 2.74
7462 10951 9.186837 TGTAAACAATTACAAAAGGGTCAAGTA 57.813 29.630 0.00 0.00 46.34 2.24
7475 10964 2.059541 GTCAAGTACACTCCTGCGTTC 58.940 52.381 0.00 0.00 0.00 3.95
7477 10966 2.061773 CAAGTACACTCCTGCGTTCAG 58.938 52.381 0.00 0.00 40.02 3.02
7512 11001 4.610605 TCGACAGTTCCAAATAGACCAA 57.389 40.909 0.00 0.00 0.00 3.67
7521 11010 4.585879 TCCAAATAGACCAAGTTACAGCC 58.414 43.478 0.00 0.00 0.00 4.85
7538 11027 3.252458 ACAGCCGAAATACCAACTGAAAC 59.748 43.478 0.00 0.00 0.00 2.78
7545 11034 6.537301 CCGAAATACCAACTGAAACTAGCATA 59.463 38.462 0.00 0.00 0.00 3.14
7566 11055 8.348507 AGCATATTCTTATCTTTGCTAAACTGC 58.651 33.333 0.00 0.00 38.57 4.40
7595 11084 8.648557 AGCCAAGAAGAAAATAAAGTTTTCAC 57.351 30.769 13.71 8.40 40.01 3.18
7632 11121 5.531634 ACTCGCAAATTGAATGAACATTGT 58.468 33.333 4.72 0.00 0.00 2.71
7634 11123 6.803320 ACTCGCAAATTGAATGAACATTGTAG 59.197 34.615 4.72 0.00 0.00 2.74
7651 11140 3.735591 TGTAGTAAGCTCCACACAAACC 58.264 45.455 0.00 0.00 0.00 3.27
7665 11156 0.595095 CAAACCTGGCAACTGAGAGC 59.405 55.000 0.00 0.00 37.83 4.09
7711 11202 2.480419 CCTCATCACGACCACAAAAGAC 59.520 50.000 0.00 0.00 0.00 3.01
7719 11210 2.780993 GACCACAAAAGACACAACACG 58.219 47.619 0.00 0.00 0.00 4.49
7721 11212 3.336468 ACCACAAAAGACACAACACGTA 58.664 40.909 0.00 0.00 0.00 3.57
7735 11226 5.584649 CACAACACGTATTACCATTCCATCT 59.415 40.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 4.348168 GGTCTGAAGGAAATATGCCCTAGA 59.652 45.833 0.00 0.00 31.36 2.43
102 104 2.352805 GGCCCAGTGGAAGGTCTG 59.647 66.667 11.95 0.00 0.00 3.51
165 167 4.162690 GCGGCCACCTACCTCCTG 62.163 72.222 2.24 0.00 0.00 3.86
326 328 3.181477 TGAGGTAAAACGGACAAACGAGA 60.181 43.478 0.00 0.00 37.61 4.04
381 383 1.737793 CGTGAATTAGGCCAACTCCAC 59.262 52.381 5.01 6.52 0.00 4.02
427 429 0.660595 CACTCGACTGTCACCGTGTC 60.661 60.000 8.73 0.00 31.38 3.67
1580 1679 3.127548 CCAATCCCAATGTTCGTCAGAAG 59.872 47.826 0.00 0.00 36.99 2.85
1595 1694 4.225573 TGATTCATTCATTCCCCAATCCC 58.774 43.478 0.00 0.00 0.00 3.85
1608 1707 2.542411 GGGCACGCTGATTGATTCATTC 60.542 50.000 2.31 2.31 32.72 2.67
1612 1711 1.353103 CGGGCACGCTGATTGATTC 59.647 57.895 0.00 0.00 0.00 2.52
1685 1791 0.323725 AATGGCCGCCAAGATTGACT 60.324 50.000 18.00 0.00 36.95 3.41
1719 1825 1.148273 GTGTGTGAGCAACCCTCCA 59.852 57.895 0.00 0.00 39.98 3.86
1720 1826 1.961277 CGTGTGTGAGCAACCCTCC 60.961 63.158 0.00 0.00 39.98 4.30
1721 1827 1.961277 CCGTGTGTGAGCAACCCTC 60.961 63.158 0.00 0.00 41.15 4.30
1722 1828 1.768684 ATCCGTGTGTGAGCAACCCT 61.769 55.000 0.00 0.00 0.00 4.34
1723 1829 0.889186 AATCCGTGTGTGAGCAACCC 60.889 55.000 0.00 0.00 0.00 4.11
1727 1843 0.037326 GAGGAATCCGTGTGTGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
1730 1846 2.248248 AGAAGAGGAATCCGTGTGTGA 58.752 47.619 0.00 0.00 0.00 3.58
1734 1850 2.354203 GCTCAAGAAGAGGAATCCGTGT 60.354 50.000 0.00 0.00 44.86 4.49
1735 1851 2.275318 GCTCAAGAAGAGGAATCCGTG 58.725 52.381 0.00 0.00 44.86 4.94
1737 1853 1.804372 CGGCTCAAGAAGAGGAATCCG 60.804 57.143 0.00 0.00 44.86 4.18
1750 1866 2.009774 GATTAAGCAAGCTCGGCTCAA 58.990 47.619 12.67 5.90 41.66 3.02
1752 1868 1.596727 CAGATTAAGCAAGCTCGGCTC 59.403 52.381 12.67 2.03 41.66 4.70
1756 1872 3.615614 GAATGCAGATTAAGCAAGCTCG 58.384 45.455 9.13 0.00 46.27 5.03
1836 1961 3.499918 CGCAAAGATGGAAGTTTCTGTCT 59.500 43.478 0.00 0.00 0.00 3.41
1864 1989 1.153823 ATCGAAGAGGCGGTCAACG 60.154 57.895 0.00 0.00 43.63 4.10
1874 2002 3.847542 CTCCATGGATAGCATCGAAGAG 58.152 50.000 16.63 0.00 43.63 2.85
1943 2072 0.668535 AAGTCAAAGCGGCCAAGTTC 59.331 50.000 2.24 0.00 0.00 3.01
1963 2092 2.771943 TCCAGTTCTTCCTTGTGACTGT 59.228 45.455 0.00 0.00 0.00 3.55
1978 2107 1.421268 TCTGTGCTTCACCATCCAGTT 59.579 47.619 0.00 0.00 32.73 3.16
2039 2168 5.878332 AATCATTTCGACAGCAACATACA 57.122 34.783 0.00 0.00 0.00 2.29
2084 2213 8.687242 AGATAGATACTTGAGTTTCGATTGTCA 58.313 33.333 0.00 0.00 32.42 3.58
2086 2215 7.923344 CCAGATAGATACTTGAGTTTCGATTGT 59.077 37.037 0.00 0.00 32.42 2.71
2087 2216 7.923344 ACCAGATAGATACTTGAGTTTCGATTG 59.077 37.037 0.00 0.00 32.42 2.67
2088 2217 8.012957 ACCAGATAGATACTTGAGTTTCGATT 57.987 34.615 0.00 0.00 32.42 3.34
2089 2218 7.589958 ACCAGATAGATACTTGAGTTTCGAT 57.410 36.000 0.00 0.00 32.42 3.59
2090 2219 7.406031 AACCAGATAGATACTTGAGTTTCGA 57.594 36.000 0.00 0.00 32.42 3.71
2091 2220 9.239002 CTTAACCAGATAGATACTTGAGTTTCG 57.761 37.037 0.00 0.00 32.42 3.46
2092 2221 9.535878 CCTTAACCAGATAGATACTTGAGTTTC 57.464 37.037 0.00 0.00 0.00 2.78
2093 2222 8.487028 CCCTTAACCAGATAGATACTTGAGTTT 58.513 37.037 0.00 0.00 0.00 2.66
2102 2231 6.489361 GTCGAACTCCCTTAACCAGATAGATA 59.511 42.308 0.00 0.00 0.00 1.98
2125 2258 2.747989 TCTATGACTGAGTGACGGTGTC 59.252 50.000 0.00 0.00 38.34 3.67
2126 2259 2.791655 TCTATGACTGAGTGACGGTGT 58.208 47.619 0.00 0.00 38.34 4.16
2128 2261 2.690497 CCATCTATGACTGAGTGACGGT 59.310 50.000 0.00 0.00 41.27 4.83
2135 2268 3.324268 AGACATGGCCATCTATGACTGAG 59.676 47.826 17.61 2.72 30.32 3.35
2142 2275 2.371179 CAGTGGAGACATGGCCATCTAT 59.629 50.000 17.61 0.00 46.14 1.98
2187 2320 2.421399 GGCCAGATGAAAGCAGCCC 61.421 63.158 0.00 0.00 34.23 5.19
2192 2330 1.093159 CTCACTGGCCAGATGAAAGC 58.907 55.000 39.19 0.00 0.00 3.51
2281 2428 1.806542 TCTTTCCAATCTGAAGCGCAC 59.193 47.619 11.47 3.52 0.00 5.34
2310 2457 5.880332 AGGTACTAACACCATGTTGCTATTG 59.120 40.000 4.46 0.00 41.30 1.90
2356 2503 1.944177 ACTGACTATGCTGGACCTGT 58.056 50.000 0.00 0.00 0.00 4.00
2382 2529 6.944234 AACTAACAGAGGAAGAAACCTTTG 57.056 37.500 0.00 0.00 44.43 2.77
2384 2531 6.062749 GGAAACTAACAGAGGAAGAAACCTT 58.937 40.000 0.00 0.00 40.73 3.50
2386 2533 5.622180 AGGAAACTAACAGAGGAAGAAACC 58.378 41.667 0.00 0.00 40.61 3.27
2387 2534 8.850007 ATAAGGAAACTAACAGAGGAAGAAAC 57.150 34.615 0.00 0.00 42.68 2.78
2422 2571 6.530181 CCTTTTAAGAAACAACAACAGGTGTC 59.470 38.462 0.00 0.00 40.60 3.67
2432 2581 7.330946 GCCATATTGTCCCTTTTAAGAAACAAC 59.669 37.037 10.01 0.00 35.00 3.32
2476 2627 8.941995 TGGAAATATAGAGTATAGCACAGAGT 57.058 34.615 0.00 0.00 0.00 3.24
2491 2645 6.506464 ACGAACGACGAATTGGAAATATAG 57.494 37.500 0.00 0.00 45.77 1.31
2513 3149 6.238429 CCGATATATTCTTAGCTCTCCGGTAC 60.238 46.154 0.00 0.00 0.00 3.34
2518 3154 6.238814 GGCTACCGATATATTCTTAGCTCTCC 60.239 46.154 14.92 2.15 35.46 3.71
2526 3162 6.043938 TGGGAAAAGGCTACCGATATATTCTT 59.956 38.462 0.00 0.00 0.00 2.52
2630 3266 1.001633 TCTAACACCTCAACGGCCTTC 59.998 52.381 0.00 0.00 35.61 3.46
2909 3545 7.743520 TGAAAACTTGCTTTTAAACTAACCG 57.256 32.000 0.00 0.00 31.81 4.44
2945 3581 7.220108 ACAACGTTTACAGCAAGAAGAATTTTC 59.780 33.333 0.00 0.00 0.00 2.29
2946 3582 7.033185 ACAACGTTTACAGCAAGAAGAATTTT 58.967 30.769 0.00 0.00 0.00 1.82
2958 3594 3.296628 CCACATCAACAACGTTTACAGC 58.703 45.455 0.00 0.00 0.00 4.40
2980 3616 3.925379 CCTGTTGGGTTCCATTTAAAGC 58.075 45.455 0.00 0.00 31.53 3.51
3197 3839 0.251519 GATCCTGGGGCATGGAATCC 60.252 60.000 0.00 0.00 35.81 3.01
3314 4067 2.386661 ATGAAGTACAAGCACCTCCG 57.613 50.000 0.00 0.00 0.00 4.63
3555 4763 1.065199 TCATGGTAAAGCTCCTGCAGG 60.065 52.381 27.87 27.87 42.74 4.85
3755 6614 9.499585 CAAAATCATAACACTCTCTGCAAATAG 57.500 33.333 0.00 0.00 0.00 1.73
3757 6616 6.810182 GCAAAATCATAACACTCTCTGCAAAT 59.190 34.615 0.00 0.00 0.00 2.32
3892 6944 8.778358 CAGAATTACAGAAGGCCAAGATATAAC 58.222 37.037 5.01 0.00 0.00 1.89
3979 7031 5.525199 TCAAAAGAACGAAAAGGCAATACC 58.475 37.500 0.00 0.00 39.61 2.73
4040 7094 4.142902 ACGATATCAACAAGCTTTTCCACG 60.143 41.667 0.00 0.00 0.00 4.94
4177 7231 9.918630 GTACCTACAGTAACTGTTTATTCAGAA 57.081 33.333 0.00 0.00 42.59 3.02
4193 7247 4.673968 TCCATGAAGTCAGTACCTACAGT 58.326 43.478 0.00 0.00 0.00 3.55
4238 7292 2.838360 TGCCAGACCACATGCACT 59.162 55.556 0.00 0.00 0.00 4.40
4342 7396 7.801893 TTGACTACATTAAGGAAAGTAGGGA 57.198 36.000 0.00 0.00 38.54 4.20
4552 7645 6.948353 TGTAGACTTACGTGATACCGATAAC 58.052 40.000 0.00 0.00 32.21 1.89
4566 7659 8.842280 AGTATAGACTGAAGCATGTAGACTTAC 58.158 37.037 0.00 1.83 33.41 2.34
4621 7722 7.097834 AGAACCCTATTCTTGTTTCTTACTCG 58.902 38.462 0.00 0.00 0.00 4.18
4624 7725 8.794335 ATGAGAACCCTATTCTTGTTTCTTAC 57.206 34.615 0.00 0.00 0.00 2.34
4653 7761 5.755375 CGAGAAACCTGCATATGTAGACAAT 59.245 40.000 21.02 5.42 0.00 2.71
4794 7902 3.299503 ACTTTTCAGGGTTGTGCAAGAT 58.700 40.909 0.00 0.00 0.00 2.40
4820 7928 6.195868 CACGTGCACATACAAGTAAGAAAAA 58.804 36.000 18.64 0.00 30.82 1.94
4832 7940 2.010145 ACAGATCCACGTGCACATAC 57.990 50.000 18.64 1.70 0.00 2.39
4868 8142 3.828875 AGTGCTAAGCTTGATCTACCC 57.171 47.619 9.86 0.00 0.00 3.69
4872 8146 6.126409 ACTCTACTAGTGCTAAGCTTGATCT 58.874 40.000 9.86 5.00 36.93 2.75
4913 8190 4.657504 AGAACTGAATCATGGCTATGGAGA 59.342 41.667 10.47 0.00 34.97 3.71
4914 8191 4.970711 AGAACTGAATCATGGCTATGGAG 58.029 43.478 10.47 4.34 34.97 3.86
4988 8266 6.086785 AGTATCCCGTCTATTTGCTACTTC 57.913 41.667 0.00 0.00 0.00 3.01
4992 8270 5.537295 TGCTAAGTATCCCGTCTATTTGCTA 59.463 40.000 0.00 0.00 0.00 3.49
5089 8368 2.841881 GGTTGGACCAGGAACCTATGTA 59.158 50.000 6.58 0.00 38.91 2.29
5144 8424 5.013704 AGGTGTTTTTCTTTTTCCCTTGGTT 59.986 36.000 0.00 0.00 0.00 3.67
5147 8427 5.977635 AGAGGTGTTTTTCTTTTTCCCTTG 58.022 37.500 0.00 0.00 0.00 3.61
5148 8428 7.179516 TGTTAGAGGTGTTTTTCTTTTTCCCTT 59.820 33.333 0.00 0.00 0.00 3.95
5149 8429 6.666113 TGTTAGAGGTGTTTTTCTTTTTCCCT 59.334 34.615 0.00 0.00 0.00 4.20
5150 8430 6.869695 TGTTAGAGGTGTTTTTCTTTTTCCC 58.130 36.000 0.00 0.00 0.00 3.97
5151 8431 7.701078 GTCTGTTAGAGGTGTTTTTCTTTTTCC 59.299 37.037 0.00 0.00 0.00 3.13
5191 8471 2.045926 CTTTGGGGGAGCGGTCTG 60.046 66.667 15.18 0.00 0.00 3.51
5353 8633 1.210722 GAAGGGCTACTTTGGAGGAGG 59.789 57.143 0.00 0.00 40.21 4.30
5384 8664 0.443869 CTTGGTCGATTGAAGGCACG 59.556 55.000 0.00 0.00 0.00 5.34
5543 8829 5.044550 AGGTCTGGCAGAAGATAATCCTTTT 60.045 40.000 20.62 0.00 0.00 2.27
5728 9014 4.280425 TGACATTCAAAATGCCTGCTAACA 59.720 37.500 0.00 0.00 0.00 2.41
5729 9015 4.808558 TGACATTCAAAATGCCTGCTAAC 58.191 39.130 0.00 0.00 0.00 2.34
5782 9069 3.853671 CCTTTTGATGCGTCAACATAAGC 59.146 43.478 20.85 0.00 43.72 3.09
5786 9073 6.374333 AGTTATACCTTTTGATGCGTCAACAT 59.626 34.615 20.85 11.21 43.72 2.71
5802 9123 1.415289 GGGCCGCAGTTAGTTATACCT 59.585 52.381 0.00 0.00 0.00 3.08
5803 9124 1.541889 GGGGCCGCAGTTAGTTATACC 60.542 57.143 16.21 0.00 0.00 2.73
6049 9373 2.448931 ACCCACCCGAACCCTTGA 60.449 61.111 0.00 0.00 0.00 3.02
6121 9445 6.176975 AGCAATATTGTCGACGAAATTCAA 57.823 33.333 16.61 0.00 0.00 2.69
6130 9454 7.784176 ACGAATGTATAAGCAATATTGTCGAC 58.216 34.615 19.68 9.11 0.00 4.20
6151 9475 1.539388 CAGGCCATGTAAGCAAACGAA 59.461 47.619 5.01 0.00 0.00 3.85
6161 9485 5.372343 ACATCATTAAGTCAGGCCATGTA 57.628 39.130 5.01 0.00 0.00 2.29
6213 9552 4.980805 GTCACGCTGTGCCGGGAA 62.981 66.667 2.18 0.00 42.99 3.97
6355 9694 2.920912 AGACCGTTCCCGCCTTGA 60.921 61.111 0.00 0.00 0.00 3.02
6398 9740 4.373116 GAGGCGGCGGTTCTGACA 62.373 66.667 9.78 0.00 0.00 3.58
6413 9755 0.390866 AGTGGCGTCTGCTTCATGAG 60.391 55.000 0.00 0.00 42.25 2.90
6432 9774 2.356553 GGCGACGTGTTGTGCCTA 60.357 61.111 0.00 0.00 39.90 3.93
6532 9874 3.138798 GCCGTAGCTCCTCGTCCA 61.139 66.667 0.00 0.00 35.50 4.02
6540 9882 4.143333 TTGCTCCGGCCGTAGCTC 62.143 66.667 37.50 15.52 39.53 4.09
6742 10084 4.096681 TCTCTCTCACTCTCACTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
6746 10088 3.181329 TCCTCTCTCTCACTCTCACTCT 58.819 50.000 0.00 0.00 0.00 3.24
6748 10090 3.181329 TCTCCTCTCTCTCACTCTCACT 58.819 50.000 0.00 0.00 0.00 3.41
6752 10094 2.562296 ACCTCTCCTCTCTCTCACTCT 58.438 52.381 0.00 0.00 0.00 3.24
6753 10095 3.366052 AACCTCTCCTCTCTCTCACTC 57.634 52.381 0.00 0.00 0.00 3.51
6754 10096 3.430453 CAAACCTCTCCTCTCTCTCACT 58.570 50.000 0.00 0.00 0.00 3.41
6816 10158 2.352814 CGAGCCGGAAGAAGAAGAAGAA 60.353 50.000 5.05 0.00 0.00 2.52
6817 10159 1.202582 CGAGCCGGAAGAAGAAGAAGA 59.797 52.381 5.05 0.00 0.00 2.87
6875 10220 9.277783 AGAAACTAGCCAAACATATATGATGAC 57.722 33.333 19.63 9.94 0.00 3.06
6942 10289 6.016360 CCGCTATATTTCCATTCAAATCACCA 60.016 38.462 0.00 0.00 0.00 4.17
6977 10324 3.866651 AGGTGAAGAGATTGAACATCGG 58.133 45.455 0.00 0.00 0.00 4.18
6990 10337 1.000955 GCGAAGTGGAGAAGGTGAAGA 59.999 52.381 0.00 0.00 0.00 2.87
6992 10339 0.034896 GGCGAAGTGGAGAAGGTGAA 59.965 55.000 0.00 0.00 0.00 3.18
6997 10344 0.390472 GGAGTGGCGAAGTGGAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
6998 10345 1.671742 GGAGTGGCGAAGTGGAGAA 59.328 57.895 0.00 0.00 0.00 2.87
6999 10346 2.283529 GGGAGTGGCGAAGTGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
7000 10347 2.266055 GGGAGTGGCGAAGTGGAG 59.734 66.667 0.00 0.00 0.00 3.86
7002 10349 4.410400 GGGGGAGTGGCGAAGTGG 62.410 72.222 0.00 0.00 0.00 4.00
7016 10363 2.823154 TCGCAAAAATAAGTGAAGGGGG 59.177 45.455 0.00 0.00 0.00 5.40
7017 10364 4.513198 TTCGCAAAAATAAGTGAAGGGG 57.487 40.909 0.00 0.00 31.33 4.79
7018 10365 6.747280 CAGTATTCGCAAAAATAAGTGAAGGG 59.253 38.462 0.00 0.00 37.63 3.95
7019 10366 6.251376 GCAGTATTCGCAAAAATAAGTGAAGG 59.749 38.462 0.00 0.00 37.63 3.46
7020 10367 6.801377 TGCAGTATTCGCAAAAATAAGTGAAG 59.199 34.615 0.00 0.00 37.63 3.02
7021 10368 6.673106 TGCAGTATTCGCAAAAATAAGTGAA 58.327 32.000 0.00 0.00 36.17 3.18
7022 10369 6.247727 TGCAGTATTCGCAAAAATAAGTGA 57.752 33.333 0.00 0.00 36.17 3.41
7023 10370 7.510428 AATGCAGTATTCGCAAAAATAAGTG 57.490 32.000 0.00 0.00 43.84 3.16
7024 10371 9.450807 GATAATGCAGTATTCGCAAAAATAAGT 57.549 29.630 8.26 0.00 43.84 2.24
7025 10372 8.905702 GGATAATGCAGTATTCGCAAAAATAAG 58.094 33.333 8.26 0.00 43.84 1.73
7026 10373 8.629158 AGGATAATGCAGTATTCGCAAAAATAA 58.371 29.630 8.26 0.00 43.84 1.40
7027 10374 8.165239 AGGATAATGCAGTATTCGCAAAAATA 57.835 30.769 8.26 0.00 43.84 1.40
7028 10375 7.042797 AGGATAATGCAGTATTCGCAAAAAT 57.957 32.000 8.26 0.00 43.84 1.82
7029 10376 6.449635 AGGATAATGCAGTATTCGCAAAAA 57.550 33.333 8.26 0.00 43.84 1.94
7030 10377 6.449635 AAGGATAATGCAGTATTCGCAAAA 57.550 33.333 8.26 0.00 43.84 2.44
7032 10379 6.449635 AAAAGGATAATGCAGTATTCGCAA 57.550 33.333 8.26 0.00 43.84 4.85
7035 10382 6.136071 CCGAAAAAGGATAATGCAGTATTCG 58.864 40.000 8.26 12.27 36.60 3.34
7036 10383 7.027778 ACCGAAAAAGGATAATGCAGTATTC 57.972 36.000 8.26 6.20 34.73 1.75
7037 10384 7.122055 TGAACCGAAAAAGGATAATGCAGTATT 59.878 33.333 8.26 0.00 34.73 1.89
7042 10389 5.007034 TCTGAACCGAAAAAGGATAATGCA 58.993 37.500 0.00 0.00 34.73 3.96
7044 10391 7.761409 TCATTCTGAACCGAAAAAGGATAATG 58.239 34.615 0.00 0.00 34.73 1.90
7047 10394 6.371548 CACTCATTCTGAACCGAAAAAGGATA 59.628 38.462 0.00 0.00 34.73 2.59
7048 10395 5.182001 CACTCATTCTGAACCGAAAAAGGAT 59.818 40.000 0.00 0.00 34.73 3.24
7050 10397 4.320494 CCACTCATTCTGAACCGAAAAAGG 60.320 45.833 0.00 0.00 37.30 3.11
7052 10399 4.456535 TCCACTCATTCTGAACCGAAAAA 58.543 39.130 0.00 0.00 0.00 1.94
7061 10414 6.433716 TGCAACATAAATTCCACTCATTCTGA 59.566 34.615 0.00 0.00 0.00 3.27
7067 10420 3.763360 CCCTGCAACATAAATTCCACTCA 59.237 43.478 0.00 0.00 0.00 3.41
7068 10421 3.763897 ACCCTGCAACATAAATTCCACTC 59.236 43.478 0.00 0.00 0.00 3.51
7070 10423 3.509575 TCACCCTGCAACATAAATTCCAC 59.490 43.478 0.00 0.00 0.00 4.02
7077 10430 4.308526 TTGGTATCACCCTGCAACATAA 57.691 40.909 0.00 0.00 37.50 1.90
7084 10437 2.230660 GCCTATTTGGTATCACCCTGC 58.769 52.381 0.00 0.00 37.50 4.85
7085 10438 2.443255 AGGCCTATTTGGTATCACCCTG 59.557 50.000 1.29 0.00 37.50 4.45
7087 10440 3.595190 AAGGCCTATTTGGTATCACCC 57.405 47.619 5.16 0.00 37.50 4.61
7090 10443 9.346515 AGGTATTATAAGGCCTATTTGGTATCA 57.653 33.333 5.16 0.00 38.35 2.15
7092 10445 9.346515 TCAGGTATTATAAGGCCTATTTGGTAT 57.653 33.333 5.16 0.91 38.35 2.73
7094 10447 7.642094 TCAGGTATTATAAGGCCTATTTGGT 57.358 36.000 5.16 0.00 38.35 3.67
7095 10448 9.533831 AATTCAGGTATTATAAGGCCTATTTGG 57.466 33.333 5.16 0.00 39.35 3.28
7103 10458 7.012989 ACACCGAAAATTCAGGTATTATAAGGC 59.987 37.037 8.59 0.00 34.16 4.35
7109 10464 6.370442 CAGACACACCGAAAATTCAGGTATTA 59.630 38.462 8.59 0.00 34.16 0.98
7110 10465 5.181245 CAGACACACCGAAAATTCAGGTATT 59.819 40.000 8.59 0.00 34.16 1.89
7125 10480 1.510480 GACAAGCTGCCAGACACACC 61.510 60.000 0.00 0.00 0.00 4.16
7133 10488 0.036164 ATGGTAACGACAAGCTGCCA 59.964 50.000 0.00 0.00 42.51 4.92
7138 10493 2.919666 ATGCAATGGTAACGACAAGC 57.080 45.000 0.00 0.00 42.51 4.01
7140 10495 4.277174 AGTCAAATGCAATGGTAACGACAA 59.723 37.500 0.00 0.00 42.51 3.18
7172 10527 9.449719 GTTGGAAGGTTCTCTTGATTAAAGATA 57.550 33.333 0.00 0.00 44.02 1.98
7173 10528 7.944554 TGTTGGAAGGTTCTCTTGATTAAAGAT 59.055 33.333 0.00 0.00 44.02 2.40
7174 10529 7.287061 TGTTGGAAGGTTCTCTTGATTAAAGA 58.713 34.615 0.00 0.00 42.83 2.52
7175 10530 7.510549 TGTTGGAAGGTTCTCTTGATTAAAG 57.489 36.000 0.00 0.00 35.50 1.85
7176 10531 7.889873 TTGTTGGAAGGTTCTCTTGATTAAA 57.110 32.000 0.00 0.00 35.50 1.52
7177 10532 7.723616 TCATTGTTGGAAGGTTCTCTTGATTAA 59.276 33.333 0.00 0.00 35.50 1.40
7178 10533 7.230747 TCATTGTTGGAAGGTTCTCTTGATTA 58.769 34.615 0.00 0.00 35.50 1.75
7179 10534 6.070656 TCATTGTTGGAAGGTTCTCTTGATT 58.929 36.000 0.00 0.00 35.50 2.57
7180 10535 5.634118 TCATTGTTGGAAGGTTCTCTTGAT 58.366 37.500 0.00 0.00 35.50 2.57
7181 10536 5.047566 TCATTGTTGGAAGGTTCTCTTGA 57.952 39.130 0.00 0.00 35.50 3.02
7182 10537 5.766222 CTTCATTGTTGGAAGGTTCTCTTG 58.234 41.667 0.00 0.00 38.44 3.02
7192 10547 3.611025 ACCCTTCCTTCATTGTTGGAA 57.389 42.857 10.81 10.81 38.10 3.53
7193 10548 3.611025 AACCCTTCCTTCATTGTTGGA 57.389 42.857 0.00 0.00 0.00 3.53
7194 10549 3.509967 GGTAACCCTTCCTTCATTGTTGG 59.490 47.826 0.00 0.00 0.00 3.77
7195 10550 4.783764 GGTAACCCTTCCTTCATTGTTG 57.216 45.455 0.00 0.00 0.00 3.33
7239 10594 8.368060 TCGCTTTCGTTATAAGACCACTAATGG 61.368 40.741 0.00 0.00 43.61 3.16
7240 10595 6.474427 TCGCTTTCGTTATAAGACCACTAATG 59.526 38.462 0.00 0.00 36.96 1.90
7241 10596 6.567050 TCGCTTTCGTTATAAGACCACTAAT 58.433 36.000 0.00 0.00 36.96 1.73
7242 10597 5.953183 TCGCTTTCGTTATAAGACCACTAA 58.047 37.500 0.00 0.00 36.96 2.24
7243 10598 5.565592 TCGCTTTCGTTATAAGACCACTA 57.434 39.130 0.00 0.00 36.96 2.74
7244 10599 4.445452 TCGCTTTCGTTATAAGACCACT 57.555 40.909 0.00 0.00 36.96 4.00
7245 10600 4.201656 GGTTCGCTTTCGTTATAAGACCAC 60.202 45.833 0.00 0.00 36.96 4.16
7246 10601 3.928375 GGTTCGCTTTCGTTATAAGACCA 59.072 43.478 0.00 0.00 36.96 4.02
7247 10602 3.928375 TGGTTCGCTTTCGTTATAAGACC 59.072 43.478 0.00 0.00 36.96 3.85
7248 10603 5.520022 TTGGTTCGCTTTCGTTATAAGAC 57.480 39.130 0.00 0.00 36.96 3.01
7249 10604 5.466058 TGTTTGGTTCGCTTTCGTTATAAGA 59.534 36.000 0.00 0.00 36.96 2.10
7250 10605 5.681880 TGTTTGGTTCGCTTTCGTTATAAG 58.318 37.500 0.00 0.00 36.96 1.73
7251 10606 5.466058 TCTGTTTGGTTCGCTTTCGTTATAA 59.534 36.000 0.00 0.00 36.96 0.98
7252 10607 4.989797 TCTGTTTGGTTCGCTTTCGTTATA 59.010 37.500 0.00 0.00 36.96 0.98
7253 10608 3.810941 TCTGTTTGGTTCGCTTTCGTTAT 59.189 39.130 0.00 0.00 36.96 1.89
7254 10609 3.001533 GTCTGTTTGGTTCGCTTTCGTTA 59.998 43.478 0.00 0.00 36.96 3.18
7255 10610 2.011222 TCTGTTTGGTTCGCTTTCGTT 58.989 42.857 0.00 0.00 36.96 3.85
7256 10611 1.329599 GTCTGTTTGGTTCGCTTTCGT 59.670 47.619 0.00 0.00 36.96 3.85
7257 10612 1.329292 TGTCTGTTTGGTTCGCTTTCG 59.671 47.619 0.00 0.00 0.00 3.46
7258 10613 3.414549 TTGTCTGTTTGGTTCGCTTTC 57.585 42.857 0.00 0.00 0.00 2.62
7259 10614 3.859411 TTTGTCTGTTTGGTTCGCTTT 57.141 38.095 0.00 0.00 0.00 3.51
7260 10615 3.442273 TCTTTTGTCTGTTTGGTTCGCTT 59.558 39.130 0.00 0.00 0.00 4.68
7261 10616 3.013921 TCTTTTGTCTGTTTGGTTCGCT 58.986 40.909 0.00 0.00 0.00 4.93
7262 10617 3.363178 CTCTTTTGTCTGTTTGGTTCGC 58.637 45.455 0.00 0.00 0.00 4.70
7263 10618 3.625764 TCCTCTTTTGTCTGTTTGGTTCG 59.374 43.478 0.00 0.00 0.00 3.95
7264 10619 5.576447 TTCCTCTTTTGTCTGTTTGGTTC 57.424 39.130 0.00 0.00 0.00 3.62
7265 10620 5.245075 TGTTTCCTCTTTTGTCTGTTTGGTT 59.755 36.000 0.00 0.00 0.00 3.67
7266 10621 4.770010 TGTTTCCTCTTTTGTCTGTTTGGT 59.230 37.500 0.00 0.00 0.00 3.67
7267 10622 5.102313 GTGTTTCCTCTTTTGTCTGTTTGG 58.898 41.667 0.00 0.00 0.00 3.28
7268 10623 4.793216 CGTGTTTCCTCTTTTGTCTGTTTG 59.207 41.667 0.00 0.00 0.00 2.93
7269 10624 4.674362 GCGTGTTTCCTCTTTTGTCTGTTT 60.674 41.667 0.00 0.00 0.00 2.83
7270 10625 3.181500 GCGTGTTTCCTCTTTTGTCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
7271 10626 2.354821 GCGTGTTTCCTCTTTTGTCTGT 59.645 45.455 0.00 0.00 0.00 3.41
7272 10627 2.614057 AGCGTGTTTCCTCTTTTGTCTG 59.386 45.455 0.00 0.00 0.00 3.51
7273 10628 2.614057 CAGCGTGTTTCCTCTTTTGTCT 59.386 45.455 0.00 0.00 0.00 3.41
7274 10629 2.287009 CCAGCGTGTTTCCTCTTTTGTC 60.287 50.000 0.00 0.00 0.00 3.18
7275 10630 1.676006 CCAGCGTGTTTCCTCTTTTGT 59.324 47.619 0.00 0.00 0.00 2.83
7276 10631 1.946768 TCCAGCGTGTTTCCTCTTTTG 59.053 47.619 0.00 0.00 0.00 2.44
7277 10632 2.222027 CTCCAGCGTGTTTCCTCTTTT 58.778 47.619 0.00 0.00 0.00 2.27
7278 10633 1.884235 CTCCAGCGTGTTTCCTCTTT 58.116 50.000 0.00 0.00 0.00 2.52
7279 10634 0.603975 GCTCCAGCGTGTTTCCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
7280 10635 1.004440 GCTCCAGCGTGTTTCCTCT 60.004 57.895 0.00 0.00 0.00 3.69
7281 10636 2.035442 GGCTCCAGCGTGTTTCCTC 61.035 63.158 0.00 0.00 43.26 3.71
7282 10637 2.032681 GGCTCCAGCGTGTTTCCT 59.967 61.111 0.00 0.00 43.26 3.36
7283 10638 2.032681 AGGCTCCAGCGTGTTTCC 59.967 61.111 0.00 0.00 43.26 3.13
7289 10644 2.659610 GTCTTCAGGCTCCAGCGT 59.340 61.111 0.00 0.00 43.26 5.07
7290 10645 2.125350 GGTCTTCAGGCTCCAGCG 60.125 66.667 0.00 0.00 43.26 5.18
7291 10646 2.270527 GGGTCTTCAGGCTCCAGC 59.729 66.667 0.00 0.00 41.14 4.85
7292 10647 1.601171 CTGGGTCTTCAGGCTCCAG 59.399 63.158 3.57 3.57 38.96 3.86
7293 10648 2.596851 GCTGGGTCTTCAGGCTCCA 61.597 63.158 0.00 0.00 35.43 3.86
7294 10649 1.919600 ATGCTGGGTCTTCAGGCTCC 61.920 60.000 0.00 0.00 35.43 4.70
7295 10650 0.833287 TATGCTGGGTCTTCAGGCTC 59.167 55.000 0.00 0.00 35.43 4.70
7296 10651 0.543749 GTATGCTGGGTCTTCAGGCT 59.456 55.000 0.00 0.00 35.43 4.58
7297 10652 0.543749 AGTATGCTGGGTCTTCAGGC 59.456 55.000 0.00 0.00 35.43 4.85
7298 10653 1.833630 TCAGTATGCTGGGTCTTCAGG 59.166 52.381 11.15 0.00 42.78 3.86
7299 10654 3.265791 GTTCAGTATGCTGGGTCTTCAG 58.734 50.000 11.15 0.00 42.78 3.02
7300 10655 2.027192 GGTTCAGTATGCTGGGTCTTCA 60.027 50.000 11.15 0.00 42.78 3.02
7301 10656 2.027192 TGGTTCAGTATGCTGGGTCTTC 60.027 50.000 11.15 0.00 42.78 2.87
7302 10657 1.985159 TGGTTCAGTATGCTGGGTCTT 59.015 47.619 11.15 0.00 42.78 3.01
7303 10658 1.556911 CTGGTTCAGTATGCTGGGTCT 59.443 52.381 11.15 0.00 42.78 3.85
7304 10659 2.014068 GCTGGTTCAGTATGCTGGGTC 61.014 57.143 11.15 2.19 42.78 4.46
7305 10660 0.035056 GCTGGTTCAGTATGCTGGGT 60.035 55.000 11.15 0.00 42.78 4.51
7306 10661 1.091771 CGCTGGTTCAGTATGCTGGG 61.092 60.000 11.15 0.00 42.78 4.45
7307 10662 1.091771 CCGCTGGTTCAGTATGCTGG 61.092 60.000 11.15 0.00 42.78 4.85
7308 10663 1.091771 CCCGCTGGTTCAGTATGCTG 61.092 60.000 4.14 4.14 43.87 4.41
7309 10664 1.221840 CCCGCTGGTTCAGTATGCT 59.778 57.895 0.00 0.00 34.76 3.79
7310 10665 1.819632 CCCCGCTGGTTCAGTATGC 60.820 63.158 0.00 0.00 34.76 3.14
7311 10666 0.462047 GTCCCCGCTGGTTCAGTATG 60.462 60.000 0.00 0.00 33.43 2.39
7312 10667 0.907704 TGTCCCCGCTGGTTCAGTAT 60.908 55.000 0.00 0.00 33.43 2.12
7313 10668 1.122632 TTGTCCCCGCTGGTTCAGTA 61.123 55.000 0.00 0.00 33.43 2.74
7314 10669 2.397413 CTTGTCCCCGCTGGTTCAGT 62.397 60.000 0.00 0.00 33.43 3.41
7315 10670 1.672356 CTTGTCCCCGCTGGTTCAG 60.672 63.158 0.00 0.00 34.77 3.02
7316 10671 2.429930 CTTGTCCCCGCTGGTTCA 59.570 61.111 0.00 0.00 34.77 3.18
7317 10672 3.056328 GCTTGTCCCCGCTGGTTC 61.056 66.667 0.00 0.00 34.77 3.62
7318 10673 4.660938 GGCTTGTCCCCGCTGGTT 62.661 66.667 0.00 0.00 34.77 3.67
7338 10693 3.202151 TGGAGGTTGTTTCAGAGGTTCTT 59.798 43.478 0.00 0.00 0.00 2.52
7339 10694 2.777692 TGGAGGTTGTTTCAGAGGTTCT 59.222 45.455 0.00 0.00 0.00 3.01
7340 10695 2.879026 GTGGAGGTTGTTTCAGAGGTTC 59.121 50.000 0.00 0.00 0.00 3.62
7374 10731 9.330063 CAGATGCTATCCTCTATCTTAGTCTAG 57.670 40.741 0.00 0.00 0.00 2.43
7375 10732 9.052365 TCAGATGCTATCCTCTATCTTAGTCTA 57.948 37.037 0.00 0.00 0.00 2.59
7408 10897 6.295292 GCCTGTTCTTTAATCAATTCTTGGGT 60.295 38.462 0.00 0.00 0.00 4.51
7436 10925 8.068892 ACTTGACCCTTTTGTAATTGTTTACA 57.931 30.769 0.00 0.00 44.57 2.41
7439 10928 7.977293 GTGTACTTGACCCTTTTGTAATTGTTT 59.023 33.333 0.00 0.00 0.00 2.83
7462 10951 0.464036 TGTTCTGAACGCAGGAGTGT 59.536 50.000 15.18 0.00 42.53 3.55
7475 10964 7.254252 GGAACTGTCGAAATGATATCTGTTCTG 60.254 40.741 3.98 4.91 33.43 3.02
7477 10966 6.535150 TGGAACTGTCGAAATGATATCTGTTC 59.465 38.462 3.98 6.58 32.77 3.18
7512 11001 4.000988 CAGTTGGTATTTCGGCTGTAACT 58.999 43.478 0.00 0.00 0.00 2.24
7521 11010 5.856126 TGCTAGTTTCAGTTGGTATTTCG 57.144 39.130 0.00 0.00 0.00 3.46
7545 11034 5.123820 TGCGCAGTTTAGCAAAGATAAGAAT 59.876 36.000 5.66 0.00 40.78 2.40
7557 11046 0.730494 CTTGGCTTGCGCAGTTTAGC 60.730 55.000 20.84 20.84 38.10 3.09
7566 11055 5.222631 ACTTTATTTTCTTCTTGGCTTGCG 58.777 37.500 0.00 0.00 0.00 4.85
7584 11073 9.444600 GTACCTCCTGATAATGTGAAAACTTTA 57.555 33.333 0.00 0.00 0.00 1.85
7585 11074 8.164070 AGTACCTCCTGATAATGTGAAAACTTT 58.836 33.333 0.00 0.00 0.00 2.66
7595 11084 4.322080 TTGCGAGTACCTCCTGATAATG 57.678 45.455 0.00 0.00 0.00 1.90
7603 11092 3.938963 TCATTCAATTTGCGAGTACCTCC 59.061 43.478 0.00 0.00 0.00 4.30
7620 11109 6.371548 TGTGGAGCTTACTACAATGTTCATTC 59.628 38.462 0.00 0.00 38.93 2.67
7632 11121 3.244422 CCAGGTTTGTGTGGAGCTTACTA 60.244 47.826 0.00 0.00 35.67 1.82
7634 11123 1.880027 CCAGGTTTGTGTGGAGCTTAC 59.120 52.381 0.00 0.00 35.67 2.34
7690 11181 2.480419 GTCTTTTGTGGTCGTGATGAGG 59.520 50.000 0.00 0.00 0.00 3.86
7691 11182 3.059597 GTGTCTTTTGTGGTCGTGATGAG 60.060 47.826 0.00 0.00 0.00 2.90
7711 11202 5.584649 AGATGGAATGGTAATACGTGTTGTG 59.415 40.000 7.91 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.