Multiple sequence alignment - TraesCS7A01G525000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G525000 chr7A 100.000 3398 0 0 1 3398 707669872 707673269 0 6276
1 TraesCS7A01G525000 chr7A 99.009 2825 26 2 575 3398 13133461 13130638 0 5060
2 TraesCS7A01G525000 chr7A 98.639 588 6 2 1 588 707653760 707654345 0 1040
3 TraesCS7A01G525000 chr7A 98.639 588 6 2 1 588 710636381 710635796 0 1040
4 TraesCS7A01G525000 chr7A 97.647 595 11 3 1 595 5379881 5380472 0 1018
5 TraesCS7A01G525000 chr7A 97.959 588 10 2 1 588 710627256 710626671 0 1018
6 TraesCS7A01G525000 chr7A 97.959 588 10 2 1 588 710643366 710642781 0 1018
7 TraesCS7A01G525000 chr7A 97.479 595 12 3 1 595 727943762 727943171 0 1013
8 TraesCS7A01G525000 chr5A 99.078 2821 26 0 578 3398 44279441 44276621 0 5066
9 TraesCS7A01G525000 chrUn 98.866 2821 31 1 579 3398 8808795 8805975 0 5031
10 TraesCS7A01G525000 chr7B 98.759 2821 32 3 578 3398 714452957 714450140 0 5012
11 TraesCS7A01G525000 chr3B 98.759 2820 29 1 579 3398 60270841 60273654 0 5009
12 TraesCS7A01G525000 chr2A 98.333 2820 41 2 579 3398 734935070 734932257 0 4942
13 TraesCS7A01G525000 chr2A 97.521 2824 57 6 579 3398 2768049 2765235 0 4815
14 TraesCS7A01G525000 chr2A 88.065 1793 139 38 1661 3398 38527852 38526080 0 2056
15 TraesCS7A01G525000 chr6B 97.733 2823 52 5 579 3398 704743237 704746050 0 4848
16 TraesCS7A01G525000 chr4B 97.376 2820 41 6 579 3398 621762622 621759836 0 4767
17 TraesCS7A01G525000 chr3A 97.647 595 11 3 1 595 663210615 663211206 0 1018
18 TraesCS7A01G525000 chr6A 97.479 595 12 3 1 595 222531132 222531723 0 1013
19 TraesCS7A01G525000 chr6A 97.311 595 13 3 1 595 67616357 67616948 0 1007


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G525000 chr7A 707669872 707673269 3397 False 6276 6276 100.000 1 3398 1 chr7A.!!$F3 3397
1 TraesCS7A01G525000 chr7A 13130638 13133461 2823 True 5060 5060 99.009 575 3398 1 chr7A.!!$R1 2823
2 TraesCS7A01G525000 chr7A 707653760 707654345 585 False 1040 1040 98.639 1 588 1 chr7A.!!$F2 587
3 TraesCS7A01G525000 chr7A 710635796 710636381 585 True 1040 1040 98.639 1 588 1 chr7A.!!$R3 587
4 TraesCS7A01G525000 chr7A 5379881 5380472 591 False 1018 1018 97.647 1 595 1 chr7A.!!$F1 594
5 TraesCS7A01G525000 chr7A 710626671 710627256 585 True 1018 1018 97.959 1 588 1 chr7A.!!$R2 587
6 TraesCS7A01G525000 chr7A 710642781 710643366 585 True 1018 1018 97.959 1 588 1 chr7A.!!$R4 587
7 TraesCS7A01G525000 chr7A 727943171 727943762 591 True 1013 1013 97.479 1 595 1 chr7A.!!$R5 594
8 TraesCS7A01G525000 chr5A 44276621 44279441 2820 True 5066 5066 99.078 578 3398 1 chr5A.!!$R1 2820
9 TraesCS7A01G525000 chrUn 8805975 8808795 2820 True 5031 5031 98.866 579 3398 1 chrUn.!!$R1 2819
10 TraesCS7A01G525000 chr7B 714450140 714452957 2817 True 5012 5012 98.759 578 3398 1 chr7B.!!$R1 2820
11 TraesCS7A01G525000 chr3B 60270841 60273654 2813 False 5009 5009 98.759 579 3398 1 chr3B.!!$F1 2819
12 TraesCS7A01G525000 chr2A 734932257 734935070 2813 True 4942 4942 98.333 579 3398 1 chr2A.!!$R3 2819
13 TraesCS7A01G525000 chr2A 2765235 2768049 2814 True 4815 4815 97.521 579 3398 1 chr2A.!!$R1 2819
14 TraesCS7A01G525000 chr2A 38526080 38527852 1772 True 2056 2056 88.065 1661 3398 1 chr2A.!!$R2 1737
15 TraesCS7A01G525000 chr6B 704743237 704746050 2813 False 4848 4848 97.733 579 3398 1 chr6B.!!$F1 2819
16 TraesCS7A01G525000 chr4B 621759836 621762622 2786 True 4767 4767 97.376 579 3398 1 chr4B.!!$R1 2819
17 TraesCS7A01G525000 chr3A 663210615 663211206 591 False 1018 1018 97.647 1 595 1 chr3A.!!$F1 594
18 TraesCS7A01G525000 chr6A 222531132 222531723 591 False 1013 1013 97.479 1 595 1 chr6A.!!$F2 594
19 TraesCS7A01G525000 chr6A 67616357 67616948 591 False 1007 1007 97.311 1 595 1 chr6A.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.039798 TAACGATATCCGCCACGAGC 60.040 55.0 0.0 0.0 43.32 5.03 F
410 411 0.096454 GAGGCACGGTTCGCAAATAC 59.904 55.0 0.0 0.0 0.00 1.89 F
413 414 0.238817 GCACGGTTCGCAAATACCAA 59.761 50.0 0.0 0.0 33.94 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1599 9.321562 CTGTTCTTTTTCAGTTAACACCTACTA 57.678 33.333 8.61 0.0 0.0 1.82 R
2365 2412 2.725221 ATTGCCTTGATCCTCTCCAC 57.275 50.000 0.00 0.0 0.0 4.02 R
2445 2492 1.314534 TGCATGACATTCCAAGGCCG 61.315 55.000 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 6.268617 TCAAATATTCTCCTCCACGATCAGAT 59.731 38.462 0.00 0.00 0.00 2.90
131 132 5.913137 ATATTCTCCTCCACGATCAGATC 57.087 43.478 0.00 0.00 0.00 2.75
169 170 9.965824 ATTTTCTTGTTACGATGATTTTCAACT 57.034 25.926 0.00 0.00 0.00 3.16
170 171 9.796120 TTTTCTTGTTACGATGATTTTCAACTT 57.204 25.926 0.00 0.00 0.00 2.66
171 172 9.445786 TTTCTTGTTACGATGATTTTCAACTTC 57.554 29.630 0.00 0.00 0.00 3.01
172 173 8.148807 TCTTGTTACGATGATTTTCAACTTCA 57.851 30.769 0.00 0.00 0.00 3.02
173 174 8.067784 TCTTGTTACGATGATTTTCAACTTCAC 58.932 33.333 0.00 0.00 0.00 3.18
174 175 7.490962 TGTTACGATGATTTTCAACTTCACT 57.509 32.000 0.00 0.00 0.00 3.41
175 176 7.572759 TGTTACGATGATTTTCAACTTCACTC 58.427 34.615 0.00 0.00 0.00 3.51
176 177 7.441157 TGTTACGATGATTTTCAACTTCACTCT 59.559 33.333 0.00 0.00 0.00 3.24
177 178 6.233430 ACGATGATTTTCAACTTCACTCTG 57.767 37.500 0.00 0.00 0.00 3.35
178 179 5.991606 ACGATGATTTTCAACTTCACTCTGA 59.008 36.000 0.00 0.00 0.00 3.27
179 180 6.483307 ACGATGATTTTCAACTTCACTCTGAA 59.517 34.615 0.00 0.00 34.79 3.02
180 181 7.012327 ACGATGATTTTCAACTTCACTCTGAAA 59.988 33.333 0.00 0.00 35.73 2.69
181 182 8.019669 CGATGATTTTCAACTTCACTCTGAAAT 58.980 33.333 0.00 0.00 38.49 2.17
182 183 9.688592 GATGATTTTCAACTTCACTCTGAAATT 57.311 29.630 0.00 0.00 38.49 1.82
183 184 9.688592 ATGATTTTCAACTTCACTCTGAAATTC 57.311 29.630 9.86 9.86 38.49 2.17
184 185 8.906867 TGATTTTCAACTTCACTCTGAAATTCT 58.093 29.630 14.62 0.08 38.49 2.40
185 186 9.741647 GATTTTCAACTTCACTCTGAAATTCTT 57.258 29.630 9.64 0.00 38.49 2.52
187 188 8.915871 TTTCAACTTCACTCTGAAATTCTTTG 57.084 30.769 0.00 0.00 35.73 2.77
188 189 7.864108 TCAACTTCACTCTGAAATTCTTTGA 57.136 32.000 0.00 0.00 35.73 2.69
189 190 8.279970 TCAACTTCACTCTGAAATTCTTTGAA 57.720 30.769 0.00 0.00 35.73 2.69
190 191 8.184192 TCAACTTCACTCTGAAATTCTTTGAAC 58.816 33.333 0.00 0.00 35.73 3.18
191 192 7.872113 ACTTCACTCTGAAATTCTTTGAACT 57.128 32.000 0.00 0.00 35.73 3.01
192 193 8.286191 ACTTCACTCTGAAATTCTTTGAACTT 57.714 30.769 0.00 0.00 35.73 2.66
193 194 8.743714 ACTTCACTCTGAAATTCTTTGAACTTT 58.256 29.630 0.00 0.00 35.73 2.66
194 195 9.578439 CTTCACTCTGAAATTCTTTGAACTTTT 57.422 29.630 0.00 0.00 35.73 2.27
195 196 9.573133 TTCACTCTGAAATTCTTTGAACTTTTC 57.427 29.630 0.00 0.00 32.71 2.29
196 197 8.739039 TCACTCTGAAATTCTTTGAACTTTTCA 58.261 29.630 0.00 8.07 38.04 2.69
242 243 8.900781 TCATTAAGTAGATATACCCGTATCTGC 58.099 37.037 6.67 5.55 40.64 4.26
247 248 8.874744 AGTAGATATACCCGTATCTGCTTAAA 57.125 34.615 8.19 0.00 45.74 1.52
248 249 9.476928 AGTAGATATACCCGTATCTGCTTAAAT 57.523 33.333 8.19 0.00 45.74 1.40
249 250 9.733219 GTAGATATACCCGTATCTGCTTAAATC 57.267 37.037 6.67 0.00 40.64 2.17
250 251 8.362464 AGATATACCCGTATCTGCTTAAATCA 57.638 34.615 0.00 0.00 39.37 2.57
251 252 8.982723 AGATATACCCGTATCTGCTTAAATCAT 58.017 33.333 0.00 0.00 39.37 2.45
252 253 9.250624 GATATACCCGTATCTGCTTAAATCATC 57.749 37.037 0.00 0.00 0.00 2.92
253 254 5.552870 ACCCGTATCTGCTTAAATCATCT 57.447 39.130 0.00 0.00 0.00 2.90
254 255 5.300752 ACCCGTATCTGCTTAAATCATCTG 58.699 41.667 0.00 0.00 0.00 2.90
255 256 5.163301 ACCCGTATCTGCTTAAATCATCTGT 60.163 40.000 0.00 0.00 0.00 3.41
256 257 5.178252 CCCGTATCTGCTTAAATCATCTGTG 59.822 44.000 0.00 0.00 0.00 3.66
257 258 5.985530 CCGTATCTGCTTAAATCATCTGTGA 59.014 40.000 0.00 0.00 39.04 3.58
258 259 6.479990 CCGTATCTGCTTAAATCATCTGTGAA 59.520 38.462 0.00 0.00 38.01 3.18
259 260 7.307042 CCGTATCTGCTTAAATCATCTGTGAAG 60.307 40.741 0.00 0.00 38.01 3.02
260 261 6.939132 ATCTGCTTAAATCATCTGTGAAGG 57.061 37.500 0.00 0.00 38.01 3.46
261 262 5.809001 TCTGCTTAAATCATCTGTGAAGGT 58.191 37.500 0.00 0.00 38.01 3.50
262 263 5.645067 TCTGCTTAAATCATCTGTGAAGGTG 59.355 40.000 0.00 0.00 38.01 4.00
263 264 5.559770 TGCTTAAATCATCTGTGAAGGTGA 58.440 37.500 0.00 0.00 38.01 4.02
264 265 5.645067 TGCTTAAATCATCTGTGAAGGTGAG 59.355 40.000 0.00 0.00 38.01 3.51
265 266 5.877012 GCTTAAATCATCTGTGAAGGTGAGA 59.123 40.000 0.00 0.00 38.01 3.27
266 267 6.372659 GCTTAAATCATCTGTGAAGGTGAGAA 59.627 38.462 0.00 0.00 38.01 2.87
267 268 7.094634 GCTTAAATCATCTGTGAAGGTGAGAAA 60.095 37.037 0.00 0.00 38.01 2.52
268 269 8.690203 TTAAATCATCTGTGAAGGTGAGAAAA 57.310 30.769 0.00 0.00 38.01 2.29
269 270 7.771927 AAATCATCTGTGAAGGTGAGAAAAT 57.228 32.000 0.00 0.00 38.01 1.82
270 271 8.868522 AAATCATCTGTGAAGGTGAGAAAATA 57.131 30.769 0.00 0.00 38.01 1.40
271 272 8.868522 AATCATCTGTGAAGGTGAGAAAATAA 57.131 30.769 0.00 0.00 38.01 1.40
272 273 7.672983 TCATCTGTGAAGGTGAGAAAATAAC 57.327 36.000 0.00 0.00 0.00 1.89
273 274 6.368791 TCATCTGTGAAGGTGAGAAAATAACG 59.631 38.462 0.00 0.00 0.00 3.18
274 275 5.849510 TCTGTGAAGGTGAGAAAATAACGA 58.150 37.500 0.00 0.00 0.00 3.85
275 276 6.464222 TCTGTGAAGGTGAGAAAATAACGAT 58.536 36.000 0.00 0.00 0.00 3.73
276 277 7.608153 TCTGTGAAGGTGAGAAAATAACGATA 58.392 34.615 0.00 0.00 0.00 2.92
277 278 8.258007 TCTGTGAAGGTGAGAAAATAACGATAT 58.742 33.333 0.00 0.00 0.00 1.63
278 279 8.420374 TGTGAAGGTGAGAAAATAACGATATC 57.580 34.615 0.00 0.00 0.00 1.63
279 280 7.494625 TGTGAAGGTGAGAAAATAACGATATCC 59.505 37.037 0.00 0.00 0.00 2.59
280 281 6.700081 TGAAGGTGAGAAAATAACGATATCCG 59.300 38.462 0.00 0.00 45.44 4.18
281 282 4.989168 AGGTGAGAAAATAACGATATCCGC 59.011 41.667 0.00 0.00 43.32 5.54
282 283 4.151867 GGTGAGAAAATAACGATATCCGCC 59.848 45.833 0.00 0.00 43.32 6.13
283 284 4.748102 GTGAGAAAATAACGATATCCGCCA 59.252 41.667 0.00 0.00 43.32 5.69
284 285 4.748102 TGAGAAAATAACGATATCCGCCAC 59.252 41.667 0.00 0.00 43.32 5.01
285 286 3.739300 AGAAAATAACGATATCCGCCACG 59.261 43.478 0.00 0.00 43.32 4.94
286 287 3.374220 AAATAACGATATCCGCCACGA 57.626 42.857 0.00 0.00 43.32 4.35
287 288 2.631418 ATAACGATATCCGCCACGAG 57.369 50.000 0.00 0.00 43.32 4.18
288 289 0.039798 TAACGATATCCGCCACGAGC 60.040 55.000 0.00 0.00 43.32 5.03
289 290 2.430921 CGATATCCGCCACGAGCC 60.431 66.667 0.00 0.00 38.78 4.70
290 291 2.920645 CGATATCCGCCACGAGCCT 61.921 63.158 0.00 0.00 38.78 4.58
291 292 1.080434 GATATCCGCCACGAGCCTC 60.080 63.158 0.00 0.00 38.78 4.70
292 293 1.806461 GATATCCGCCACGAGCCTCA 61.806 60.000 0.00 0.00 38.78 3.86
293 294 1.399744 ATATCCGCCACGAGCCTCAA 61.400 55.000 0.00 0.00 38.78 3.02
294 295 1.399744 TATCCGCCACGAGCCTCAAT 61.400 55.000 0.00 0.00 38.78 2.57
295 296 1.399744 ATCCGCCACGAGCCTCAATA 61.400 55.000 0.00 0.00 38.78 1.90
296 297 1.069765 CCGCCACGAGCCTCAATAT 59.930 57.895 0.00 0.00 38.78 1.28
297 298 0.532862 CCGCCACGAGCCTCAATATT 60.533 55.000 0.00 0.00 38.78 1.28
298 299 0.861837 CGCCACGAGCCTCAATATTC 59.138 55.000 0.00 0.00 38.78 1.75
299 300 1.806247 CGCCACGAGCCTCAATATTCA 60.806 52.381 0.00 0.00 38.78 2.57
300 301 2.498167 GCCACGAGCCTCAATATTCAT 58.502 47.619 0.00 0.00 34.35 2.57
301 302 2.481952 GCCACGAGCCTCAATATTCATC 59.518 50.000 0.00 0.00 34.35 2.92
302 303 2.733552 CCACGAGCCTCAATATTCATCG 59.266 50.000 0.00 0.00 35.00 3.84
303 304 2.733552 CACGAGCCTCAATATTCATCGG 59.266 50.000 0.00 0.00 33.25 4.18
304 305 2.628178 ACGAGCCTCAATATTCATCGGA 59.372 45.455 0.00 0.00 33.25 4.55
305 306 2.989840 CGAGCCTCAATATTCATCGGAC 59.010 50.000 0.00 0.00 0.00 4.79
306 307 3.330267 GAGCCTCAATATTCATCGGACC 58.670 50.000 0.00 0.00 0.00 4.46
307 308 2.705658 AGCCTCAATATTCATCGGACCA 59.294 45.455 0.00 0.00 0.00 4.02
308 309 2.808543 GCCTCAATATTCATCGGACCAC 59.191 50.000 0.00 0.00 0.00 4.16
309 310 3.744214 GCCTCAATATTCATCGGACCACA 60.744 47.826 0.00 0.00 0.00 4.17
310 311 4.645535 CCTCAATATTCATCGGACCACAT 58.354 43.478 0.00 0.00 0.00 3.21
311 312 5.793817 CCTCAATATTCATCGGACCACATA 58.206 41.667 0.00 0.00 0.00 2.29
312 313 5.639506 CCTCAATATTCATCGGACCACATAC 59.360 44.000 0.00 0.00 0.00 2.39
313 314 6.168270 TCAATATTCATCGGACCACATACA 57.832 37.500 0.00 0.00 0.00 2.29
314 315 6.768483 TCAATATTCATCGGACCACATACAT 58.232 36.000 0.00 0.00 0.00 2.29
315 316 6.873605 TCAATATTCATCGGACCACATACATC 59.126 38.462 0.00 0.00 0.00 3.06
316 317 4.963318 ATTCATCGGACCACATACATCT 57.037 40.909 0.00 0.00 0.00 2.90
317 318 3.733443 TCATCGGACCACATACATCTG 57.267 47.619 0.00 0.00 0.00 2.90
318 319 3.031013 TCATCGGACCACATACATCTGT 58.969 45.455 0.00 0.00 0.00 3.41
319 320 4.211920 TCATCGGACCACATACATCTGTA 58.788 43.478 0.00 0.00 34.67 2.74
320 321 4.832823 TCATCGGACCACATACATCTGTAT 59.167 41.667 0.00 0.00 41.58 2.29
336 337 8.806429 ACATCTGTATGTATGATTTCCAACAA 57.194 30.769 0.00 0.00 44.66 2.83
337 338 9.241919 ACATCTGTATGTATGATTTCCAACAAA 57.758 29.630 0.00 0.00 44.66 2.83
340 341 9.685276 TCTGTATGTATGATTTCCAACAAATCT 57.315 29.630 8.21 0.00 37.50 2.40
341 342 9.726232 CTGTATGTATGATTTCCAACAAATCTG 57.274 33.333 8.21 0.00 37.50 2.90
342 343 9.241919 TGTATGTATGATTTCCAACAAATCTGT 57.758 29.630 8.21 1.52 37.50 3.41
353 354 3.777106 ACAAATCTGTTGCTCTCTCCA 57.223 42.857 0.00 0.00 28.57 3.86
354 355 4.298103 ACAAATCTGTTGCTCTCTCCAT 57.702 40.909 0.00 0.00 28.57 3.41
355 356 5.426689 ACAAATCTGTTGCTCTCTCCATA 57.573 39.130 0.00 0.00 28.57 2.74
356 357 5.426504 ACAAATCTGTTGCTCTCTCCATAG 58.573 41.667 0.00 0.00 28.57 2.23
357 358 5.046014 ACAAATCTGTTGCTCTCTCCATAGT 60.046 40.000 0.00 0.00 28.57 2.12
358 359 6.155221 ACAAATCTGTTGCTCTCTCCATAGTA 59.845 38.462 0.00 0.00 28.57 1.82
359 360 5.782893 ATCTGTTGCTCTCTCCATAGTAC 57.217 43.478 0.00 0.00 0.00 2.73
360 361 3.954904 TCTGTTGCTCTCTCCATAGTACC 59.045 47.826 0.00 0.00 0.00 3.34
361 362 2.688446 TGTTGCTCTCTCCATAGTACCG 59.312 50.000 0.00 0.00 0.00 4.02
362 363 1.982660 TGCTCTCTCCATAGTACCGG 58.017 55.000 0.00 0.00 0.00 5.28
363 364 1.493446 TGCTCTCTCCATAGTACCGGA 59.507 52.381 9.46 0.00 0.00 5.14
370 371 3.323774 TCCATAGTACCGGAGAATGGT 57.676 47.619 9.46 0.00 43.62 3.55
371 372 2.963101 TCCATAGTACCGGAGAATGGTG 59.037 50.000 9.46 0.00 40.73 4.17
372 373 2.698797 CCATAGTACCGGAGAATGGTGT 59.301 50.000 9.46 0.00 40.73 4.16
373 374 3.134081 CCATAGTACCGGAGAATGGTGTT 59.866 47.826 9.46 0.00 40.73 3.32
374 375 4.383770 CCATAGTACCGGAGAATGGTGTTT 60.384 45.833 9.46 0.00 40.73 2.83
375 376 3.782656 AGTACCGGAGAATGGTGTTTT 57.217 42.857 9.46 0.00 40.73 2.43
376 377 4.895668 AGTACCGGAGAATGGTGTTTTA 57.104 40.909 9.46 0.00 40.73 1.52
377 378 4.828829 AGTACCGGAGAATGGTGTTTTAG 58.171 43.478 9.46 0.00 40.73 1.85
378 379 3.782656 ACCGGAGAATGGTGTTTTAGT 57.217 42.857 9.46 0.00 38.60 2.24
379 380 3.671716 ACCGGAGAATGGTGTTTTAGTC 58.328 45.455 9.46 0.00 38.60 2.59
380 381 3.071892 ACCGGAGAATGGTGTTTTAGTCA 59.928 43.478 9.46 0.00 38.60 3.41
381 382 4.261801 CCGGAGAATGGTGTTTTAGTCAT 58.738 43.478 0.00 0.00 0.00 3.06
382 383 4.332819 CCGGAGAATGGTGTTTTAGTCATC 59.667 45.833 0.00 0.00 0.00 2.92
383 384 5.178797 CGGAGAATGGTGTTTTAGTCATCT 58.821 41.667 0.00 0.00 0.00 2.90
384 385 5.643777 CGGAGAATGGTGTTTTAGTCATCTT 59.356 40.000 0.00 0.00 0.00 2.40
385 386 6.402550 CGGAGAATGGTGTTTTAGTCATCTTG 60.403 42.308 0.00 0.00 0.00 3.02
386 387 6.259550 AGAATGGTGTTTTAGTCATCTTGC 57.740 37.500 0.00 0.00 0.00 4.01
387 388 5.183904 AGAATGGTGTTTTAGTCATCTTGCC 59.816 40.000 0.00 0.00 0.00 4.52
388 389 3.153919 TGGTGTTTTAGTCATCTTGCCC 58.846 45.455 0.00 0.00 0.00 5.36
389 390 3.153919 GGTGTTTTAGTCATCTTGCCCA 58.846 45.455 0.00 0.00 0.00 5.36
390 391 3.763897 GGTGTTTTAGTCATCTTGCCCAT 59.236 43.478 0.00 0.00 0.00 4.00
391 392 4.380867 GGTGTTTTAGTCATCTTGCCCATG 60.381 45.833 0.00 0.00 0.00 3.66
392 393 4.458989 GTGTTTTAGTCATCTTGCCCATGA 59.541 41.667 0.00 0.00 0.00 3.07
393 394 4.701651 TGTTTTAGTCATCTTGCCCATGAG 59.298 41.667 0.00 0.00 30.72 2.90
394 395 3.565764 TTAGTCATCTTGCCCATGAGG 57.434 47.619 0.00 0.00 39.47 3.86
403 404 2.819595 CCCATGAGGCACGGTTCG 60.820 66.667 0.00 0.00 0.00 3.95
404 405 3.499737 CCATGAGGCACGGTTCGC 61.500 66.667 0.00 0.00 0.00 4.70
405 406 2.741985 CATGAGGCACGGTTCGCA 60.742 61.111 0.00 0.00 0.00 5.10
406 407 2.031919 ATGAGGCACGGTTCGCAA 59.968 55.556 0.00 0.00 0.00 4.85
407 408 1.599518 ATGAGGCACGGTTCGCAAA 60.600 52.632 0.00 0.00 0.00 3.68
408 409 0.960364 ATGAGGCACGGTTCGCAAAT 60.960 50.000 0.00 0.00 0.00 2.32
409 410 0.320858 TGAGGCACGGTTCGCAAATA 60.321 50.000 0.00 0.00 0.00 1.40
410 411 0.096454 GAGGCACGGTTCGCAAATAC 59.904 55.000 0.00 0.00 0.00 1.89
411 412 1.135939 GGCACGGTTCGCAAATACC 59.864 57.895 0.00 0.00 0.00 2.73
412 413 1.579084 GGCACGGTTCGCAAATACCA 61.579 55.000 0.00 0.00 33.94 3.25
413 414 0.238817 GCACGGTTCGCAAATACCAA 59.761 50.000 0.00 0.00 33.94 3.67
414 415 1.727857 GCACGGTTCGCAAATACCAAG 60.728 52.381 0.00 0.00 33.94 3.61
415 416 1.533731 CACGGTTCGCAAATACCAAGT 59.466 47.619 0.00 0.00 33.94 3.16
416 417 1.533731 ACGGTTCGCAAATACCAAGTG 59.466 47.619 0.00 0.00 33.94 3.16
417 418 1.533731 CGGTTCGCAAATACCAAGTGT 59.466 47.619 0.00 0.00 33.94 3.55
418 419 2.031508 CGGTTCGCAAATACCAAGTGTT 60.032 45.455 0.00 0.00 33.94 3.32
419 420 3.549221 CGGTTCGCAAATACCAAGTGTTT 60.549 43.478 0.00 0.00 33.94 2.83
420 421 3.978855 GGTTCGCAAATACCAAGTGTTTC 59.021 43.478 0.00 0.00 34.48 2.78
421 422 4.498345 GGTTCGCAAATACCAAGTGTTTCA 60.498 41.667 0.00 0.00 34.48 2.69
422 423 5.219633 GTTCGCAAATACCAAGTGTTTCAT 58.780 37.500 0.00 0.00 0.00 2.57
423 424 6.375377 GTTCGCAAATACCAAGTGTTTCATA 58.625 36.000 0.00 0.00 0.00 2.15
424 425 6.561737 TCGCAAATACCAAGTGTTTCATAA 57.438 33.333 0.00 0.00 0.00 1.90
425 426 7.151999 TCGCAAATACCAAGTGTTTCATAAT 57.848 32.000 0.00 0.00 0.00 1.28
426 427 7.247728 TCGCAAATACCAAGTGTTTCATAATC 58.752 34.615 0.00 0.00 0.00 1.75
427 428 7.026562 CGCAAATACCAAGTGTTTCATAATCA 58.973 34.615 0.00 0.00 0.00 2.57
428 429 7.540400 CGCAAATACCAAGTGTTTCATAATCAA 59.460 33.333 0.00 0.00 0.00 2.57
429 430 8.863049 GCAAATACCAAGTGTTTCATAATCAAG 58.137 33.333 0.00 0.00 0.00 3.02
430 431 9.912634 CAAATACCAAGTGTTTCATAATCAAGT 57.087 29.630 0.00 0.00 0.00 3.16
431 432 9.912634 AAATACCAAGTGTTTCATAATCAAGTG 57.087 29.630 0.00 0.00 0.00 3.16
432 433 6.331369 ACCAAGTGTTTCATAATCAAGTGG 57.669 37.500 0.00 0.00 0.00 4.00
433 434 5.833131 ACCAAGTGTTTCATAATCAAGTGGT 59.167 36.000 0.00 0.00 0.00 4.16
434 435 6.323739 ACCAAGTGTTTCATAATCAAGTGGTT 59.676 34.615 0.00 0.00 31.10 3.67
435 436 6.863126 CCAAGTGTTTCATAATCAAGTGGTTC 59.137 38.462 0.00 0.00 0.00 3.62
436 437 6.575162 AGTGTTTCATAATCAAGTGGTTCC 57.425 37.500 0.00 0.00 0.00 3.62
437 438 6.068010 AGTGTTTCATAATCAAGTGGTTCCA 58.932 36.000 0.00 0.00 0.00 3.53
438 439 6.549364 AGTGTTTCATAATCAAGTGGTTCCAA 59.451 34.615 0.00 0.00 0.00 3.53
439 440 7.069331 AGTGTTTCATAATCAAGTGGTTCCAAA 59.931 33.333 0.00 0.00 0.00 3.28
440 441 7.708752 GTGTTTCATAATCAAGTGGTTCCAAAA 59.291 33.333 0.00 0.00 0.00 2.44
441 442 7.925483 TGTTTCATAATCAAGTGGTTCCAAAAG 59.075 33.333 0.00 0.00 0.00 2.27
442 443 6.024552 TCATAATCAAGTGGTTCCAAAAGC 57.975 37.500 0.00 0.00 0.00 3.51
443 444 3.751479 AATCAAGTGGTTCCAAAAGCC 57.249 42.857 0.00 0.00 31.73 4.35
444 445 1.408969 TCAAGTGGTTCCAAAAGCCC 58.591 50.000 0.00 0.00 31.73 5.19
445 446 1.118838 CAAGTGGTTCCAAAAGCCCA 58.881 50.000 0.00 0.00 31.73 5.36
446 447 1.693606 CAAGTGGTTCCAAAAGCCCAT 59.306 47.619 0.00 0.00 31.73 4.00
447 448 1.632589 AGTGGTTCCAAAAGCCCATC 58.367 50.000 0.00 0.00 31.73 3.51
448 449 1.133199 AGTGGTTCCAAAAGCCCATCA 60.133 47.619 0.00 0.00 31.73 3.07
449 450 1.273327 GTGGTTCCAAAAGCCCATCAG 59.727 52.381 0.00 0.00 31.73 2.90
450 451 1.133199 TGGTTCCAAAAGCCCATCAGT 60.133 47.619 0.00 0.00 31.73 3.41
451 452 2.109128 TGGTTCCAAAAGCCCATCAGTA 59.891 45.455 0.00 0.00 31.73 2.74
452 453 3.245586 TGGTTCCAAAAGCCCATCAGTAT 60.246 43.478 0.00 0.00 31.73 2.12
453 454 3.131046 GGTTCCAAAAGCCCATCAGTATG 59.869 47.826 0.00 0.00 37.54 2.39
467 468 6.057627 CATCAGTATGGAGTTTCTTCATGC 57.942 41.667 1.25 0.16 33.22 4.06
468 469 4.183865 TCAGTATGGAGTTTCTTCATGCG 58.816 43.478 1.25 0.00 37.20 4.73
469 470 3.935203 CAGTATGGAGTTTCTTCATGCGT 59.065 43.478 1.25 0.00 37.20 5.24
470 471 4.393062 CAGTATGGAGTTTCTTCATGCGTT 59.607 41.667 1.25 0.00 37.20 4.84
471 472 5.003804 AGTATGGAGTTTCTTCATGCGTTT 58.996 37.500 1.25 0.00 37.20 3.60
472 473 4.853924 ATGGAGTTTCTTCATGCGTTTT 57.146 36.364 0.00 0.00 26.95 2.43
473 474 5.957842 ATGGAGTTTCTTCATGCGTTTTA 57.042 34.783 0.00 0.00 26.95 1.52
474 475 5.103290 TGGAGTTTCTTCATGCGTTTTAC 57.897 39.130 0.00 0.00 0.00 2.01
475 476 4.576873 TGGAGTTTCTTCATGCGTTTTACA 59.423 37.500 0.00 0.00 0.00 2.41
476 477 4.909880 GGAGTTTCTTCATGCGTTTTACAC 59.090 41.667 0.00 0.00 0.00 2.90
477 478 4.855531 AGTTTCTTCATGCGTTTTACACC 58.144 39.130 0.00 0.00 0.00 4.16
478 479 3.529634 TTCTTCATGCGTTTTACACCG 57.470 42.857 0.00 0.00 0.00 4.94
479 480 2.756829 TCTTCATGCGTTTTACACCGA 58.243 42.857 0.00 0.00 0.00 4.69
480 481 3.331150 TCTTCATGCGTTTTACACCGAT 58.669 40.909 0.00 0.00 0.00 4.18
481 482 4.496360 TCTTCATGCGTTTTACACCGATA 58.504 39.130 0.00 0.00 0.00 2.92
482 483 5.113383 TCTTCATGCGTTTTACACCGATAT 58.887 37.500 0.00 0.00 0.00 1.63
483 484 4.787381 TCATGCGTTTTACACCGATATG 57.213 40.909 0.00 0.00 0.00 1.78
484 485 4.434520 TCATGCGTTTTACACCGATATGA 58.565 39.130 0.00 0.00 31.47 2.15
485 486 4.269123 TCATGCGTTTTACACCGATATGAC 59.731 41.667 0.00 0.00 30.06 3.06
486 487 2.931325 TGCGTTTTACACCGATATGACC 59.069 45.455 0.00 0.00 0.00 4.02
487 488 3.192466 GCGTTTTACACCGATATGACCT 58.808 45.455 0.00 0.00 0.00 3.85
488 489 4.142204 TGCGTTTTACACCGATATGACCTA 60.142 41.667 0.00 0.00 0.00 3.08
489 490 4.805192 GCGTTTTACACCGATATGACCTAA 59.195 41.667 0.00 0.00 0.00 2.69
490 491 5.291614 GCGTTTTACACCGATATGACCTAAA 59.708 40.000 0.00 0.00 0.00 1.85
491 492 6.699063 CGTTTTACACCGATATGACCTAAAC 58.301 40.000 0.00 0.00 0.00 2.01
492 493 6.506827 CGTTTTACACCGATATGACCTAAACG 60.507 42.308 0.00 0.00 38.38 3.60
493 494 3.447918 ACACCGATATGACCTAAACGG 57.552 47.619 0.00 0.00 44.77 4.44
494 495 2.132762 CACCGATATGACCTAAACGGC 58.867 52.381 0.00 0.00 43.36 5.68
495 496 1.758280 ACCGATATGACCTAAACGGCA 59.242 47.619 0.00 0.00 43.36 5.69
496 497 2.223971 ACCGATATGACCTAAACGGCAG 60.224 50.000 0.00 0.00 43.36 4.85
497 498 2.223971 CCGATATGACCTAAACGGCAGT 60.224 50.000 0.00 0.00 35.61 4.40
498 499 2.794910 CGATATGACCTAAACGGCAGTG 59.205 50.000 0.00 0.00 35.61 3.66
499 500 2.018542 TATGACCTAAACGGCAGTGC 57.981 50.000 6.55 6.55 35.61 4.40
500 501 0.676782 ATGACCTAAACGGCAGTGCC 60.677 55.000 25.07 25.07 46.75 5.01
513 514 2.061028 GCAGTGCCACAAATAAGTTGC 58.939 47.619 2.85 0.00 41.31 4.17
514 515 2.545532 GCAGTGCCACAAATAAGTTGCA 60.546 45.455 2.85 0.00 41.31 4.08
519 520 5.309323 TGCCACAAATAAGTTGCACTATC 57.691 39.130 0.00 0.00 41.31 2.08
520 521 4.764308 TGCCACAAATAAGTTGCACTATCA 59.236 37.500 0.00 0.00 41.31 2.15
521 522 5.418524 TGCCACAAATAAGTTGCACTATCAT 59.581 36.000 0.00 0.00 41.31 2.45
522 523 6.071447 TGCCACAAATAAGTTGCACTATCATT 60.071 34.615 0.00 0.00 41.31 2.57
523 524 7.121907 TGCCACAAATAAGTTGCACTATCATTA 59.878 33.333 0.00 0.00 41.31 1.90
524 525 8.137437 GCCACAAATAAGTTGCACTATCATTAT 58.863 33.333 0.00 0.00 41.31 1.28
525 526 9.669353 CCACAAATAAGTTGCACTATCATTATC 57.331 33.333 0.00 0.00 41.31 1.75
532 533 7.783090 AGTTGCACTATCATTATCAACTCTG 57.217 36.000 0.00 0.00 39.66 3.35
533 534 6.259608 AGTTGCACTATCATTATCAACTCTGC 59.740 38.462 0.00 0.00 39.66 4.26
534 535 5.673514 TGCACTATCATTATCAACTCTGCA 58.326 37.500 0.00 0.00 0.00 4.41
535 536 6.293698 TGCACTATCATTATCAACTCTGCAT 58.706 36.000 0.00 0.00 0.00 3.96
536 537 6.426025 TGCACTATCATTATCAACTCTGCATC 59.574 38.462 0.00 0.00 0.00 3.91
537 538 6.649973 GCACTATCATTATCAACTCTGCATCT 59.350 38.462 0.00 0.00 0.00 2.90
538 539 7.172875 GCACTATCATTATCAACTCTGCATCTT 59.827 37.037 0.00 0.00 0.00 2.40
539 540 9.053840 CACTATCATTATCAACTCTGCATCTTT 57.946 33.333 0.00 0.00 0.00 2.52
540 541 9.624373 ACTATCATTATCAACTCTGCATCTTTT 57.376 29.630 0.00 0.00 0.00 2.27
541 542 9.880064 CTATCATTATCAACTCTGCATCTTTTG 57.120 33.333 0.00 0.00 0.00 2.44
542 543 7.092137 TCATTATCAACTCTGCATCTTTTGG 57.908 36.000 0.00 0.00 0.00 3.28
543 544 3.863142 ATCAACTCTGCATCTTTTGGC 57.137 42.857 0.00 0.00 0.00 4.52
544 545 2.867624 TCAACTCTGCATCTTTTGGCT 58.132 42.857 0.00 0.00 0.00 4.75
545 546 3.225104 TCAACTCTGCATCTTTTGGCTT 58.775 40.909 0.00 0.00 0.00 4.35
546 547 3.254166 TCAACTCTGCATCTTTTGGCTTC 59.746 43.478 0.00 0.00 0.00 3.86
547 548 2.867624 ACTCTGCATCTTTTGGCTTCA 58.132 42.857 0.00 0.00 0.00 3.02
548 549 3.225104 ACTCTGCATCTTTTGGCTTCAA 58.775 40.909 0.00 0.00 0.00 2.69
549 550 3.005155 ACTCTGCATCTTTTGGCTTCAAC 59.995 43.478 0.00 0.00 0.00 3.18
550 551 2.957680 TCTGCATCTTTTGGCTTCAACA 59.042 40.909 0.00 0.00 0.00 3.33
551 552 3.054878 CTGCATCTTTTGGCTTCAACAC 58.945 45.455 0.00 0.00 0.00 3.32
552 553 2.694628 TGCATCTTTTGGCTTCAACACT 59.305 40.909 0.00 0.00 0.00 3.55
553 554 3.888323 TGCATCTTTTGGCTTCAACACTA 59.112 39.130 0.00 0.00 0.00 2.74
554 555 4.523943 TGCATCTTTTGGCTTCAACACTAT 59.476 37.500 0.00 0.00 0.00 2.12
555 556 4.860907 GCATCTTTTGGCTTCAACACTATG 59.139 41.667 0.00 0.00 0.00 2.23
556 557 5.335897 GCATCTTTTGGCTTCAACACTATGA 60.336 40.000 0.00 0.00 0.00 2.15
557 558 6.680810 CATCTTTTGGCTTCAACACTATGAA 58.319 36.000 0.00 0.00 37.70 2.57
558 559 6.899393 TCTTTTGGCTTCAACACTATGAAT 57.101 33.333 0.00 0.00 38.55 2.57
559 560 7.994425 TCTTTTGGCTTCAACACTATGAATA 57.006 32.000 0.00 0.00 38.55 1.75
560 561 8.579850 TCTTTTGGCTTCAACACTATGAATAT 57.420 30.769 0.00 0.00 38.55 1.28
561 562 8.461222 TCTTTTGGCTTCAACACTATGAATATG 58.539 33.333 0.00 0.00 38.55 1.78
562 563 7.701539 TTTGGCTTCAACACTATGAATATGT 57.298 32.000 0.00 0.00 38.55 2.29
563 564 6.682423 TGGCTTCAACACTATGAATATGTG 57.318 37.500 0.00 0.00 38.55 3.21
564 565 6.179756 TGGCTTCAACACTATGAATATGTGT 58.820 36.000 0.00 0.00 45.42 3.72
565 566 7.334858 TGGCTTCAACACTATGAATATGTGTA 58.665 34.615 0.00 0.00 43.11 2.90
566 567 7.992608 TGGCTTCAACACTATGAATATGTGTAT 59.007 33.333 0.00 0.00 43.11 2.29
567 568 8.840321 GGCTTCAACACTATGAATATGTGTATT 58.160 33.333 0.00 0.00 43.11 1.89
1597 1599 8.747538 AGTAGGTGTTAACTGAAAAAGAACAT 57.252 30.769 7.22 0.00 32.99 2.71
2085 2132 5.829924 CCTATTTGACTACCAAGATGGCAAT 59.170 40.000 0.00 0.00 42.67 3.56
2365 2412 1.133790 GGCATGACAGCAAAGCTAAGG 59.866 52.381 0.00 0.00 36.40 2.69
3074 3228 1.205657 GTTCTTGCTTCACGACGACA 58.794 50.000 0.00 0.00 0.00 4.35
3146 3300 2.445845 CTATCCCCCTCCACGGCA 60.446 66.667 0.00 0.00 0.00 5.69
3187 3341 1.664965 GCAGTTCAGGCTCGTCGTT 60.665 57.895 0.00 0.00 0.00 3.85
3224 3378 0.526211 CATCCACCTCGTCGTCAGAA 59.474 55.000 0.00 0.00 0.00 3.02
3240 3406 0.392336 AGAATCATCAGAGGGCTCGC 59.608 55.000 0.00 0.00 34.09 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 9.965824 AGTTGAAAATCATCGTAACAAGAAAAT 57.034 25.926 0.00 0.00 0.00 1.82
144 145 9.796120 AAGTTGAAAATCATCGTAACAAGAAAA 57.204 25.926 0.00 0.00 0.00 2.29
145 146 9.445786 GAAGTTGAAAATCATCGTAACAAGAAA 57.554 29.630 0.00 0.00 0.00 2.52
146 147 8.616942 TGAAGTTGAAAATCATCGTAACAAGAA 58.383 29.630 0.00 0.00 0.00 2.52
147 148 8.067784 GTGAAGTTGAAAATCATCGTAACAAGA 58.932 33.333 0.00 0.00 0.00 3.02
148 149 8.070171 AGTGAAGTTGAAAATCATCGTAACAAG 58.930 33.333 0.00 0.00 0.00 3.16
149 150 7.925993 AGTGAAGTTGAAAATCATCGTAACAA 58.074 30.769 0.00 0.00 0.00 2.83
150 151 7.441157 AGAGTGAAGTTGAAAATCATCGTAACA 59.559 33.333 0.00 0.00 0.00 2.41
151 152 7.742089 CAGAGTGAAGTTGAAAATCATCGTAAC 59.258 37.037 0.00 0.00 0.00 2.50
152 153 7.655732 TCAGAGTGAAGTTGAAAATCATCGTAA 59.344 33.333 0.00 0.00 0.00 3.18
153 154 7.151976 TCAGAGTGAAGTTGAAAATCATCGTA 58.848 34.615 0.00 0.00 0.00 3.43
154 155 5.991606 TCAGAGTGAAGTTGAAAATCATCGT 59.008 36.000 0.00 0.00 0.00 3.73
155 156 6.471976 TCAGAGTGAAGTTGAAAATCATCG 57.528 37.500 0.00 0.00 0.00 3.84
156 157 9.688592 AATTTCAGAGTGAAGTTGAAAATCATC 57.311 29.630 3.38 0.00 42.20 2.92
157 158 9.688592 GAATTTCAGAGTGAAGTTGAAAATCAT 57.311 29.630 2.51 0.00 42.20 2.45
158 159 8.906867 AGAATTTCAGAGTGAAGTTGAAAATCA 58.093 29.630 13.52 0.00 42.20 2.57
159 160 9.741647 AAGAATTTCAGAGTGAAGTTGAAAATC 57.258 29.630 2.51 4.96 42.20 2.17
161 162 9.357652 CAAAGAATTTCAGAGTGAAGTTGAAAA 57.642 29.630 2.51 0.00 42.20 2.29
162 163 8.739039 TCAAAGAATTTCAGAGTGAAGTTGAAA 58.261 29.630 2.51 1.90 42.83 2.69
163 164 8.279970 TCAAAGAATTTCAGAGTGAAGTTGAA 57.720 30.769 2.51 0.00 36.61 2.69
164 165 7.864108 TCAAAGAATTTCAGAGTGAAGTTGA 57.136 32.000 2.51 1.71 36.61 3.18
165 166 8.186821 AGTTCAAAGAATTTCAGAGTGAAGTTG 58.813 33.333 2.51 0.00 36.61 3.16
166 167 8.286191 AGTTCAAAGAATTTCAGAGTGAAGTT 57.714 30.769 0.00 0.00 38.71 2.66
167 168 7.872113 AGTTCAAAGAATTTCAGAGTGAAGT 57.128 32.000 0.00 3.36 37.70 3.01
168 169 9.578439 AAAAGTTCAAAGAATTTCAGAGTGAAG 57.422 29.630 0.00 0.00 37.70 3.02
169 170 9.573133 GAAAAGTTCAAAGAATTTCAGAGTGAA 57.427 29.630 0.00 0.60 35.03 3.18
170 171 8.739039 TGAAAAGTTCAAAGAATTTCAGAGTGA 58.261 29.630 0.00 0.00 35.03 3.41
171 172 8.915871 TGAAAAGTTCAAAGAATTTCAGAGTG 57.084 30.769 0.00 0.00 35.03 3.51
216 217 8.900781 GCAGATACGGGTATATCTACTTAATGA 58.099 37.037 0.00 0.00 39.44 2.57
217 218 8.904834 AGCAGATACGGGTATATCTACTTAATG 58.095 37.037 0.00 0.00 39.44 1.90
218 219 9.476928 AAGCAGATACGGGTATATCTACTTAAT 57.523 33.333 6.51 0.00 40.90 1.40
219 220 8.874744 AAGCAGATACGGGTATATCTACTTAA 57.125 34.615 6.51 0.00 40.90 1.85
220 221 9.964354 TTAAGCAGATACGGGTATATCTACTTA 57.036 33.333 9.79 9.79 40.90 2.24
221 222 8.874744 TTAAGCAGATACGGGTATATCTACTT 57.125 34.615 11.25 11.25 43.31 2.24
222 223 8.874744 TTTAAGCAGATACGGGTATATCTACT 57.125 34.615 0.00 0.00 39.44 2.57
223 224 9.733219 GATTTAAGCAGATACGGGTATATCTAC 57.267 37.037 0.00 0.00 39.44 2.59
224 225 9.470399 TGATTTAAGCAGATACGGGTATATCTA 57.530 33.333 0.00 0.00 39.44 1.98
225 226 8.362464 TGATTTAAGCAGATACGGGTATATCT 57.638 34.615 0.00 0.00 41.67 1.98
226 227 9.250624 GATGATTTAAGCAGATACGGGTATATC 57.749 37.037 0.00 0.00 32.55 1.63
227 228 8.982723 AGATGATTTAAGCAGATACGGGTATAT 58.017 33.333 0.00 0.00 0.00 0.86
228 229 8.251026 CAGATGATTTAAGCAGATACGGGTATA 58.749 37.037 0.00 0.00 0.00 1.47
229 230 7.099764 CAGATGATTTAAGCAGATACGGGTAT 58.900 38.462 0.00 0.00 0.00 2.73
230 231 6.041637 ACAGATGATTTAAGCAGATACGGGTA 59.958 38.462 0.00 0.00 0.00 3.69
231 232 5.163301 ACAGATGATTTAAGCAGATACGGGT 60.163 40.000 0.00 0.00 0.00 5.28
232 233 5.178252 CACAGATGATTTAAGCAGATACGGG 59.822 44.000 0.00 0.00 0.00 5.28
233 234 5.985530 TCACAGATGATTTAAGCAGATACGG 59.014 40.000 0.00 0.00 0.00 4.02
234 235 7.307042 CCTTCACAGATGATTTAAGCAGATACG 60.307 40.741 0.00 0.00 33.85 3.06
235 236 7.497249 ACCTTCACAGATGATTTAAGCAGATAC 59.503 37.037 0.00 0.00 33.85 2.24
236 237 7.496920 CACCTTCACAGATGATTTAAGCAGATA 59.503 37.037 0.00 0.00 33.85 1.98
237 238 6.318144 CACCTTCACAGATGATTTAAGCAGAT 59.682 38.462 0.00 0.00 33.85 2.90
238 239 5.645067 CACCTTCACAGATGATTTAAGCAGA 59.355 40.000 0.00 0.00 33.85 4.26
239 240 5.645067 TCACCTTCACAGATGATTTAAGCAG 59.355 40.000 0.00 0.00 33.85 4.24
240 241 5.559770 TCACCTTCACAGATGATTTAAGCA 58.440 37.500 0.00 0.00 33.85 3.91
241 242 5.877012 TCTCACCTTCACAGATGATTTAAGC 59.123 40.000 0.00 0.00 33.85 3.09
242 243 7.912056 TTCTCACCTTCACAGATGATTTAAG 57.088 36.000 0.00 0.00 33.85 1.85
243 244 8.690203 TTTTCTCACCTTCACAGATGATTTAA 57.310 30.769 0.00 0.00 33.85 1.52
244 245 8.868522 ATTTTCTCACCTTCACAGATGATTTA 57.131 30.769 0.00 0.00 33.85 1.40
245 246 7.771927 ATTTTCTCACCTTCACAGATGATTT 57.228 32.000 0.00 0.00 33.85 2.17
246 247 8.734386 GTTATTTTCTCACCTTCACAGATGATT 58.266 33.333 0.00 0.00 33.85 2.57
247 248 7.065085 CGTTATTTTCTCACCTTCACAGATGAT 59.935 37.037 0.00 0.00 33.85 2.45
248 249 6.368791 CGTTATTTTCTCACCTTCACAGATGA 59.631 38.462 0.00 0.00 0.00 2.92
249 250 6.368791 TCGTTATTTTCTCACCTTCACAGATG 59.631 38.462 0.00 0.00 0.00 2.90
250 251 6.464222 TCGTTATTTTCTCACCTTCACAGAT 58.536 36.000 0.00 0.00 0.00 2.90
251 252 5.849510 TCGTTATTTTCTCACCTTCACAGA 58.150 37.500 0.00 0.00 0.00 3.41
252 253 6.727824 ATCGTTATTTTCTCACCTTCACAG 57.272 37.500 0.00 0.00 0.00 3.66
253 254 7.494625 GGATATCGTTATTTTCTCACCTTCACA 59.505 37.037 0.00 0.00 0.00 3.58
254 255 7.306632 CGGATATCGTTATTTTCTCACCTTCAC 60.307 40.741 0.00 0.00 0.00 3.18
255 256 6.700081 CGGATATCGTTATTTTCTCACCTTCA 59.300 38.462 0.00 0.00 0.00 3.02
256 257 6.346678 GCGGATATCGTTATTTTCTCACCTTC 60.347 42.308 0.00 0.00 41.72 3.46
257 258 5.465724 GCGGATATCGTTATTTTCTCACCTT 59.534 40.000 0.00 0.00 41.72 3.50
258 259 4.989168 GCGGATATCGTTATTTTCTCACCT 59.011 41.667 0.00 0.00 41.72 4.00
259 260 4.151867 GGCGGATATCGTTATTTTCTCACC 59.848 45.833 0.00 0.00 41.72 4.02
260 261 4.748102 TGGCGGATATCGTTATTTTCTCAC 59.252 41.667 0.00 0.00 41.72 3.51
261 262 4.748102 GTGGCGGATATCGTTATTTTCTCA 59.252 41.667 0.00 0.00 41.72 3.27
262 263 4.143389 CGTGGCGGATATCGTTATTTTCTC 60.143 45.833 0.00 0.00 41.72 2.87
263 264 3.739300 CGTGGCGGATATCGTTATTTTCT 59.261 43.478 0.00 0.00 41.72 2.52
264 265 3.737266 TCGTGGCGGATATCGTTATTTTC 59.263 43.478 0.00 0.00 41.72 2.29
265 266 3.719924 TCGTGGCGGATATCGTTATTTT 58.280 40.909 0.00 0.00 41.72 1.82
266 267 3.314553 CTCGTGGCGGATATCGTTATTT 58.685 45.455 0.00 0.00 41.72 1.40
267 268 2.925306 GCTCGTGGCGGATATCGTTATT 60.925 50.000 0.00 0.00 41.72 1.40
268 269 1.402456 GCTCGTGGCGGATATCGTTAT 60.402 52.381 0.00 0.00 41.72 1.89
269 270 0.039798 GCTCGTGGCGGATATCGTTA 60.040 55.000 0.00 0.00 41.72 3.18
270 271 1.299926 GCTCGTGGCGGATATCGTT 60.300 57.895 0.00 0.00 41.72 3.85
271 272 2.335369 GCTCGTGGCGGATATCGT 59.665 61.111 0.00 0.00 41.72 3.73
272 273 2.430921 GGCTCGTGGCGGATATCG 60.431 66.667 0.00 0.00 42.94 2.92
273 274 1.080434 GAGGCTCGTGGCGGATATC 60.080 63.158 0.00 0.00 44.18 1.63
274 275 1.399744 TTGAGGCTCGTGGCGGATAT 61.400 55.000 10.42 0.00 44.18 1.63
275 276 1.399744 ATTGAGGCTCGTGGCGGATA 61.400 55.000 10.42 0.00 44.18 2.59
276 277 1.399744 TATTGAGGCTCGTGGCGGAT 61.400 55.000 10.42 4.17 44.18 4.18
277 278 1.399744 ATATTGAGGCTCGTGGCGGA 61.400 55.000 10.42 0.00 44.18 5.54
278 279 0.532862 AATATTGAGGCTCGTGGCGG 60.533 55.000 10.42 0.00 44.18 6.13
279 280 0.861837 GAATATTGAGGCTCGTGGCG 59.138 55.000 10.42 0.00 44.18 5.69
280 281 1.953559 TGAATATTGAGGCTCGTGGC 58.046 50.000 10.42 2.35 40.90 5.01
281 282 2.733552 CGATGAATATTGAGGCTCGTGG 59.266 50.000 10.42 0.00 0.00 4.94
282 283 2.733552 CCGATGAATATTGAGGCTCGTG 59.266 50.000 10.42 0.00 0.00 4.35
283 284 2.628178 TCCGATGAATATTGAGGCTCGT 59.372 45.455 10.42 3.67 0.00 4.18
284 285 2.989840 GTCCGATGAATATTGAGGCTCG 59.010 50.000 10.42 0.00 0.00 5.03
285 286 3.244215 TGGTCCGATGAATATTGAGGCTC 60.244 47.826 7.79 7.79 0.00 4.70
286 287 2.705658 TGGTCCGATGAATATTGAGGCT 59.294 45.455 0.00 0.00 0.00 4.58
287 288 2.808543 GTGGTCCGATGAATATTGAGGC 59.191 50.000 0.00 0.00 0.00 4.70
288 289 4.071961 TGTGGTCCGATGAATATTGAGG 57.928 45.455 0.00 0.00 0.00 3.86
289 290 6.223120 TGTATGTGGTCCGATGAATATTGAG 58.777 40.000 0.00 0.00 0.00 3.02
290 291 6.168270 TGTATGTGGTCCGATGAATATTGA 57.832 37.500 0.00 0.00 0.00 2.57
291 292 6.875726 AGATGTATGTGGTCCGATGAATATTG 59.124 38.462 0.00 0.00 0.00 1.90
292 293 6.875726 CAGATGTATGTGGTCCGATGAATATT 59.124 38.462 0.00 0.00 0.00 1.28
293 294 6.014242 ACAGATGTATGTGGTCCGATGAATAT 60.014 38.462 0.00 0.00 30.46 1.28
294 295 5.304357 ACAGATGTATGTGGTCCGATGAATA 59.696 40.000 0.00 0.00 30.46 1.75
295 296 4.101585 ACAGATGTATGTGGTCCGATGAAT 59.898 41.667 0.00 0.00 30.46 2.57
296 297 3.450817 ACAGATGTATGTGGTCCGATGAA 59.549 43.478 0.00 0.00 30.46 2.57
297 298 3.031013 ACAGATGTATGTGGTCCGATGA 58.969 45.455 0.00 0.00 30.46 2.92
298 299 3.459232 ACAGATGTATGTGGTCCGATG 57.541 47.619 0.00 0.00 30.46 3.84
314 315 9.685276 AGATTTGTTGGAAATCATACATACAGA 57.315 29.630 9.24 0.00 38.70 3.41
315 316 9.726232 CAGATTTGTTGGAAATCATACATACAG 57.274 33.333 9.24 0.00 38.70 2.74
316 317 9.241919 ACAGATTTGTTGGAAATCATACATACA 57.758 29.630 9.24 0.00 38.70 2.29
333 334 3.777106 TGGAGAGAGCAACAGATTTGT 57.223 42.857 0.00 0.00 39.87 2.83
334 335 5.426504 ACTATGGAGAGAGCAACAGATTTG 58.573 41.667 0.00 0.00 0.00 2.32
335 336 5.690464 ACTATGGAGAGAGCAACAGATTT 57.310 39.130 0.00 0.00 0.00 2.17
336 337 5.069781 GGTACTATGGAGAGAGCAACAGATT 59.930 44.000 0.00 0.00 0.00 2.40
337 338 4.586841 GGTACTATGGAGAGAGCAACAGAT 59.413 45.833 0.00 0.00 0.00 2.90
338 339 3.954904 GGTACTATGGAGAGAGCAACAGA 59.045 47.826 0.00 0.00 0.00 3.41
339 340 3.243234 CGGTACTATGGAGAGAGCAACAG 60.243 52.174 0.00 0.00 0.00 3.16
340 341 2.688446 CGGTACTATGGAGAGAGCAACA 59.312 50.000 0.00 0.00 0.00 3.33
341 342 2.034812 CCGGTACTATGGAGAGAGCAAC 59.965 54.545 0.00 0.00 0.00 4.17
342 343 2.092049 TCCGGTACTATGGAGAGAGCAA 60.092 50.000 0.00 0.00 0.00 3.91
343 344 1.493446 TCCGGTACTATGGAGAGAGCA 59.507 52.381 0.00 0.00 0.00 4.26
344 345 2.273538 TCCGGTACTATGGAGAGAGC 57.726 55.000 0.00 0.00 0.00 4.09
350 351 2.963101 CACCATTCTCCGGTACTATGGA 59.037 50.000 24.21 7.78 38.39 3.41
351 352 2.698797 ACACCATTCTCCGGTACTATGG 59.301 50.000 19.10 19.10 41.18 2.74
352 353 4.402056 AACACCATTCTCCGGTACTATG 57.598 45.455 0.00 1.54 34.02 2.23
353 354 5.431179 AAAACACCATTCTCCGGTACTAT 57.569 39.130 0.00 0.00 34.02 2.12
354 355 4.895668 AAAACACCATTCTCCGGTACTA 57.104 40.909 0.00 0.00 34.02 1.82
355 356 3.782656 AAAACACCATTCTCCGGTACT 57.217 42.857 0.00 0.00 34.02 2.73
356 357 4.572909 ACTAAAACACCATTCTCCGGTAC 58.427 43.478 0.00 0.00 34.02 3.34
357 358 4.283978 TGACTAAAACACCATTCTCCGGTA 59.716 41.667 0.00 0.00 34.02 4.02
358 359 3.071892 TGACTAAAACACCATTCTCCGGT 59.928 43.478 0.00 0.00 37.16 5.28
359 360 3.670625 TGACTAAAACACCATTCTCCGG 58.329 45.455 0.00 0.00 0.00 5.14
360 361 5.178797 AGATGACTAAAACACCATTCTCCG 58.821 41.667 0.00 0.00 0.00 4.63
361 362 6.623767 GCAAGATGACTAAAACACCATTCTCC 60.624 42.308 0.00 0.00 0.00 3.71
362 363 6.317857 GCAAGATGACTAAAACACCATTCTC 58.682 40.000 0.00 0.00 0.00 2.87
363 364 5.183904 GGCAAGATGACTAAAACACCATTCT 59.816 40.000 0.00 0.00 0.00 2.40
364 365 5.402398 GGCAAGATGACTAAAACACCATTC 58.598 41.667 0.00 0.00 0.00 2.67
365 366 4.220602 GGGCAAGATGACTAAAACACCATT 59.779 41.667 0.00 0.00 0.00 3.16
366 367 3.763897 GGGCAAGATGACTAAAACACCAT 59.236 43.478 0.00 0.00 0.00 3.55
367 368 3.153919 GGGCAAGATGACTAAAACACCA 58.846 45.455 0.00 0.00 0.00 4.17
368 369 3.153919 TGGGCAAGATGACTAAAACACC 58.846 45.455 0.00 0.00 0.00 4.16
369 370 4.458989 TCATGGGCAAGATGACTAAAACAC 59.541 41.667 0.00 0.00 0.00 3.32
370 371 4.661222 TCATGGGCAAGATGACTAAAACA 58.339 39.130 0.00 0.00 0.00 2.83
371 372 4.096984 CCTCATGGGCAAGATGACTAAAAC 59.903 45.833 0.00 0.00 0.00 2.43
372 373 4.272489 CCTCATGGGCAAGATGACTAAAA 58.728 43.478 0.00 0.00 0.00 1.52
373 374 3.889815 CCTCATGGGCAAGATGACTAAA 58.110 45.455 0.00 0.00 0.00 1.85
374 375 3.565764 CCTCATGGGCAAGATGACTAA 57.434 47.619 0.00 0.00 0.00 2.24
386 387 2.819595 CGAACCGTGCCTCATGGG 60.820 66.667 9.59 0.00 44.23 4.00
387 388 3.499737 GCGAACCGTGCCTCATGG 61.500 66.667 3.66 3.66 45.34 3.66
388 389 1.851021 TTTGCGAACCGTGCCTCATG 61.851 55.000 0.00 0.00 0.00 3.07
389 390 0.960364 ATTTGCGAACCGTGCCTCAT 60.960 50.000 0.00 0.00 0.00 2.90
390 391 0.320858 TATTTGCGAACCGTGCCTCA 60.321 50.000 0.00 0.00 0.00 3.86
391 392 0.096454 GTATTTGCGAACCGTGCCTC 59.904 55.000 0.00 0.00 0.00 4.70
392 393 1.303091 GGTATTTGCGAACCGTGCCT 61.303 55.000 0.00 0.00 0.00 4.75
393 394 1.135939 GGTATTTGCGAACCGTGCC 59.864 57.895 0.00 0.00 0.00 5.01
394 395 0.238817 TTGGTATTTGCGAACCGTGC 59.761 50.000 0.00 0.00 38.70 5.34
395 396 1.533731 ACTTGGTATTTGCGAACCGTG 59.466 47.619 0.00 0.00 38.70 4.94
396 397 1.533731 CACTTGGTATTTGCGAACCGT 59.466 47.619 0.00 0.00 38.70 4.83
397 398 1.533731 ACACTTGGTATTTGCGAACCG 59.466 47.619 0.00 0.00 38.70 4.44
398 399 3.636282 AACACTTGGTATTTGCGAACC 57.364 42.857 0.00 0.00 36.24 3.62
399 400 4.602995 TGAAACACTTGGTATTTGCGAAC 58.397 39.130 0.00 0.00 0.00 3.95
400 401 4.902443 TGAAACACTTGGTATTTGCGAA 57.098 36.364 0.00 0.00 0.00 4.70
401 402 6.561737 TTATGAAACACTTGGTATTTGCGA 57.438 33.333 0.00 0.00 0.00 5.10
402 403 7.026562 TGATTATGAAACACTTGGTATTTGCG 58.973 34.615 0.00 0.00 0.00 4.85
403 404 8.755696 TTGATTATGAAACACTTGGTATTTGC 57.244 30.769 0.00 0.00 0.00 3.68
404 405 9.912634 ACTTGATTATGAAACACTTGGTATTTG 57.087 29.630 0.00 0.00 0.00 2.32
405 406 9.912634 CACTTGATTATGAAACACTTGGTATTT 57.087 29.630 0.00 0.00 0.00 1.40
406 407 8.522830 CCACTTGATTATGAAACACTTGGTATT 58.477 33.333 0.00 0.00 0.00 1.89
407 408 7.669722 ACCACTTGATTATGAAACACTTGGTAT 59.330 33.333 0.00 0.00 31.39 2.73
408 409 7.001674 ACCACTTGATTATGAAACACTTGGTA 58.998 34.615 0.00 0.00 31.39 3.25
409 410 5.833131 ACCACTTGATTATGAAACACTTGGT 59.167 36.000 0.00 0.00 0.00 3.67
410 411 6.331369 ACCACTTGATTATGAAACACTTGG 57.669 37.500 0.00 0.00 0.00 3.61
411 412 6.863126 GGAACCACTTGATTATGAAACACTTG 59.137 38.462 0.00 0.00 0.00 3.16
412 413 6.549364 TGGAACCACTTGATTATGAAACACTT 59.451 34.615 0.00 0.00 0.00 3.16
413 414 6.068010 TGGAACCACTTGATTATGAAACACT 58.932 36.000 0.00 0.00 0.00 3.55
414 415 6.325919 TGGAACCACTTGATTATGAAACAC 57.674 37.500 0.00 0.00 0.00 3.32
415 416 6.968263 TTGGAACCACTTGATTATGAAACA 57.032 33.333 0.00 0.00 0.00 2.83
416 417 7.095649 GCTTTTGGAACCACTTGATTATGAAAC 60.096 37.037 0.00 0.00 0.00 2.78
417 418 6.928492 GCTTTTGGAACCACTTGATTATGAAA 59.072 34.615 0.00 0.00 0.00 2.69
418 419 6.454795 GCTTTTGGAACCACTTGATTATGAA 58.545 36.000 0.00 0.00 0.00 2.57
419 420 5.047377 GGCTTTTGGAACCACTTGATTATGA 60.047 40.000 0.00 0.00 0.00 2.15
420 421 5.170748 GGCTTTTGGAACCACTTGATTATG 58.829 41.667 0.00 0.00 0.00 1.90
421 422 4.222810 GGGCTTTTGGAACCACTTGATTAT 59.777 41.667 0.00 0.00 0.00 1.28
422 423 3.576550 GGGCTTTTGGAACCACTTGATTA 59.423 43.478 0.00 0.00 0.00 1.75
423 424 2.368548 GGGCTTTTGGAACCACTTGATT 59.631 45.455 0.00 0.00 0.00 2.57
424 425 1.970640 GGGCTTTTGGAACCACTTGAT 59.029 47.619 0.00 0.00 0.00 2.57
425 426 1.342474 TGGGCTTTTGGAACCACTTGA 60.342 47.619 0.00 0.00 0.00 3.02
426 427 1.118838 TGGGCTTTTGGAACCACTTG 58.881 50.000 0.00 0.00 0.00 3.16
427 428 1.970640 GATGGGCTTTTGGAACCACTT 59.029 47.619 0.00 0.00 35.52 3.16
428 429 1.133199 TGATGGGCTTTTGGAACCACT 60.133 47.619 0.00 0.00 35.52 4.00
429 430 1.273327 CTGATGGGCTTTTGGAACCAC 59.727 52.381 0.00 0.00 35.52 4.16
430 431 1.133199 ACTGATGGGCTTTTGGAACCA 60.133 47.619 0.00 0.00 37.41 3.67
431 432 1.632589 ACTGATGGGCTTTTGGAACC 58.367 50.000 0.00 0.00 0.00 3.62
432 433 4.376340 CATACTGATGGGCTTTTGGAAC 57.624 45.455 0.00 0.00 0.00 3.62
444 445 5.277202 CGCATGAAGAAACTCCATACTGATG 60.277 44.000 0.00 0.00 0.00 3.07
445 446 4.813161 CGCATGAAGAAACTCCATACTGAT 59.187 41.667 0.00 0.00 0.00 2.90
446 447 4.183865 CGCATGAAGAAACTCCATACTGA 58.816 43.478 0.00 0.00 0.00 3.41
447 448 3.935203 ACGCATGAAGAAACTCCATACTG 59.065 43.478 0.00 0.00 0.00 2.74
448 449 4.207891 ACGCATGAAGAAACTCCATACT 57.792 40.909 0.00 0.00 0.00 2.12
449 450 4.946784 AACGCATGAAGAAACTCCATAC 57.053 40.909 0.00 0.00 0.00 2.39
450 451 5.957842 AAAACGCATGAAGAAACTCCATA 57.042 34.783 0.00 0.00 0.00 2.74
451 452 4.853924 AAAACGCATGAAGAAACTCCAT 57.146 36.364 0.00 0.00 0.00 3.41
452 453 4.576873 TGTAAAACGCATGAAGAAACTCCA 59.423 37.500 0.00 0.00 0.00 3.86
453 454 4.909880 GTGTAAAACGCATGAAGAAACTCC 59.090 41.667 0.00 0.00 0.00 3.85
454 455 4.909880 GGTGTAAAACGCATGAAGAAACTC 59.090 41.667 0.00 0.00 0.00 3.01
455 456 4.553938 CGGTGTAAAACGCATGAAGAAACT 60.554 41.667 0.00 0.00 0.00 2.66
456 457 3.662186 CGGTGTAAAACGCATGAAGAAAC 59.338 43.478 0.00 0.00 0.00 2.78
457 458 3.560481 TCGGTGTAAAACGCATGAAGAAA 59.440 39.130 0.00 0.00 0.00 2.52
458 459 3.132160 TCGGTGTAAAACGCATGAAGAA 58.868 40.909 0.00 0.00 0.00 2.52
459 460 2.756829 TCGGTGTAAAACGCATGAAGA 58.243 42.857 0.00 0.00 0.00 2.87
460 461 3.740044 ATCGGTGTAAAACGCATGAAG 57.260 42.857 0.00 0.00 0.00 3.02
461 462 4.870991 TCATATCGGTGTAAAACGCATGAA 59.129 37.500 0.00 0.00 32.40 2.57
462 463 4.269123 GTCATATCGGTGTAAAACGCATGA 59.731 41.667 0.00 4.00 32.68 3.07
463 464 4.514506 GTCATATCGGTGTAAAACGCATG 58.485 43.478 0.00 0.00 0.00 4.06
464 465 3.558418 GGTCATATCGGTGTAAAACGCAT 59.442 43.478 0.00 0.00 0.00 4.73
465 466 2.931325 GGTCATATCGGTGTAAAACGCA 59.069 45.455 0.00 0.00 0.00 5.24
466 467 3.192466 AGGTCATATCGGTGTAAAACGC 58.808 45.455 0.00 0.00 0.00 4.84
467 468 6.506827 CGTTTAGGTCATATCGGTGTAAAACG 60.507 42.308 0.00 0.00 39.31 3.60
468 469 6.237915 CCGTTTAGGTCATATCGGTGTAAAAC 60.238 42.308 0.00 0.00 34.38 2.43
469 470 5.811613 CCGTTTAGGTCATATCGGTGTAAAA 59.188 40.000 0.00 0.00 34.38 1.52
470 471 5.350633 CCGTTTAGGTCATATCGGTGTAAA 58.649 41.667 0.00 0.00 34.38 2.01
471 472 4.737352 GCCGTTTAGGTCATATCGGTGTAA 60.737 45.833 0.00 0.00 43.70 2.41
472 473 3.243501 GCCGTTTAGGTCATATCGGTGTA 60.244 47.826 0.00 0.00 43.70 2.90
473 474 2.482490 GCCGTTTAGGTCATATCGGTGT 60.482 50.000 0.00 0.00 43.70 4.16
474 475 2.132762 GCCGTTTAGGTCATATCGGTG 58.867 52.381 0.00 0.00 43.70 4.94
475 476 1.758280 TGCCGTTTAGGTCATATCGGT 59.242 47.619 0.00 0.00 43.70 4.69
476 477 2.223971 ACTGCCGTTTAGGTCATATCGG 60.224 50.000 0.00 0.00 43.70 4.18
477 478 2.794910 CACTGCCGTTTAGGTCATATCG 59.205 50.000 0.00 0.00 43.70 2.92
478 479 2.544267 GCACTGCCGTTTAGGTCATATC 59.456 50.000 0.00 0.00 43.70 1.63
479 480 2.561569 GCACTGCCGTTTAGGTCATAT 58.438 47.619 0.00 0.00 43.70 1.78
480 481 1.406341 GGCACTGCCGTTTAGGTCATA 60.406 52.381 3.73 0.00 39.62 2.15
481 482 0.676782 GGCACTGCCGTTTAGGTCAT 60.677 55.000 3.73 0.00 39.62 3.06
482 483 1.302192 GGCACTGCCGTTTAGGTCA 60.302 57.895 3.73 0.00 39.62 4.02
483 484 3.574780 GGCACTGCCGTTTAGGTC 58.425 61.111 3.73 0.00 39.62 3.85
492 493 3.181333 GCAACTTATTTGTGGCACTGCC 61.181 50.000 19.83 13.68 41.61 4.85
493 494 2.061028 GCAACTTATTTGTGGCACTGC 58.939 47.619 19.83 13.41 36.89 4.40
494 495 3.367992 TGCAACTTATTTGTGGCACTG 57.632 42.857 19.83 7.03 41.46 3.66
509 510 6.037500 TGCAGAGTTGATAATGATAGTGCAAC 59.962 38.462 0.00 0.00 34.44 4.17
510 511 6.114767 TGCAGAGTTGATAATGATAGTGCAA 58.885 36.000 0.00 0.00 34.44 4.08
511 512 5.673514 TGCAGAGTTGATAATGATAGTGCA 58.326 37.500 0.00 0.00 34.96 4.57
512 513 6.649973 AGATGCAGAGTTGATAATGATAGTGC 59.350 38.462 0.00 0.00 0.00 4.40
513 514 8.604640 AAGATGCAGAGTTGATAATGATAGTG 57.395 34.615 0.00 0.00 0.00 2.74
514 515 9.624373 AAAAGATGCAGAGTTGATAATGATAGT 57.376 29.630 0.00 0.00 0.00 2.12
515 516 9.880064 CAAAAGATGCAGAGTTGATAATGATAG 57.120 33.333 0.00 0.00 0.00 2.08
516 517 8.843262 CCAAAAGATGCAGAGTTGATAATGATA 58.157 33.333 0.00 0.00 0.00 2.15
517 518 7.683704 GCCAAAAGATGCAGAGTTGATAATGAT 60.684 37.037 0.00 0.00 0.00 2.45
518 519 6.405065 GCCAAAAGATGCAGAGTTGATAATGA 60.405 38.462 0.00 0.00 0.00 2.57
519 520 5.747197 GCCAAAAGATGCAGAGTTGATAATG 59.253 40.000 0.00 0.00 0.00 1.90
520 521 5.655532 AGCCAAAAGATGCAGAGTTGATAAT 59.344 36.000 0.00 0.00 0.00 1.28
521 522 5.012239 AGCCAAAAGATGCAGAGTTGATAA 58.988 37.500 0.00 0.00 0.00 1.75
522 523 4.592942 AGCCAAAAGATGCAGAGTTGATA 58.407 39.130 0.00 0.00 0.00 2.15
523 524 3.428532 AGCCAAAAGATGCAGAGTTGAT 58.571 40.909 0.00 0.00 0.00 2.57
524 525 2.867624 AGCCAAAAGATGCAGAGTTGA 58.132 42.857 0.00 0.00 0.00 3.18
525 526 3.005050 TGAAGCCAAAAGATGCAGAGTTG 59.995 43.478 0.00 0.00 0.00 3.16
526 527 3.225104 TGAAGCCAAAAGATGCAGAGTT 58.775 40.909 0.00 0.00 0.00 3.01
527 528 2.867624 TGAAGCCAAAAGATGCAGAGT 58.132 42.857 0.00 0.00 0.00 3.24
528 529 3.005050 TGTTGAAGCCAAAAGATGCAGAG 59.995 43.478 0.00 0.00 33.49 3.35
529 530 2.957680 TGTTGAAGCCAAAAGATGCAGA 59.042 40.909 0.00 0.00 33.49 4.26
530 531 3.054878 GTGTTGAAGCCAAAAGATGCAG 58.945 45.455 0.00 0.00 33.49 4.41
531 532 2.694628 AGTGTTGAAGCCAAAAGATGCA 59.305 40.909 0.00 0.00 33.49 3.96
532 533 3.375782 AGTGTTGAAGCCAAAAGATGC 57.624 42.857 0.00 0.00 33.49 3.91
533 534 6.258230 TCATAGTGTTGAAGCCAAAAGATG 57.742 37.500 0.00 0.00 33.49 2.90
534 535 6.899393 TTCATAGTGTTGAAGCCAAAAGAT 57.101 33.333 0.00 0.00 33.49 2.40
535 536 6.899393 ATTCATAGTGTTGAAGCCAAAAGA 57.101 33.333 0.00 0.00 38.90 2.52
536 537 8.246180 ACATATTCATAGTGTTGAAGCCAAAAG 58.754 33.333 0.00 0.00 38.90 2.27
537 538 8.028354 CACATATTCATAGTGTTGAAGCCAAAA 58.972 33.333 0.00 0.00 38.90 2.44
538 539 7.176515 ACACATATTCATAGTGTTGAAGCCAAA 59.823 33.333 0.00 0.00 43.40 3.28
539 540 6.658816 ACACATATTCATAGTGTTGAAGCCAA 59.341 34.615 0.00 0.00 43.40 4.52
540 541 6.179756 ACACATATTCATAGTGTTGAAGCCA 58.820 36.000 0.00 0.00 43.40 4.75
541 542 6.683974 ACACATATTCATAGTGTTGAAGCC 57.316 37.500 0.00 0.00 43.40 4.35
573 574 9.382275 GGTAGTTTTTGGTTAAATACTCCGATA 57.618 33.333 0.00 0.00 38.47 2.92
574 575 7.884354 TGGTAGTTTTTGGTTAAATACTCCGAT 59.116 33.333 0.00 0.00 38.47 4.18
575 576 7.173047 GTGGTAGTTTTTGGTTAAATACTCCGA 59.827 37.037 0.00 0.00 38.47 4.55
576 577 7.041235 TGTGGTAGTTTTTGGTTAAATACTCCG 60.041 37.037 0.00 0.00 38.47 4.63
1597 1599 9.321562 CTGTTCTTTTTCAGTTAACACCTACTA 57.678 33.333 8.61 0.00 0.00 1.82
2365 2412 2.725221 ATTGCCTTGATCCTCTCCAC 57.275 50.000 0.00 0.00 0.00 4.02
2445 2492 1.314534 TGCATGACATTCCAAGGCCG 61.315 55.000 0.00 0.00 0.00 6.13
3074 3228 0.545171 TGGACGATCTCCTAGACGGT 59.455 55.000 11.12 0.00 40.26 4.83
3146 3300 2.430610 GCTGGCTCCTGTCCTCGAT 61.431 63.158 0.00 0.00 0.00 3.59
3155 3309 1.849975 AACTGCAGATGCTGGCTCCT 61.850 55.000 23.35 0.00 43.15 3.69
3187 3341 3.877951 GAGGTAGTCGTCCTCTCCA 57.122 57.895 4.91 0.00 45.56 3.86
3224 3378 1.763655 TGGCGAGCCCTCTGATGAT 60.764 57.895 12.05 0.00 34.56 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.