Multiple sequence alignment - TraesCS7A01G524900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G524900 chr7A 100.000 2798 0 0 1 2798 707620695 707617898 0.000000e+00 5168.0
1 TraesCS7A01G524900 chr7A 94.866 2045 41 28 219 2227 710756940 710758956 0.000000e+00 3136.0
2 TraesCS7A01G524900 chr7A 97.697 304 7 0 2224 2527 710760196 710760499 8.880000e-145 523.0
3 TraesCS7A01G524900 chr7A 94.760 229 10 2 2570 2798 710760483 710760709 3.430000e-94 355.0
4 TraesCS7A01G524900 chr7A 94.167 120 4 1 1 120 710756825 710756941 2.210000e-41 180.0
5 TraesCS7A01G524900 chr7A 93.478 46 3 0 2526 2571 45867784 45867829 5.000000e-08 69.4
6 TraesCS7A01G524900 chr7D 92.658 1866 62 23 381 2213 614889793 614887970 0.000000e+00 2617.0
7 TraesCS7A01G524900 chr7D 94.531 384 15 4 1 381 614890562 614890182 3.100000e-164 588.0
8 TraesCS7A01G524900 chr7D 95.062 162 8 0 2637 2798 614850801 614850640 3.580000e-64 255.0
9 TraesCS7A01G524900 chr7D 100.000 46 0 0 2226 2271 614886817 614886772 4.970000e-13 86.1
10 TraesCS7A01G524900 chr7B 82.326 1539 191 40 712 2226 707623975 707625456 0.000000e+00 1260.0
11 TraesCS7A01G524900 chr7B 87.696 382 32 7 3 381 707612851 707613220 5.540000e-117 431.0
12 TraesCS7A01G524900 chr7B 83.168 101 6 4 1840 1938 707625195 707625286 6.420000e-12 82.4
13 TraesCS7A01G524900 chr7B 95.238 42 2 0 2528 2569 182620933 182620892 1.800000e-07 67.6
14 TraesCS7A01G524900 chr6D 96.000 50 1 1 2527 2575 10434362 10434411 2.310000e-11 80.5
15 TraesCS7A01G524900 chr3B 97.826 46 1 0 2526 2571 597475667 597475712 2.310000e-11 80.5
16 TraesCS7A01G524900 chr3B 97.500 40 1 0 2527 2566 128947251 128947212 5.000000e-08 69.4
17 TraesCS7A01G524900 chr1D 95.556 45 2 0 2527 2571 326287774 326287730 3.870000e-09 73.1
18 TraesCS7A01G524900 chr1A 95.556 45 2 0 2527 2571 412460434 412460390 3.870000e-09 73.1
19 TraesCS7A01G524900 chr5D 97.500 40 1 0 2527 2566 13332409 13332448 5.000000e-08 69.4
20 TraesCS7A01G524900 chr1B 93.478 46 2 1 2527 2571 439847508 439847463 1.800000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G524900 chr7A 707617898 707620695 2797 True 5168.000000 5168 100.000000 1 2798 1 chr7A.!!$R1 2797
1 TraesCS7A01G524900 chr7A 710756825 710760709 3884 False 1048.500000 3136 95.372500 1 2798 4 chr7A.!!$F2 2797
2 TraesCS7A01G524900 chr7D 614886772 614890562 3790 True 1097.033333 2617 95.729667 1 2271 3 chr7D.!!$R2 2270
3 TraesCS7A01G524900 chr7B 707623975 707625456 1481 False 671.200000 1260 82.747000 712 2226 2 chr7B.!!$F2 1514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 963 1.025113 GTACAAAGCGCCCTCCTTCC 61.025 60.0 2.29 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 2397 0.035152 AATGCTGATCTTGCCCACGA 60.035 50.0 8.39 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.048507 GGTCTGGACTAGCTAAATTTACCG 58.951 45.833 0.00 0.00 0.00 4.02
210 211 9.880157 AAACAAAAGGTGTAGATATATACGTGT 57.120 29.630 0.00 0.00 40.60 4.49
211 212 9.880157 AACAAAAGGTGTAGATATATACGTGTT 57.120 29.630 0.00 4.21 40.60 3.32
214 215 9.971922 AAAAGGTGTAGATATATACGTGTTACC 57.028 33.333 0.00 4.79 0.00 2.85
215 216 7.693969 AGGTGTAGATATATACGTGTTACCC 57.306 40.000 0.00 0.00 0.00 3.69
216 217 7.465116 AGGTGTAGATATATACGTGTTACCCT 58.535 38.462 0.00 0.00 0.00 4.34
217 218 7.609532 AGGTGTAGATATATACGTGTTACCCTC 59.390 40.741 0.00 0.00 0.00 4.30
218 219 7.391554 GGTGTAGATATATACGTGTTACCCTCA 59.608 40.741 0.00 0.00 0.00 3.86
219 220 8.954350 GTGTAGATATATACGTGTTACCCTCAT 58.046 37.037 0.00 0.00 0.00 2.90
251 355 5.694006 TGAATTACAAAATCAAGGTTTGGCG 59.306 36.000 2.34 0.00 39.74 5.69
286 390 4.394712 CGGCGAGGTCAGGGCTTT 62.395 66.667 0.00 0.00 0.00 3.51
299 403 3.479269 GCTTTGGCGGTCTCGTCG 61.479 66.667 0.00 0.00 45.11 5.12
334 438 5.107133 CACAATGAAATGAAATCTGGAGCC 58.893 41.667 0.00 0.00 0.00 4.70
462 963 1.025113 GTACAAAGCGCCCTCCTTCC 61.025 60.000 2.29 0.00 0.00 3.46
482 986 6.640907 CCTTCCGAAAAGTATTGGACAAAAAG 59.359 38.462 0.00 0.00 32.38 2.27
483 987 6.079424 TCCGAAAAGTATTGGACAAAAAGG 57.921 37.500 0.00 0.00 0.00 3.11
488 992 8.874816 CGAAAAGTATTGGACAAAAAGGAAAAA 58.125 29.630 0.00 0.00 0.00 1.94
616 1123 6.527372 GGAGTAGTACTCGTTGTTTGATTCTC 59.473 42.308 21.29 1.80 45.96 2.87
617 1124 6.388278 AGTAGTACTCGTTGTTTGATTCTCC 58.612 40.000 0.00 0.00 0.00 3.71
618 1125 4.235360 AGTACTCGTTGTTTGATTCTCCG 58.765 43.478 0.00 0.00 0.00 4.63
1063 1588 0.722799 GCTTGCGCGAAAGAGTGTTC 60.723 55.000 31.02 7.60 0.00 3.18
1132 1657 0.937304 CATCGCCATTACCACCTTCG 59.063 55.000 0.00 0.00 0.00 3.79
1465 1991 3.429141 CTGAGCAGCCGCACCTTG 61.429 66.667 0.00 0.00 42.27 3.61
1620 2146 3.813166 TGATCCGTGGTTTGTTCTTCTTC 59.187 43.478 0.00 0.00 0.00 2.87
1665 2201 2.029518 GGGTTTGCAACAGCAGGC 59.970 61.111 0.00 0.00 39.82 4.85
1741 2277 3.243367 CCTTGCTTTCGTGTTGATTGGAA 60.243 43.478 0.00 0.00 0.00 3.53
1860 2396 3.777106 AGGTCTTCAAAGCTGATGTCA 57.223 42.857 0.00 0.00 0.00 3.58
1861 2397 4.298103 AGGTCTTCAAAGCTGATGTCAT 57.702 40.909 0.00 0.00 0.00 3.06
2020 2577 2.484264 AGTTTAAGCGGAATCTGTGTGC 59.516 45.455 0.00 0.00 0.00 4.57
2053 2610 7.229907 AGTTAATTTGTACCGGTTGAAACTCAT 59.770 33.333 15.04 0.00 0.00 2.90
2054 2611 8.505625 GTTAATTTGTACCGGTTGAAACTCATA 58.494 33.333 15.04 2.17 0.00 2.15
2055 2612 7.513371 AATTTGTACCGGTTGAAACTCATAA 57.487 32.000 15.04 0.00 0.00 1.90
2056 2613 6.548441 TTTGTACCGGTTGAAACTCATAAG 57.452 37.500 15.04 0.00 0.00 1.73
2082 2639 9.708092 GTACTATGTAATCTTCCTTGTAATCCC 57.292 37.037 0.00 0.00 0.00 3.85
2091 2648 6.650120 TCTTCCTTGTAATCCCTTGTATGAC 58.350 40.000 0.00 0.00 0.00 3.06
2132 2692 8.743099 GCAACTATTTACTTCACTGTTTCAAAC 58.257 33.333 0.00 0.00 0.00 2.93
2133 2693 9.781834 CAACTATTTACTTCACTGTTTCAAACA 57.218 29.630 2.24 2.24 39.52 2.83
2167 2736 5.966636 TTTACTTATGTATGCTGTGCGAG 57.033 39.130 0.00 0.00 0.00 5.03
2198 2767 1.401905 CCCTGCTAATGTCGGAAAAGC 59.598 52.381 0.00 0.00 0.00 3.51
2327 4154 7.158021 TGCCAGATTTTAATTTCGAACCAAAT 58.842 30.769 0.00 0.07 0.00 2.32
2396 4223 1.490490 TGGACACTCAAACTGAAGCCT 59.510 47.619 0.00 0.00 0.00 4.58
2406 4233 7.173218 CACTCAAACTGAAGCCTCATAAACTAA 59.827 37.037 0.00 0.00 0.00 2.24
2437 4264 7.664318 TCTCAAGGGAAAGTTGTTATAAGAACC 59.336 37.037 18.93 6.54 33.06 3.62
2520 4347 8.877864 AGGTTAATTGTGGACAATGATTTCTA 57.122 30.769 5.78 0.00 45.06 2.10
2521 4348 8.739972 AGGTTAATTGTGGACAATGATTTCTAC 58.260 33.333 5.78 0.00 45.06 2.59
2522 4349 8.519526 GGTTAATTGTGGACAATGATTTCTACA 58.480 33.333 5.78 3.72 45.06 2.74
2523 4350 9.906660 GTTAATTGTGGACAATGATTTCTACAA 57.093 29.630 15.51 15.51 45.06 2.41
2526 4353 9.829507 AATTGTGGACAATGATTTCTACAAAAA 57.170 25.926 16.42 3.26 43.69 1.94
2549 4376 3.925688 CACGTGACATATGTGGTAAGC 57.074 47.619 14.43 0.00 41.62 3.09
2550 4377 3.258228 CACGTGACATATGTGGTAAGCA 58.742 45.455 14.43 0.37 41.62 3.91
2551 4378 3.682377 CACGTGACATATGTGGTAAGCAA 59.318 43.478 14.43 0.00 41.62 3.91
2552 4379 4.332543 CACGTGACATATGTGGTAAGCAAT 59.667 41.667 14.43 0.00 41.62 3.56
2553 4380 4.941263 ACGTGACATATGTGGTAAGCAATT 59.059 37.500 14.43 0.00 0.00 2.32
2554 4381 5.414454 ACGTGACATATGTGGTAAGCAATTT 59.586 36.000 14.43 0.00 0.00 1.82
2555 4382 6.596106 ACGTGACATATGTGGTAAGCAATTTA 59.404 34.615 14.43 0.00 0.00 1.40
2556 4383 7.119992 ACGTGACATATGTGGTAAGCAATTTAA 59.880 33.333 14.43 0.00 0.00 1.52
2557 4384 7.965655 CGTGACATATGTGGTAAGCAATTTAAA 59.034 33.333 14.43 0.00 0.00 1.52
2558 4385 9.072294 GTGACATATGTGGTAAGCAATTTAAAC 57.928 33.333 14.43 0.00 0.00 2.01
2559 4386 9.019656 TGACATATGTGGTAAGCAATTTAAACT 57.980 29.630 14.43 0.00 0.00 2.66
2565 4392 8.410673 TGTGGTAAGCAATTTAAACTAATCCA 57.589 30.769 0.00 0.00 0.00 3.41
2566 4393 8.861086 TGTGGTAAGCAATTTAAACTAATCCAA 58.139 29.630 0.00 0.00 0.00 3.53
2567 4394 9.699703 GTGGTAAGCAATTTAAACTAATCCAAA 57.300 29.630 0.00 0.00 0.00 3.28
2618 4445 1.130561 GCAGATTGTACGCCAAGAACC 59.869 52.381 0.00 0.00 36.25 3.62
2620 4447 1.092348 GATTGTACGCCAAGAACCCC 58.908 55.000 0.00 0.00 36.25 4.95
2621 4448 0.402504 ATTGTACGCCAAGAACCCCA 59.597 50.000 0.00 0.00 36.25 4.96
2622 4449 0.250553 TTGTACGCCAAGAACCCCAG 60.251 55.000 0.00 0.00 0.00 4.45
2624 4451 0.250597 GTACGCCAAGAACCCCAGTT 60.251 55.000 0.00 0.00 39.54 3.16
2625 4452 1.002315 GTACGCCAAGAACCCCAGTTA 59.998 52.381 0.00 0.00 35.94 2.24
2626 4453 0.696501 ACGCCAAGAACCCCAGTTAT 59.303 50.000 0.00 0.00 35.94 1.89
2627 4454 1.910671 ACGCCAAGAACCCCAGTTATA 59.089 47.619 0.00 0.00 35.94 0.98
2628 4455 2.508300 ACGCCAAGAACCCCAGTTATAT 59.492 45.455 0.00 0.00 35.94 0.86
2660 4487 5.067283 TCTGGATCAATGCATGAACATCTTG 59.933 40.000 0.00 0.00 42.54 3.02
2661 4488 4.951094 TGGATCAATGCATGAACATCTTGA 59.049 37.500 0.00 0.00 42.54 3.02
2736 4563 5.968387 ATCTTAACGTGCAGCACTATTAC 57.032 39.130 23.15 0.00 31.34 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.048507 CCGGTAAATTTAGCTAGTCCAGAC 58.951 45.833 21.54 0.00 0.00 3.51
27 28 1.532437 GCATGCAACTTTTTCCTTGCC 59.468 47.619 14.21 0.00 41.83 4.52
59 60 9.683651 GTTCAAGCAAAACTTTTTGTAACATAC 57.316 29.630 14.35 4.87 46.92 2.39
60 61 9.424319 TGTTCAAGCAAAACTTTTTGTAACATA 57.576 25.926 14.35 0.91 46.92 2.29
61 62 8.316640 TGTTCAAGCAAAACTTTTTGTAACAT 57.683 26.923 14.35 0.00 46.92 2.71
184 185 9.880157 ACACGTATATATCTACACCTTTTGTTT 57.120 29.630 0.00 0.00 39.91 2.83
185 186 9.880157 AACACGTATATATCTACACCTTTTGTT 57.120 29.630 0.00 0.00 39.91 2.83
188 189 9.971922 GGTAACACGTATATATCTACACCTTTT 57.028 33.333 0.00 0.00 0.00 2.27
189 190 8.579863 GGGTAACACGTATATATCTACACCTTT 58.420 37.037 0.00 0.00 39.74 3.11
190 191 7.946776 AGGGTAACACGTATATATCTACACCTT 59.053 37.037 0.00 0.00 39.74 3.50
191 192 7.465116 AGGGTAACACGTATATATCTACACCT 58.535 38.462 0.00 0.00 39.74 4.00
192 193 7.391554 TGAGGGTAACACGTATATATCTACACC 59.608 40.741 0.00 0.00 39.74 4.16
193 194 8.327941 TGAGGGTAACACGTATATATCTACAC 57.672 38.462 0.00 0.00 39.74 2.90
194 195 8.953313 CATGAGGGTAACACGTATATATCTACA 58.047 37.037 0.00 0.00 39.74 2.74
195 196 8.954350 ACATGAGGGTAACACGTATATATCTAC 58.046 37.037 0.00 0.00 39.74 2.59
196 197 9.170734 GACATGAGGGTAACACGTATATATCTA 57.829 37.037 0.00 0.00 39.74 1.98
197 198 7.148289 CGACATGAGGGTAACACGTATATATCT 60.148 40.741 0.00 0.00 39.74 1.98
198 199 6.965500 CGACATGAGGGTAACACGTATATATC 59.035 42.308 0.00 0.00 39.74 1.63
199 200 6.656270 TCGACATGAGGGTAACACGTATATAT 59.344 38.462 0.00 0.00 39.74 0.86
200 201 5.997129 TCGACATGAGGGTAACACGTATATA 59.003 40.000 0.00 0.00 39.74 0.86
201 202 4.823442 TCGACATGAGGGTAACACGTATAT 59.177 41.667 0.00 0.00 39.74 0.86
202 203 4.198530 TCGACATGAGGGTAACACGTATA 58.801 43.478 0.00 0.00 39.74 1.47
203 204 3.018856 TCGACATGAGGGTAACACGTAT 58.981 45.455 0.00 0.00 39.74 3.06
204 205 2.435422 TCGACATGAGGGTAACACGTA 58.565 47.619 0.00 0.00 39.74 3.57
205 206 1.250328 TCGACATGAGGGTAACACGT 58.750 50.000 0.00 0.00 39.74 4.49
206 207 2.579207 ATCGACATGAGGGTAACACG 57.421 50.000 0.00 0.00 39.74 4.49
207 208 4.250464 TCAAATCGACATGAGGGTAACAC 58.750 43.478 0.00 0.00 39.74 3.32
208 209 4.545208 TCAAATCGACATGAGGGTAACA 57.455 40.909 0.00 0.00 39.74 2.41
209 210 6.436843 AATTCAAATCGACATGAGGGTAAC 57.563 37.500 0.00 0.00 0.00 2.50
210 211 7.106890 TGTAATTCAAATCGACATGAGGGTAA 58.893 34.615 0.00 0.00 0.00 2.85
211 212 6.645306 TGTAATTCAAATCGACATGAGGGTA 58.355 36.000 0.00 0.00 0.00 3.69
212 213 5.496556 TGTAATTCAAATCGACATGAGGGT 58.503 37.500 0.00 0.00 0.00 4.34
213 214 6.435430 TTGTAATTCAAATCGACATGAGGG 57.565 37.500 0.00 0.00 32.64 4.30
214 215 8.915871 ATTTTGTAATTCAAATCGACATGAGG 57.084 30.769 0.00 0.00 44.15 3.86
215 216 9.558648 TGATTTTGTAATTCAAATCGACATGAG 57.441 29.630 0.00 0.00 44.15 2.90
216 217 9.905171 TTGATTTTGTAATTCAAATCGACATGA 57.095 25.926 0.00 0.00 44.15 3.07
218 219 9.357652 CCTTGATTTTGTAATTCAAATCGACAT 57.642 29.630 0.00 1.45 44.15 3.06
219 220 8.356657 ACCTTGATTTTGTAATTCAAATCGACA 58.643 29.630 0.00 0.00 44.15 4.35
251 355 2.103042 GGTCGAGCACTGCCACATC 61.103 63.158 10.30 0.00 0.00 3.06
299 403 0.524414 TCATTGTGCTCACATGCAGC 59.476 50.000 9.82 9.82 44.20 5.25
462 963 7.995463 TTTCCTTTTTGTCCAATACTTTTCG 57.005 32.000 0.00 0.00 0.00 3.46
482 986 1.536073 GCTGCCCCCACTCTTTTTCC 61.536 60.000 0.00 0.00 0.00 3.13
483 987 0.540597 AGCTGCCCCCACTCTTTTTC 60.541 55.000 0.00 0.00 0.00 2.29
564 1068 4.139420 CGCGAACGCAGCCTGAAG 62.139 66.667 18.69 0.00 42.06 3.02
578 1082 0.938713 CTACTCCACTACTCCTCGCG 59.061 60.000 0.00 0.00 0.00 5.87
1132 1657 1.613630 TGGAGGAGGAGTTGGAGGC 60.614 63.158 0.00 0.00 0.00 4.70
1543 2069 4.441495 GCCTTGTTTCTGCACTAACCTTTT 60.441 41.667 4.27 0.00 0.00 2.27
1620 2146 0.321671 TCTGGGAGCAAAGAACCGAG 59.678 55.000 0.00 0.00 0.00 4.63
1665 2201 6.719370 ACTCTATCTGCCTGGAGTAATAGAAG 59.281 42.308 0.00 2.15 35.46 2.85
1741 2277 0.319083 TGGTACGGCAGTGAAACGAT 59.681 50.000 0.00 0.00 45.86 3.73
1860 2396 0.182061 ATGCTGATCTTGCCCACGAT 59.818 50.000 8.39 0.00 0.00 3.73
1861 2397 0.035152 AATGCTGATCTTGCCCACGA 60.035 50.000 8.39 0.00 0.00 4.35
2020 2577 5.343249 ACCGGTACAAATTAACTACTAGCG 58.657 41.667 4.49 0.00 0.00 4.26
2056 2613 9.708092 GGGATTACAAGGAAGATTACATAGTAC 57.292 37.037 0.00 0.00 0.00 2.73
2271 4098 5.807909 TCCCCACCAAAGTGTTTACTATAC 58.192 41.667 0.00 0.00 42.88 1.47
2274 4101 3.073356 CCTCCCCACCAAAGTGTTTACTA 59.927 47.826 0.00 0.00 42.88 1.82
2437 4264 8.224389 TCCAATATTTCCATGTGTGATAACAG 57.776 34.615 0.00 0.00 32.52 3.16
2523 4350 4.497473 CCACATATGTCACGTGGTTTTT 57.503 40.909 17.00 0.00 44.27 1.94
2529 4356 3.258228 TGCTTACCACATATGTCACGTG 58.742 45.455 9.94 9.94 0.00 4.49
2530 4357 3.603158 TGCTTACCACATATGTCACGT 57.397 42.857 5.07 5.26 0.00 4.49
2531 4358 5.484173 AATTGCTTACCACATATGTCACG 57.516 39.130 5.07 0.00 0.00 4.35
2532 4359 9.072294 GTTTAAATTGCTTACCACATATGTCAC 57.928 33.333 5.07 0.00 0.00 3.67
2533 4360 9.019656 AGTTTAAATTGCTTACCACATATGTCA 57.980 29.630 5.07 0.00 0.00 3.58
2539 4366 9.030452 TGGATTAGTTTAAATTGCTTACCACAT 57.970 29.630 0.00 0.00 0.00 3.21
2540 4367 8.410673 TGGATTAGTTTAAATTGCTTACCACA 57.589 30.769 0.00 0.00 0.00 4.17
2541 4368 9.699703 TTTGGATTAGTTTAAATTGCTTACCAC 57.300 29.630 0.00 0.00 0.00 4.16
2574 4401 7.507616 TGCCTTCCCTATTTCTTTTTGTAGAAA 59.492 33.333 0.00 0.00 45.35 2.52
2575 4402 7.007723 TGCCTTCCCTATTTCTTTTTGTAGAA 58.992 34.615 0.00 0.00 32.50 2.10
2576 4403 6.548321 TGCCTTCCCTATTTCTTTTTGTAGA 58.452 36.000 0.00 0.00 0.00 2.59
2577 4404 6.659242 TCTGCCTTCCCTATTTCTTTTTGTAG 59.341 38.462 0.00 0.00 0.00 2.74
2578 4405 6.548321 TCTGCCTTCCCTATTTCTTTTTGTA 58.452 36.000 0.00 0.00 0.00 2.41
2579 4406 5.393866 TCTGCCTTCCCTATTTCTTTTTGT 58.606 37.500 0.00 0.00 0.00 2.83
2627 4454 9.695155 TTCATGCATTGATCCAGATATGATAAT 57.305 29.630 0.00 0.00 33.34 1.28
2628 4455 8.953313 GTTCATGCATTGATCCAGATATGATAA 58.047 33.333 0.00 0.00 33.34 1.75
2660 4487 6.932356 TTCATGTTTGCTTGGATCTAGATC 57.068 37.500 22.41 22.41 37.11 2.75
2661 4488 7.707624 TTTTCATGTTTGCTTGGATCTAGAT 57.292 32.000 4.47 4.47 0.00 1.98
2712 4539 7.036829 TGTAATAGTGCTGCACGTTAAGATTA 58.963 34.615 25.39 18.20 39.64 1.75
2758 4585 6.815142 AGAATTTATTTTGGCATTGCTCAGTC 59.185 34.615 8.82 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.