Multiple sequence alignment - TraesCS7A01G524100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G524100 chr7A 100.000 3059 0 0 1 3059 706441125 706444183 0.000000e+00 5650.0
1 TraesCS7A01G524100 chr7A 98.829 2732 30 1 1 2730 694028222 694030953 0.000000e+00 4867.0
2 TraesCS7A01G524100 chr3B 98.646 2733 20 2 1 2731 607815311 607818028 0.000000e+00 4826.0
3 TraesCS7A01G524100 chr3B 95.936 2731 89 9 1 2728 821050065 821052776 0.000000e+00 4409.0
4 TraesCS7A01G524100 chr7B 98.571 2730 33 2 1 2728 581347568 581344843 0.000000e+00 4820.0
5 TraesCS7A01G524100 chr7B 95.812 2197 79 8 535 2730 297120954 297118770 0.000000e+00 3535.0
6 TraesCS7A01G524100 chr7B 96.276 537 17 2 3 537 297141759 297141224 0.000000e+00 878.0
7 TraesCS7A01G524100 chr1A 98.770 2684 31 1 1 2682 58021800 58024483 0.000000e+00 4772.0
8 TraesCS7A01G524100 chr1A 99.062 2558 21 2 1 2556 58027040 58024484 0.000000e+00 4588.0
9 TraesCS7A01G524100 chr1A 94.403 1072 33 9 1659 2728 487468228 487469274 0.000000e+00 1622.0
10 TraesCS7A01G524100 chr1A 97.143 35 0 1 760 793 487467997 487468031 1.180000e-04 58.4
11 TraesCS7A01G524100 chr1B 93.953 2150 111 8 1 2140 499020714 499018574 0.000000e+00 3232.0
12 TraesCS7A01G524100 chr6B 85.971 1946 201 41 804 2727 654600210 654602105 0.000000e+00 2015.0
13 TraesCS7A01G524100 chrUn 93.965 1193 41 8 1469 2655 94940007 94938840 0.000000e+00 1775.0
14 TraesCS7A01G524100 chrUn 96.519 316 9 1 4 317 94948221 94947906 3.500000e-144 521.0
15 TraesCS7A01G524100 chr5B 94.815 1080 28 10 1659 2736 491653972 491652919 0.000000e+00 1659.0
16 TraesCS7A01G524100 chr4D 90.156 1026 87 8 806 1828 506088862 506087848 0.000000e+00 1323.0
17 TraesCS7A01G524100 chr4D 91.468 586 38 4 164 738 506089458 506088874 0.000000e+00 795.0
18 TraesCS7A01G524100 chr4D 92.763 304 15 1 2428 2731 366217973 366218269 1.680000e-117 433.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G524100 chr7A 706441125 706444183 3058 False 5650.0 5650 100.000 1 3059 1 chr7A.!!$F2 3058
1 TraesCS7A01G524100 chr7A 694028222 694030953 2731 False 4867.0 4867 98.829 1 2730 1 chr7A.!!$F1 2729
2 TraesCS7A01G524100 chr3B 607815311 607818028 2717 False 4826.0 4826 98.646 1 2731 1 chr3B.!!$F1 2730
3 TraesCS7A01G524100 chr3B 821050065 821052776 2711 False 4409.0 4409 95.936 1 2728 1 chr3B.!!$F2 2727
4 TraesCS7A01G524100 chr7B 581344843 581347568 2725 True 4820.0 4820 98.571 1 2728 1 chr7B.!!$R3 2727
5 TraesCS7A01G524100 chr7B 297118770 297120954 2184 True 3535.0 3535 95.812 535 2730 1 chr7B.!!$R1 2195
6 TraesCS7A01G524100 chr7B 297141224 297141759 535 True 878.0 878 96.276 3 537 1 chr7B.!!$R2 534
7 TraesCS7A01G524100 chr1A 58021800 58024483 2683 False 4772.0 4772 98.770 1 2682 1 chr1A.!!$F1 2681
8 TraesCS7A01G524100 chr1A 58024484 58027040 2556 True 4588.0 4588 99.062 1 2556 1 chr1A.!!$R1 2555
9 TraesCS7A01G524100 chr1A 487467997 487469274 1277 False 840.2 1622 95.773 760 2728 2 chr1A.!!$F2 1968
10 TraesCS7A01G524100 chr1B 499018574 499020714 2140 True 3232.0 3232 93.953 1 2140 1 chr1B.!!$R1 2139
11 TraesCS7A01G524100 chr6B 654600210 654602105 1895 False 2015.0 2015 85.971 804 2727 1 chr6B.!!$F1 1923
12 TraesCS7A01G524100 chrUn 94938840 94940007 1167 True 1775.0 1775 93.965 1469 2655 1 chrUn.!!$R1 1186
13 TraesCS7A01G524100 chr5B 491652919 491653972 1053 True 1659.0 1659 94.815 1659 2736 1 chr5B.!!$R1 1077
14 TraesCS7A01G524100 chr4D 506087848 506089458 1610 True 1059.0 1323 90.812 164 1828 2 chr4D.!!$R1 1664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 650 0.108138 CGTTTACCAGGAGAGCCAGG 60.108 60.0 0.0 0.0 45.91 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 2754 0.393944 GCCTTAGGTTAGGTGTGGCC 60.394 60.0 0.0 0.0 37.63 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
424 427 3.440522 GCCATTCCTCACTTAGAACAACC 59.559 47.826 0.00 0.00 0.00 3.77
527 530 7.517321 AGTAAAAATTGTGTTTGCTTGTTGTG 58.483 30.769 0.00 0.00 27.93 3.33
647 650 0.108138 CGTTTACCAGGAGAGCCAGG 60.108 60.000 0.00 0.00 45.91 4.45
728 731 8.552865 CAGCTCAAGATCAAGATGATTAAGAAG 58.447 37.037 0.00 0.00 37.20 2.85
729 732 8.266473 AGCTCAAGATCAAGATGATTAAGAAGT 58.734 33.333 0.00 0.00 37.20 3.01
730 733 8.891720 GCTCAAGATCAAGATGATTAAGAAGTT 58.108 33.333 0.00 0.00 37.20 2.66
744 747 9.817809 TGATTAAGAAGTTAGTATGTAAGGCTG 57.182 33.333 0.00 0.00 0.00 4.85
747 750 9.817809 TTAAGAAGTTAGTATGTAAGGCTGATG 57.182 33.333 0.00 0.00 0.00 3.07
748 751 7.425224 AGAAGTTAGTATGTAAGGCTGATGT 57.575 36.000 0.00 0.00 0.00 3.06
749 752 7.852263 AGAAGTTAGTATGTAAGGCTGATGTT 58.148 34.615 0.00 0.00 0.00 2.71
754 757 5.371526 AGTATGTAAGGCTGATGTTGATGG 58.628 41.667 0.00 0.00 0.00 3.51
755 758 3.003394 TGTAAGGCTGATGTTGATGGG 57.997 47.619 0.00 0.00 0.00 4.00
758 761 2.610438 AGGCTGATGTTGATGGGTTT 57.390 45.000 0.00 0.00 0.00 3.27
760 763 4.046286 AGGCTGATGTTGATGGGTTTTA 57.954 40.909 0.00 0.00 0.00 1.52
762 765 5.025453 AGGCTGATGTTGATGGGTTTTATT 58.975 37.500 0.00 0.00 0.00 1.40
763 766 5.484998 AGGCTGATGTTGATGGGTTTTATTT 59.515 36.000 0.00 0.00 0.00 1.40
801 898 5.523916 GTCTGTTTGAAACTAGAGTTCTGCA 59.476 40.000 9.69 0.00 37.25 4.41
1947 2060 3.550820 TGTTGGTGTGCACTTATCTTGT 58.449 40.909 19.41 0.00 0.00 3.16
2245 2395 8.671921 AGAACTTGTGTTATTGCTATGAATGAG 58.328 33.333 0.00 0.00 36.39 2.90
2288 2442 3.006940 TGGACGAAACTTGCACATATCC 58.993 45.455 0.00 0.00 0.00 2.59
2598 2754 0.028770 ACACACGCCACACAAAATCG 59.971 50.000 0.00 0.00 0.00 3.34
2731 2887 0.603065 CAACCAAACAGCCCCTAAGC 59.397 55.000 0.00 0.00 0.00 3.09
2732 2888 0.482887 AACCAAACAGCCCCTAAGCT 59.517 50.000 0.00 0.00 46.45 3.74
2733 2889 0.038310 ACCAAACAGCCCCTAAGCTC 59.962 55.000 0.00 0.00 42.61 4.09
2735 2891 1.272147 CCAAACAGCCCCTAAGCTCTT 60.272 52.381 0.00 0.00 42.61 2.85
2736 2892 1.815003 CAAACAGCCCCTAAGCTCTTG 59.185 52.381 0.00 0.00 42.61 3.02
2737 2893 1.068121 AACAGCCCCTAAGCTCTTGT 58.932 50.000 0.00 0.00 42.61 3.16
2738 2894 0.326264 ACAGCCCCTAAGCTCTTGTG 59.674 55.000 0.00 0.00 42.61 3.33
2739 2895 0.615331 CAGCCCCTAAGCTCTTGTGA 59.385 55.000 0.00 0.00 42.61 3.58
2740 2896 0.615850 AGCCCCTAAGCTCTTGTGAC 59.384 55.000 0.00 0.00 39.48 3.67
2741 2897 0.741221 GCCCCTAAGCTCTTGTGACG 60.741 60.000 0.00 0.00 0.00 4.35
2742 2898 0.741221 CCCCTAAGCTCTTGTGACGC 60.741 60.000 0.00 0.00 0.00 5.19
2743 2899 0.741221 CCCTAAGCTCTTGTGACGCC 60.741 60.000 0.00 0.00 0.00 5.68
2744 2900 0.741221 CCTAAGCTCTTGTGACGCCC 60.741 60.000 0.00 0.00 0.00 6.13
2745 2901 0.247736 CTAAGCTCTTGTGACGCCCT 59.752 55.000 0.00 0.00 0.00 5.19
2746 2902 0.685097 TAAGCTCTTGTGACGCCCTT 59.315 50.000 0.00 0.00 0.00 3.95
2747 2903 0.179018 AAGCTCTTGTGACGCCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
2748 2904 0.179018 AGCTCTTGTGACGCCCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
2749 2905 0.238553 GCTCTTGTGACGCCCTTTTC 59.761 55.000 0.00 0.00 0.00 2.29
2750 2906 0.875059 CTCTTGTGACGCCCTTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
2751 2907 0.181587 TCTTGTGACGCCCTTTTCCA 59.818 50.000 0.00 0.00 0.00 3.53
2752 2908 1.028905 CTTGTGACGCCCTTTTCCAA 58.971 50.000 0.00 0.00 0.00 3.53
2753 2909 1.407258 CTTGTGACGCCCTTTTCCAAA 59.593 47.619 0.00 0.00 0.00 3.28
2754 2910 1.475403 TGTGACGCCCTTTTCCAAAA 58.525 45.000 0.00 0.00 0.00 2.44
2755 2911 1.825474 TGTGACGCCCTTTTCCAAAAA 59.175 42.857 0.00 0.00 0.00 1.94
2776 2932 2.036556 AAAGCTTTTGTCATGCGTCG 57.963 45.000 5.69 0.00 0.00 5.12
2777 2933 1.225855 AAGCTTTTGTCATGCGTCGA 58.774 45.000 0.00 0.00 0.00 4.20
2778 2934 1.442769 AGCTTTTGTCATGCGTCGAT 58.557 45.000 0.00 0.00 0.00 3.59
2779 2935 1.806542 AGCTTTTGTCATGCGTCGATT 59.193 42.857 0.00 0.00 0.00 3.34
2780 2936 3.000041 AGCTTTTGTCATGCGTCGATTA 59.000 40.909 0.00 0.00 0.00 1.75
2781 2937 3.062639 AGCTTTTGTCATGCGTCGATTAG 59.937 43.478 0.00 0.00 0.00 1.73
2782 2938 3.062099 GCTTTTGTCATGCGTCGATTAGA 59.938 43.478 0.00 0.00 0.00 2.10
2783 2939 4.780324 GCTTTTGTCATGCGTCGATTAGAG 60.780 45.833 0.00 0.00 0.00 2.43
2784 2940 3.775661 TTGTCATGCGTCGATTAGAGA 57.224 42.857 0.00 0.00 0.00 3.10
2785 2941 3.990318 TGTCATGCGTCGATTAGAGAT 57.010 42.857 0.00 0.00 0.00 2.75
2786 2942 3.632189 TGTCATGCGTCGATTAGAGATG 58.368 45.455 0.00 0.00 0.00 2.90
2787 2943 3.066760 TGTCATGCGTCGATTAGAGATGT 59.933 43.478 0.00 0.00 0.00 3.06
2788 2944 4.045104 GTCATGCGTCGATTAGAGATGTT 58.955 43.478 0.00 0.00 0.00 2.71
2789 2945 4.147306 GTCATGCGTCGATTAGAGATGTTC 59.853 45.833 0.00 0.00 0.00 3.18
2790 2946 3.079960 TGCGTCGATTAGAGATGTTCC 57.920 47.619 0.00 0.00 0.00 3.62
2791 2947 2.688446 TGCGTCGATTAGAGATGTTCCT 59.312 45.455 0.00 0.00 0.00 3.36
2792 2948 3.881089 TGCGTCGATTAGAGATGTTCCTA 59.119 43.478 0.00 0.00 0.00 2.94
2793 2949 4.023963 TGCGTCGATTAGAGATGTTCCTAG 60.024 45.833 0.00 0.00 0.00 3.02
2794 2950 4.468643 CGTCGATTAGAGATGTTCCTAGC 58.531 47.826 0.00 0.00 0.00 3.42
2795 2951 4.023963 CGTCGATTAGAGATGTTCCTAGCA 60.024 45.833 0.00 0.00 0.00 3.49
2796 2952 5.335269 CGTCGATTAGAGATGTTCCTAGCAT 60.335 44.000 0.00 0.00 0.00 3.79
2797 2953 6.128254 CGTCGATTAGAGATGTTCCTAGCATA 60.128 42.308 0.00 0.00 0.00 3.14
2798 2954 7.024768 GTCGATTAGAGATGTTCCTAGCATAC 58.975 42.308 0.00 0.00 0.00 2.39
2799 2955 6.715264 TCGATTAGAGATGTTCCTAGCATACA 59.285 38.462 0.00 0.00 0.00 2.29
2800 2956 7.230712 TCGATTAGAGATGTTCCTAGCATACAA 59.769 37.037 0.00 0.00 0.00 2.41
2801 2957 7.867909 CGATTAGAGATGTTCCTAGCATACAAA 59.132 37.037 0.00 0.00 0.00 2.83
2802 2958 9.202273 GATTAGAGATGTTCCTAGCATACAAAG 57.798 37.037 0.00 0.00 0.00 2.77
2803 2959 5.923204 AGAGATGTTCCTAGCATACAAAGG 58.077 41.667 0.00 0.00 0.00 3.11
2804 2960 4.455606 AGATGTTCCTAGCATACAAAGGC 58.544 43.478 0.00 0.00 0.00 4.35
2805 2961 3.712016 TGTTCCTAGCATACAAAGGCA 57.288 42.857 0.00 0.00 33.96 4.75
2806 2962 3.609853 TGTTCCTAGCATACAAAGGCAG 58.390 45.455 0.00 0.00 33.96 4.85
2807 2963 2.332063 TCCTAGCATACAAAGGCAGC 57.668 50.000 0.00 0.00 33.96 5.25
2808 2964 0.940126 CCTAGCATACAAAGGCAGCG 59.060 55.000 0.00 0.00 33.96 5.18
2809 2965 0.940126 CTAGCATACAAAGGCAGCGG 59.060 55.000 0.00 0.00 33.96 5.52
2810 2966 0.539518 TAGCATACAAAGGCAGCGGA 59.460 50.000 0.00 0.00 33.96 5.54
2811 2967 0.322456 AGCATACAAAGGCAGCGGAA 60.322 50.000 0.00 0.00 33.96 4.30
2812 2968 0.740737 GCATACAAAGGCAGCGGAAT 59.259 50.000 0.00 0.00 31.14 3.01
2813 2969 1.534595 GCATACAAAGGCAGCGGAATG 60.535 52.381 0.00 0.00 31.14 2.67
2814 2970 0.740737 ATACAAAGGCAGCGGAATGC 59.259 50.000 0.00 0.00 45.74 3.56
2824 2980 2.669419 GCGGAATGCAGGAAAATGC 58.331 52.632 0.00 0.00 46.68 3.56
2835 2991 5.989551 GCAGGAAAATGCAAAAGAGAAAA 57.010 34.783 0.00 0.00 45.77 2.29
2836 2992 6.549912 GCAGGAAAATGCAAAAGAGAAAAT 57.450 33.333 0.00 0.00 45.77 1.82
2837 2993 7.656707 GCAGGAAAATGCAAAAGAGAAAATA 57.343 32.000 0.00 0.00 45.77 1.40
2838 2994 8.086851 GCAGGAAAATGCAAAAGAGAAAATAA 57.913 30.769 0.00 0.00 45.77 1.40
2839 2995 8.225777 GCAGGAAAATGCAAAAGAGAAAATAAG 58.774 33.333 0.00 0.00 45.77 1.73
2840 2996 9.480053 CAGGAAAATGCAAAAGAGAAAATAAGA 57.520 29.630 0.00 0.00 0.00 2.10
2844 3000 9.440773 AAAATGCAAAAGAGAAAATAAGATCCC 57.559 29.630 0.00 0.00 0.00 3.85
2845 3001 7.722949 ATGCAAAAGAGAAAATAAGATCCCA 57.277 32.000 0.00 0.00 0.00 4.37
2846 3002 7.537596 TGCAAAAGAGAAAATAAGATCCCAA 57.462 32.000 0.00 0.00 0.00 4.12
2847 3003 7.605449 TGCAAAAGAGAAAATAAGATCCCAAG 58.395 34.615 0.00 0.00 0.00 3.61
2848 3004 7.451255 TGCAAAAGAGAAAATAAGATCCCAAGA 59.549 33.333 0.00 0.00 0.00 3.02
2849 3005 7.757173 GCAAAAGAGAAAATAAGATCCCAAGAC 59.243 37.037 0.00 0.00 0.00 3.01
2850 3006 9.018582 CAAAAGAGAAAATAAGATCCCAAGACT 57.981 33.333 0.00 0.00 0.00 3.24
2851 3007 8.800370 AAAGAGAAAATAAGATCCCAAGACTC 57.200 34.615 0.00 0.00 0.00 3.36
2852 3008 6.894682 AGAGAAAATAAGATCCCAAGACTCC 58.105 40.000 0.00 0.00 0.00 3.85
2853 3009 6.445139 AGAGAAAATAAGATCCCAAGACTCCA 59.555 38.462 0.00 0.00 0.00 3.86
2854 3010 7.032598 AGAAAATAAGATCCCAAGACTCCAA 57.967 36.000 0.00 0.00 0.00 3.53
2855 3011 7.470192 AGAAAATAAGATCCCAAGACTCCAAA 58.530 34.615 0.00 0.00 0.00 3.28
2856 3012 7.613411 AGAAAATAAGATCCCAAGACTCCAAAG 59.387 37.037 0.00 0.00 0.00 2.77
2857 3013 6.394345 AATAAGATCCCAAGACTCCAAAGT 57.606 37.500 0.00 0.00 38.88 2.66
2858 3014 3.710209 AGATCCCAAGACTCCAAAGTG 57.290 47.619 0.00 0.00 35.28 3.16
2859 3015 2.087646 GATCCCAAGACTCCAAAGTGC 58.912 52.381 0.00 0.00 35.28 4.40
2860 3016 0.843309 TCCCAAGACTCCAAAGTGCA 59.157 50.000 0.00 0.00 35.28 4.57
2861 3017 0.954452 CCCAAGACTCCAAAGTGCAC 59.046 55.000 9.40 9.40 35.28 4.57
2862 3018 0.588252 CCAAGACTCCAAAGTGCACG 59.412 55.000 12.01 0.00 35.28 5.34
2863 3019 1.581934 CAAGACTCCAAAGTGCACGA 58.418 50.000 12.01 1.23 35.28 4.35
2864 3020 1.939934 CAAGACTCCAAAGTGCACGAA 59.060 47.619 12.01 0.00 35.28 3.85
2865 3021 1.871080 AGACTCCAAAGTGCACGAAG 58.129 50.000 12.01 8.16 35.28 3.79
2866 3022 1.139058 AGACTCCAAAGTGCACGAAGT 59.861 47.619 12.01 11.28 37.15 3.01
2867 3023 2.364324 AGACTCCAAAGTGCACGAAGTA 59.636 45.455 12.01 0.00 34.64 2.24
2868 3024 3.128349 GACTCCAAAGTGCACGAAGTAA 58.872 45.455 12.01 0.00 34.64 2.24
2869 3025 3.537580 ACTCCAAAGTGCACGAAGTAAA 58.462 40.909 12.01 0.00 33.77 2.01
2870 3026 4.134563 ACTCCAAAGTGCACGAAGTAAAT 58.865 39.130 12.01 0.00 33.77 1.40
2871 3027 5.302360 ACTCCAAAGTGCACGAAGTAAATA 58.698 37.500 12.01 0.00 33.77 1.40
2872 3028 5.761234 ACTCCAAAGTGCACGAAGTAAATAA 59.239 36.000 12.01 0.00 33.77 1.40
2873 3029 5.992729 TCCAAAGTGCACGAAGTAAATAAC 58.007 37.500 12.01 0.00 41.61 1.89
2874 3030 4.843984 CCAAAGTGCACGAAGTAAATAACG 59.156 41.667 12.01 0.00 41.61 3.18
2875 3031 5.437263 CAAAGTGCACGAAGTAAATAACGT 58.563 37.500 12.01 0.00 41.61 3.99
2876 3032 6.346758 CCAAAGTGCACGAAGTAAATAACGTA 60.347 38.462 12.01 0.00 41.61 3.57
2877 3033 6.385537 AAGTGCACGAAGTAAATAACGTAG 57.614 37.500 12.01 0.00 41.61 3.51
2878 3034 4.860907 AGTGCACGAAGTAAATAACGTAGG 59.139 41.667 12.01 0.00 41.61 3.18
2879 3035 4.858692 GTGCACGAAGTAAATAACGTAGGA 59.141 41.667 0.00 0.00 41.61 2.94
2880 3036 5.345741 GTGCACGAAGTAAATAACGTAGGAA 59.654 40.000 0.00 0.00 41.61 3.36
2881 3037 5.925397 TGCACGAAGTAAATAACGTAGGAAA 59.075 36.000 0.00 0.00 41.61 3.13
2882 3038 6.423302 TGCACGAAGTAAATAACGTAGGAAAA 59.577 34.615 0.00 0.00 41.61 2.29
2883 3039 7.118101 TGCACGAAGTAAATAACGTAGGAAAAT 59.882 33.333 0.00 0.00 41.61 1.82
2884 3040 8.594687 GCACGAAGTAAATAACGTAGGAAAATA 58.405 33.333 0.00 0.00 41.61 1.40
2886 3042 9.305925 ACGAAGTAAATAACGTAGGAAAATAGG 57.694 33.333 0.00 0.00 41.94 2.57
2887 3043 9.520204 CGAAGTAAATAACGTAGGAAAATAGGA 57.480 33.333 0.00 0.00 0.00 2.94
2889 3045 9.605275 AAGTAAATAACGTAGGAAAATAGGACC 57.395 33.333 0.00 0.00 0.00 4.46
2890 3046 7.922811 AGTAAATAACGTAGGAAAATAGGACCG 59.077 37.037 0.00 0.00 0.00 4.79
2891 3047 2.591571 ACGTAGGAAAATAGGACCGC 57.408 50.000 0.00 0.00 0.00 5.68
2892 3048 1.137675 ACGTAGGAAAATAGGACCGCC 59.862 52.381 0.00 0.00 0.00 6.13
2907 3063 5.978814 AGGACCGCCTATTCATCATATAAC 58.021 41.667 0.00 0.00 44.74 1.89
2908 3064 5.721960 AGGACCGCCTATTCATCATATAACT 59.278 40.000 0.00 0.00 44.74 2.24
2909 3065 6.895756 AGGACCGCCTATTCATCATATAACTA 59.104 38.462 0.00 0.00 44.74 2.24
2910 3066 6.979238 GGACCGCCTATTCATCATATAACTAC 59.021 42.308 0.00 0.00 0.00 2.73
2911 3067 7.363530 GGACCGCCTATTCATCATATAACTACA 60.364 40.741 0.00 0.00 0.00 2.74
2912 3068 7.548097 ACCGCCTATTCATCATATAACTACAG 58.452 38.462 0.00 0.00 0.00 2.74
2913 3069 7.396339 ACCGCCTATTCATCATATAACTACAGA 59.604 37.037 0.00 0.00 0.00 3.41
2914 3070 8.251026 CCGCCTATTCATCATATAACTACAGAA 58.749 37.037 0.00 0.00 0.00 3.02
2915 3071 9.295214 CGCCTATTCATCATATAACTACAGAAG 57.705 37.037 0.00 0.00 0.00 2.85
2930 3086 7.962964 ACTACAGAAGAAAAATCAACGATGA 57.037 32.000 0.00 0.00 40.57 2.92
2931 3087 7.797819 ACTACAGAAGAAAAATCAACGATGAC 58.202 34.615 0.00 0.00 38.69 3.06
2932 3088 6.867662 ACAGAAGAAAAATCAACGATGACT 57.132 33.333 0.00 0.00 38.69 3.41
2933 3089 7.264373 ACAGAAGAAAAATCAACGATGACTT 57.736 32.000 0.00 0.00 38.69 3.01
2934 3090 7.707104 ACAGAAGAAAAATCAACGATGACTTT 58.293 30.769 0.00 0.00 36.62 2.66
2935 3091 8.190784 ACAGAAGAAAAATCAACGATGACTTTT 58.809 29.630 13.58 13.58 44.92 2.27
2936 3092 9.023967 CAGAAGAAAAATCAACGATGACTTTTT 57.976 29.630 14.62 17.10 43.00 1.94
2937 3093 9.023967 AGAAGAAAAATCAACGATGACTTTTTG 57.976 29.630 21.35 3.53 43.00 2.44
2938 3094 7.698836 AGAAAAATCAACGATGACTTTTTGG 57.301 32.000 21.35 0.00 43.00 3.28
2939 3095 7.488322 AGAAAAATCAACGATGACTTTTTGGA 58.512 30.769 21.35 0.00 43.00 3.53
2940 3096 7.435192 AGAAAAATCAACGATGACTTTTTGGAC 59.565 33.333 21.35 10.05 43.00 4.02
2941 3097 6.391227 AAATCAACGATGACTTTTTGGACT 57.609 33.333 0.00 0.00 38.69 3.85
2942 3098 7.504924 AAATCAACGATGACTTTTTGGACTA 57.495 32.000 0.00 0.00 38.69 2.59
2943 3099 7.687941 AATCAACGATGACTTTTTGGACTAT 57.312 32.000 0.00 0.00 38.69 2.12
2944 3100 7.687941 ATCAACGATGACTTTTTGGACTATT 57.312 32.000 0.00 0.00 38.69 1.73
2945 3101 8.786826 ATCAACGATGACTTTTTGGACTATTA 57.213 30.769 0.00 0.00 38.69 0.98
2946 3102 8.251750 TCAACGATGACTTTTTGGACTATTAG 57.748 34.615 0.00 0.00 0.00 1.73
2947 3103 8.092068 TCAACGATGACTTTTTGGACTATTAGA 58.908 33.333 0.00 0.00 0.00 2.10
2948 3104 8.883731 CAACGATGACTTTTTGGACTATTAGAT 58.116 33.333 0.00 0.00 0.00 1.98
2949 3105 8.649973 ACGATGACTTTTTGGACTATTAGATC 57.350 34.615 0.00 0.00 0.00 2.75
2950 3106 8.258007 ACGATGACTTTTTGGACTATTAGATCA 58.742 33.333 0.00 0.00 0.00 2.92
2951 3107 8.543774 CGATGACTTTTTGGACTATTAGATCAC 58.456 37.037 0.00 0.00 0.00 3.06
2952 3108 8.738645 ATGACTTTTTGGACTATTAGATCACC 57.261 34.615 0.00 0.00 0.00 4.02
2953 3109 7.685481 TGACTTTTTGGACTATTAGATCACCA 58.315 34.615 0.00 0.00 0.00 4.17
2954 3110 8.328758 TGACTTTTTGGACTATTAGATCACCAT 58.671 33.333 0.00 0.00 0.00 3.55
2955 3111 8.738645 ACTTTTTGGACTATTAGATCACCATC 57.261 34.615 0.00 0.00 0.00 3.51
2956 3112 7.775561 ACTTTTTGGACTATTAGATCACCATCC 59.224 37.037 0.00 0.00 0.00 3.51
2957 3113 5.825593 TTGGACTATTAGATCACCATCCC 57.174 43.478 0.00 0.00 0.00 3.85
2958 3114 4.826616 TGGACTATTAGATCACCATCCCA 58.173 43.478 0.00 0.00 0.00 4.37
2959 3115 5.223655 TGGACTATTAGATCACCATCCCAA 58.776 41.667 0.00 0.00 0.00 4.12
2960 3116 5.071788 TGGACTATTAGATCACCATCCCAAC 59.928 44.000 0.00 0.00 0.00 3.77
2961 3117 5.215252 ACTATTAGATCACCATCCCAACG 57.785 43.478 0.00 0.00 0.00 4.10
2962 3118 3.492102 ATTAGATCACCATCCCAACGG 57.508 47.619 0.00 0.00 0.00 4.44
2963 3119 1.874129 TAGATCACCATCCCAACGGT 58.126 50.000 0.00 0.00 35.27 4.83
2964 3120 0.541863 AGATCACCATCCCAACGGTC 59.458 55.000 0.00 0.00 31.41 4.79
2965 3121 0.251916 GATCACCATCCCAACGGTCA 59.748 55.000 0.00 0.00 31.41 4.02
2966 3122 0.918983 ATCACCATCCCAACGGTCAT 59.081 50.000 0.00 0.00 31.41 3.06
2967 3123 0.035534 TCACCATCCCAACGGTCATG 60.036 55.000 0.00 0.00 31.41 3.07
2968 3124 0.035534 CACCATCCCAACGGTCATGA 60.036 55.000 0.00 0.00 31.41 3.07
2969 3125 0.918983 ACCATCCCAACGGTCATGAT 59.081 50.000 0.00 0.00 0.00 2.45
2970 3126 1.134098 ACCATCCCAACGGTCATGATC 60.134 52.381 0.00 0.00 0.00 2.92
2971 3127 1.597742 CATCCCAACGGTCATGATCC 58.402 55.000 0.00 1.25 0.00 3.36
2972 3128 0.474184 ATCCCAACGGTCATGATCCC 59.526 55.000 0.00 0.00 0.00 3.85
2977 3133 3.646554 CGGTCATGATCCCGCATG 58.353 61.111 11.37 0.00 45.41 4.06
2978 3134 2.610694 CGGTCATGATCCCGCATGC 61.611 63.158 7.91 7.91 44.08 4.06
2979 3135 1.526686 GGTCATGATCCCGCATGCA 60.527 57.895 19.57 0.00 44.08 3.96
2980 3136 1.650912 GTCATGATCCCGCATGCAC 59.349 57.895 19.57 0.41 44.08 4.57
2981 3137 1.526686 TCATGATCCCGCATGCACC 60.527 57.895 19.57 1.75 44.08 5.01
2982 3138 2.592574 ATGATCCCGCATGCACCG 60.593 61.111 19.57 3.77 0.00 4.94
2983 3139 3.405093 ATGATCCCGCATGCACCGT 62.405 57.895 19.57 0.00 0.00 4.83
2984 3140 2.824041 GATCCCGCATGCACCGTT 60.824 61.111 19.57 0.00 0.00 4.44
2985 3141 2.823829 GATCCCGCATGCACCGTTC 61.824 63.158 19.57 3.75 0.00 3.95
2986 3142 3.329542 ATCCCGCATGCACCGTTCT 62.330 57.895 19.57 0.00 0.00 3.01
2987 3143 2.819984 ATCCCGCATGCACCGTTCTT 62.820 55.000 19.57 0.00 0.00 2.52
2988 3144 2.480555 CCGCATGCACCGTTCTTC 59.519 61.111 19.57 0.00 0.00 2.87
2989 3145 2.034879 CCGCATGCACCGTTCTTCT 61.035 57.895 19.57 0.00 0.00 2.85
2990 3146 1.577328 CCGCATGCACCGTTCTTCTT 61.577 55.000 19.57 0.00 0.00 2.52
2991 3147 0.179215 CGCATGCACCGTTCTTCTTC 60.179 55.000 19.57 0.00 0.00 2.87
2992 3148 0.179215 GCATGCACCGTTCTTCTTCG 60.179 55.000 14.21 0.00 0.00 3.79
2993 3149 1.428448 CATGCACCGTTCTTCTTCGA 58.572 50.000 0.00 0.00 0.00 3.71
2994 3150 1.126846 CATGCACCGTTCTTCTTCGAC 59.873 52.381 0.00 0.00 0.00 4.20
2995 3151 0.937699 TGCACCGTTCTTCTTCGACG 60.938 55.000 0.00 0.00 36.61 5.12
2996 3152 0.938168 GCACCGTTCTTCTTCGACGT 60.938 55.000 0.00 0.00 35.17 4.34
2997 3153 1.664016 GCACCGTTCTTCTTCGACGTA 60.664 52.381 0.00 0.00 35.17 3.57
2998 3154 1.974680 CACCGTTCTTCTTCGACGTAC 59.025 52.381 0.00 0.00 35.17 3.67
2999 3155 1.876156 ACCGTTCTTCTTCGACGTACT 59.124 47.619 0.00 0.00 35.17 2.73
3000 3156 2.291741 ACCGTTCTTCTTCGACGTACTT 59.708 45.455 0.00 0.00 35.17 2.24
3001 3157 2.907392 CCGTTCTTCTTCGACGTACTTC 59.093 50.000 0.00 0.00 35.17 3.01
3002 3158 3.364764 CCGTTCTTCTTCGACGTACTTCT 60.365 47.826 0.00 0.00 35.17 2.85
3003 3159 3.839655 CGTTCTTCTTCGACGTACTTCTC 59.160 47.826 0.00 0.00 32.52 2.87
3004 3160 4.377226 CGTTCTTCTTCGACGTACTTCTCT 60.377 45.833 0.00 0.00 32.52 3.10
3005 3161 5.451039 GTTCTTCTTCGACGTACTTCTCTT 58.549 41.667 0.00 0.00 0.00 2.85
3006 3162 5.280328 TCTTCTTCGACGTACTTCTCTTC 57.720 43.478 0.00 0.00 0.00 2.87
3007 3163 4.996122 TCTTCTTCGACGTACTTCTCTTCT 59.004 41.667 0.00 0.00 0.00 2.85
3008 3164 5.469421 TCTTCTTCGACGTACTTCTCTTCTT 59.531 40.000 0.00 0.00 0.00 2.52
3009 3165 5.280328 TCTTCGACGTACTTCTCTTCTTC 57.720 43.478 0.00 0.00 0.00 2.87
3010 3166 4.753610 TCTTCGACGTACTTCTCTTCTTCA 59.246 41.667 0.00 0.00 0.00 3.02
3011 3167 5.411977 TCTTCGACGTACTTCTCTTCTTCAT 59.588 40.000 0.00 0.00 0.00 2.57
3012 3168 4.971008 TCGACGTACTTCTCTTCTTCATG 58.029 43.478 0.00 0.00 0.00 3.07
3013 3169 4.454847 TCGACGTACTTCTCTTCTTCATGT 59.545 41.667 0.00 0.00 0.00 3.21
3014 3170 4.555360 CGACGTACTTCTCTTCTTCATGTG 59.445 45.833 0.00 0.00 0.00 3.21
3015 3171 4.238514 ACGTACTTCTCTTCTTCATGTGC 58.761 43.478 0.00 0.00 0.00 4.57
3016 3172 4.237724 CGTACTTCTCTTCTTCATGTGCA 58.762 43.478 0.00 0.00 0.00 4.57
3017 3173 4.090642 CGTACTTCTCTTCTTCATGTGCAC 59.909 45.833 10.75 10.75 0.00 4.57
3018 3174 4.077300 ACTTCTCTTCTTCATGTGCACA 57.923 40.909 24.08 24.08 0.00 4.57
3019 3175 4.454678 ACTTCTCTTCTTCATGTGCACAA 58.545 39.130 25.72 5.14 0.00 3.33
3020 3176 5.068636 ACTTCTCTTCTTCATGTGCACAAT 58.931 37.500 25.72 9.80 0.00 2.71
3021 3177 5.180868 ACTTCTCTTCTTCATGTGCACAATC 59.819 40.000 25.72 0.00 0.00 2.67
3022 3178 4.903054 TCTCTTCTTCATGTGCACAATCT 58.097 39.130 25.72 4.24 0.00 2.40
3023 3179 6.041423 TCTCTTCTTCATGTGCACAATCTA 57.959 37.500 25.72 8.77 0.00 1.98
3024 3180 6.647229 TCTCTTCTTCATGTGCACAATCTAT 58.353 36.000 25.72 3.33 0.00 1.98
3025 3181 7.108194 TCTCTTCTTCATGTGCACAATCTATT 58.892 34.615 25.72 2.45 0.00 1.73
3026 3182 8.260114 TCTCTTCTTCATGTGCACAATCTATTA 58.740 33.333 25.72 6.16 0.00 0.98
3027 3183 8.201554 TCTTCTTCATGTGCACAATCTATTAC 57.798 34.615 25.72 0.00 0.00 1.89
3028 3184 8.043113 TCTTCTTCATGTGCACAATCTATTACT 58.957 33.333 25.72 0.00 0.00 2.24
3029 3185 7.776933 TCTTCATGTGCACAATCTATTACTC 57.223 36.000 25.72 0.00 0.00 2.59
3030 3186 6.763135 TCTTCATGTGCACAATCTATTACTCC 59.237 38.462 25.72 0.00 0.00 3.85
3031 3187 5.368145 TCATGTGCACAATCTATTACTCCC 58.632 41.667 25.72 0.00 0.00 4.30
3032 3188 5.130975 TCATGTGCACAATCTATTACTCCCT 59.869 40.000 25.72 0.00 0.00 4.20
3033 3189 5.435686 TGTGCACAATCTATTACTCCCTT 57.564 39.130 19.28 0.00 0.00 3.95
3034 3190 5.428253 TGTGCACAATCTATTACTCCCTTC 58.572 41.667 19.28 0.00 0.00 3.46
3035 3191 4.508124 GTGCACAATCTATTACTCCCTTCG 59.492 45.833 13.17 0.00 0.00 3.79
3036 3192 3.495001 GCACAATCTATTACTCCCTTCGC 59.505 47.826 0.00 0.00 0.00 4.70
3037 3193 4.058817 CACAATCTATTACTCCCTTCGCC 58.941 47.826 0.00 0.00 0.00 5.54
3038 3194 3.243771 ACAATCTATTACTCCCTTCGCCG 60.244 47.826 0.00 0.00 0.00 6.46
3039 3195 0.672342 TCTATTACTCCCTTCGCCGC 59.328 55.000 0.00 0.00 0.00 6.53
3040 3196 0.319641 CTATTACTCCCTTCGCCGCC 60.320 60.000 0.00 0.00 0.00 6.13
3041 3197 1.044231 TATTACTCCCTTCGCCGCCA 61.044 55.000 0.00 0.00 0.00 5.69
3042 3198 1.906105 ATTACTCCCTTCGCCGCCAA 61.906 55.000 0.00 0.00 0.00 4.52
3043 3199 2.791501 TTACTCCCTTCGCCGCCAAC 62.792 60.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
424 427 2.093783 GGTACCAAATGCTCTTTCGACG 59.906 50.000 7.15 0.00 0.00 5.12
647 650 1.004679 CCCTTTTGTGTGCCCATGC 60.005 57.895 0.00 0.00 38.26 4.06
728 731 7.041780 CCATCAACATCAGCCTTACATACTAAC 60.042 40.741 0.00 0.00 0.00 2.34
729 732 6.992123 CCATCAACATCAGCCTTACATACTAA 59.008 38.462 0.00 0.00 0.00 2.24
730 733 6.464322 CCCATCAACATCAGCCTTACATACTA 60.464 42.308 0.00 0.00 0.00 1.82
731 734 5.371526 CCATCAACATCAGCCTTACATACT 58.628 41.667 0.00 0.00 0.00 2.12
733 736 4.165950 ACCCATCAACATCAGCCTTACATA 59.834 41.667 0.00 0.00 0.00 2.29
737 740 3.737559 AACCCATCAACATCAGCCTTA 57.262 42.857 0.00 0.00 0.00 2.69
738 741 2.610438 AACCCATCAACATCAGCCTT 57.390 45.000 0.00 0.00 0.00 4.35
739 742 2.610438 AAACCCATCAACATCAGCCT 57.390 45.000 0.00 0.00 0.00 4.58
740 743 5.343307 AATAAAACCCATCAACATCAGCC 57.657 39.130 0.00 0.00 0.00 4.85
741 744 7.492344 CCTAAAATAAAACCCATCAACATCAGC 59.508 37.037 0.00 0.00 0.00 4.26
742 745 8.531146 ACCTAAAATAAAACCCATCAACATCAG 58.469 33.333 0.00 0.00 0.00 2.90
743 746 8.429237 ACCTAAAATAAAACCCATCAACATCA 57.571 30.769 0.00 0.00 0.00 3.07
744 747 9.366216 GAACCTAAAATAAAACCCATCAACATC 57.634 33.333 0.00 0.00 0.00 3.06
746 749 7.290248 TGGAACCTAAAATAAAACCCATCAACA 59.710 33.333 0.00 0.00 0.00 3.33
747 750 7.672240 TGGAACCTAAAATAAAACCCATCAAC 58.328 34.615 0.00 0.00 0.00 3.18
748 751 7.857404 TGGAACCTAAAATAAAACCCATCAA 57.143 32.000 0.00 0.00 0.00 2.57
749 752 8.442660 AATGGAACCTAAAATAAAACCCATCA 57.557 30.769 0.00 0.00 32.08 3.07
754 757 8.803235 AGACTGAATGGAACCTAAAATAAAACC 58.197 33.333 0.00 0.00 0.00 3.27
755 758 9.626045 CAGACTGAATGGAACCTAAAATAAAAC 57.374 33.333 0.00 0.00 0.00 2.43
758 761 8.934023 AACAGACTGAATGGAACCTAAAATAA 57.066 30.769 10.08 0.00 0.00 1.40
760 763 7.505585 TCAAACAGACTGAATGGAACCTAAAAT 59.494 33.333 10.08 0.00 0.00 1.82
762 765 6.361433 TCAAACAGACTGAATGGAACCTAAA 58.639 36.000 10.08 0.00 0.00 1.85
763 766 5.935945 TCAAACAGACTGAATGGAACCTAA 58.064 37.500 10.08 0.00 0.00 2.69
1620 1731 2.423185 TGTTGTTGGCAAAGTGTCAGAG 59.577 45.455 0.00 0.00 31.48 3.35
1947 2060 3.252215 CACGCAAACCTTCATTGTCCTTA 59.748 43.478 0.00 0.00 0.00 2.69
2162 2312 5.476945 TCAAAAGATCTACTTCCCAAAAGCC 59.523 40.000 0.00 0.00 37.93 4.35
2598 2754 0.393944 GCCTTAGGTTAGGTGTGGCC 60.394 60.000 0.00 0.00 37.63 5.36
2731 2887 0.875059 GGAAAAGGGCGTCACAAGAG 59.125 55.000 0.00 0.00 0.00 2.85
2732 2888 0.181587 TGGAAAAGGGCGTCACAAGA 59.818 50.000 0.00 0.00 0.00 3.02
2733 2889 1.028905 TTGGAAAAGGGCGTCACAAG 58.971 50.000 0.00 0.00 0.00 3.16
2735 2891 1.475403 TTTTGGAAAAGGGCGTCACA 58.525 45.000 0.00 0.00 0.00 3.58
2736 2892 2.588027 TTTTTGGAAAAGGGCGTCAC 57.412 45.000 0.00 0.00 0.00 3.67
2755 2911 2.788786 CGACGCATGACAAAAGCTTTTT 59.211 40.909 21.70 13.03 0.00 1.94
2756 2912 2.032799 TCGACGCATGACAAAAGCTTTT 59.967 40.909 18.74 18.74 0.00 2.27
2757 2913 1.601903 TCGACGCATGACAAAAGCTTT 59.398 42.857 5.69 5.69 0.00 3.51
2758 2914 1.225855 TCGACGCATGACAAAAGCTT 58.774 45.000 0.00 0.00 0.00 3.74
2759 2915 1.442769 ATCGACGCATGACAAAAGCT 58.557 45.000 0.00 0.00 0.00 3.74
2760 2916 2.247311 AATCGACGCATGACAAAAGC 57.753 45.000 0.00 0.00 0.00 3.51
2761 2917 4.562789 TCTCTAATCGACGCATGACAAAAG 59.437 41.667 0.00 0.00 0.00 2.27
2762 2918 4.490743 TCTCTAATCGACGCATGACAAAA 58.509 39.130 0.00 0.00 0.00 2.44
2763 2919 4.104696 TCTCTAATCGACGCATGACAAA 57.895 40.909 0.00 0.00 0.00 2.83
2764 2920 3.775661 TCTCTAATCGACGCATGACAA 57.224 42.857 0.00 0.00 0.00 3.18
2765 2921 3.066760 ACATCTCTAATCGACGCATGACA 59.933 43.478 0.00 0.00 0.00 3.58
2766 2922 3.633235 ACATCTCTAATCGACGCATGAC 58.367 45.455 0.00 0.00 0.00 3.06
2767 2923 3.990318 ACATCTCTAATCGACGCATGA 57.010 42.857 0.00 0.00 0.00 3.07
2768 2924 3.426859 GGAACATCTCTAATCGACGCATG 59.573 47.826 0.00 0.00 0.00 4.06
2769 2925 3.319405 AGGAACATCTCTAATCGACGCAT 59.681 43.478 0.00 0.00 0.00 4.73
2770 2926 2.688446 AGGAACATCTCTAATCGACGCA 59.312 45.455 0.00 0.00 0.00 5.24
2771 2927 3.357166 AGGAACATCTCTAATCGACGC 57.643 47.619 0.00 0.00 0.00 5.19
2772 2928 4.023963 TGCTAGGAACATCTCTAATCGACG 60.024 45.833 0.00 0.00 0.00 5.12
2773 2929 5.440234 TGCTAGGAACATCTCTAATCGAC 57.560 43.478 0.00 0.00 0.00 4.20
2774 2930 6.715264 TGTATGCTAGGAACATCTCTAATCGA 59.285 38.462 0.00 0.00 0.00 3.59
2775 2931 6.914259 TGTATGCTAGGAACATCTCTAATCG 58.086 40.000 0.00 0.00 0.00 3.34
2776 2932 9.202273 CTTTGTATGCTAGGAACATCTCTAATC 57.798 37.037 0.00 0.00 0.00 1.75
2777 2933 8.153550 CCTTTGTATGCTAGGAACATCTCTAAT 58.846 37.037 0.00 0.00 0.00 1.73
2778 2934 7.500992 CCTTTGTATGCTAGGAACATCTCTAA 58.499 38.462 0.00 0.00 0.00 2.10
2779 2935 6.463049 GCCTTTGTATGCTAGGAACATCTCTA 60.463 42.308 6.70 0.00 0.00 2.43
2780 2936 5.686124 GCCTTTGTATGCTAGGAACATCTCT 60.686 44.000 6.70 0.00 0.00 3.10
2781 2937 4.513318 GCCTTTGTATGCTAGGAACATCTC 59.487 45.833 6.70 0.00 0.00 2.75
2782 2938 4.080356 TGCCTTTGTATGCTAGGAACATCT 60.080 41.667 6.70 0.00 0.00 2.90
2783 2939 4.199310 TGCCTTTGTATGCTAGGAACATC 58.801 43.478 6.70 0.00 0.00 3.06
2784 2940 4.202441 CTGCCTTTGTATGCTAGGAACAT 58.798 43.478 6.70 0.00 0.00 2.71
2785 2941 3.609853 CTGCCTTTGTATGCTAGGAACA 58.390 45.455 6.70 0.00 0.00 3.18
2786 2942 2.356069 GCTGCCTTTGTATGCTAGGAAC 59.644 50.000 6.70 0.00 0.00 3.62
2787 2943 2.643551 GCTGCCTTTGTATGCTAGGAA 58.356 47.619 6.70 0.00 0.00 3.36
2788 2944 1.473257 CGCTGCCTTTGTATGCTAGGA 60.473 52.381 6.70 0.00 0.00 2.94
2789 2945 0.940126 CGCTGCCTTTGTATGCTAGG 59.060 55.000 0.00 0.00 0.00 3.02
2790 2946 0.940126 CCGCTGCCTTTGTATGCTAG 59.060 55.000 0.00 0.00 0.00 3.42
2791 2947 0.539518 TCCGCTGCCTTTGTATGCTA 59.460 50.000 0.00 0.00 0.00 3.49
2792 2948 0.322456 TTCCGCTGCCTTTGTATGCT 60.322 50.000 0.00 0.00 0.00 3.79
2793 2949 0.740737 ATTCCGCTGCCTTTGTATGC 59.259 50.000 0.00 0.00 0.00 3.14
2794 2950 1.534595 GCATTCCGCTGCCTTTGTATG 60.535 52.381 0.00 0.00 36.10 2.39
2795 2951 0.740737 GCATTCCGCTGCCTTTGTAT 59.259 50.000 0.00 0.00 36.10 2.29
2796 2952 0.607762 TGCATTCCGCTGCCTTTGTA 60.608 50.000 0.00 0.00 41.58 2.41
2797 2953 1.870055 CTGCATTCCGCTGCCTTTGT 61.870 55.000 0.00 0.00 41.58 2.83
2798 2954 1.153901 CTGCATTCCGCTGCCTTTG 60.154 57.895 0.00 0.00 41.58 2.77
2799 2955 2.345760 CCTGCATTCCGCTGCCTTT 61.346 57.895 0.00 0.00 41.58 3.11
2800 2956 2.753043 CCTGCATTCCGCTGCCTT 60.753 61.111 0.00 0.00 41.58 4.35
2801 2957 2.769652 TTTCCTGCATTCCGCTGCCT 62.770 55.000 0.00 0.00 41.58 4.75
2802 2958 1.876497 TTTTCCTGCATTCCGCTGCC 61.876 55.000 0.00 0.00 41.58 4.85
2803 2959 0.174162 ATTTTCCTGCATTCCGCTGC 59.826 50.000 0.00 0.00 43.06 5.25
2804 2960 1.917273 CATTTTCCTGCATTCCGCTG 58.083 50.000 0.00 0.00 43.06 5.18
2805 2961 0.174162 GCATTTTCCTGCATTCCGCT 59.826 50.000 0.00 0.00 41.87 5.52
2806 2962 0.108709 TGCATTTTCCTGCATTCCGC 60.109 50.000 0.00 0.00 46.76 5.54
2813 2969 5.989551 TTTTCTCTTTTGCATTTTCCTGC 57.010 34.783 0.00 0.00 42.62 4.85
2814 2970 9.480053 TCTTATTTTCTCTTTTGCATTTTCCTG 57.520 29.630 0.00 0.00 0.00 3.86
2818 2974 9.440773 GGGATCTTATTTTCTCTTTTGCATTTT 57.559 29.630 0.00 0.00 0.00 1.82
2819 2975 8.596293 TGGGATCTTATTTTCTCTTTTGCATTT 58.404 29.630 0.00 0.00 0.00 2.32
2820 2976 8.137745 TGGGATCTTATTTTCTCTTTTGCATT 57.862 30.769 0.00 0.00 0.00 3.56
2821 2977 7.722949 TGGGATCTTATTTTCTCTTTTGCAT 57.277 32.000 0.00 0.00 0.00 3.96
2822 2978 7.451255 TCTTGGGATCTTATTTTCTCTTTTGCA 59.549 33.333 0.00 0.00 0.00 4.08
2823 2979 7.757173 GTCTTGGGATCTTATTTTCTCTTTTGC 59.243 37.037 0.00 0.00 0.00 3.68
2824 2980 9.018582 AGTCTTGGGATCTTATTTTCTCTTTTG 57.981 33.333 0.00 0.00 0.00 2.44
2825 2981 9.237187 GAGTCTTGGGATCTTATTTTCTCTTTT 57.763 33.333 0.00 0.00 0.00 2.27
2826 2982 7.831690 GGAGTCTTGGGATCTTATTTTCTCTTT 59.168 37.037 0.00 0.00 0.00 2.52
2827 2983 7.037297 TGGAGTCTTGGGATCTTATTTTCTCTT 60.037 37.037 0.00 0.00 0.00 2.85
2828 2984 6.445139 TGGAGTCTTGGGATCTTATTTTCTCT 59.555 38.462 0.00 0.00 0.00 3.10
2829 2985 6.653989 TGGAGTCTTGGGATCTTATTTTCTC 58.346 40.000 0.00 0.00 0.00 2.87
2830 2986 6.642733 TGGAGTCTTGGGATCTTATTTTCT 57.357 37.500 0.00 0.00 0.00 2.52
2831 2987 7.394641 ACTTTGGAGTCTTGGGATCTTATTTTC 59.605 37.037 0.00 0.00 0.00 2.29
2832 2988 7.177392 CACTTTGGAGTCTTGGGATCTTATTTT 59.823 37.037 0.00 0.00 32.54 1.82
2833 2989 6.660949 CACTTTGGAGTCTTGGGATCTTATTT 59.339 38.462 0.00 0.00 32.54 1.40
2834 2990 6.183347 CACTTTGGAGTCTTGGGATCTTATT 58.817 40.000 0.00 0.00 32.54 1.40
2835 2991 5.749462 CACTTTGGAGTCTTGGGATCTTAT 58.251 41.667 0.00 0.00 32.54 1.73
2836 2992 4.565652 GCACTTTGGAGTCTTGGGATCTTA 60.566 45.833 0.00 0.00 32.54 2.10
2837 2993 3.812167 GCACTTTGGAGTCTTGGGATCTT 60.812 47.826 0.00 0.00 32.54 2.40
2838 2994 2.290577 GCACTTTGGAGTCTTGGGATCT 60.291 50.000 0.00 0.00 32.54 2.75
2839 2995 2.087646 GCACTTTGGAGTCTTGGGATC 58.912 52.381 0.00 0.00 32.54 3.36
2840 2996 1.425066 TGCACTTTGGAGTCTTGGGAT 59.575 47.619 0.00 0.00 32.54 3.85
2841 2997 0.843309 TGCACTTTGGAGTCTTGGGA 59.157 50.000 0.00 0.00 32.54 4.37
2842 2998 0.954452 GTGCACTTTGGAGTCTTGGG 59.046 55.000 10.32 0.00 32.54 4.12
2843 2999 0.588252 CGTGCACTTTGGAGTCTTGG 59.412 55.000 16.19 0.00 32.54 3.61
2844 3000 1.581934 TCGTGCACTTTGGAGTCTTG 58.418 50.000 16.19 0.00 32.54 3.02
2845 3001 2.213499 CTTCGTGCACTTTGGAGTCTT 58.787 47.619 16.19 0.00 32.54 3.01
2846 3002 1.139058 ACTTCGTGCACTTTGGAGTCT 59.861 47.619 16.19 0.00 32.54 3.24
2847 3003 1.583054 ACTTCGTGCACTTTGGAGTC 58.417 50.000 16.19 0.00 32.54 3.36
2848 3004 2.902705 TACTTCGTGCACTTTGGAGT 57.097 45.000 16.19 12.00 36.25 3.85
2849 3005 4.749245 ATTTACTTCGTGCACTTTGGAG 57.251 40.909 16.19 6.12 0.00 3.86
2850 3006 5.333492 CGTTATTTACTTCGTGCACTTTGGA 60.333 40.000 16.19 1.15 0.00 3.53
2851 3007 4.843984 CGTTATTTACTTCGTGCACTTTGG 59.156 41.667 16.19 4.95 0.00 3.28
2852 3008 5.437263 ACGTTATTTACTTCGTGCACTTTG 58.563 37.500 16.19 6.78 35.24 2.77
2853 3009 5.662211 ACGTTATTTACTTCGTGCACTTT 57.338 34.783 16.19 0.00 35.24 2.66
2854 3010 5.346822 CCTACGTTATTTACTTCGTGCACTT 59.653 40.000 16.19 0.00 37.66 3.16
2855 3011 4.860907 CCTACGTTATTTACTTCGTGCACT 59.139 41.667 16.19 0.00 37.66 4.40
2856 3012 4.858692 TCCTACGTTATTTACTTCGTGCAC 59.141 41.667 6.82 6.82 37.66 4.57
2857 3013 5.058149 TCCTACGTTATTTACTTCGTGCA 57.942 39.130 0.00 0.00 37.66 4.57
2858 3014 6.393720 TTTCCTACGTTATTTACTTCGTGC 57.606 37.500 0.00 0.00 37.66 5.34
2860 3016 9.305925 CCTATTTTCCTACGTTATTTACTTCGT 57.694 33.333 0.00 0.00 39.74 3.85
2861 3017 9.520204 TCCTATTTTCCTACGTTATTTACTTCG 57.480 33.333 0.00 0.00 0.00 3.79
2863 3019 9.605275 GGTCCTATTTTCCTACGTTATTTACTT 57.395 33.333 0.00 0.00 0.00 2.24
2864 3020 7.922811 CGGTCCTATTTTCCTACGTTATTTACT 59.077 37.037 0.00 0.00 0.00 2.24
2865 3021 7.306807 GCGGTCCTATTTTCCTACGTTATTTAC 60.307 40.741 0.00 0.00 0.00 2.01
2866 3022 6.701400 GCGGTCCTATTTTCCTACGTTATTTA 59.299 38.462 0.00 0.00 0.00 1.40
2867 3023 5.525012 GCGGTCCTATTTTCCTACGTTATTT 59.475 40.000 0.00 0.00 0.00 1.40
2868 3024 5.052481 GCGGTCCTATTTTCCTACGTTATT 58.948 41.667 0.00 0.00 0.00 1.40
2869 3025 4.502087 GGCGGTCCTATTTTCCTACGTTAT 60.502 45.833 0.00 0.00 0.00 1.89
2870 3026 3.181476 GGCGGTCCTATTTTCCTACGTTA 60.181 47.826 0.00 0.00 0.00 3.18
2871 3027 2.419159 GGCGGTCCTATTTTCCTACGTT 60.419 50.000 0.00 0.00 0.00 3.99
2872 3028 1.137675 GGCGGTCCTATTTTCCTACGT 59.862 52.381 0.00 0.00 0.00 3.57
2873 3029 1.411612 AGGCGGTCCTATTTTCCTACG 59.588 52.381 0.00 0.00 42.06 3.51
2884 3040 5.721960 AGTTATATGATGAATAGGCGGTCCT 59.278 40.000 0.00 0.00 46.57 3.85
2885 3041 5.978814 AGTTATATGATGAATAGGCGGTCC 58.021 41.667 0.00 0.00 0.00 4.46
2886 3042 7.544622 TGTAGTTATATGATGAATAGGCGGTC 58.455 38.462 0.00 0.00 0.00 4.79
2887 3043 7.396339 TCTGTAGTTATATGATGAATAGGCGGT 59.604 37.037 0.00 0.00 0.00 5.68
2888 3044 7.772166 TCTGTAGTTATATGATGAATAGGCGG 58.228 38.462 0.00 0.00 0.00 6.13
2889 3045 9.295214 CTTCTGTAGTTATATGATGAATAGGCG 57.705 37.037 0.00 0.00 0.00 5.52
2904 3060 9.483916 TCATCGTTGATTTTTCTTCTGTAGTTA 57.516 29.630 0.00 0.00 0.00 2.24
2905 3061 8.283291 GTCATCGTTGATTTTTCTTCTGTAGTT 58.717 33.333 0.00 0.00 33.56 2.24
2906 3062 7.657761 AGTCATCGTTGATTTTTCTTCTGTAGT 59.342 33.333 0.00 0.00 33.56 2.73
2907 3063 8.023050 AGTCATCGTTGATTTTTCTTCTGTAG 57.977 34.615 0.00 0.00 33.56 2.74
2908 3064 7.962964 AGTCATCGTTGATTTTTCTTCTGTA 57.037 32.000 0.00 0.00 33.56 2.74
2909 3065 6.867662 AGTCATCGTTGATTTTTCTTCTGT 57.132 33.333 0.00 0.00 33.56 3.41
2910 3066 8.566008 AAAAGTCATCGTTGATTTTTCTTCTG 57.434 30.769 18.55 0.00 43.99 3.02
2911 3067 9.023967 CAAAAAGTCATCGTTGATTTTTCTTCT 57.976 29.630 22.25 10.11 45.54 2.85
2912 3068 8.268738 CCAAAAAGTCATCGTTGATTTTTCTTC 58.731 33.333 22.25 0.73 45.54 2.87
2913 3069 7.978975 TCCAAAAAGTCATCGTTGATTTTTCTT 59.021 29.630 22.25 10.90 45.54 2.52
2914 3070 7.435192 GTCCAAAAAGTCATCGTTGATTTTTCT 59.565 33.333 22.25 13.68 45.54 2.52
2915 3071 7.435192 AGTCCAAAAAGTCATCGTTGATTTTTC 59.565 33.333 22.25 13.78 45.54 2.29
2917 3073 6.805713 AGTCCAAAAAGTCATCGTTGATTTT 58.194 32.000 10.23 10.23 41.83 1.82
2918 3074 6.391227 AGTCCAAAAAGTCATCGTTGATTT 57.609 33.333 0.00 0.00 33.63 2.17
2919 3075 7.687941 ATAGTCCAAAAAGTCATCGTTGATT 57.312 32.000 0.00 0.00 33.56 2.57
2920 3076 7.687941 AATAGTCCAAAAAGTCATCGTTGAT 57.312 32.000 0.00 0.00 33.56 2.57
2921 3077 8.092068 TCTAATAGTCCAAAAAGTCATCGTTGA 58.908 33.333 0.00 0.00 0.00 3.18
2922 3078 8.251750 TCTAATAGTCCAAAAAGTCATCGTTG 57.748 34.615 0.00 0.00 0.00 4.10
2923 3079 9.099454 GATCTAATAGTCCAAAAAGTCATCGTT 57.901 33.333 0.00 0.00 0.00 3.85
2924 3080 8.258007 TGATCTAATAGTCCAAAAAGTCATCGT 58.742 33.333 0.00 0.00 0.00 3.73
2925 3081 8.543774 GTGATCTAATAGTCCAAAAAGTCATCG 58.456 37.037 0.00 0.00 0.00 3.84
2926 3082 8.831550 GGTGATCTAATAGTCCAAAAAGTCATC 58.168 37.037 0.00 0.00 0.00 2.92
2927 3083 8.328758 TGGTGATCTAATAGTCCAAAAAGTCAT 58.671 33.333 0.00 0.00 0.00 3.06
2928 3084 7.685481 TGGTGATCTAATAGTCCAAAAAGTCA 58.315 34.615 0.00 0.00 0.00 3.41
2929 3085 8.738645 ATGGTGATCTAATAGTCCAAAAAGTC 57.261 34.615 0.00 0.00 0.00 3.01
2930 3086 7.775561 GGATGGTGATCTAATAGTCCAAAAAGT 59.224 37.037 0.00 0.00 0.00 2.66
2931 3087 7.229506 GGGATGGTGATCTAATAGTCCAAAAAG 59.770 40.741 0.00 0.00 0.00 2.27
2932 3088 7.060421 GGGATGGTGATCTAATAGTCCAAAAA 58.940 38.462 0.00 0.00 0.00 1.94
2933 3089 6.159575 TGGGATGGTGATCTAATAGTCCAAAA 59.840 38.462 0.00 0.00 0.00 2.44
2934 3090 5.669904 TGGGATGGTGATCTAATAGTCCAAA 59.330 40.000 0.00 0.00 0.00 3.28
2935 3091 5.223655 TGGGATGGTGATCTAATAGTCCAA 58.776 41.667 0.00 0.00 0.00 3.53
2936 3092 4.826616 TGGGATGGTGATCTAATAGTCCA 58.173 43.478 0.00 0.00 0.00 4.02
2937 3093 5.552178 GTTGGGATGGTGATCTAATAGTCC 58.448 45.833 0.00 0.00 0.00 3.85
2938 3094 5.230942 CGTTGGGATGGTGATCTAATAGTC 58.769 45.833 0.00 0.00 0.00 2.59
2939 3095 4.040461 CCGTTGGGATGGTGATCTAATAGT 59.960 45.833 0.00 0.00 34.06 2.12
2940 3096 4.040461 ACCGTTGGGATGGTGATCTAATAG 59.960 45.833 0.00 0.00 43.63 1.73
2941 3097 3.971305 ACCGTTGGGATGGTGATCTAATA 59.029 43.478 0.00 0.00 43.63 0.98
2942 3098 2.777692 ACCGTTGGGATGGTGATCTAAT 59.222 45.455 0.00 0.00 43.63 1.73
2943 3099 2.169769 GACCGTTGGGATGGTGATCTAA 59.830 50.000 0.00 0.00 45.29 2.10
2944 3100 1.760613 GACCGTTGGGATGGTGATCTA 59.239 52.381 0.00 0.00 45.29 1.98
2945 3101 0.541863 GACCGTTGGGATGGTGATCT 59.458 55.000 0.00 0.00 45.29 2.75
2946 3102 0.251916 TGACCGTTGGGATGGTGATC 59.748 55.000 0.00 0.00 45.29 2.92
2947 3103 0.918983 ATGACCGTTGGGATGGTGAT 59.081 50.000 0.00 0.00 45.29 3.06
2948 3104 0.035534 CATGACCGTTGGGATGGTGA 60.036 55.000 0.00 0.00 45.29 4.02
2949 3105 0.035534 TCATGACCGTTGGGATGGTG 60.036 55.000 0.00 0.00 45.29 4.17
2951 3107 1.597742 GATCATGACCGTTGGGATGG 58.402 55.000 0.00 0.00 37.98 3.51
2952 3108 1.597742 GGATCATGACCGTTGGGATG 58.402 55.000 0.00 0.00 36.97 3.51
2953 3109 0.474184 GGGATCATGACCGTTGGGAT 59.526 55.000 0.00 0.00 36.97 3.85
2954 3110 1.912220 GGGATCATGACCGTTGGGA 59.088 57.895 0.00 0.00 36.97 4.37
2955 3111 1.523711 CGGGATCATGACCGTTGGG 60.524 63.158 14.89 0.00 44.85 4.12
2956 3112 4.124910 CGGGATCATGACCGTTGG 57.875 61.111 14.89 0.00 44.85 3.77
2961 3117 1.526686 TGCATGCGGGATCATGACC 60.527 57.895 14.09 1.30 44.94 4.02
2962 3118 1.650912 GTGCATGCGGGATCATGAC 59.349 57.895 14.09 0.00 44.94 3.06
2963 3119 1.526686 GGTGCATGCGGGATCATGA 60.527 57.895 14.09 0.00 44.94 3.07
2964 3120 2.900167 CGGTGCATGCGGGATCATG 61.900 63.158 14.09 0.00 44.93 3.07
2965 3121 2.592574 CGGTGCATGCGGGATCAT 60.593 61.111 14.09 0.00 0.00 2.45
2966 3122 3.620419 AACGGTGCATGCGGGATCA 62.620 57.895 14.09 0.00 0.00 2.92
2967 3123 2.823829 GAACGGTGCATGCGGGATC 61.824 63.158 14.09 5.16 0.00 3.36
2968 3124 2.819984 AAGAACGGTGCATGCGGGAT 62.820 55.000 14.09 0.00 0.00 3.85
2969 3125 3.545124 AAGAACGGTGCATGCGGGA 62.545 57.895 14.09 0.00 0.00 5.14
2970 3126 3.039202 GAAGAACGGTGCATGCGGG 62.039 63.158 14.09 7.06 0.00 6.13
2971 3127 1.577328 AAGAAGAACGGTGCATGCGG 61.577 55.000 14.09 7.44 0.00 5.69
2972 3128 0.179215 GAAGAAGAACGGTGCATGCG 60.179 55.000 14.09 0.76 0.00 4.73
2973 3129 0.179215 CGAAGAAGAACGGTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
2974 3130 1.126846 GTCGAAGAAGAACGGTGCATG 59.873 52.381 0.00 0.00 39.69 4.06
2975 3131 1.429463 GTCGAAGAAGAACGGTGCAT 58.571 50.000 0.00 0.00 39.69 3.96
2976 3132 0.937699 CGTCGAAGAAGAACGGTGCA 60.938 55.000 0.00 0.00 38.59 4.57
2977 3133 0.938168 ACGTCGAAGAAGAACGGTGC 60.938 55.000 5.05 0.00 38.59 5.01
2978 3134 1.974680 GTACGTCGAAGAAGAACGGTG 59.025 52.381 5.05 0.00 38.59 4.94
2979 3135 1.876156 AGTACGTCGAAGAAGAACGGT 59.124 47.619 5.05 0.00 38.59 4.83
2980 3136 2.608467 AGTACGTCGAAGAAGAACGG 57.392 50.000 5.05 0.00 38.59 4.44
2981 3137 3.808095 AGAAGTACGTCGAAGAAGAACG 58.192 45.455 5.05 0.00 38.59 3.95
2982 3138 5.033326 AGAGAAGTACGTCGAAGAAGAAC 57.967 43.478 5.05 0.00 38.59 3.01
2983 3139 5.469421 AGAAGAGAAGTACGTCGAAGAAGAA 59.531 40.000 5.05 0.00 38.59 2.52
2984 3140 4.996122 AGAAGAGAAGTACGTCGAAGAAGA 59.004 41.667 5.05 0.00 38.59 2.87
2985 3141 5.285798 AGAAGAGAAGTACGTCGAAGAAG 57.714 43.478 5.05 0.00 39.69 2.85
2986 3142 5.237996 TGAAGAAGAGAAGTACGTCGAAGAA 59.762 40.000 5.05 0.00 39.69 2.52
2987 3143 4.753610 TGAAGAAGAGAAGTACGTCGAAGA 59.246 41.667 5.05 0.00 0.00 2.87
2988 3144 5.032100 TGAAGAAGAGAAGTACGTCGAAG 57.968 43.478 0.00 0.00 0.00 3.79
2989 3145 5.048921 ACATGAAGAAGAGAAGTACGTCGAA 60.049 40.000 0.00 0.00 0.00 3.71
2990 3146 4.454847 ACATGAAGAAGAGAAGTACGTCGA 59.545 41.667 0.00 0.00 0.00 4.20
2991 3147 4.555360 CACATGAAGAAGAGAAGTACGTCG 59.445 45.833 0.00 0.00 0.00 5.12
2992 3148 4.324936 GCACATGAAGAAGAGAAGTACGTC 59.675 45.833 0.00 0.00 0.00 4.34
2993 3149 4.238514 GCACATGAAGAAGAGAAGTACGT 58.761 43.478 0.00 0.00 0.00 3.57
2994 3150 4.090642 GTGCACATGAAGAAGAGAAGTACG 59.909 45.833 13.17 0.00 0.00 3.67
2995 3151 4.991056 TGTGCACATGAAGAAGAGAAGTAC 59.009 41.667 17.42 0.00 0.00 2.73
2996 3152 5.213891 TGTGCACATGAAGAAGAGAAGTA 57.786 39.130 17.42 0.00 0.00 2.24
2997 3153 4.077300 TGTGCACATGAAGAAGAGAAGT 57.923 40.909 17.42 0.00 0.00 3.01
2998 3154 5.411977 AGATTGTGCACATGAAGAAGAGAAG 59.588 40.000 22.39 0.00 0.00 2.85
2999 3155 5.311265 AGATTGTGCACATGAAGAAGAGAA 58.689 37.500 22.39 0.40 0.00 2.87
3000 3156 4.903054 AGATTGTGCACATGAAGAAGAGA 58.097 39.130 22.39 1.00 0.00 3.10
3001 3157 6.922247 ATAGATTGTGCACATGAAGAAGAG 57.078 37.500 22.39 0.00 0.00 2.85
3002 3158 8.043113 AGTAATAGATTGTGCACATGAAGAAGA 58.957 33.333 22.39 2.72 0.00 2.87
3003 3159 8.206325 AGTAATAGATTGTGCACATGAAGAAG 57.794 34.615 22.39 0.00 0.00 2.85
3004 3160 7.280876 GGAGTAATAGATTGTGCACATGAAGAA 59.719 37.037 22.39 4.46 0.00 2.52
3005 3161 6.763135 GGAGTAATAGATTGTGCACATGAAGA 59.237 38.462 22.39 5.32 0.00 2.87
3006 3162 6.017605 GGGAGTAATAGATTGTGCACATGAAG 60.018 42.308 22.39 0.00 0.00 3.02
3007 3163 5.822519 GGGAGTAATAGATTGTGCACATGAA 59.177 40.000 22.39 6.21 0.00 2.57
3008 3164 5.130975 AGGGAGTAATAGATTGTGCACATGA 59.869 40.000 22.39 7.09 0.00 3.07
3009 3165 5.371526 AGGGAGTAATAGATTGTGCACATG 58.628 41.667 22.39 0.00 0.00 3.21
3010 3166 5.636903 AGGGAGTAATAGATTGTGCACAT 57.363 39.130 22.39 10.95 0.00 3.21
3011 3167 5.428253 GAAGGGAGTAATAGATTGTGCACA 58.572 41.667 17.42 17.42 0.00 4.57
3012 3168 4.508124 CGAAGGGAGTAATAGATTGTGCAC 59.492 45.833 10.75 10.75 0.00 4.57
3013 3169 4.693283 CGAAGGGAGTAATAGATTGTGCA 58.307 43.478 0.00 0.00 0.00 4.57
3014 3170 3.495001 GCGAAGGGAGTAATAGATTGTGC 59.505 47.826 0.00 0.00 0.00 4.57
3015 3171 4.058817 GGCGAAGGGAGTAATAGATTGTG 58.941 47.826 0.00 0.00 0.00 3.33
3016 3172 3.243771 CGGCGAAGGGAGTAATAGATTGT 60.244 47.826 0.00 0.00 0.00 2.71
3017 3173 3.318017 CGGCGAAGGGAGTAATAGATTG 58.682 50.000 0.00 0.00 0.00 2.67
3018 3174 2.288886 GCGGCGAAGGGAGTAATAGATT 60.289 50.000 12.98 0.00 0.00 2.40
3019 3175 1.272769 GCGGCGAAGGGAGTAATAGAT 59.727 52.381 12.98 0.00 0.00 1.98
3020 3176 0.672342 GCGGCGAAGGGAGTAATAGA 59.328 55.000 12.98 0.00 0.00 1.98
3021 3177 0.319641 GGCGGCGAAGGGAGTAATAG 60.320 60.000 12.98 0.00 0.00 1.73
3022 3178 1.044231 TGGCGGCGAAGGGAGTAATA 61.044 55.000 12.98 0.00 0.00 0.98
3023 3179 1.906105 TTGGCGGCGAAGGGAGTAAT 61.906 55.000 12.98 0.00 0.00 1.89
3024 3180 2.585341 TTGGCGGCGAAGGGAGTAA 61.585 57.895 12.98 0.00 0.00 2.24
3025 3181 2.998480 TTGGCGGCGAAGGGAGTA 60.998 61.111 12.98 0.00 0.00 2.59
3026 3182 4.699522 GTTGGCGGCGAAGGGAGT 62.700 66.667 12.98 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.