Multiple sequence alignment - TraesCS7A01G524000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G524000 chr7A 100.000 2312 0 0 1 2312 706404149 706401838 0.000000e+00 4270.0
1 TraesCS7A01G524000 chr7A 97.799 1363 17 6 152 1507 712073313 712074669 0.000000e+00 2338.0
2 TraesCS7A01G524000 chr1A 98.463 1366 18 2 142 1507 517325938 517327300 0.000000e+00 2403.0
3 TraesCS7A01G524000 chr1A 88.508 1314 90 34 234 1507 493731652 493732944 0.000000e+00 1533.0
4 TraesCS7A01G524000 chr1A 97.386 153 4 0 1 153 15109233 15109081 6.340000e-66 261.0
5 TraesCS7A01G524000 chr1A 97.386 153 4 0 1 153 576049959 576049807 6.340000e-66 261.0
6 TraesCS7A01G524000 chr1A 97.386 153 4 0 1 153 587632418 587632266 6.340000e-66 261.0
7 TraesCS7A01G524000 chr1A 80.833 120 16 6 1573 1689 592300135 592300020 1.140000e-13 87.9
8 TraesCS7A01G524000 chr3B 97.734 1368 21 7 142 1507 503983265 503984624 0.000000e+00 2346.0
9 TraesCS7A01G524000 chr3B 88.286 1400 100 36 152 1507 685226104 685227483 0.000000e+00 1618.0
10 TraesCS7A01G524000 chr2B 88.429 1400 97 38 152 1508 791285616 791284239 0.000000e+00 1628.0
11 TraesCS7A01G524000 chr2B 78.261 138 27 3 1560 1696 211629340 211629205 4.090000e-13 86.1
12 TraesCS7A01G524000 chr3A 88.722 1330 104 28 186 1508 584031808 584033098 0.000000e+00 1583.0
13 TraesCS7A01G524000 chr1D 90.555 1154 75 18 365 1514 481611728 481612851 0.000000e+00 1496.0
14 TraesCS7A01G524000 chr4A 86.207 899 76 25 152 1027 428830157 428829284 0.000000e+00 929.0
15 TraesCS7A01G524000 chr4D 85.395 760 74 18 757 1510 398867544 398868272 0.000000e+00 754.0
16 TraesCS7A01G524000 chr4D 76.154 130 23 5 1568 1695 28840276 28840153 6.900000e-06 62.1
17 TraesCS7A01G524000 chr7D 89.926 407 28 7 1800 2198 614355304 614354903 1.580000e-141 512.0
18 TraesCS7A01G524000 chr7D 81.000 100 15 4 1572 1669 125907600 125907697 2.460000e-10 76.8
19 TraesCS7A01G524000 chr7D 95.455 44 2 0 1560 1603 568233328 568233285 1.150000e-08 71.3
20 TraesCS7A01G524000 chr7B 86.998 423 30 10 1800 2202 706360906 706361323 9.740000e-124 453.0
21 TraesCS7A01G524000 chr7B 90.769 195 15 3 2082 2274 706361347 706361540 8.200000e-65 257.0
22 TraesCS7A01G524000 chr7B 84.375 128 4 8 2082 2198 706361272 706361394 6.750000e-21 111.0
23 TraesCS7A01G524000 chrUn 97.386 153 4 0 1 153 170207573 170207421 6.340000e-66 261.0
24 TraesCS7A01G524000 chr6A 97.386 153 4 0 1 153 14320083 14319931 6.340000e-66 261.0
25 TraesCS7A01G524000 chr6A 97.386 153 4 0 1 153 44855050 44854898 6.340000e-66 261.0
26 TraesCS7A01G524000 chr6A 97.386 153 4 0 1 153 299720996 299720844 6.340000e-66 261.0
27 TraesCS7A01G524000 chr6A 97.386 153 4 0 1 153 421144566 421144414 6.340000e-66 261.0
28 TraesCS7A01G524000 chr6A 97.386 153 4 0 1 153 573122549 573122701 6.340000e-66 261.0
29 TraesCS7A01G524000 chr5D 81.884 138 18 6 1560 1695 357397638 357397506 2.430000e-20 110.0
30 TraesCS7A01G524000 chr5D 81.915 94 14 3 1560 1652 297996856 297996947 2.460000e-10 76.8
31 TraesCS7A01G524000 chr3D 82.278 79 11 3 1562 1638 471581937 471581860 5.330000e-07 65.8
32 TraesCS7A01G524000 chr5A 96.970 33 1 0 1564 1596 613593305 613593273 3.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G524000 chr7A 706401838 706404149 2311 True 4270.000000 4270 100.000000 1 2312 1 chr7A.!!$R1 2311
1 TraesCS7A01G524000 chr7A 712073313 712074669 1356 False 2338.000000 2338 97.799000 152 1507 1 chr7A.!!$F1 1355
2 TraesCS7A01G524000 chr1A 517325938 517327300 1362 False 2403.000000 2403 98.463000 142 1507 1 chr1A.!!$F2 1365
3 TraesCS7A01G524000 chr1A 493731652 493732944 1292 False 1533.000000 1533 88.508000 234 1507 1 chr1A.!!$F1 1273
4 TraesCS7A01G524000 chr3B 503983265 503984624 1359 False 2346.000000 2346 97.734000 142 1507 1 chr3B.!!$F1 1365
5 TraesCS7A01G524000 chr3B 685226104 685227483 1379 False 1618.000000 1618 88.286000 152 1507 1 chr3B.!!$F2 1355
6 TraesCS7A01G524000 chr2B 791284239 791285616 1377 True 1628.000000 1628 88.429000 152 1508 1 chr2B.!!$R2 1356
7 TraesCS7A01G524000 chr3A 584031808 584033098 1290 False 1583.000000 1583 88.722000 186 1508 1 chr3A.!!$F1 1322
8 TraesCS7A01G524000 chr1D 481611728 481612851 1123 False 1496.000000 1496 90.555000 365 1514 1 chr1D.!!$F1 1149
9 TraesCS7A01G524000 chr4A 428829284 428830157 873 True 929.000000 929 86.207000 152 1027 1 chr4A.!!$R1 875
10 TraesCS7A01G524000 chr4D 398867544 398868272 728 False 754.000000 754 85.395000 757 1510 1 chr4D.!!$F1 753
11 TraesCS7A01G524000 chr7B 706360906 706361540 634 False 273.666667 453 87.380667 1800 2274 3 chr7B.!!$F1 474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.03582 GTCCCGGTTAGTGGCATGAA 60.036 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1880 0.031585 GACAAGGTTCCCAAAACGCC 59.968 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.788391 GCATTGTGCTCTGCTTTTGC 59.212 50.000 0.00 0.00 42.74 3.68
35 36 2.835285 GCATTGTGCTCTGCTTTTGCG 61.835 52.381 0.00 0.00 44.32 4.85
44 45 3.134127 GCTTTTGCGCGAGGGGAT 61.134 61.111 12.10 0.00 34.86 3.85
45 46 1.817941 GCTTTTGCGCGAGGGGATA 60.818 57.895 12.10 0.00 34.86 2.59
46 47 1.166531 GCTTTTGCGCGAGGGGATAT 61.167 55.000 12.10 0.00 34.86 1.63
47 48 1.876416 GCTTTTGCGCGAGGGGATATA 60.876 52.381 12.10 0.00 34.86 0.86
48 49 2.699954 CTTTTGCGCGAGGGGATATAT 58.300 47.619 12.10 0.00 0.00 0.86
49 50 3.857052 CTTTTGCGCGAGGGGATATATA 58.143 45.455 12.10 0.00 0.00 0.86
50 51 4.442706 CTTTTGCGCGAGGGGATATATAT 58.557 43.478 12.10 0.00 0.00 0.86
51 52 5.597806 CTTTTGCGCGAGGGGATATATATA 58.402 41.667 12.10 0.00 0.00 0.86
52 53 4.848562 TTGCGCGAGGGGATATATATAG 57.151 45.455 12.10 0.00 0.00 1.31
53 54 3.154710 TGCGCGAGGGGATATATATAGG 58.845 50.000 12.10 0.00 0.00 2.57
54 55 2.094649 GCGCGAGGGGATATATATAGGC 60.095 54.545 12.10 0.00 0.00 3.93
55 56 3.154710 CGCGAGGGGATATATATAGGCA 58.845 50.000 0.00 0.00 0.00 4.75
56 57 3.057456 CGCGAGGGGATATATATAGGCAC 60.057 52.174 0.00 0.00 0.00 5.01
57 58 3.258622 GCGAGGGGATATATATAGGCACC 59.741 52.174 8.10 8.10 0.00 5.01
58 59 4.742012 CGAGGGGATATATATAGGCACCT 58.258 47.826 15.56 15.56 0.00 4.00
59 60 4.767928 CGAGGGGATATATATAGGCACCTC 59.232 50.000 24.13 24.13 38.81 3.85
60 61 5.693051 CGAGGGGATATATATAGGCACCTCA 60.693 48.000 28.68 0.00 41.47 3.86
61 62 6.314697 AGGGGATATATATAGGCACCTCAT 57.685 41.667 11.58 0.00 0.00 2.90
62 63 6.707868 AGGGGATATATATAGGCACCTCATT 58.292 40.000 11.58 0.00 0.00 2.57
63 64 6.560304 AGGGGATATATATAGGCACCTCATTG 59.440 42.308 11.58 0.00 0.00 2.82
64 65 6.240002 GGGGATATATATAGGCACCTCATTGG 60.240 46.154 8.68 0.00 42.93 3.16
74 75 3.780624 CCTCATTGGTCCCGGTTAG 57.219 57.895 0.00 0.00 0.00 2.34
75 76 0.909623 CCTCATTGGTCCCGGTTAGT 59.090 55.000 0.00 0.00 0.00 2.24
76 77 1.406887 CCTCATTGGTCCCGGTTAGTG 60.407 57.143 0.00 0.00 0.00 2.74
77 78 0.616371 TCATTGGTCCCGGTTAGTGG 59.384 55.000 0.00 0.00 0.00 4.00
78 79 1.029947 CATTGGTCCCGGTTAGTGGC 61.030 60.000 0.00 0.00 0.00 5.01
79 80 1.493854 ATTGGTCCCGGTTAGTGGCA 61.494 55.000 0.00 0.00 0.00 4.92
80 81 1.493854 TTGGTCCCGGTTAGTGGCAT 61.494 55.000 0.00 0.00 0.00 4.40
81 82 1.451387 GGTCCCGGTTAGTGGCATG 60.451 63.158 0.00 0.00 0.00 4.06
82 83 1.600107 GTCCCGGTTAGTGGCATGA 59.400 57.895 0.00 0.00 0.00 3.07
83 84 0.035820 GTCCCGGTTAGTGGCATGAA 60.036 55.000 0.00 0.00 0.00 2.57
84 85 0.035820 TCCCGGTTAGTGGCATGAAC 60.036 55.000 0.00 0.00 0.00 3.18
85 86 1.029947 CCCGGTTAGTGGCATGAACC 61.030 60.000 18.63 18.63 39.44 3.62
87 88 2.477880 GGTTAGTGGCATGAACCGG 58.522 57.895 15.19 0.00 33.75 5.28
88 89 1.029947 GGTTAGTGGCATGAACCGGG 61.030 60.000 15.19 0.00 33.75 5.73
89 90 0.035820 GTTAGTGGCATGAACCGGGA 60.036 55.000 6.32 0.00 0.00 5.14
90 91 0.035820 TTAGTGGCATGAACCGGGAC 60.036 55.000 6.32 0.00 0.00 4.46
91 92 0.907704 TAGTGGCATGAACCGGGACT 60.908 55.000 6.32 0.00 0.00 3.85
92 93 0.907704 AGTGGCATGAACCGGGACTA 60.908 55.000 6.32 0.00 0.00 2.59
93 94 0.035820 GTGGCATGAACCGGGACTAA 60.036 55.000 6.32 0.00 0.00 2.24
94 95 0.693622 TGGCATGAACCGGGACTAAA 59.306 50.000 6.32 0.00 0.00 1.85
95 96 1.339631 TGGCATGAACCGGGACTAAAG 60.340 52.381 6.32 0.00 0.00 1.85
96 97 1.379527 GCATGAACCGGGACTAAAGG 58.620 55.000 6.32 0.00 0.00 3.11
97 98 2.017113 GCATGAACCGGGACTAAAGGG 61.017 57.143 6.32 0.00 0.00 3.95
98 99 0.916809 ATGAACCGGGACTAAAGGGG 59.083 55.000 6.32 0.00 0.00 4.79
99 100 0.178897 TGAACCGGGACTAAAGGGGA 60.179 55.000 6.32 0.00 0.00 4.81
100 101 0.540454 GAACCGGGACTAAAGGGGAG 59.460 60.000 6.32 0.00 0.00 4.30
101 102 1.559965 AACCGGGACTAAAGGGGAGC 61.560 60.000 6.32 0.00 0.00 4.70
102 103 2.743179 CCGGGACTAAAGGGGAGCC 61.743 68.421 0.00 0.00 0.00 4.70
103 104 1.689582 CGGGACTAAAGGGGAGCCT 60.690 63.158 0.00 0.00 0.00 4.58
104 105 1.272554 CGGGACTAAAGGGGAGCCTT 61.273 60.000 0.00 0.00 0.00 4.35
105 106 1.000496 GGGACTAAAGGGGAGCCTTT 59.000 55.000 0.00 0.00 41.97 3.11
106 107 1.341089 GGGACTAAAGGGGAGCCTTTG 60.341 57.143 0.00 0.00 39.87 2.77
107 108 1.341089 GGACTAAAGGGGAGCCTTTGG 60.341 57.143 0.00 0.00 41.76 3.28
108 109 1.456919 ACTAAAGGGGAGCCTTTGGT 58.543 50.000 0.00 0.00 43.30 3.67
109 110 1.354705 ACTAAAGGGGAGCCTTTGGTC 59.645 52.381 0.00 0.00 44.24 4.02
115 116 2.434774 GAGCCTTTGGTCCCGGTT 59.565 61.111 0.00 0.00 32.76 4.44
116 117 1.674651 GAGCCTTTGGTCCCGGTTC 60.675 63.158 0.00 0.00 32.76 3.62
117 118 2.114411 GCCTTTGGTCCCGGTTCA 59.886 61.111 0.00 0.00 0.00 3.18
118 119 1.529713 GCCTTTGGTCCCGGTTCAA 60.530 57.895 0.00 0.00 0.00 2.69
119 120 1.524008 GCCTTTGGTCCCGGTTCAAG 61.524 60.000 0.00 0.00 0.00 3.02
120 121 1.524008 CCTTTGGTCCCGGTTCAAGC 61.524 60.000 0.00 0.00 0.00 4.01
121 122 1.524008 CTTTGGTCCCGGTTCAAGCC 61.524 60.000 0.00 0.00 0.00 4.35
122 123 2.285889 TTTGGTCCCGGTTCAAGCCA 62.286 55.000 0.00 0.00 0.00 4.75
123 124 2.671963 GGTCCCGGTTCAAGCCAC 60.672 66.667 0.00 0.00 0.00 5.01
124 125 2.671963 GTCCCGGTTCAAGCCACC 60.672 66.667 0.00 0.00 0.00 4.61
125 126 3.172106 TCCCGGTTCAAGCCACCA 61.172 61.111 0.00 0.00 33.36 4.17
126 127 2.203422 CCCGGTTCAAGCCACCAA 60.203 61.111 0.00 0.00 33.36 3.67
127 128 2.561037 CCCGGTTCAAGCCACCAAC 61.561 63.158 0.00 0.00 33.36 3.77
128 129 2.561037 CCGGTTCAAGCCACCAACC 61.561 63.158 0.00 0.00 36.91 3.77
129 130 3.039134 GGTTCAAGCCACCAACCG 58.961 61.111 0.00 0.00 34.04 4.44
130 131 2.561037 GGTTCAAGCCACCAACCGG 61.561 63.158 0.00 0.00 34.04 5.28
131 132 2.203422 TTCAAGCCACCAACCGGG 60.203 61.111 6.32 0.00 44.81 5.73
132 133 2.758207 TTCAAGCCACCAACCGGGA 61.758 57.895 6.32 0.00 41.15 5.14
133 134 2.969300 TTCAAGCCACCAACCGGGAC 62.969 60.000 6.32 0.00 41.15 4.46
134 135 4.280019 AAGCCACCAACCGGGACC 62.280 66.667 6.32 0.00 41.15 4.46
136 137 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
137 138 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
138 139 1.976474 CCACCAACCGGGACCAATG 60.976 63.158 6.32 0.00 41.15 2.82
139 140 1.976474 CACCAACCGGGACCAATGG 60.976 63.158 6.32 0.00 41.15 3.16
140 141 2.438795 CCAACCGGGACCAATGGT 59.561 61.111 3.74 3.74 40.01 3.55
141 142 1.976474 CCAACCGGGACCAATGGTG 60.976 63.158 10.84 0.00 40.01 4.17
273 274 2.857483 TCAGCGGAATTTCCTTTCACA 58.143 42.857 13.45 0.00 33.30 3.58
274 275 3.420893 TCAGCGGAATTTCCTTTCACAT 58.579 40.909 13.45 0.00 33.30 3.21
484 506 6.295011 CCTTCCTAATTTGTGTATGTTTGCCA 60.295 38.462 0.00 0.00 0.00 4.92
592 616 4.211164 CCTGTGTATTGTATACGCACATGG 59.789 45.833 16.84 15.77 39.02 3.66
1154 1275 3.774066 CATGGCCCGAAAGAATCTTTTC 58.226 45.455 9.84 2.93 34.48 2.29
1233 1355 4.652421 TGGTTTGGCTACATTATGCATG 57.348 40.909 10.16 0.00 39.07 4.06
1281 1403 5.131594 ACATCGACCTCATCATATGTGAG 57.868 43.478 19.90 19.90 42.11 3.51
1514 1643 3.699134 GACCGGCCCTGGATCAACC 62.699 68.421 0.00 0.00 39.54 3.77
1515 1644 3.411517 CCGGCCCTGGATCAACCT 61.412 66.667 0.00 0.00 39.86 3.50
1516 1645 2.124570 CGGCCCTGGATCAACCTG 60.125 66.667 0.00 0.00 39.86 4.00
1517 1646 2.440980 GGCCCTGGATCAACCTGC 60.441 66.667 0.00 0.00 39.86 4.85
1518 1647 2.356278 GCCCTGGATCAACCTGCA 59.644 61.111 0.00 0.00 39.86 4.41
1519 1648 1.751927 GCCCTGGATCAACCTGCAG 60.752 63.158 6.78 6.78 39.86 4.41
1520 1649 1.751927 CCCTGGATCAACCTGCAGC 60.752 63.158 8.66 0.00 39.86 5.25
1521 1650 1.302285 CCTGGATCAACCTGCAGCT 59.698 57.895 8.66 0.00 39.86 4.24
1522 1651 1.030488 CCTGGATCAACCTGCAGCTG 61.030 60.000 10.11 10.11 39.86 4.24
1523 1652 1.001764 TGGATCAACCTGCAGCTGG 60.002 57.895 17.12 16.57 39.86 4.85
1524 1653 1.300963 GGATCAACCTGCAGCTGGA 59.699 57.895 24.37 12.70 35.41 3.86
1525 1654 1.028868 GGATCAACCTGCAGCTGGAC 61.029 60.000 24.37 0.00 35.41 4.02
1526 1655 0.321919 GATCAACCTGCAGCTGGACA 60.322 55.000 24.37 4.74 0.00 4.02
1527 1656 0.322277 ATCAACCTGCAGCTGGACAG 60.322 55.000 24.37 14.64 0.00 3.51
1528 1657 1.228063 CAACCTGCAGCTGGACAGT 60.228 57.895 24.37 8.13 31.76 3.55
1529 1658 1.072159 AACCTGCAGCTGGACAGTC 59.928 57.895 24.37 0.00 31.76 3.51
1530 1659 1.699054 AACCTGCAGCTGGACAGTCA 61.699 55.000 24.37 2.34 31.76 3.41
1531 1660 1.071987 CCTGCAGCTGGACAGTCAA 59.928 57.895 17.12 0.00 31.76 3.18
1532 1661 0.954449 CCTGCAGCTGGACAGTCAAG 60.954 60.000 17.12 0.00 31.76 3.02
1533 1662 1.575576 CTGCAGCTGGACAGTCAAGC 61.576 60.000 21.13 21.13 0.00 4.01
1534 1663 1.598962 GCAGCTGGACAGTCAAGCA 60.599 57.895 28.58 5.35 0.00 3.91
1535 1664 0.959372 GCAGCTGGACAGTCAAGCAT 60.959 55.000 28.58 13.13 0.00 3.79
1536 1665 0.803117 CAGCTGGACAGTCAAGCATG 59.197 55.000 28.58 19.66 0.00 4.06
1537 1666 0.322277 AGCTGGACAGTCAAGCATGG 60.322 55.000 28.58 0.00 0.00 3.66
1538 1667 0.607489 GCTGGACAGTCAAGCATGGT 60.607 55.000 23.33 0.00 0.00 3.55
1539 1668 1.446907 CTGGACAGTCAAGCATGGTC 58.553 55.000 2.17 0.00 0.00 4.02
1540 1669 0.320683 TGGACAGTCAAGCATGGTCG 60.321 55.000 2.17 0.00 0.00 4.79
1541 1670 0.320771 GGACAGTCAAGCATGGTCGT 60.321 55.000 2.17 0.00 0.00 4.34
1542 1671 1.512926 GACAGTCAAGCATGGTCGTT 58.487 50.000 0.00 0.00 0.00 3.85
1543 1672 1.873591 GACAGTCAAGCATGGTCGTTT 59.126 47.619 0.00 0.00 0.00 3.60
1544 1673 2.290641 GACAGTCAAGCATGGTCGTTTT 59.709 45.455 0.00 0.00 0.00 2.43
1545 1674 3.472652 ACAGTCAAGCATGGTCGTTTTA 58.527 40.909 0.00 0.00 0.00 1.52
1546 1675 4.072131 ACAGTCAAGCATGGTCGTTTTAT 58.928 39.130 0.00 0.00 0.00 1.40
1547 1676 4.518970 ACAGTCAAGCATGGTCGTTTTATT 59.481 37.500 0.00 0.00 0.00 1.40
1548 1677 5.009610 ACAGTCAAGCATGGTCGTTTTATTT 59.990 36.000 0.00 0.00 0.00 1.40
1549 1678 6.205853 ACAGTCAAGCATGGTCGTTTTATTTA 59.794 34.615 0.00 0.00 0.00 1.40
1550 1679 6.523201 CAGTCAAGCATGGTCGTTTTATTTAC 59.477 38.462 0.00 0.00 0.00 2.01
1551 1680 6.205853 AGTCAAGCATGGTCGTTTTATTTACA 59.794 34.615 0.00 0.00 0.00 2.41
1552 1681 6.523201 GTCAAGCATGGTCGTTTTATTTACAG 59.477 38.462 0.00 0.00 0.00 2.74
1553 1682 6.205853 TCAAGCATGGTCGTTTTATTTACAGT 59.794 34.615 0.00 0.00 0.00 3.55
1554 1683 6.569179 AGCATGGTCGTTTTATTTACAGTT 57.431 33.333 0.00 0.00 0.00 3.16
1555 1684 6.977213 AGCATGGTCGTTTTATTTACAGTTT 58.023 32.000 0.00 0.00 0.00 2.66
1556 1685 6.861055 AGCATGGTCGTTTTATTTACAGTTTG 59.139 34.615 0.00 0.00 0.00 2.93
1557 1686 6.399564 GCATGGTCGTTTTATTTACAGTTTGC 60.400 38.462 0.00 0.00 0.00 3.68
1558 1687 5.206299 TGGTCGTTTTATTTACAGTTTGCG 58.794 37.500 0.00 0.00 0.00 4.85
1559 1688 5.207033 GGTCGTTTTATTTACAGTTTGCGT 58.793 37.500 0.00 0.00 0.00 5.24
1560 1689 6.018425 TGGTCGTTTTATTTACAGTTTGCGTA 60.018 34.615 0.00 0.00 0.00 4.42
1561 1690 6.517374 GGTCGTTTTATTTACAGTTTGCGTAG 59.483 38.462 0.00 0.00 0.00 3.51
1562 1691 6.517374 GTCGTTTTATTTACAGTTTGCGTAGG 59.483 38.462 0.00 0.00 0.00 3.18
1563 1692 6.202570 TCGTTTTATTTACAGTTTGCGTAGGT 59.797 34.615 0.00 0.00 0.00 3.08
1564 1693 6.517374 CGTTTTATTTACAGTTTGCGTAGGTC 59.483 38.462 0.00 0.00 0.00 3.85
1565 1694 7.569957 CGTTTTATTTACAGTTTGCGTAGGTCT 60.570 37.037 0.00 0.00 0.00 3.85
1566 1695 7.733402 TTTATTTACAGTTTGCGTAGGTCTT 57.267 32.000 0.00 0.00 0.00 3.01
1567 1696 8.830201 TTTATTTACAGTTTGCGTAGGTCTTA 57.170 30.769 0.00 0.00 0.00 2.10
1568 1697 6.963049 ATTTACAGTTTGCGTAGGTCTTAG 57.037 37.500 0.00 0.00 0.00 2.18
1569 1698 5.458041 TTACAGTTTGCGTAGGTCTTAGT 57.542 39.130 0.00 0.00 0.00 2.24
1570 1699 4.332428 ACAGTTTGCGTAGGTCTTAGTT 57.668 40.909 0.00 0.00 0.00 2.24
1571 1700 4.056050 ACAGTTTGCGTAGGTCTTAGTTG 58.944 43.478 0.00 0.00 0.00 3.16
1572 1701 4.202182 ACAGTTTGCGTAGGTCTTAGTTGA 60.202 41.667 0.00 0.00 0.00 3.18
1573 1702 4.150098 CAGTTTGCGTAGGTCTTAGTTGAC 59.850 45.833 0.00 0.00 36.31 3.18
1574 1703 4.038883 AGTTTGCGTAGGTCTTAGTTGACT 59.961 41.667 0.00 0.00 37.16 3.41
1575 1704 3.570926 TGCGTAGGTCTTAGTTGACTG 57.429 47.619 0.00 0.00 37.16 3.51
1576 1705 3.151554 TGCGTAGGTCTTAGTTGACTGA 58.848 45.455 0.00 0.00 37.16 3.41
1577 1706 3.190744 TGCGTAGGTCTTAGTTGACTGAG 59.809 47.826 0.00 0.00 37.16 3.35
1578 1707 3.439476 GCGTAGGTCTTAGTTGACTGAGA 59.561 47.826 1.89 1.89 36.42 3.27
1608 1737 9.512588 AATCAAGTCTCAATCAAGTGATAAAGT 57.487 29.630 0.00 0.00 33.73 2.66
1667 1796 6.552859 TTTTGTACGAATCTTCATGCAAGA 57.447 33.333 9.18 9.18 45.60 3.02
1686 1815 9.999009 ATGCAAGATTAAATGAATATAGCATCG 57.001 29.630 0.00 0.00 35.13 3.84
1687 1816 9.218440 TGCAAGATTAAATGAATATAGCATCGA 57.782 29.630 0.00 0.00 0.00 3.59
1688 1817 9.483062 GCAAGATTAAATGAATATAGCATCGAC 57.517 33.333 0.00 0.00 0.00 4.20
1689 1818 9.979270 CAAGATTAAATGAATATAGCATCGACC 57.021 33.333 0.00 0.00 0.00 4.79
1690 1819 8.412608 AGATTAAATGAATATAGCATCGACCG 57.587 34.615 0.00 0.00 0.00 4.79
1691 1820 8.251026 AGATTAAATGAATATAGCATCGACCGA 58.749 33.333 0.00 0.00 0.00 4.69
1692 1821 7.812309 TTAAATGAATATAGCATCGACCGAG 57.188 36.000 0.00 0.00 0.00 4.63
1693 1822 5.644977 AATGAATATAGCATCGACCGAGA 57.355 39.130 0.00 0.00 0.00 4.04
1694 1823 4.421033 TGAATATAGCATCGACCGAGAC 57.579 45.455 0.00 0.00 0.00 3.36
1695 1824 4.072839 TGAATATAGCATCGACCGAGACT 58.927 43.478 0.00 0.76 0.00 3.24
1696 1825 4.154375 TGAATATAGCATCGACCGAGACTC 59.846 45.833 0.00 0.00 0.00 3.36
1697 1826 2.264005 ATAGCATCGACCGAGACTCT 57.736 50.000 0.03 0.00 0.00 3.24
1698 1827 2.904697 TAGCATCGACCGAGACTCTA 57.095 50.000 0.03 0.00 0.00 2.43
1699 1828 1.301423 AGCATCGACCGAGACTCTAC 58.699 55.000 0.03 0.00 0.00 2.59
1700 1829 1.134340 AGCATCGACCGAGACTCTACT 60.134 52.381 0.03 0.00 0.00 2.57
1701 1830 1.003331 GCATCGACCGAGACTCTACTG 60.003 57.143 0.03 0.00 0.00 2.74
1702 1831 2.552031 CATCGACCGAGACTCTACTGA 58.448 52.381 0.03 0.00 0.00 3.41
1703 1832 2.756840 TCGACCGAGACTCTACTGAA 57.243 50.000 0.03 0.00 0.00 3.02
1704 1833 3.049708 TCGACCGAGACTCTACTGAAA 57.950 47.619 0.03 0.00 0.00 2.69
1705 1834 2.740981 TCGACCGAGACTCTACTGAAAC 59.259 50.000 0.03 0.00 0.00 2.78
1706 1835 2.743126 CGACCGAGACTCTACTGAAACT 59.257 50.000 0.03 0.00 0.00 2.66
1707 1836 3.188873 CGACCGAGACTCTACTGAAACTT 59.811 47.826 0.03 0.00 0.00 2.66
1708 1837 4.391216 CGACCGAGACTCTACTGAAACTTA 59.609 45.833 0.03 0.00 0.00 2.24
1709 1838 5.446206 CGACCGAGACTCTACTGAAACTTAG 60.446 48.000 0.03 0.00 0.00 2.18
1710 1839 4.156373 ACCGAGACTCTACTGAAACTTAGC 59.844 45.833 0.03 0.00 0.00 3.09
1711 1840 4.156190 CCGAGACTCTACTGAAACTTAGCA 59.844 45.833 0.03 0.00 0.00 3.49
1712 1841 5.335740 CCGAGACTCTACTGAAACTTAGCAA 60.336 44.000 0.03 0.00 0.00 3.91
1713 1842 6.150318 CGAGACTCTACTGAAACTTAGCAAA 58.850 40.000 0.03 0.00 0.00 3.68
1714 1843 6.641314 CGAGACTCTACTGAAACTTAGCAAAA 59.359 38.462 0.03 0.00 0.00 2.44
1715 1844 7.358517 CGAGACTCTACTGAAACTTAGCAAAAC 60.359 40.741 0.03 0.00 0.00 2.43
1716 1845 7.501844 AGACTCTACTGAAACTTAGCAAAACT 58.498 34.615 0.00 0.00 0.00 2.66
1717 1846 7.439655 AGACTCTACTGAAACTTAGCAAAACTG 59.560 37.037 0.00 0.00 0.00 3.16
1718 1847 7.048512 ACTCTACTGAAACTTAGCAAAACTGT 58.951 34.615 0.00 0.00 0.00 3.55
1719 1848 7.553044 ACTCTACTGAAACTTAGCAAAACTGTT 59.447 33.333 0.00 0.00 0.00 3.16
1720 1849 8.951787 TCTACTGAAACTTAGCAAAACTGTTA 57.048 30.769 0.00 0.00 0.00 2.41
1721 1850 9.042008 TCTACTGAAACTTAGCAAAACTGTTAG 57.958 33.333 0.00 0.00 0.00 2.34
1722 1851 7.625828 ACTGAAACTTAGCAAAACTGTTAGT 57.374 32.000 0.00 0.00 0.00 2.24
1723 1852 8.051901 ACTGAAACTTAGCAAAACTGTTAGTT 57.948 30.769 0.00 0.00 40.80 2.24
1735 1864 5.699097 AACTGTTAGTTTTGTGTGTGTGT 57.301 34.783 0.00 0.00 34.11 3.72
1736 1865 6.804770 AACTGTTAGTTTTGTGTGTGTGTA 57.195 33.333 0.00 0.00 34.11 2.90
1737 1866 6.173191 ACTGTTAGTTTTGTGTGTGTGTAC 57.827 37.500 0.00 0.00 0.00 2.90
1738 1867 5.163933 ACTGTTAGTTTTGTGTGTGTGTACG 60.164 40.000 0.00 0.00 0.00 3.67
1739 1868 2.817538 AGTTTTGTGTGTGTGTACGC 57.182 45.000 0.00 0.00 37.82 4.42
1740 1869 2.077627 AGTTTTGTGTGTGTGTACGCA 58.922 42.857 4.65 4.65 44.51 5.24
1745 1874 3.209266 TGTGTGTGTACGCATGGAG 57.791 52.632 13.08 0.00 42.05 3.86
1746 1875 0.391228 TGTGTGTGTACGCATGGAGT 59.609 50.000 13.08 0.00 42.05 3.85
1747 1876 1.202592 TGTGTGTGTACGCATGGAGTT 60.203 47.619 13.08 0.00 42.05 3.01
1748 1877 1.871039 GTGTGTGTACGCATGGAGTTT 59.129 47.619 13.08 0.00 38.74 2.66
1749 1878 2.096417 GTGTGTGTACGCATGGAGTTTC 60.096 50.000 13.08 0.00 38.74 2.78
1750 1879 2.139917 GTGTGTACGCATGGAGTTTCA 58.860 47.619 13.08 0.00 0.00 2.69
1751 1880 2.157668 GTGTGTACGCATGGAGTTTCAG 59.842 50.000 13.08 0.00 0.00 3.02
1752 1881 1.732259 GTGTACGCATGGAGTTTCAGG 59.268 52.381 0.39 0.00 0.00 3.86
1753 1882 0.727398 GTACGCATGGAGTTTCAGGC 59.273 55.000 0.00 0.00 40.55 4.85
1755 1884 3.987404 GCATGGAGTTTCAGGCGT 58.013 55.556 0.00 0.00 34.78 5.68
1756 1885 2.257353 GCATGGAGTTTCAGGCGTT 58.743 52.632 0.00 0.00 34.78 4.84
1757 1886 0.598065 GCATGGAGTTTCAGGCGTTT 59.402 50.000 0.00 0.00 34.78 3.60
1758 1887 1.000274 GCATGGAGTTTCAGGCGTTTT 60.000 47.619 0.00 0.00 34.78 2.43
1759 1888 2.664916 CATGGAGTTTCAGGCGTTTTG 58.335 47.619 0.00 0.00 0.00 2.44
1760 1889 1.028905 TGGAGTTTCAGGCGTTTTGG 58.971 50.000 0.00 0.00 0.00 3.28
1761 1890 0.313987 GGAGTTTCAGGCGTTTTGGG 59.686 55.000 0.00 0.00 0.00 4.12
1762 1891 1.314730 GAGTTTCAGGCGTTTTGGGA 58.685 50.000 0.00 0.00 0.00 4.37
1763 1892 1.679153 GAGTTTCAGGCGTTTTGGGAA 59.321 47.619 0.00 0.00 0.00 3.97
1764 1893 1.407618 AGTTTCAGGCGTTTTGGGAAC 59.592 47.619 0.00 0.00 0.00 3.62
1782 1911 5.975410 GGAACCTTGTCATTATTCTCGAG 57.025 43.478 5.93 5.93 0.00 4.04
1783 1912 5.661458 GGAACCTTGTCATTATTCTCGAGA 58.339 41.667 12.08 12.08 0.00 4.04
1784 1913 6.284459 GGAACCTTGTCATTATTCTCGAGAT 58.716 40.000 17.44 9.12 0.00 2.75
1785 1914 6.763610 GGAACCTTGTCATTATTCTCGAGATT 59.236 38.462 17.44 15.38 0.00 2.40
1786 1915 7.281100 GGAACCTTGTCATTATTCTCGAGATTT 59.719 37.037 17.44 9.72 0.00 2.17
1787 1916 8.567285 AACCTTGTCATTATTCTCGAGATTTT 57.433 30.769 17.44 7.10 0.00 1.82
1788 1917 8.202745 ACCTTGTCATTATTCTCGAGATTTTC 57.797 34.615 17.44 4.49 0.00 2.29
1789 1918 7.281100 ACCTTGTCATTATTCTCGAGATTTTCC 59.719 37.037 17.44 2.31 0.00 3.13
1790 1919 7.254932 CCTTGTCATTATTCTCGAGATTTTCCC 60.255 40.741 17.44 2.94 0.00 3.97
1791 1920 6.649155 TGTCATTATTCTCGAGATTTTCCCA 58.351 36.000 17.44 5.56 0.00 4.37
1792 1921 7.109501 TGTCATTATTCTCGAGATTTTCCCAA 58.890 34.615 17.44 4.07 0.00 4.12
1793 1922 7.280876 TGTCATTATTCTCGAGATTTTCCCAAG 59.719 37.037 17.44 1.08 0.00 3.61
1794 1923 7.281100 GTCATTATTCTCGAGATTTTCCCAAGT 59.719 37.037 17.44 0.00 0.00 3.16
1795 1924 6.985188 TTATTCTCGAGATTTTCCCAAGTG 57.015 37.500 17.44 0.00 0.00 3.16
1796 1925 4.351874 TTCTCGAGATTTTCCCAAGTGT 57.648 40.909 17.44 0.00 0.00 3.55
1797 1926 4.351874 TCTCGAGATTTTCCCAAGTGTT 57.648 40.909 12.08 0.00 0.00 3.32
1798 1927 4.714632 TCTCGAGATTTTCCCAAGTGTTT 58.285 39.130 12.08 0.00 0.00 2.83
1824 1953 2.821546 TCTTTCCTATGCATTCCGTCG 58.178 47.619 3.54 0.00 0.00 5.12
1831 1960 1.750193 ATGCATTCCGTCGAATTGGT 58.250 45.000 0.00 0.00 36.54 3.67
1839 1968 4.131649 TCCGTCGAATTGGTATGTCAAT 57.868 40.909 0.00 0.00 38.84 2.57
1847 1976 6.878923 TCGAATTGGTATGTCAATCTTCTTGT 59.121 34.615 0.00 0.00 36.45 3.16
1848 1977 8.038351 TCGAATTGGTATGTCAATCTTCTTGTA 58.962 33.333 0.00 0.00 36.45 2.41
1850 1979 8.862325 AATTGGTATGTCAATCTTCTTGTACA 57.138 30.769 0.00 0.00 36.45 2.90
1869 2000 5.870433 TGTACATAAACGTGATACAGTTGGG 59.130 40.000 0.00 0.00 0.00 4.12
1892 2023 0.550914 TTCGATTCAATGGGGGAGGG 59.449 55.000 0.00 0.00 0.00 4.30
1900 2031 0.929244 AATGGGGGAGGGACATGAAG 59.071 55.000 0.00 0.00 0.00 3.02
1955 2092 1.203364 AGTGACCAGACATTCCCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
1975 2112 3.536012 TCTCCCTAGCCATAGCCCATATA 59.464 47.826 0.00 0.00 41.25 0.86
1984 2121 4.823989 GCCATAGCCCATATATGTTCATCC 59.176 45.833 11.73 0.00 0.00 3.51
2039 2177 7.230712 GGGACCATCTATAATTTGGTTGTTAGG 59.769 40.741 0.40 0.00 43.67 2.69
2041 2179 9.841295 GACCATCTATAATTTGGTTGTTAGGTA 57.159 33.333 0.40 0.00 43.67 3.08
2057 2195 7.989947 TGTTAGGTATGGATTCTACCTCTTT 57.010 36.000 7.67 0.00 44.54 2.52
2087 2225 0.905357 TAGCACAGAGAAGGGAAGGC 59.095 55.000 0.00 0.00 0.00 4.35
2133 2354 4.289672 AGGGTTATATATTCCAGCACAGGG 59.710 45.833 0.00 0.00 0.00 4.45
2141 2362 3.627395 TTCCAGCACAGGGTTATACAG 57.373 47.619 0.00 0.00 0.00 2.74
2184 2473 8.650143 ATCCATCTGTAATTTTGTTGTTAGGT 57.350 30.769 0.00 0.00 0.00 3.08
2198 2487 9.860650 TTTGTTGTTAGGTATATATTCCAGCAT 57.139 29.630 10.67 0.00 0.00 3.79
2212 2501 8.846943 ATATTCCAGCATATGTTTGAATACGA 57.153 30.769 20.90 8.29 30.18 3.43
2217 2506 7.931407 TCCAGCATATGTTTGAATACGATTACT 59.069 33.333 4.29 0.00 0.00 2.24
2250 2540 4.102818 AGCTGAGCTTAAACGTGAGTGTC 61.103 47.826 0.00 0.00 38.96 3.67
2275 2565 3.994204 CATGCATGCATTAGGCTAACA 57.006 42.857 30.32 4.53 45.15 2.41
2276 2566 4.310357 CATGCATGCATTAGGCTAACAA 57.690 40.909 30.32 0.00 45.15 2.83
2277 2567 4.684877 CATGCATGCATTAGGCTAACAAA 58.315 39.130 30.32 0.00 45.15 2.83
2278 2568 4.797800 TGCATGCATTAGGCTAACAAAA 57.202 36.364 18.46 0.00 45.15 2.44
2279 2569 5.144692 TGCATGCATTAGGCTAACAAAAA 57.855 34.783 18.46 0.00 45.15 1.94
2280 2570 4.928615 TGCATGCATTAGGCTAACAAAAAC 59.071 37.500 18.46 0.00 45.15 2.43
2281 2571 4.928615 GCATGCATTAGGCTAACAAAAACA 59.071 37.500 14.21 2.53 45.15 2.83
2282 2572 5.163963 GCATGCATTAGGCTAACAAAAACAC 60.164 40.000 14.21 0.00 45.15 3.32
2283 2573 5.782893 TGCATTAGGCTAACAAAAACACT 57.217 34.783 9.55 0.00 45.15 3.55
2284 2574 6.885952 TGCATTAGGCTAACAAAAACACTA 57.114 33.333 9.55 0.00 45.15 2.74
2285 2575 6.908825 TGCATTAGGCTAACAAAAACACTAG 58.091 36.000 9.55 0.00 45.15 2.57
2286 2576 6.712998 TGCATTAGGCTAACAAAAACACTAGA 59.287 34.615 9.55 0.00 45.15 2.43
2287 2577 7.229707 TGCATTAGGCTAACAAAAACACTAGAA 59.770 33.333 9.55 0.00 45.15 2.10
2288 2578 8.079809 GCATTAGGCTAACAAAAACACTAGAAA 58.920 33.333 9.55 0.00 40.25 2.52
2291 2581 9.569122 TTAGGCTAACAAAAACACTAGAAATCT 57.431 29.630 2.04 0.00 0.00 2.40
2293 2583 9.569122 AGGCTAACAAAAACACTAGAAATCTAA 57.431 29.630 0.00 0.00 0.00 2.10
2294 2584 9.827411 GGCTAACAAAAACACTAGAAATCTAAG 57.173 33.333 0.00 0.00 0.00 2.18
2295 2585 9.827411 GCTAACAAAAACACTAGAAATCTAAGG 57.173 33.333 0.00 0.00 0.00 2.69
2298 2588 8.974060 ACAAAAACACTAGAAATCTAAGGTCA 57.026 30.769 0.00 0.00 0.00 4.02
2299 2589 9.057089 ACAAAAACACTAGAAATCTAAGGTCAG 57.943 33.333 0.00 0.00 0.00 3.51
2300 2590 9.273016 CAAAAACACTAGAAATCTAAGGTCAGA 57.727 33.333 0.00 0.00 0.00 3.27
2301 2591 9.847224 AAAAACACTAGAAATCTAAGGTCAGAA 57.153 29.630 0.00 0.00 0.00 3.02
2309 2599 8.512966 AGAAATCTAAGGTCAGAATTTTAGGC 57.487 34.615 0.00 0.00 0.00 3.93
2310 2600 6.927294 AATCTAAGGTCAGAATTTTAGGCG 57.073 37.500 0.00 0.00 0.00 5.52
2311 2601 5.416271 TCTAAGGTCAGAATTTTAGGCGT 57.584 39.130 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.788391 GCAAAAGCAGAGCACAATGC 59.212 50.000 0.00 0.00 45.46 3.56
16 17 1.057636 CGCAAAAGCAGAGCACAATG 58.942 50.000 0.00 0.00 0.00 2.82
17 18 0.665369 GCGCAAAAGCAGAGCACAAT 60.665 50.000 0.30 0.00 37.05 2.71
18 19 1.299316 GCGCAAAAGCAGAGCACAA 60.299 52.632 0.30 0.00 37.05 3.33
19 20 2.332514 GCGCAAAAGCAGAGCACA 59.667 55.556 0.30 0.00 37.05 4.57
20 21 2.798262 CGCGCAAAAGCAGAGCAC 60.798 61.111 8.75 0.00 36.85 4.40
21 22 2.958204 CTCGCGCAAAAGCAGAGCA 61.958 57.895 8.75 0.00 36.85 4.26
22 23 2.202272 CTCGCGCAAAAGCAGAGC 60.202 61.111 8.75 0.00 36.85 4.09
23 24 2.477845 CCTCGCGCAAAAGCAGAG 59.522 61.111 8.75 3.49 37.45 3.35
24 25 3.049674 CCCTCGCGCAAAAGCAGA 61.050 61.111 8.75 0.00 36.85 4.26
25 26 4.107051 CCCCTCGCGCAAAAGCAG 62.107 66.667 8.75 0.00 36.85 4.24
26 27 2.529454 TATCCCCTCGCGCAAAAGCA 62.529 55.000 8.75 0.00 36.85 3.91
27 28 1.166531 ATATCCCCTCGCGCAAAAGC 61.167 55.000 8.75 0.00 0.00 3.51
28 29 2.163818 TATATCCCCTCGCGCAAAAG 57.836 50.000 8.75 0.67 0.00 2.27
29 30 2.851263 ATATATCCCCTCGCGCAAAA 57.149 45.000 8.75 0.00 0.00 2.44
30 31 4.038763 CCTATATATATCCCCTCGCGCAAA 59.961 45.833 8.75 0.00 0.00 3.68
31 32 3.572682 CCTATATATATCCCCTCGCGCAA 59.427 47.826 8.75 0.00 0.00 4.85
32 33 3.154710 CCTATATATATCCCCTCGCGCA 58.845 50.000 8.75 0.00 0.00 6.09
33 34 2.094649 GCCTATATATATCCCCTCGCGC 60.095 54.545 0.00 0.00 0.00 6.86
34 35 3.057456 GTGCCTATATATATCCCCTCGCG 60.057 52.174 0.00 0.00 0.00 5.87
35 36 3.258622 GGTGCCTATATATATCCCCTCGC 59.741 52.174 0.00 0.00 0.00 5.03
36 37 4.742012 AGGTGCCTATATATATCCCCTCG 58.258 47.826 0.00 0.00 0.00 4.63
37 38 5.716979 TGAGGTGCCTATATATATCCCCTC 58.283 45.833 14.82 14.82 37.16 4.30
38 39 5.768454 TGAGGTGCCTATATATATCCCCT 57.232 43.478 0.00 0.00 0.00 4.79
39 40 6.240002 CCAATGAGGTGCCTATATATATCCCC 60.240 46.154 0.00 0.00 0.00 4.81
40 41 6.773638 CCAATGAGGTGCCTATATATATCCC 58.226 44.000 0.00 0.00 0.00 3.85
56 57 0.909623 ACTAACCGGGACCAATGAGG 59.090 55.000 6.32 0.00 45.67 3.86
57 58 1.406887 CCACTAACCGGGACCAATGAG 60.407 57.143 6.32 0.00 0.00 2.90
58 59 0.616371 CCACTAACCGGGACCAATGA 59.384 55.000 6.32 0.00 0.00 2.57
59 60 1.029947 GCCACTAACCGGGACCAATG 61.030 60.000 6.32 0.00 0.00 2.82
60 61 1.301954 GCCACTAACCGGGACCAAT 59.698 57.895 6.32 0.00 0.00 3.16
61 62 1.493854 ATGCCACTAACCGGGACCAA 61.494 55.000 6.32 0.00 0.00 3.67
62 63 1.921346 ATGCCACTAACCGGGACCA 60.921 57.895 6.32 0.00 0.00 4.02
63 64 1.451387 CATGCCACTAACCGGGACC 60.451 63.158 6.32 0.00 0.00 4.46
64 65 0.035820 TTCATGCCACTAACCGGGAC 60.036 55.000 6.32 0.00 0.00 4.46
65 66 0.035820 GTTCATGCCACTAACCGGGA 60.036 55.000 6.32 0.00 0.00 5.14
66 67 1.029947 GGTTCATGCCACTAACCGGG 61.030 60.000 6.32 0.00 33.85 5.73
67 68 2.477880 GGTTCATGCCACTAACCGG 58.522 57.895 0.00 0.00 33.85 5.28
69 70 1.029947 CCCGGTTCATGCCACTAACC 61.030 60.000 0.00 3.67 39.44 2.85
70 71 0.035820 TCCCGGTTCATGCCACTAAC 60.036 55.000 0.00 0.00 0.00 2.34
71 72 0.035820 GTCCCGGTTCATGCCACTAA 60.036 55.000 0.00 0.00 0.00 2.24
72 73 0.907704 AGTCCCGGTTCATGCCACTA 60.908 55.000 0.00 0.00 0.00 2.74
73 74 0.907704 TAGTCCCGGTTCATGCCACT 60.908 55.000 0.00 0.00 0.00 4.00
74 75 0.035820 TTAGTCCCGGTTCATGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
75 76 0.693622 TTTAGTCCCGGTTCATGCCA 59.306 50.000 0.00 0.00 0.00 4.92
76 77 1.379527 CTTTAGTCCCGGTTCATGCC 58.620 55.000 0.00 0.00 0.00 4.40
77 78 1.379527 CCTTTAGTCCCGGTTCATGC 58.620 55.000 0.00 0.00 0.00 4.06
78 79 1.408266 CCCCTTTAGTCCCGGTTCATG 60.408 57.143 0.00 0.00 0.00 3.07
79 80 0.916809 CCCCTTTAGTCCCGGTTCAT 59.083 55.000 0.00 0.00 0.00 2.57
80 81 0.178897 TCCCCTTTAGTCCCGGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
81 82 0.540454 CTCCCCTTTAGTCCCGGTTC 59.460 60.000 0.00 0.00 0.00 3.62
82 83 1.559965 GCTCCCCTTTAGTCCCGGTT 61.560 60.000 0.00 0.00 0.00 4.44
83 84 1.993948 GCTCCCCTTTAGTCCCGGT 60.994 63.158 0.00 0.00 0.00 5.28
84 85 2.743179 GGCTCCCCTTTAGTCCCGG 61.743 68.421 0.00 0.00 0.00 5.73
85 86 1.689582 AGGCTCCCCTTTAGTCCCG 60.690 63.158 0.00 0.00 38.74 5.14
86 87 4.502106 AGGCTCCCCTTTAGTCCC 57.498 61.111 0.00 0.00 38.74 4.46
94 95 2.941583 GGGACCAAAGGCTCCCCT 60.942 66.667 10.73 0.00 45.77 4.79
95 96 4.426313 CGGGACCAAAGGCTCCCC 62.426 72.222 14.21 7.91 38.76 4.81
96 97 4.426313 CCGGGACCAAAGGCTCCC 62.426 72.222 11.44 11.44 38.67 4.30
97 98 3.205851 AACCGGGACCAAAGGCTCC 62.206 63.158 6.32 0.00 0.00 4.70
98 99 1.674651 GAACCGGGACCAAAGGCTC 60.675 63.158 6.32 0.00 0.00 4.70
99 100 2.002018 TTGAACCGGGACCAAAGGCT 62.002 55.000 6.32 0.00 0.00 4.58
100 101 1.524008 CTTGAACCGGGACCAAAGGC 61.524 60.000 6.32 0.00 0.00 4.35
101 102 1.524008 GCTTGAACCGGGACCAAAGG 61.524 60.000 6.32 0.00 0.00 3.11
102 103 1.524008 GGCTTGAACCGGGACCAAAG 61.524 60.000 6.32 3.29 0.00 2.77
103 104 1.529713 GGCTTGAACCGGGACCAAA 60.530 57.895 6.32 0.00 0.00 3.28
104 105 2.114411 GGCTTGAACCGGGACCAA 59.886 61.111 6.32 5.81 0.00 3.67
105 106 3.172106 TGGCTTGAACCGGGACCA 61.172 61.111 6.32 0.26 0.00 4.02
106 107 2.671963 GTGGCTTGAACCGGGACC 60.672 66.667 6.32 0.00 0.00 4.46
107 108 2.671963 GGTGGCTTGAACCGGGAC 60.672 66.667 6.32 0.00 0.00 4.46
108 109 2.758207 TTGGTGGCTTGAACCGGGA 61.758 57.895 6.32 0.00 40.86 5.14
109 110 2.203422 TTGGTGGCTTGAACCGGG 60.203 61.111 6.32 0.00 40.86 5.73
110 111 2.561037 GGTTGGTGGCTTGAACCGG 61.561 63.158 0.00 0.00 40.86 5.28
111 112 3.039134 GGTTGGTGGCTTGAACCG 58.961 61.111 0.00 0.00 40.86 4.44
112 113 2.561037 CCGGTTGGTGGCTTGAACC 61.561 63.158 0.00 0.00 38.26 3.62
113 114 2.561037 CCCGGTTGGTGGCTTGAAC 61.561 63.158 0.00 0.00 0.00 3.18
114 115 2.203422 CCCGGTTGGTGGCTTGAA 60.203 61.111 0.00 0.00 0.00 2.69
115 116 3.172106 TCCCGGTTGGTGGCTTGA 61.172 61.111 0.00 0.00 34.77 3.02
116 117 2.983592 GTCCCGGTTGGTGGCTTG 60.984 66.667 0.00 0.00 34.77 4.01
117 118 4.280019 GGTCCCGGTTGGTGGCTT 62.280 66.667 0.00 0.00 34.77 4.35
119 120 3.879180 ATTGGTCCCGGTTGGTGGC 62.879 63.158 0.00 0.00 34.77 5.01
120 121 1.976474 CATTGGTCCCGGTTGGTGG 60.976 63.158 0.00 0.00 34.77 4.61
121 122 1.976474 CCATTGGTCCCGGTTGGTG 60.976 63.158 0.00 0.00 34.77 4.17
122 123 2.438795 CCATTGGTCCCGGTTGGT 59.561 61.111 0.00 0.00 34.77 3.67
123 124 1.976474 CACCATTGGTCCCGGTTGG 60.976 63.158 5.04 0.00 31.02 3.77
124 125 1.976474 CCACCATTGGTCCCGGTTG 60.976 63.158 5.04 0.00 38.23 3.77
125 126 2.438795 CCACCATTGGTCCCGGTT 59.561 61.111 5.04 0.00 38.23 4.44
134 135 2.519119 ATCCTGGCCCACCACCATTG 62.519 60.000 0.00 0.00 42.67 2.82
135 136 0.923729 TATCCTGGCCCACCACCATT 60.924 55.000 0.00 0.00 42.67 3.16
136 137 1.308657 TATCCTGGCCCACCACCAT 60.309 57.895 0.00 0.00 42.67 3.55
137 138 2.000701 CTATCCTGGCCCACCACCA 61.001 63.158 0.00 0.00 42.67 4.17
138 139 1.571773 AACTATCCTGGCCCACCACC 61.572 60.000 0.00 0.00 42.67 4.61
139 140 0.394352 CAACTATCCTGGCCCACCAC 60.394 60.000 0.00 0.00 42.67 4.16
140 141 1.570857 CCAACTATCCTGGCCCACCA 61.571 60.000 0.00 0.00 46.51 4.17
141 142 1.227383 CCAACTATCCTGGCCCACC 59.773 63.158 0.00 0.00 0.00 4.61
142 143 4.986467 CCAACTATCCTGGCCCAC 57.014 61.111 0.00 0.00 0.00 4.61
147 148 3.618690 GCCTATAGCCAACTATCCTGG 57.381 52.381 0.00 0.00 39.81 4.45
480 502 1.818060 CCGGAATTGAAATCAGTGGCA 59.182 47.619 0.00 0.00 0.00 4.92
484 506 1.474330 GGCCCGGAATTGAAATCAGT 58.526 50.000 0.73 0.00 0.00 3.41
592 616 4.328440 CGGAGTGATGATCAAACTTCAGTC 59.672 45.833 17.91 17.91 40.49 3.51
952 1020 5.186409 CCTCAACATCAAATGAACCATTCCT 59.814 40.000 0.00 0.00 32.43 3.36
1233 1355 5.324832 TCCCATCCAATAATTTCTCCTCC 57.675 43.478 0.00 0.00 0.00 4.30
1281 1403 5.351465 TCTTCTAACATTCCTCGATGCAAAC 59.649 40.000 0.00 0.00 0.00 2.93
1456 1585 2.432444 GGGCAAACTAAAAATTGGGGC 58.568 47.619 0.00 0.00 0.00 5.80
1510 1639 1.228063 ACTGTCCAGCTGCAGGTTG 60.228 57.895 17.45 13.69 37.07 3.77
1514 1643 1.575576 GCTTGACTGTCCAGCTGCAG 61.576 60.000 22.44 16.94 38.58 4.41
1515 1644 1.598962 GCTTGACTGTCCAGCTGCA 60.599 57.895 22.44 0.31 0.00 4.41
1516 1645 0.959372 ATGCTTGACTGTCCAGCTGC 60.959 55.000 27.48 14.83 0.00 5.25
1517 1646 0.803117 CATGCTTGACTGTCCAGCTG 59.197 55.000 27.48 20.28 0.00 4.24
1518 1647 0.322277 CCATGCTTGACTGTCCAGCT 60.322 55.000 27.48 14.68 0.00 4.24
1519 1648 0.607489 ACCATGCTTGACTGTCCAGC 60.607 55.000 22.81 22.81 0.00 4.85
1520 1649 1.446907 GACCATGCTTGACTGTCCAG 58.553 55.000 5.17 4.87 0.00 3.86
1521 1650 0.320683 CGACCATGCTTGACTGTCCA 60.321 55.000 5.17 0.00 0.00 4.02
1522 1651 0.320771 ACGACCATGCTTGACTGTCC 60.321 55.000 5.17 0.00 0.00 4.02
1523 1652 1.512926 AACGACCATGCTTGACTGTC 58.487 50.000 0.00 0.00 0.00 3.51
1524 1653 1.967319 AAACGACCATGCTTGACTGT 58.033 45.000 0.22 0.00 0.00 3.55
1525 1654 4.685169 ATAAAACGACCATGCTTGACTG 57.315 40.909 0.22 0.00 0.00 3.51
1526 1655 5.705609 AAATAAAACGACCATGCTTGACT 57.294 34.783 0.22 0.00 0.00 3.41
1527 1656 6.375377 TGTAAATAAAACGACCATGCTTGAC 58.625 36.000 0.22 0.00 0.00 3.18
1528 1657 6.205853 ACTGTAAATAAAACGACCATGCTTGA 59.794 34.615 0.22 0.00 0.00 3.02
1529 1658 6.378582 ACTGTAAATAAAACGACCATGCTTG 58.621 36.000 0.00 0.00 0.00 4.01
1530 1659 6.569179 ACTGTAAATAAAACGACCATGCTT 57.431 33.333 0.00 0.00 0.00 3.91
1531 1660 6.569179 AACTGTAAATAAAACGACCATGCT 57.431 33.333 0.00 0.00 0.00 3.79
1532 1661 6.399564 GCAAACTGTAAATAAAACGACCATGC 60.400 38.462 0.00 0.00 0.00 4.06
1533 1662 6.183359 CGCAAACTGTAAATAAAACGACCATG 60.183 38.462 0.00 0.00 0.00 3.66
1534 1663 5.854338 CGCAAACTGTAAATAAAACGACCAT 59.146 36.000 0.00 0.00 0.00 3.55
1535 1664 5.206299 CGCAAACTGTAAATAAAACGACCA 58.794 37.500 0.00 0.00 0.00 4.02
1536 1665 5.207033 ACGCAAACTGTAAATAAAACGACC 58.793 37.500 0.00 0.00 0.00 4.79
1537 1666 6.517374 CCTACGCAAACTGTAAATAAAACGAC 59.483 38.462 0.00 0.00 0.00 4.34
1538 1667 6.202570 ACCTACGCAAACTGTAAATAAAACGA 59.797 34.615 0.00 0.00 0.00 3.85
1539 1668 6.365050 ACCTACGCAAACTGTAAATAAAACG 58.635 36.000 0.00 0.00 0.00 3.60
1540 1669 7.578852 AGACCTACGCAAACTGTAAATAAAAC 58.421 34.615 0.00 0.00 0.00 2.43
1541 1670 7.733402 AGACCTACGCAAACTGTAAATAAAA 57.267 32.000 0.00 0.00 0.00 1.52
1542 1671 7.733402 AAGACCTACGCAAACTGTAAATAAA 57.267 32.000 0.00 0.00 0.00 1.40
1543 1672 8.090214 ACTAAGACCTACGCAAACTGTAAATAA 58.910 33.333 0.00 0.00 0.00 1.40
1544 1673 7.605449 ACTAAGACCTACGCAAACTGTAAATA 58.395 34.615 0.00 0.00 0.00 1.40
1545 1674 6.461640 ACTAAGACCTACGCAAACTGTAAAT 58.538 36.000 0.00 0.00 0.00 1.40
1546 1675 5.846203 ACTAAGACCTACGCAAACTGTAAA 58.154 37.500 0.00 0.00 0.00 2.01
1547 1676 5.458041 ACTAAGACCTACGCAAACTGTAA 57.542 39.130 0.00 0.00 0.00 2.41
1548 1677 5.009911 TCAACTAAGACCTACGCAAACTGTA 59.990 40.000 0.00 0.00 0.00 2.74
1549 1678 4.056050 CAACTAAGACCTACGCAAACTGT 58.944 43.478 0.00 0.00 0.00 3.55
1550 1679 4.150098 GTCAACTAAGACCTACGCAAACTG 59.850 45.833 0.00 0.00 32.36 3.16
1551 1680 4.038883 AGTCAACTAAGACCTACGCAAACT 59.961 41.667 0.00 0.00 39.34 2.66
1552 1681 4.150098 CAGTCAACTAAGACCTACGCAAAC 59.850 45.833 0.00 0.00 39.34 2.93
1553 1682 4.038282 TCAGTCAACTAAGACCTACGCAAA 59.962 41.667 0.00 0.00 39.34 3.68
1554 1683 3.570975 TCAGTCAACTAAGACCTACGCAA 59.429 43.478 0.00 0.00 39.34 4.85
1555 1684 3.151554 TCAGTCAACTAAGACCTACGCA 58.848 45.455 0.00 0.00 39.34 5.24
1556 1685 3.439476 TCTCAGTCAACTAAGACCTACGC 59.561 47.826 0.00 0.00 39.34 4.42
1557 1686 4.696402 AGTCTCAGTCAACTAAGACCTACG 59.304 45.833 9.40 0.00 41.23 3.51
1558 1687 6.578163 AAGTCTCAGTCAACTAAGACCTAC 57.422 41.667 9.40 0.00 41.23 3.18
1559 1688 8.880991 ATTAAGTCTCAGTCAACTAAGACCTA 57.119 34.615 9.40 0.00 41.23 3.08
1560 1689 7.451877 TGATTAAGTCTCAGTCAACTAAGACCT 59.548 37.037 9.40 0.56 41.23 3.85
1561 1690 7.603651 TGATTAAGTCTCAGTCAACTAAGACC 58.396 38.462 9.40 0.00 41.23 3.85
1562 1691 9.134734 CTTGATTAAGTCTCAGTCAACTAAGAC 57.865 37.037 5.45 5.45 40.74 3.01
1563 1692 8.861086 ACTTGATTAAGTCTCAGTCAACTAAGA 58.139 33.333 0.00 0.00 43.53 2.10
1582 1711 9.512588 ACTTTATCACTTGATTGAGACTTGATT 57.487 29.630 0.00 0.00 36.05 2.57
1643 1772 6.964908 TCTTGCATGAAGATTCGTACAAAAA 58.035 32.000 0.00 0.00 35.64 1.94
1644 1773 6.552859 TCTTGCATGAAGATTCGTACAAAA 57.447 33.333 0.00 0.00 35.64 2.44
1660 1789 9.999009 CGATGCTATATTCATTTAATCTTGCAT 57.001 29.630 0.00 0.00 41.93 3.96
1661 1790 9.218440 TCGATGCTATATTCATTTAATCTTGCA 57.782 29.630 0.00 0.00 37.04 4.08
1662 1791 9.483062 GTCGATGCTATATTCATTTAATCTTGC 57.517 33.333 0.00 0.00 0.00 4.01
1663 1792 9.979270 GGTCGATGCTATATTCATTTAATCTTG 57.021 33.333 0.00 0.00 0.00 3.02
1664 1793 8.873830 CGGTCGATGCTATATTCATTTAATCTT 58.126 33.333 0.00 0.00 0.00 2.40
1665 1794 8.251026 TCGGTCGATGCTATATTCATTTAATCT 58.749 33.333 0.00 0.00 0.00 2.40
1666 1795 8.407457 TCGGTCGATGCTATATTCATTTAATC 57.593 34.615 0.00 0.00 0.00 1.75
1667 1796 8.251026 TCTCGGTCGATGCTATATTCATTTAAT 58.749 33.333 0.00 0.00 0.00 1.40
1668 1797 7.541091 GTCTCGGTCGATGCTATATTCATTTAA 59.459 37.037 0.00 0.00 0.00 1.52
1669 1798 7.027760 GTCTCGGTCGATGCTATATTCATTTA 58.972 38.462 0.00 0.00 0.00 1.40
1670 1799 5.864474 GTCTCGGTCGATGCTATATTCATTT 59.136 40.000 0.00 0.00 0.00 2.32
1671 1800 5.184096 AGTCTCGGTCGATGCTATATTCATT 59.816 40.000 0.00 0.00 0.00 2.57
1672 1801 4.702612 AGTCTCGGTCGATGCTATATTCAT 59.297 41.667 0.00 0.00 0.00 2.57
1673 1802 4.072839 AGTCTCGGTCGATGCTATATTCA 58.927 43.478 0.00 0.00 0.00 2.57
1674 1803 4.393680 AGAGTCTCGGTCGATGCTATATTC 59.606 45.833 0.00 0.00 0.00 1.75
1675 1804 4.328536 AGAGTCTCGGTCGATGCTATATT 58.671 43.478 0.00 0.00 0.00 1.28
1676 1805 3.945346 AGAGTCTCGGTCGATGCTATAT 58.055 45.455 0.00 0.00 0.00 0.86
1677 1806 3.404224 AGAGTCTCGGTCGATGCTATA 57.596 47.619 0.00 0.00 0.00 1.31
1678 1807 2.264005 AGAGTCTCGGTCGATGCTAT 57.736 50.000 0.00 0.00 0.00 2.97
1679 1808 2.102757 AGTAGAGTCTCGGTCGATGCTA 59.897 50.000 0.00 0.00 0.00 3.49
1680 1809 1.134340 AGTAGAGTCTCGGTCGATGCT 60.134 52.381 0.00 0.00 0.00 3.79
1681 1810 1.003331 CAGTAGAGTCTCGGTCGATGC 60.003 57.143 0.00 0.00 0.00 3.91
1682 1811 2.552031 TCAGTAGAGTCTCGGTCGATG 58.448 52.381 0.00 0.00 0.00 3.84
1683 1812 2.983907 TCAGTAGAGTCTCGGTCGAT 57.016 50.000 0.00 0.00 0.00 3.59
1684 1813 2.740981 GTTTCAGTAGAGTCTCGGTCGA 59.259 50.000 0.00 0.00 0.00 4.20
1685 1814 2.743126 AGTTTCAGTAGAGTCTCGGTCG 59.257 50.000 0.00 0.00 0.00 4.79
1686 1815 4.769859 AAGTTTCAGTAGAGTCTCGGTC 57.230 45.455 0.00 0.00 0.00 4.79
1687 1816 4.156373 GCTAAGTTTCAGTAGAGTCTCGGT 59.844 45.833 0.00 0.00 0.00 4.69
1688 1817 4.156190 TGCTAAGTTTCAGTAGAGTCTCGG 59.844 45.833 0.00 0.00 0.00 4.63
1689 1818 5.298197 TGCTAAGTTTCAGTAGAGTCTCG 57.702 43.478 0.00 0.00 0.00 4.04
1690 1819 7.654116 AGTTTTGCTAAGTTTCAGTAGAGTCTC 59.346 37.037 0.00 0.00 0.00 3.36
1691 1820 7.439655 CAGTTTTGCTAAGTTTCAGTAGAGTCT 59.560 37.037 0.00 0.00 0.00 3.24
1692 1821 7.224949 ACAGTTTTGCTAAGTTTCAGTAGAGTC 59.775 37.037 0.00 0.00 0.00 3.36
1693 1822 7.048512 ACAGTTTTGCTAAGTTTCAGTAGAGT 58.951 34.615 0.00 0.00 0.00 3.24
1694 1823 7.484035 ACAGTTTTGCTAAGTTTCAGTAGAG 57.516 36.000 0.00 0.00 0.00 2.43
1695 1824 7.859325 AACAGTTTTGCTAAGTTTCAGTAGA 57.141 32.000 0.00 0.00 0.00 2.59
1696 1825 8.827677 ACTAACAGTTTTGCTAAGTTTCAGTAG 58.172 33.333 0.00 0.00 0.00 2.57
1697 1826 8.726870 ACTAACAGTTTTGCTAAGTTTCAGTA 57.273 30.769 0.00 0.00 0.00 2.74
1698 1827 7.625828 ACTAACAGTTTTGCTAAGTTTCAGT 57.374 32.000 0.00 0.00 0.00 3.41
1699 1828 8.911247 AAACTAACAGTTTTGCTAAGTTTCAG 57.089 30.769 4.44 0.00 45.38 3.02
1713 1842 5.699097 ACACACACACAAAACTAACAGTT 57.301 34.783 0.00 0.00 40.80 3.16
1714 1843 5.163933 CGTACACACACACAAAACTAACAGT 60.164 40.000 0.00 0.00 0.00 3.55
1715 1844 5.252583 CGTACACACACACAAAACTAACAG 58.747 41.667 0.00 0.00 0.00 3.16
1716 1845 4.435784 GCGTACACACACACAAAACTAACA 60.436 41.667 0.00 0.00 0.00 2.41
1717 1846 4.023783 GCGTACACACACACAAAACTAAC 58.976 43.478 0.00 0.00 0.00 2.34
1718 1847 3.683340 TGCGTACACACACACAAAACTAA 59.317 39.130 0.00 0.00 0.00 2.24
1719 1848 3.259902 TGCGTACACACACACAAAACTA 58.740 40.909 0.00 0.00 0.00 2.24
1720 1849 2.077627 TGCGTACACACACACAAAACT 58.922 42.857 0.00 0.00 0.00 2.66
1721 1850 2.529136 TGCGTACACACACACAAAAC 57.471 45.000 0.00 0.00 0.00 2.43
1722 1851 2.223363 CCATGCGTACACACACACAAAA 60.223 45.455 0.00 0.00 0.00 2.44
1723 1852 1.332065 CCATGCGTACACACACACAAA 59.668 47.619 0.00 0.00 0.00 2.83
1724 1853 0.940833 CCATGCGTACACACACACAA 59.059 50.000 0.00 0.00 0.00 3.33
1725 1854 0.105039 TCCATGCGTACACACACACA 59.895 50.000 0.00 0.00 0.00 3.72
1726 1855 0.790207 CTCCATGCGTACACACACAC 59.210 55.000 0.00 0.00 0.00 3.82
1727 1856 0.391228 ACTCCATGCGTACACACACA 59.609 50.000 0.00 0.00 0.00 3.72
1728 1857 1.508632 AACTCCATGCGTACACACAC 58.491 50.000 0.00 0.00 0.00 3.82
1729 1858 2.139917 GAAACTCCATGCGTACACACA 58.860 47.619 0.00 0.00 0.00 3.72
1730 1859 2.139917 TGAAACTCCATGCGTACACAC 58.860 47.619 0.00 0.00 0.00 3.82
1731 1860 2.412870 CTGAAACTCCATGCGTACACA 58.587 47.619 0.00 0.00 0.00 3.72
1732 1861 1.732259 CCTGAAACTCCATGCGTACAC 59.268 52.381 0.00 0.00 0.00 2.90
1733 1862 1.943968 GCCTGAAACTCCATGCGTACA 60.944 52.381 0.00 0.00 0.00 2.90
1734 1863 0.727398 GCCTGAAACTCCATGCGTAC 59.273 55.000 0.00 0.00 0.00 3.67
1735 1864 0.739462 CGCCTGAAACTCCATGCGTA 60.739 55.000 0.00 0.00 43.05 4.42
1736 1865 2.034879 CGCCTGAAACTCCATGCGT 61.035 57.895 0.00 0.00 43.05 5.24
1737 1866 2.787249 CGCCTGAAACTCCATGCG 59.213 61.111 0.00 0.00 42.63 4.73
1738 1867 0.598065 AAACGCCTGAAACTCCATGC 59.402 50.000 0.00 0.00 0.00 4.06
1739 1868 2.607771 CCAAAACGCCTGAAACTCCATG 60.608 50.000 0.00 0.00 0.00 3.66
1740 1869 1.613437 CCAAAACGCCTGAAACTCCAT 59.387 47.619 0.00 0.00 0.00 3.41
1741 1870 1.028905 CCAAAACGCCTGAAACTCCA 58.971 50.000 0.00 0.00 0.00 3.86
1742 1871 0.313987 CCCAAAACGCCTGAAACTCC 59.686 55.000 0.00 0.00 0.00 3.85
1743 1872 1.314730 TCCCAAAACGCCTGAAACTC 58.685 50.000 0.00 0.00 0.00 3.01
1744 1873 1.407618 GTTCCCAAAACGCCTGAAACT 59.592 47.619 0.00 0.00 0.00 2.66
1745 1874 1.537348 GGTTCCCAAAACGCCTGAAAC 60.537 52.381 0.00 0.00 0.00 2.78
1746 1875 0.747852 GGTTCCCAAAACGCCTGAAA 59.252 50.000 0.00 0.00 0.00 2.69
1747 1876 0.106419 AGGTTCCCAAAACGCCTGAA 60.106 50.000 0.00 0.00 0.00 3.02
1748 1877 0.106419 AAGGTTCCCAAAACGCCTGA 60.106 50.000 0.00 0.00 0.00 3.86
1749 1878 0.031994 CAAGGTTCCCAAAACGCCTG 59.968 55.000 0.00 0.00 0.00 4.85
1750 1879 0.396556 ACAAGGTTCCCAAAACGCCT 60.397 50.000 0.00 0.00 0.00 5.52
1751 1880 0.031585 GACAAGGTTCCCAAAACGCC 59.968 55.000 0.00 0.00 0.00 5.68
1752 1881 0.741915 TGACAAGGTTCCCAAAACGC 59.258 50.000 0.00 0.00 0.00 4.84
1753 1882 3.726291 AATGACAAGGTTCCCAAAACG 57.274 42.857 0.00 0.00 0.00 3.60
1754 1883 6.993079 AGAATAATGACAAGGTTCCCAAAAC 58.007 36.000 0.00 0.00 0.00 2.43
1755 1884 6.072175 CGAGAATAATGACAAGGTTCCCAAAA 60.072 38.462 0.00 0.00 0.00 2.44
1756 1885 5.414454 CGAGAATAATGACAAGGTTCCCAAA 59.586 40.000 0.00 0.00 0.00 3.28
1757 1886 4.941263 CGAGAATAATGACAAGGTTCCCAA 59.059 41.667 0.00 0.00 0.00 4.12
1758 1887 4.224147 TCGAGAATAATGACAAGGTTCCCA 59.776 41.667 0.00 0.00 0.00 4.37
1759 1888 4.766375 TCGAGAATAATGACAAGGTTCCC 58.234 43.478 0.00 0.00 0.00 3.97
1760 1889 5.661458 TCTCGAGAATAATGACAAGGTTCC 58.339 41.667 14.01 0.00 0.00 3.62
1761 1890 7.778470 AATCTCGAGAATAATGACAAGGTTC 57.222 36.000 20.91 0.00 0.00 3.62
1762 1891 8.567285 AAAATCTCGAGAATAATGACAAGGTT 57.433 30.769 20.91 0.94 0.00 3.50
1763 1892 7.281100 GGAAAATCTCGAGAATAATGACAAGGT 59.719 37.037 20.91 0.00 0.00 3.50
1764 1893 7.254932 GGGAAAATCTCGAGAATAATGACAAGG 60.255 40.741 20.91 0.00 0.00 3.61
1765 1894 7.280876 TGGGAAAATCTCGAGAATAATGACAAG 59.719 37.037 20.91 0.00 0.00 3.16
1766 1895 7.109501 TGGGAAAATCTCGAGAATAATGACAA 58.890 34.615 20.91 0.00 0.00 3.18
1767 1896 6.649155 TGGGAAAATCTCGAGAATAATGACA 58.351 36.000 20.91 10.62 0.00 3.58
1768 1897 7.281100 ACTTGGGAAAATCTCGAGAATAATGAC 59.719 37.037 20.91 8.13 31.94 3.06
1769 1898 7.280876 CACTTGGGAAAATCTCGAGAATAATGA 59.719 37.037 20.91 0.00 31.94 2.57
1770 1899 7.066284 ACACTTGGGAAAATCTCGAGAATAATG 59.934 37.037 20.91 9.21 31.94 1.90
1771 1900 7.112779 ACACTTGGGAAAATCTCGAGAATAAT 58.887 34.615 20.91 6.15 31.94 1.28
1772 1901 6.472887 ACACTTGGGAAAATCTCGAGAATAA 58.527 36.000 20.91 0.69 31.94 1.40
1773 1902 6.049955 ACACTTGGGAAAATCTCGAGAATA 57.950 37.500 20.91 0.00 31.94 1.75
1774 1903 4.911390 ACACTTGGGAAAATCTCGAGAAT 58.089 39.130 20.91 8.52 31.94 2.40
1775 1904 4.351874 ACACTTGGGAAAATCTCGAGAA 57.648 40.909 20.91 2.87 31.94 2.87
1776 1905 4.351874 AACACTTGGGAAAATCTCGAGA 57.648 40.909 19.19 19.19 31.94 4.04
1777 1906 5.438761 AAAACACTTGGGAAAATCTCGAG 57.561 39.130 5.93 5.93 34.44 4.04
1778 1907 5.845391 AAAAACACTTGGGAAAATCTCGA 57.155 34.783 0.00 0.00 0.00 4.04
1812 1941 1.750193 ACCAATTCGACGGAATGCAT 58.250 45.000 0.00 0.00 41.99 3.96
1821 1950 6.910536 AGAAGATTGACATACCAATTCGAC 57.089 37.500 0.00 0.00 36.93 4.20
1824 1953 8.946085 TGTACAAGAAGATTGACATACCAATTC 58.054 33.333 0.00 0.00 36.93 2.17
1831 1960 9.647797 ACGTTTATGTACAAGAAGATTGACATA 57.352 29.630 0.00 2.77 0.00 2.29
1839 1968 8.301720 ACTGTATCACGTTTATGTACAAGAAGA 58.698 33.333 0.00 0.00 0.00 2.87
1847 1976 4.871557 GCCCAACTGTATCACGTTTATGTA 59.128 41.667 0.00 0.00 0.00 2.29
1848 1977 3.687698 GCCCAACTGTATCACGTTTATGT 59.312 43.478 0.00 0.00 0.00 2.29
1850 1979 2.933906 CGCCCAACTGTATCACGTTTAT 59.066 45.455 0.00 0.00 0.00 1.40
1869 2000 1.724582 CCCCCATTGAATCGAACCGC 61.725 60.000 0.00 0.00 0.00 5.68
1892 2023 1.339151 GGACAGGTCCACCTTCATGTC 60.339 57.143 13.49 1.59 46.09 3.06
1955 2092 2.970024 ATATGGGCTATGGCTAGGGA 57.030 50.000 0.00 0.00 38.73 4.20
1975 2112 3.391774 AGATGGGAGACTGGATGAACAT 58.608 45.455 0.00 0.00 0.00 2.71
2057 2195 6.207417 CCCTTCTCTGTGCTAGAATTCAAAAA 59.793 38.462 8.44 0.00 34.32 1.94
2070 2208 0.250901 TTGCCTTCCCTTCTCTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
2075 2213 2.095461 GATTGGTTGCCTTCCCTTCTC 58.905 52.381 0.00 0.00 0.00 2.87
2133 2354 5.998363 GGTTCCCTCCATCAATCTGTATAAC 59.002 44.000 0.00 0.00 0.00 1.89
2141 2362 3.225940 GGATTGGTTCCCTCCATCAATC 58.774 50.000 0.00 0.00 41.47 2.67
2208 2497 9.315525 CTCAGCTAGCAGTATATAGTAATCGTA 57.684 37.037 18.83 0.00 0.00 3.43
2274 2564 9.273016 TCTGACCTTAGATTTCTAGTGTTTTTG 57.727 33.333 0.00 0.00 0.00 2.44
2275 2565 9.847224 TTCTGACCTTAGATTTCTAGTGTTTTT 57.153 29.630 0.00 0.00 0.00 1.94
2283 2573 9.614792 GCCTAAAATTCTGACCTTAGATTTCTA 57.385 33.333 0.00 0.00 0.00 2.10
2284 2574 7.281100 CGCCTAAAATTCTGACCTTAGATTTCT 59.719 37.037 0.00 0.00 0.00 2.52
2285 2575 7.065923 ACGCCTAAAATTCTGACCTTAGATTTC 59.934 37.037 0.00 0.00 0.00 2.17
2286 2576 6.884836 ACGCCTAAAATTCTGACCTTAGATTT 59.115 34.615 0.00 0.00 0.00 2.17
2287 2577 6.415573 ACGCCTAAAATTCTGACCTTAGATT 58.584 36.000 0.00 0.00 0.00 2.40
2288 2578 5.990668 ACGCCTAAAATTCTGACCTTAGAT 58.009 37.500 0.00 0.00 0.00 1.98
2289 2579 5.416271 ACGCCTAAAATTCTGACCTTAGA 57.584 39.130 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.