Multiple sequence alignment - TraesCS7A01G523900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G523900 chr7A 100.000 5353 0 0 1 5353 706400901 706395549 0.000000e+00 9886.0
1 TraesCS7A01G523900 chr7A 94.331 635 34 1 4721 5353 691728167 691728801 0.000000e+00 972.0
2 TraesCS7A01G523900 chr7A 98.601 429 6 0 1 429 55920428 55920856 0.000000e+00 760.0
3 TraesCS7A01G523900 chr7A 86.022 279 38 1 150 427 706400995 706401273 1.130000e-76 298.0
4 TraesCS7A01G523900 chr7A 93.407 91 5 1 3006 3095 696653269 696653359 3.360000e-27 134.0
5 TraesCS7A01G523900 chr7D 90.600 2649 135 48 444 3011 614353449 614350834 0.000000e+00 3408.0
6 TraesCS7A01G523900 chr7D 87.559 1495 99 34 3101 4557 614350818 614349373 0.000000e+00 1650.0
7 TraesCS7A01G523900 chr7D 85.874 269 36 2 150 417 9829521 9829254 8.770000e-73 285.0
8 TraesCS7A01G523900 chr7D 92.350 183 10 3 4549 4727 614349337 614349155 1.910000e-64 257.0
9 TraesCS7A01G523900 chr7D 85.849 212 28 2 182 392 9829729 9829939 1.940000e-54 224.0
10 TraesCS7A01G523900 chr7D 93.478 92 5 1 3005 3095 597090529 597090438 9.350000e-28 135.0
11 TraesCS7A01G523900 chr7B 90.877 2554 123 51 442 2918 706383291 706385811 0.000000e+00 3325.0
12 TraesCS7A01G523900 chr7B 91.850 957 53 17 3611 4555 706386037 706386980 0.000000e+00 1312.0
13 TraesCS7A01G523900 chr7B 97.959 441 7 2 1 441 539930777 539930339 0.000000e+00 763.0
14 TraesCS7A01G523900 chr7B 92.417 211 16 0 1535 1745 462813943 462813733 8.710000e-78 302.0
15 TraesCS7A01G523900 chr7B 85.663 279 39 1 150 427 539930871 539931149 5.240000e-75 292.0
16 TraesCS7A01G523900 chr7B 91.124 169 9 3 4568 4730 706387036 706387204 1.940000e-54 224.0
17 TraesCS7A01G523900 chr7B 93.706 143 9 0 1954 2096 16945189 16945047 1.170000e-51 215.0
18 TraesCS7A01G523900 chr7B 91.111 90 5 2 3264 3353 706385882 706385968 9.420000e-23 119.0
19 TraesCS7A01G523900 chr7B 93.182 44 3 0 3365 3408 706385966 706386009 1.240000e-06 65.8
20 TraesCS7A01G523900 chr6A 94.375 640 24 4 4726 5353 613149570 613150209 0.000000e+00 972.0
21 TraesCS7A01G523900 chr6A 94.375 640 24 2 4726 5353 613186879 613187518 0.000000e+00 972.0
22 TraesCS7A01G523900 chr6A 93.906 640 27 2 4726 5353 613232745 613233384 0.000000e+00 955.0
23 TraesCS7A01G523900 chr6A 87.640 445 29 11 2438 2857 34545801 34546244 1.340000e-135 494.0
24 TraesCS7A01G523900 chr6A 95.604 91 3 1 3006 3095 450094711 450094801 1.550000e-30 145.0
25 TraesCS7A01G523900 chr5A 93.935 643 26 3 4723 5353 120001160 120000519 0.000000e+00 959.0
26 TraesCS7A01G523900 chr5A 92.633 638 36 6 4724 5353 177625549 177626183 0.000000e+00 907.0
27 TraesCS7A01G523900 chr5A 89.241 316 34 0 1415 1730 325181172 325181487 3.890000e-106 396.0
28 TraesCS7A01G523900 chr5A 82.109 313 44 8 2575 2881 341874195 341874501 1.910000e-64 257.0
29 TraesCS7A01G523900 chr5A 93.407 91 5 1 3006 3095 46619654 46619744 3.360000e-27 134.0
30 TraesCS7A01G523900 chr2A 93.396 636 36 5 4722 5353 741416250 741416883 0.000000e+00 937.0
31 TraesCS7A01G523900 chr2A 93.157 643 30 7 4723 5353 144265326 144265966 0.000000e+00 931.0
32 TraesCS7A01G523900 chr2A 92.271 634 39 8 4722 5353 773547844 773548469 0.000000e+00 891.0
33 TraesCS7A01G523900 chr2A 88.189 127 13 2 4723 4847 233218126 233218000 3.340000e-32 150.0
34 TraesCS7A01G523900 chr2A 94.505 91 4 1 3006 3095 70936101 70936191 7.230000e-29 139.0
35 TraesCS7A01G523900 chr2A 94.595 37 1 1 3518 3553 97846955 97846919 7.490000e-04 56.5
36 TraesCS7A01G523900 chr3B 87.484 767 84 2 1106 1863 29245243 29246006 0.000000e+00 874.0
37 TraesCS7A01G523900 chr3B 86.538 156 15 5 4718 4867 726127128 726127283 3.320000e-37 167.0
38 TraesCS7A01G523900 chr3B 87.903 124 13 1 4726 4847 646068166 646068289 1.550000e-30 145.0
39 TraesCS7A01G523900 chr3B 87.500 120 15 0 1614 1733 130115730 130115849 7.230000e-29 139.0
40 TraesCS7A01G523900 chr6B 98.372 430 7 0 1 430 702810849 702810420 0.000000e+00 756.0
41 TraesCS7A01G523900 chr6B 85.305 279 40 1 150 427 702810943 702811221 2.440000e-73 287.0
42 TraesCS7A01G523900 chr6B 79.452 219 28 10 2477 2686 142814432 142814642 7.230000e-29 139.0
43 TraesCS7A01G523900 chr4B 97.273 440 10 2 1 438 149720581 149720142 0.000000e+00 745.0
44 TraesCS7A01G523900 chr4B 84.615 286 44 0 150 435 149720675 149720960 8.770000e-73 285.0
45 TraesCS7A01G523900 chr4B 90.404 198 19 0 1536 1733 665226606 665226803 1.480000e-65 261.0
46 TraesCS7A01G523900 chr4B 86.239 109 13 2 235 342 640982055 640982162 3.390000e-22 117.0
47 TraesCS7A01G523900 chr4B 82.353 119 18 3 271 387 640981573 640981456 3.410000e-17 100.0
48 TraesCS7A01G523900 chr4B 85.938 64 2 7 266 326 656641477 656641536 1.610000e-05 62.1
49 TraesCS7A01G523900 chr1A 97.887 426 9 0 1 426 562130174 562130599 0.000000e+00 737.0
50 TraesCS7A01G523900 chr1A 85.263 285 41 1 150 433 562130080 562129796 5.240000e-75 292.0
51 TraesCS7A01G523900 chr1A 83.478 115 19 0 249 363 515839024 515838910 2.040000e-19 108.0
52 TraesCS7A01G523900 chr4A 85.266 638 68 18 4726 5351 577226300 577225677 7.560000e-178 634.0
53 TraesCS7A01G523900 chr4A 80.952 315 24 9 3188 3502 645498082 645497804 3.250000e-52 217.0
54 TraesCS7A01G523900 chr5B 84.906 583 68 11 2375 2956 166164121 166163558 6.010000e-159 571.0
55 TraesCS7A01G523900 chr5B 84.906 583 67 12 2375 2956 165772784 165772222 2.160000e-158 569.0
56 TraesCS7A01G523900 chr5B 82.136 543 55 22 3141 3666 165766378 165765861 1.380000e-115 427.0
57 TraesCS7A01G523900 chr5B 81.952 543 56 23 3141 3666 166157991 166157474 6.410000e-114 422.0
58 TraesCS7A01G523900 chr5B 87.963 324 38 1 1410 1732 698003071 698003394 1.090000e-101 381.0
59 TraesCS7A01G523900 chr5B 81.150 313 47 8 2575 2881 291379403 291379709 1.930000e-59 241.0
60 TraesCS7A01G523900 chr5B 93.407 91 5 1 3006 3095 655407523 655407433 3.360000e-27 134.0
61 TraesCS7A01G523900 chr5B 76.923 195 41 4 234 426 78742189 78742381 2.040000e-19 108.0
62 TraesCS7A01G523900 chr5B 94.595 37 1 1 3518 3553 678673349 678673313 7.490000e-04 56.5
63 TraesCS7A01G523900 chr3D 89.759 332 31 3 1416 1745 31419047 31418717 6.410000e-114 422.0
64 TraesCS7A01G523900 chr3D 87.838 148 12 3 4722 4864 545425576 545425430 9.220000e-38 169.0
65 TraesCS7A01G523900 chr3D 95.699 93 3 1 3004 3095 55744974 55745066 1.200000e-31 148.0
66 TraesCS7A01G523900 chr3D 81.343 134 23 2 298 430 597160464 597160332 2.040000e-19 108.0
67 TraesCS7A01G523900 chrUn 85.440 364 33 13 3141 3502 479637641 479637986 1.420000e-95 361.0
68 TraesCS7A01G523900 chrUn 80.952 315 24 9 3188 3502 330993857 330993579 3.250000e-52 217.0
69 TraesCS7A01G523900 chr5D 81.470 313 46 8 2575 2881 257124247 257124553 4.140000e-61 246.0
70 TraesCS7A01G523900 chr5D 93.407 91 5 1 3006 3095 362403033 362402943 3.360000e-27 134.0
71 TraesCS7A01G523900 chr5D 92.391 92 6 1 3005 3095 420700217 420700308 4.350000e-26 130.0
72 TraesCS7A01G523900 chr5D 78.571 168 31 4 268 433 23119404 23119240 7.330000e-19 106.0
73 TraesCS7A01G523900 chr5D 77.778 180 34 4 253 429 23120082 23120258 7.330000e-19 106.0
74 TraesCS7A01G523900 chr5D 83.333 108 16 2 254 360 288077467 288077361 1.230000e-16 99.0
75 TraesCS7A01G523900 chr2D 86.175 217 27 3 150 364 483125747 483125962 1.160000e-56 231.0
76 TraesCS7A01G523900 chr2D 80.071 281 53 3 148 427 483080170 483079892 7.030000e-49 206.0
77 TraesCS7A01G523900 chr2D 95.000 80 4 0 1106 1185 389695376 389695455 5.630000e-25 126.0
78 TraesCS7A01G523900 chr4D 84.058 207 19 5 2792 2997 228833216 228833023 2.550000e-43 187.0
79 TraesCS7A01G523900 chr4D 80.357 168 28 5 266 431 409317277 409317113 7.280000e-24 122.0
80 TraesCS7A01G523900 chr4D 97.368 38 1 0 1108 1145 374779954 374779917 1.240000e-06 65.8
81 TraesCS7A01G523900 chr1B 93.805 113 3 2 1984 2093 553639318 553639429 3.320000e-37 167.0
82 TraesCS7A01G523900 chr1B 79.042 167 27 5 255 417 12325954 12326116 2.040000e-19 108.0
83 TraesCS7A01G523900 chr2B 89.431 123 13 0 1614 1736 105743403 105743525 7.180000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G523900 chr7A 706395549 706400901 5352 True 9886.000000 9886 100.000000 1 5353 1 chr7A.!!$R1 5352
1 TraesCS7A01G523900 chr7A 691728167 691728801 634 False 972.000000 972 94.331000 4721 5353 1 chr7A.!!$F2 632
2 TraesCS7A01G523900 chr7D 614349155 614353449 4294 True 1771.666667 3408 90.169667 444 4727 3 chr7D.!!$R3 4283
3 TraesCS7A01G523900 chr7B 706383291 706387204 3913 False 1009.160000 3325 91.628800 442 4730 5 chr7B.!!$F2 4288
4 TraesCS7A01G523900 chr6A 613149570 613150209 639 False 972.000000 972 94.375000 4726 5353 1 chr6A.!!$F3 627
5 TraesCS7A01G523900 chr6A 613186879 613187518 639 False 972.000000 972 94.375000 4726 5353 1 chr6A.!!$F4 627
6 TraesCS7A01G523900 chr6A 613232745 613233384 639 False 955.000000 955 93.906000 4726 5353 1 chr6A.!!$F5 627
7 TraesCS7A01G523900 chr5A 120000519 120001160 641 True 959.000000 959 93.935000 4723 5353 1 chr5A.!!$R1 630
8 TraesCS7A01G523900 chr5A 177625549 177626183 634 False 907.000000 907 92.633000 4724 5353 1 chr5A.!!$F2 629
9 TraesCS7A01G523900 chr2A 741416250 741416883 633 False 937.000000 937 93.396000 4722 5353 1 chr2A.!!$F3 631
10 TraesCS7A01G523900 chr2A 144265326 144265966 640 False 931.000000 931 93.157000 4723 5353 1 chr2A.!!$F2 630
11 TraesCS7A01G523900 chr2A 773547844 773548469 625 False 891.000000 891 92.271000 4722 5353 1 chr2A.!!$F4 631
12 TraesCS7A01G523900 chr3B 29245243 29246006 763 False 874.000000 874 87.484000 1106 1863 1 chr3B.!!$F1 757
13 TraesCS7A01G523900 chr4A 577225677 577226300 623 True 634.000000 634 85.266000 4726 5351 1 chr4A.!!$R1 625
14 TraesCS7A01G523900 chr5B 166163558 166164121 563 True 571.000000 571 84.906000 2375 2956 1 chr5B.!!$R4 581
15 TraesCS7A01G523900 chr5B 165772222 165772784 562 True 569.000000 569 84.906000 2375 2956 1 chr5B.!!$R2 581
16 TraesCS7A01G523900 chr5B 165765861 165766378 517 True 427.000000 427 82.136000 3141 3666 1 chr5B.!!$R1 525
17 TraesCS7A01G523900 chr5B 166157474 166157991 517 True 422.000000 422 81.952000 3141 3666 1 chr5B.!!$R3 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.035152 TTGCCCTGTGCTATGTGGAG 60.035 55.0 0.0 0.0 42.00 3.86 F
442 443 0.108138 AAATTCGTGCGAGAGAGGGG 60.108 55.0 0.0 0.0 0.00 4.79 F
938 1020 0.536006 CTTCCCTCGCCATTCCCATC 60.536 60.0 0.0 0.0 0.00 3.51 F
1089 1200 0.677731 TATTGCTGGTGCTGCTGGTC 60.678 55.0 0.0 0.0 40.48 4.02 F
2538 2670 1.027357 ACCACAGCAAGAACAAGCAG 58.973 50.0 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1953 0.031721 ACGACACGTTGAGGAACCTC 59.968 55.000 13.32 13.32 36.35 3.85 R
2348 2480 0.790814 CGTGGCCGTCTTTTCTTCTC 59.209 55.000 0.00 0.00 0.00 2.87 R
2841 2973 1.589196 GGCGTAGTCGTGGATGAGC 60.589 63.158 0.00 0.00 39.49 4.26 R
3024 3157 4.841443 TCAGCTGTCTAAACGACTTACA 57.159 40.909 14.67 0.00 43.25 2.41 R
4494 4698 0.458889 CAGTCAGAGCAGAGCAGAGC 60.459 60.000 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.785982 TCTCGTTGCCCTGTGCTA 58.214 55.556 0.00 0.00 42.00 3.49
18 19 2.286826 TCTCGTTGCCCTGTGCTAT 58.713 52.632 0.00 0.00 42.00 2.97
19 20 0.108186 TCTCGTTGCCCTGTGCTATG 60.108 55.000 0.00 0.00 42.00 2.23
20 21 0.391661 CTCGTTGCCCTGTGCTATGT 60.392 55.000 0.00 0.00 42.00 2.29
21 22 0.673333 TCGTTGCCCTGTGCTATGTG 60.673 55.000 0.00 0.00 42.00 3.21
22 23 1.647545 CGTTGCCCTGTGCTATGTGG 61.648 60.000 0.00 0.00 42.00 4.17
23 24 0.322456 GTTGCCCTGTGCTATGTGGA 60.322 55.000 0.00 0.00 42.00 4.02
24 25 0.035152 TTGCCCTGTGCTATGTGGAG 60.035 55.000 0.00 0.00 42.00 3.86
25 26 1.200760 TGCCCTGTGCTATGTGGAGT 61.201 55.000 0.00 0.00 42.00 3.85
26 27 0.462759 GCCCTGTGCTATGTGGAGTC 60.463 60.000 0.00 0.00 36.87 3.36
27 28 0.904649 CCCTGTGCTATGTGGAGTCA 59.095 55.000 0.00 0.00 0.00 3.41
28 29 1.487976 CCCTGTGCTATGTGGAGTCAT 59.512 52.381 0.00 0.00 0.00 3.06
29 30 2.484417 CCCTGTGCTATGTGGAGTCATC 60.484 54.545 0.00 0.00 0.00 2.92
30 31 2.433604 CCTGTGCTATGTGGAGTCATCT 59.566 50.000 0.00 0.00 0.00 2.90
31 32 3.455327 CTGTGCTATGTGGAGTCATCTG 58.545 50.000 0.00 0.00 0.00 2.90
32 33 2.169144 TGTGCTATGTGGAGTCATCTGG 59.831 50.000 0.00 0.00 0.00 3.86
33 34 2.432146 GTGCTATGTGGAGTCATCTGGA 59.568 50.000 0.00 0.00 0.00 3.86
34 35 3.070734 GTGCTATGTGGAGTCATCTGGAT 59.929 47.826 0.00 0.00 0.00 3.41
35 36 3.713248 TGCTATGTGGAGTCATCTGGATT 59.287 43.478 0.00 0.00 0.00 3.01
36 37 4.901250 TGCTATGTGGAGTCATCTGGATTA 59.099 41.667 0.00 0.00 0.00 1.75
37 38 5.366477 TGCTATGTGGAGTCATCTGGATTAA 59.634 40.000 0.00 0.00 0.00 1.40
38 39 6.043590 TGCTATGTGGAGTCATCTGGATTAAT 59.956 38.462 0.00 0.00 0.00 1.40
39 40 6.593382 GCTATGTGGAGTCATCTGGATTAATC 59.407 42.308 6.93 6.93 0.00 1.75
59 60 3.972133 TCCTAAATACAGGACTGACCGA 58.028 45.455 6.29 0.00 39.89 4.69
60 61 3.698040 TCCTAAATACAGGACTGACCGAC 59.302 47.826 6.29 0.00 39.89 4.79
61 62 3.700038 CCTAAATACAGGACTGACCGACT 59.300 47.826 6.29 0.00 44.74 4.18
62 63 3.594603 AAATACAGGACTGACCGACTG 57.405 47.619 6.29 0.00 44.74 3.51
63 64 2.509166 ATACAGGACTGACCGACTGA 57.491 50.000 6.29 0.00 44.74 3.41
64 65 1.822506 TACAGGACTGACCGACTGAG 58.177 55.000 6.29 0.00 44.74 3.35
65 66 0.896019 ACAGGACTGACCGACTGAGG 60.896 60.000 6.29 0.00 44.74 3.86
67 68 0.896019 AGGACTGACCGACTGAGGTG 60.896 60.000 4.50 0.00 46.09 4.00
68 69 1.179814 GGACTGACCGACTGAGGTGT 61.180 60.000 4.50 0.00 46.09 4.16
69 70 0.674534 GACTGACCGACTGAGGTGTT 59.325 55.000 4.50 0.00 46.09 3.32
70 71 1.068741 GACTGACCGACTGAGGTGTTT 59.931 52.381 4.50 0.00 46.09 2.83
71 72 2.295349 GACTGACCGACTGAGGTGTTTA 59.705 50.000 4.50 0.00 46.09 2.01
72 73 2.296471 ACTGACCGACTGAGGTGTTTAG 59.704 50.000 4.50 1.85 46.09 1.85
73 74 2.296471 CTGACCGACTGAGGTGTTTAGT 59.704 50.000 4.50 0.00 46.09 2.24
74 75 2.295349 TGACCGACTGAGGTGTTTAGTC 59.705 50.000 4.50 0.00 46.09 2.59
75 76 2.557490 GACCGACTGAGGTGTTTAGTCT 59.443 50.000 4.50 0.00 46.09 3.24
76 77 3.755378 GACCGACTGAGGTGTTTAGTCTA 59.245 47.826 4.50 0.00 46.09 2.59
77 78 4.147321 ACCGACTGAGGTGTTTAGTCTAA 58.853 43.478 0.00 0.00 44.07 2.10
78 79 4.022503 ACCGACTGAGGTGTTTAGTCTAAC 60.023 45.833 0.00 0.00 44.07 2.34
79 80 4.217983 CCGACTGAGGTGTTTAGTCTAACT 59.782 45.833 0.00 0.00 38.87 2.24
80 81 5.392286 CGACTGAGGTGTTTAGTCTAACTC 58.608 45.833 0.00 0.00 38.87 3.01
81 82 5.048921 CGACTGAGGTGTTTAGTCTAACTCA 60.049 44.000 9.23 9.23 38.87 3.41
82 83 6.514541 CGACTGAGGTGTTTAGTCTAACTCAA 60.515 42.308 10.31 0.00 38.87 3.02
83 84 7.304497 ACTGAGGTGTTTAGTCTAACTCAAT 57.696 36.000 10.31 1.04 33.64 2.57
84 85 7.379750 ACTGAGGTGTTTAGTCTAACTCAATC 58.620 38.462 10.31 7.34 33.64 2.67
85 86 7.015292 ACTGAGGTGTTTAGTCTAACTCAATCA 59.985 37.037 10.31 10.07 33.64 2.57
86 87 7.732025 TGAGGTGTTTAGTCTAACTCAATCAA 58.268 34.615 7.75 0.00 31.30 2.57
87 88 7.656137 TGAGGTGTTTAGTCTAACTCAATCAAC 59.344 37.037 7.75 0.00 31.30 3.18
88 89 7.506114 AGGTGTTTAGTCTAACTCAATCAACA 58.494 34.615 0.00 0.00 0.00 3.33
89 90 7.657761 AGGTGTTTAGTCTAACTCAATCAACAG 59.342 37.037 0.00 0.00 0.00 3.16
90 91 7.656137 GGTGTTTAGTCTAACTCAATCAACAGA 59.344 37.037 0.00 0.00 0.00 3.41
91 92 9.042008 GTGTTTAGTCTAACTCAATCAACAGAA 57.958 33.333 0.00 0.00 0.00 3.02
92 93 9.607988 TGTTTAGTCTAACTCAATCAACAGAAA 57.392 29.630 0.00 0.00 0.00 2.52
95 96 7.736447 AGTCTAACTCAATCAACAGAAAAGG 57.264 36.000 0.00 0.00 0.00 3.11
96 97 6.205658 AGTCTAACTCAATCAACAGAAAAGGC 59.794 38.462 0.00 0.00 0.00 4.35
97 98 6.017109 GTCTAACTCAATCAACAGAAAAGGCA 60.017 38.462 0.00 0.00 0.00 4.75
98 99 5.796424 AACTCAATCAACAGAAAAGGCAT 57.204 34.783 0.00 0.00 0.00 4.40
99 100 5.382618 ACTCAATCAACAGAAAAGGCATC 57.617 39.130 0.00 0.00 0.00 3.91
100 101 5.075493 ACTCAATCAACAGAAAAGGCATCT 58.925 37.500 0.00 0.00 0.00 2.90
101 102 6.240894 ACTCAATCAACAGAAAAGGCATCTA 58.759 36.000 0.00 0.00 0.00 1.98
102 103 6.373774 ACTCAATCAACAGAAAAGGCATCTAG 59.626 38.462 0.00 0.00 0.00 2.43
103 104 5.124457 TCAATCAACAGAAAAGGCATCTAGC 59.876 40.000 0.00 0.00 44.65 3.42
113 114 3.702147 GCATCTAGCCAGTGCATCT 57.298 52.632 0.00 0.00 41.13 2.90
114 115 1.510776 GCATCTAGCCAGTGCATCTC 58.489 55.000 0.00 0.00 41.13 2.75
115 116 1.780806 CATCTAGCCAGTGCATCTCG 58.219 55.000 0.00 0.00 41.13 4.04
116 117 1.339291 CATCTAGCCAGTGCATCTCGA 59.661 52.381 0.00 0.00 41.13 4.04
117 118 0.741326 TCTAGCCAGTGCATCTCGAC 59.259 55.000 0.00 0.00 41.13 4.20
118 119 0.743688 CTAGCCAGTGCATCTCGACT 59.256 55.000 0.00 0.00 41.13 4.18
119 120 1.950216 CTAGCCAGTGCATCTCGACTA 59.050 52.381 0.00 0.00 41.13 2.59
120 121 0.743688 AGCCAGTGCATCTCGACTAG 59.256 55.000 0.00 0.00 41.13 2.57
121 122 0.873743 GCCAGTGCATCTCGACTAGC 60.874 60.000 0.00 0.00 37.47 3.42
122 123 0.457443 CCAGTGCATCTCGACTAGCA 59.543 55.000 0.00 0.00 34.10 3.49
123 124 1.134995 CCAGTGCATCTCGACTAGCAA 60.135 52.381 0.00 0.00 38.91 3.91
124 125 2.610433 CAGTGCATCTCGACTAGCAAA 58.390 47.619 0.00 0.00 38.91 3.68
125 126 2.602211 CAGTGCATCTCGACTAGCAAAG 59.398 50.000 0.00 0.00 38.91 2.77
126 127 1.325943 GTGCATCTCGACTAGCAAAGC 59.674 52.381 0.00 0.00 38.91 3.51
127 128 0.574454 GCATCTCGACTAGCAAAGCG 59.426 55.000 0.00 0.00 0.00 4.68
128 129 1.914634 CATCTCGACTAGCAAAGCGT 58.085 50.000 0.00 0.00 0.00 5.07
129 130 1.849219 CATCTCGACTAGCAAAGCGTC 59.151 52.381 0.00 0.00 0.00 5.19
130 131 1.166129 TCTCGACTAGCAAAGCGTCT 58.834 50.000 0.00 0.00 0.00 4.18
131 132 1.135660 TCTCGACTAGCAAAGCGTCTG 60.136 52.381 0.00 0.00 0.00 3.51
132 133 0.732880 TCGACTAGCAAAGCGTCTGC 60.733 55.000 0.00 0.04 43.24 4.26
133 134 1.687494 CGACTAGCAAAGCGTCTGCC 61.687 60.000 4.38 0.00 44.31 4.85
134 135 0.670546 GACTAGCAAAGCGTCTGCCA 60.671 55.000 4.38 0.00 44.31 4.92
135 136 0.951040 ACTAGCAAAGCGTCTGCCAC 60.951 55.000 4.38 0.00 44.31 5.01
136 137 1.639298 CTAGCAAAGCGTCTGCCACC 61.639 60.000 4.38 0.00 44.31 4.61
137 138 2.111999 TAGCAAAGCGTCTGCCACCT 62.112 55.000 4.38 0.00 44.31 4.00
138 139 1.671054 GCAAAGCGTCTGCCACCTA 60.671 57.895 0.00 0.00 44.31 3.08
139 140 1.026718 GCAAAGCGTCTGCCACCTAT 61.027 55.000 0.00 0.00 44.31 2.57
140 141 0.729116 CAAAGCGTCTGCCACCTATG 59.271 55.000 0.00 0.00 44.31 2.23
149 150 4.664062 CCACCTATGGCCCAACAG 57.336 61.111 0.00 0.00 39.82 3.16
150 151 1.998530 CCACCTATGGCCCAACAGA 59.001 57.895 0.00 0.00 39.82 3.41
151 152 0.331278 CCACCTATGGCCCAACAGAA 59.669 55.000 0.00 0.00 39.82 3.02
152 153 1.272425 CCACCTATGGCCCAACAGAAA 60.272 52.381 0.00 0.00 39.82 2.52
153 154 2.524306 CACCTATGGCCCAACAGAAAA 58.476 47.619 0.00 0.00 0.00 2.29
154 155 2.493278 CACCTATGGCCCAACAGAAAAG 59.507 50.000 0.00 0.00 0.00 2.27
155 156 1.478105 CCTATGGCCCAACAGAAAAGC 59.522 52.381 0.00 0.00 0.00 3.51
156 157 2.170166 CTATGGCCCAACAGAAAAGCA 58.830 47.619 0.00 0.00 0.00 3.91
157 158 0.971386 ATGGCCCAACAGAAAAGCAG 59.029 50.000 0.00 0.00 0.00 4.24
158 159 1.005748 GGCCCAACAGAAAAGCAGC 60.006 57.895 0.00 0.00 0.00 5.25
159 160 1.741525 GCCCAACAGAAAAGCAGCA 59.258 52.632 0.00 0.00 0.00 4.41
160 161 0.598419 GCCCAACAGAAAAGCAGCAC 60.598 55.000 0.00 0.00 0.00 4.40
161 162 0.746063 CCCAACAGAAAAGCAGCACA 59.254 50.000 0.00 0.00 0.00 4.57
162 163 1.269413 CCCAACAGAAAAGCAGCACAG 60.269 52.381 0.00 0.00 0.00 3.66
163 164 1.269413 CCAACAGAAAAGCAGCACAGG 60.269 52.381 0.00 0.00 0.00 4.00
164 165 0.386838 AACAGAAAAGCAGCACAGGC 59.613 50.000 0.00 0.00 41.61 4.85
180 181 2.971413 GCTGCTGCCATAGAGCGG 60.971 66.667 3.85 0.00 44.42 5.52
181 182 2.280660 CTGCTGCCATAGAGCGGG 60.281 66.667 0.00 0.00 38.90 6.13
182 183 3.821636 CTGCTGCCATAGAGCGGGG 62.822 68.421 0.00 0.00 38.90 5.73
187 188 3.865383 CCATAGAGCGGGGCAGCA 61.865 66.667 6.94 0.00 40.15 4.41
188 189 2.280660 CATAGAGCGGGGCAGCAG 60.281 66.667 6.94 0.00 40.15 4.24
189 190 3.554342 ATAGAGCGGGGCAGCAGG 61.554 66.667 6.94 0.00 40.15 4.85
200 201 3.807538 CAGCAGGTGCCATGTCGC 61.808 66.667 0.00 0.00 43.38 5.19
203 204 3.129502 CAGGTGCCATGTCGCCAG 61.130 66.667 9.33 0.00 39.04 4.85
210 211 3.499737 CATGTCGCCAGCCCGTTC 61.500 66.667 0.00 0.00 0.00 3.95
211 212 4.778143 ATGTCGCCAGCCCGTTCC 62.778 66.667 0.00 0.00 0.00 3.62
216 217 3.292159 GCCAGCCCGTTCCGTTTT 61.292 61.111 0.00 0.00 0.00 2.43
217 218 2.951458 CCAGCCCGTTCCGTTTTC 59.049 61.111 0.00 0.00 0.00 2.29
218 219 2.554272 CAGCCCGTTCCGTTTTCG 59.446 61.111 0.00 0.00 43.67 3.46
219 220 3.351416 AGCCCGTTCCGTTTTCGC 61.351 61.111 0.00 0.00 42.58 4.70
220 221 3.652000 GCCCGTTCCGTTTTCGCA 61.652 61.111 0.00 0.00 42.58 5.10
221 222 2.973316 GCCCGTTCCGTTTTCGCAT 61.973 57.895 0.00 0.00 42.58 4.73
222 223 1.154301 CCCGTTCCGTTTTCGCATG 60.154 57.895 0.00 0.00 42.58 4.06
223 224 1.795962 CCGTTCCGTTTTCGCATGC 60.796 57.895 7.91 7.91 42.58 4.06
224 225 2.137395 CGTTCCGTTTTCGCATGCG 61.137 57.895 33.61 33.61 42.58 4.73
225 226 1.082366 GTTCCGTTTTCGCATGCGT 60.082 52.632 36.50 0.00 42.58 5.24
226 227 1.058057 GTTCCGTTTTCGCATGCGTC 61.058 55.000 36.50 23.36 42.58 5.19
227 228 2.487443 TTCCGTTTTCGCATGCGTCG 62.487 55.000 36.50 30.82 42.58 5.12
228 229 2.170036 CGTTTTCGCATGCGTCGT 59.830 55.556 36.50 0.00 40.74 4.34
229 230 1.853192 CGTTTTCGCATGCGTCGTC 60.853 57.895 36.50 23.66 40.74 4.20
230 231 1.853192 GTTTTCGCATGCGTCGTCG 60.853 57.895 36.50 10.86 40.74 5.12
231 232 3.005901 TTTTCGCATGCGTCGTCGG 62.006 57.895 36.50 10.08 40.74 4.79
232 233 4.710695 TTCGCATGCGTCGTCGGT 62.711 61.111 36.50 0.00 40.74 4.69
235 236 3.109547 GCATGCGTCGTCGGTCAA 61.110 61.111 0.00 0.00 37.56 3.18
236 237 2.663478 GCATGCGTCGTCGGTCAAA 61.663 57.895 0.00 0.00 37.56 2.69
237 238 1.856688 CATGCGTCGTCGGTCAAAA 59.143 52.632 3.90 0.00 37.56 2.44
238 239 0.442310 CATGCGTCGTCGGTCAAAAT 59.558 50.000 3.90 0.00 37.56 1.82
239 240 1.136085 CATGCGTCGTCGGTCAAAATT 60.136 47.619 3.90 0.00 37.56 1.82
240 241 0.509499 TGCGTCGTCGGTCAAAATTC 59.491 50.000 3.90 0.00 37.56 2.17
241 242 0.788391 GCGTCGTCGGTCAAAATTCT 59.212 50.000 3.90 0.00 37.56 2.40
242 243 1.461888 GCGTCGTCGGTCAAAATTCTG 60.462 52.381 3.90 0.00 37.56 3.02
243 244 1.790623 CGTCGTCGGTCAAAATTCTGT 59.209 47.619 0.00 0.00 0.00 3.41
244 245 2.409752 CGTCGTCGGTCAAAATTCTGTG 60.410 50.000 0.00 0.00 0.00 3.66
245 246 1.529438 TCGTCGGTCAAAATTCTGTGC 59.471 47.619 0.00 0.00 0.00 4.57
246 247 1.262950 CGTCGGTCAAAATTCTGTGCA 59.737 47.619 0.00 0.00 0.00 4.57
247 248 2.662791 CGTCGGTCAAAATTCTGTGCAG 60.663 50.000 0.00 0.00 0.00 4.41
248 249 1.266718 TCGGTCAAAATTCTGTGCAGC 59.733 47.619 0.00 0.00 0.00 5.25
249 250 1.267806 CGGTCAAAATTCTGTGCAGCT 59.732 47.619 0.00 0.00 0.00 4.24
250 251 2.669364 GGTCAAAATTCTGTGCAGCTG 58.331 47.619 10.11 10.11 0.00 4.24
251 252 2.294233 GGTCAAAATTCTGTGCAGCTGA 59.706 45.455 20.43 0.00 0.00 4.26
252 253 3.562505 GTCAAAATTCTGTGCAGCTGAG 58.437 45.455 20.43 6.19 0.00 3.35
253 254 2.555325 TCAAAATTCTGTGCAGCTGAGG 59.445 45.455 20.43 3.56 0.00 3.86
254 255 0.886563 AAATTCTGTGCAGCTGAGGC 59.113 50.000 20.43 1.90 39.06 4.70
356 357 2.249844 CACGGTGTAGGTGGTCTTTT 57.750 50.000 0.00 0.00 0.00 2.27
357 358 2.567985 CACGGTGTAGGTGGTCTTTTT 58.432 47.619 0.00 0.00 0.00 1.94
377 378 5.365021 TTTTGACATTTTTGTCCATGGGT 57.635 34.783 13.02 0.00 37.99 4.51
378 379 4.333913 TTGACATTTTTGTCCATGGGTG 57.666 40.909 13.02 2.76 37.99 4.61
380 381 2.632512 GACATTTTTGTCCATGGGTGGT 59.367 45.455 13.02 0.00 46.16 4.16
381 382 2.632512 ACATTTTTGTCCATGGGTGGTC 59.367 45.455 13.02 0.00 46.16 4.02
382 383 2.765689 TTTTTGTCCATGGGTGGTCT 57.234 45.000 13.02 0.00 46.16 3.85
383 384 2.765689 TTTTGTCCATGGGTGGTCTT 57.234 45.000 13.02 0.00 46.16 3.01
384 385 2.765689 TTTGTCCATGGGTGGTCTTT 57.234 45.000 13.02 0.00 46.16 2.52
385 386 2.765689 TTGTCCATGGGTGGTCTTTT 57.234 45.000 13.02 0.00 46.16 2.27
386 387 2.765689 TGTCCATGGGTGGTCTTTTT 57.234 45.000 13.02 0.00 46.16 1.94
408 409 5.782893 TTGACATTTTTACTGGTCAAGGG 57.217 39.130 0.00 0.00 43.19 3.95
409 410 4.148838 TGACATTTTTACTGGTCAAGGGG 58.851 43.478 0.00 0.00 37.33 4.79
410 411 4.149598 GACATTTTTACTGGTCAAGGGGT 58.850 43.478 0.00 0.00 0.00 4.95
411 412 4.149598 ACATTTTTACTGGTCAAGGGGTC 58.850 43.478 0.00 0.00 0.00 4.46
412 413 2.963599 TTTTACTGGTCAAGGGGTCC 57.036 50.000 0.00 0.00 0.00 4.46
413 414 2.127651 TTTACTGGTCAAGGGGTCCT 57.872 50.000 0.00 0.00 33.87 3.85
414 415 2.127651 TTACTGGTCAAGGGGTCCTT 57.872 50.000 0.00 0.00 45.88 3.36
415 416 2.127651 TACTGGTCAAGGGGTCCTTT 57.872 50.000 0.00 0.00 41.69 3.11
416 417 1.231963 ACTGGTCAAGGGGTCCTTTT 58.768 50.000 0.00 0.00 41.69 2.27
417 418 1.573857 ACTGGTCAAGGGGTCCTTTTT 59.426 47.619 0.00 0.00 41.69 1.94
418 419 1.963515 CTGGTCAAGGGGTCCTTTTTG 59.036 52.381 0.00 0.00 41.69 2.44
419 420 1.289530 TGGTCAAGGGGTCCTTTTTGT 59.710 47.619 0.00 0.00 41.69 2.83
420 421 1.961394 GGTCAAGGGGTCCTTTTTGTC 59.039 52.381 0.00 0.00 41.69 3.18
421 422 2.661718 GTCAAGGGGTCCTTTTTGTCA 58.338 47.619 0.00 0.00 41.69 3.58
422 423 3.028130 GTCAAGGGGTCCTTTTTGTCAA 58.972 45.455 0.00 0.00 41.69 3.18
423 424 3.449377 GTCAAGGGGTCCTTTTTGTCAAA 59.551 43.478 0.00 0.00 41.69 2.69
424 425 4.081365 GTCAAGGGGTCCTTTTTGTCAAAA 60.081 41.667 6.65 6.65 41.69 2.44
425 426 4.532521 TCAAGGGGTCCTTTTTGTCAAAAA 59.467 37.500 19.69 19.69 41.69 1.94
426 427 5.190726 TCAAGGGGTCCTTTTTGTCAAAAAT 59.809 36.000 20.82 4.80 41.69 1.82
427 428 5.708736 AGGGGTCCTTTTTGTCAAAAATT 57.291 34.783 20.82 2.58 39.43 1.82
428 429 5.680619 AGGGGTCCTTTTTGTCAAAAATTC 58.319 37.500 20.82 14.27 39.43 2.17
429 430 4.509970 GGGGTCCTTTTTGTCAAAAATTCG 59.490 41.667 20.82 11.35 39.43 3.34
430 431 5.113383 GGGTCCTTTTTGTCAAAAATTCGT 58.887 37.500 20.82 0.00 39.43 3.85
431 432 5.006261 GGGTCCTTTTTGTCAAAAATTCGTG 59.994 40.000 20.82 10.75 39.43 4.35
432 433 5.489335 GTCCTTTTTGTCAAAAATTCGTGC 58.511 37.500 20.82 7.64 39.43 5.34
433 434 4.266502 TCCTTTTTGTCAAAAATTCGTGCG 59.733 37.500 20.82 9.56 39.43 5.34
434 435 4.266502 CCTTTTTGTCAAAAATTCGTGCGA 59.733 37.500 20.82 0.00 39.43 5.10
435 436 5.368552 TTTTTGTCAAAAATTCGTGCGAG 57.631 34.783 17.56 0.00 35.57 5.03
436 437 3.953874 TTGTCAAAAATTCGTGCGAGA 57.046 38.095 0.00 0.00 0.00 4.04
437 438 3.519908 TGTCAAAAATTCGTGCGAGAG 57.480 42.857 0.00 0.00 0.00 3.20
438 439 3.127589 TGTCAAAAATTCGTGCGAGAGA 58.872 40.909 0.00 0.00 0.00 3.10
439 440 3.184379 TGTCAAAAATTCGTGCGAGAGAG 59.816 43.478 0.00 0.00 0.00 3.20
440 441 2.736721 TCAAAAATTCGTGCGAGAGAGG 59.263 45.455 0.00 0.00 0.00 3.69
441 442 1.726853 AAAATTCGTGCGAGAGAGGG 58.273 50.000 0.00 0.00 0.00 4.30
442 443 0.108138 AAATTCGTGCGAGAGAGGGG 60.108 55.000 0.00 0.00 0.00 4.79
494 495 3.118454 GGCCACCACGTCACATCG 61.118 66.667 0.00 0.00 0.00 3.84
620 653 1.594331 ATTTTTATCGCGGCCTCCTC 58.406 50.000 6.13 0.00 0.00 3.71
725 786 1.462426 AGTAAAATCCCCACCCACCA 58.538 50.000 0.00 0.00 0.00 4.17
760 821 4.888325 CTCGCCCTCCCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
779 840 0.549469 TCCCCTTCTTTATTCCGCCC 59.451 55.000 0.00 0.00 0.00 6.13
780 841 0.551396 CCCCTTCTTTATTCCGCCCT 59.449 55.000 0.00 0.00 0.00 5.19
781 842 1.477014 CCCCTTCTTTATTCCGCCCTC 60.477 57.143 0.00 0.00 0.00 4.30
783 844 1.490910 CCTTCTTTATTCCGCCCTCCT 59.509 52.381 0.00 0.00 0.00 3.69
801 862 0.738975 CTCTCACATGCCATTGCCAG 59.261 55.000 0.00 0.00 36.33 4.85
822 883 4.087892 CCCACTGCTACGCCTGCT 62.088 66.667 0.00 0.00 0.00 4.24
834 895 3.400928 CCTGCTGCTGCCTCCTCT 61.401 66.667 13.47 0.00 38.71 3.69
835 896 2.187424 CTGCTGCTGCCTCCTCTC 59.813 66.667 13.47 0.00 38.71 3.20
836 897 2.284478 TGCTGCTGCCTCCTCTCT 60.284 61.111 13.47 0.00 38.71 3.10
925 1007 2.948720 GCTGACCACGAGCTTCCCT 61.949 63.158 0.00 0.00 33.37 4.20
926 1008 1.216710 CTGACCACGAGCTTCCCTC 59.783 63.158 0.00 0.00 37.22 4.30
938 1020 0.536006 CTTCCCTCGCCATTCCCATC 60.536 60.000 0.00 0.00 0.00 3.51
941 1023 2.756042 CCTCGCCATTCCCATCCCA 61.756 63.158 0.00 0.00 0.00 4.37
942 1024 1.457604 CTCGCCATTCCCATCCCAT 59.542 57.895 0.00 0.00 0.00 4.00
943 1025 0.892358 CTCGCCATTCCCATCCCATG 60.892 60.000 0.00 0.00 0.00 3.66
944 1026 2.567497 CGCCATTCCCATCCCATGC 61.567 63.158 0.00 0.00 0.00 4.06
945 1027 1.152398 GCCATTCCCATCCCATGCT 60.152 57.895 0.00 0.00 0.00 3.79
948 1030 1.690209 CCATTCCCATCCCATGCTGTT 60.690 52.381 0.00 0.00 0.00 3.16
986 1068 3.206964 GGGACTGGCTGCTAATTAGTTC 58.793 50.000 13.91 3.78 0.00 3.01
987 1069 3.118223 GGGACTGGCTGCTAATTAGTTCT 60.118 47.826 13.91 0.00 0.00 3.01
988 1070 3.873952 GGACTGGCTGCTAATTAGTTCTG 59.126 47.826 13.91 3.97 0.00 3.02
989 1071 3.873952 GACTGGCTGCTAATTAGTTCTGG 59.126 47.826 13.91 3.82 0.00 3.86
990 1072 3.264450 ACTGGCTGCTAATTAGTTCTGGT 59.736 43.478 13.91 4.36 0.00 4.00
991 1073 4.263506 ACTGGCTGCTAATTAGTTCTGGTT 60.264 41.667 13.91 0.00 0.00 3.67
992 1074 4.261801 TGGCTGCTAATTAGTTCTGGTTC 58.738 43.478 13.91 0.00 0.00 3.62
1006 1099 2.435938 GTTCCGCGGCAATGGAGA 60.436 61.111 23.51 0.00 35.26 3.71
1007 1100 2.435938 TTCCGCGGCAATGGAGAC 60.436 61.111 23.51 0.00 35.26 3.36
1048 1141 3.723348 GTGGCGCGGGAGTTTGTC 61.723 66.667 8.83 0.00 0.00 3.18
1049 1142 4.243008 TGGCGCGGGAGTTTGTCA 62.243 61.111 8.83 0.00 0.00 3.58
1053 1146 2.398554 CGCGGGAGTTTGTCATGGG 61.399 63.158 0.00 0.00 0.00 4.00
1061 1154 1.428912 AGTTTGTCATGGGGTGGTGAT 59.571 47.619 0.00 0.00 0.00 3.06
1065 1158 1.280710 TGTCATGGGGTGGTGATGTAC 59.719 52.381 0.00 0.00 0.00 2.90
1069 1162 2.124860 GGGTGGTGATGTACGGCC 60.125 66.667 0.00 0.00 0.00 6.13
1086 1197 2.001361 GCCTATTGCTGGTGCTGCTG 62.001 60.000 0.00 0.00 40.48 4.41
1088 1199 0.679002 CTATTGCTGGTGCTGCTGGT 60.679 55.000 0.00 0.00 40.48 4.00
1089 1200 0.677731 TATTGCTGGTGCTGCTGGTC 60.678 55.000 0.00 0.00 40.48 4.02
1090 1201 2.421923 ATTGCTGGTGCTGCTGGTCT 62.422 55.000 0.00 0.00 40.48 3.85
1377 1509 3.554692 CTCAACGCGTCGATGGCC 61.555 66.667 14.44 0.00 30.83 5.36
1671 1803 2.202851 CTACCTGCTGCGCTCCTG 60.203 66.667 9.73 3.33 0.00 3.86
1722 1854 1.373590 CCAACAATTACCTCGCCGGG 61.374 60.000 2.18 0.00 36.97 5.73
2361 2493 2.992543 CAGAGCCAGAGAAGAAAAGACG 59.007 50.000 0.00 0.00 0.00 4.18
2409 2541 3.479269 CGCAAGAACGACGGCTCC 61.479 66.667 0.00 0.00 43.02 4.70
2439 2571 4.829518 TGCTCGGCGTCGTCATCG 62.830 66.667 10.18 0.00 37.69 3.84
2538 2670 1.027357 ACCACAGCAAGAACAAGCAG 58.973 50.000 0.00 0.00 0.00 4.24
2930 3063 5.629079 ACTCCATTGCTACAAGTAAAAGC 57.371 39.130 0.00 0.00 36.77 3.51
2965 3098 8.634335 TTCTTGTTTTTCTGATGACCATGATA 57.366 30.769 0.00 0.00 0.00 2.15
2966 3099 8.272545 TCTTGTTTTTCTGATGACCATGATAG 57.727 34.615 0.00 0.00 0.00 2.08
2975 3108 8.843885 TCTGATGACCATGATAGAATTTCATC 57.156 34.615 0.00 0.00 38.79 2.92
2982 3115 8.455903 ACCATGATAGAATTTCATCGTTTCAT 57.544 30.769 0.00 0.00 31.50 2.57
3011 3144 3.713826 TCCATGAAAGTTGGTACTCCC 57.286 47.619 0.00 0.00 35.64 4.30
3012 3145 3.256704 TCCATGAAAGTTGGTACTCCCT 58.743 45.455 0.00 0.00 35.64 4.20
3013 3146 3.263425 TCCATGAAAGTTGGTACTCCCTC 59.737 47.826 0.00 0.00 35.64 4.30
3015 3148 4.256920 CATGAAAGTTGGTACTCCCTCTG 58.743 47.826 0.00 0.00 31.99 3.35
3019 3152 5.367352 TGAAAGTTGGTACTCCCTCTGTTTA 59.633 40.000 0.00 0.00 31.99 2.01
3020 3153 4.886496 AGTTGGTACTCCCTCTGTTTAC 57.114 45.455 0.00 0.00 0.00 2.01
3022 3155 4.906060 AGTTGGTACTCCCTCTGTTTACTT 59.094 41.667 0.00 0.00 0.00 2.24
3023 3156 5.368816 AGTTGGTACTCCCTCTGTTTACTTT 59.631 40.000 0.00 0.00 0.00 2.66
3024 3157 5.899631 TGGTACTCCCTCTGTTTACTTTT 57.100 39.130 0.00 0.00 0.00 2.27
3025 3158 5.617252 TGGTACTCCCTCTGTTTACTTTTG 58.383 41.667 0.00 0.00 0.00 2.44
3026 3159 5.131475 TGGTACTCCCTCTGTTTACTTTTGT 59.869 40.000 0.00 0.00 0.00 2.83
3027 3160 6.327104 TGGTACTCCCTCTGTTTACTTTTGTA 59.673 38.462 0.00 0.00 0.00 2.41
3028 3161 7.147514 TGGTACTCCCTCTGTTTACTTTTGTAA 60.148 37.037 0.00 0.00 42.54 2.41
3029 3162 7.387122 GGTACTCCCTCTGTTTACTTTTGTAAG 59.613 40.741 0.00 0.00 44.60 2.34
3030 3163 6.896883 ACTCCCTCTGTTTACTTTTGTAAGT 58.103 36.000 0.00 0.00 44.60 2.24
3031 3164 6.990939 ACTCCCTCTGTTTACTTTTGTAAGTC 59.009 38.462 0.00 0.00 44.60 3.01
3032 3165 5.987347 TCCCTCTGTTTACTTTTGTAAGTCG 59.013 40.000 0.00 0.00 44.60 4.18
3033 3166 5.756833 CCCTCTGTTTACTTTTGTAAGTCGT 59.243 40.000 0.00 0.00 44.60 4.34
3034 3167 6.259387 CCCTCTGTTTACTTTTGTAAGTCGTT 59.741 38.462 0.00 0.00 44.60 3.85
3035 3168 7.201670 CCCTCTGTTTACTTTTGTAAGTCGTTT 60.202 37.037 0.00 0.00 44.60 3.60
3036 3169 8.819974 CCTCTGTTTACTTTTGTAAGTCGTTTA 58.180 33.333 0.00 0.00 44.60 2.01
3037 3170 9.845305 CTCTGTTTACTTTTGTAAGTCGTTTAG 57.155 33.333 0.00 0.00 44.60 1.85
3038 3171 9.585099 TCTGTTTACTTTTGTAAGTCGTTTAGA 57.415 29.630 0.00 0.00 44.60 2.10
3053 3186 5.985781 TCGTTTAGACAGCTGAAATTGAAC 58.014 37.500 23.35 14.80 0.00 3.18
3054 3187 5.758296 TCGTTTAGACAGCTGAAATTGAACT 59.242 36.000 23.35 8.36 0.00 3.01
3055 3188 5.848036 CGTTTAGACAGCTGAAATTGAACTG 59.152 40.000 23.35 9.38 0.00 3.16
3056 3189 6.511767 CGTTTAGACAGCTGAAATTGAACTGT 60.512 38.462 23.35 0.00 43.93 3.55
3057 3190 6.942532 TTAGACAGCTGAAATTGAACTGTT 57.057 33.333 23.35 0.00 41.45 3.16
3058 3191 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
3059 3192 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
3060 3193 7.333528 AGACAGCTGAAATTGAACTGTTTTA 57.666 32.000 23.35 0.00 41.45 1.52
3061 3194 7.420800 AGACAGCTGAAATTGAACTGTTTTAG 58.579 34.615 23.35 0.00 41.45 1.85
3062 3195 7.283127 AGACAGCTGAAATTGAACTGTTTTAGA 59.717 33.333 23.35 0.00 41.45 2.10
3063 3196 7.945134 ACAGCTGAAATTGAACTGTTTTAGAT 58.055 30.769 23.35 0.00 38.38 1.98
3064 3197 7.864379 ACAGCTGAAATTGAACTGTTTTAGATG 59.136 33.333 23.35 6.40 40.74 2.90
3065 3198 6.865205 AGCTGAAATTGAACTGTTTTAGATGC 59.135 34.615 0.00 0.00 0.00 3.91
3066 3199 6.865205 GCTGAAATTGAACTGTTTTAGATGCT 59.135 34.615 0.00 0.00 0.00 3.79
3067 3200 7.148853 GCTGAAATTGAACTGTTTTAGATGCTG 60.149 37.037 0.00 0.00 0.00 4.41
3068 3201 7.715657 TGAAATTGAACTGTTTTAGATGCTGT 58.284 30.769 0.00 0.00 0.00 4.40
3069 3202 7.862372 TGAAATTGAACTGTTTTAGATGCTGTC 59.138 33.333 0.00 0.00 0.00 3.51
3070 3203 7.516198 AATTGAACTGTTTTAGATGCTGTCT 57.484 32.000 0.00 0.00 41.11 3.41
3071 3204 6.942532 TTGAACTGTTTTAGATGCTGTCTT 57.057 33.333 0.00 0.00 38.42 3.01
3072 3205 8.621532 ATTGAACTGTTTTAGATGCTGTCTTA 57.378 30.769 0.00 0.00 38.42 2.10
3073 3206 8.445275 TTGAACTGTTTTAGATGCTGTCTTAA 57.555 30.769 0.00 0.00 38.42 1.85
3074 3207 8.445275 TGAACTGTTTTAGATGCTGTCTTAAA 57.555 30.769 0.00 0.00 38.42 1.52
3075 3208 9.066892 TGAACTGTTTTAGATGCTGTCTTAAAT 57.933 29.630 0.00 0.00 37.66 1.40
3076 3209 9.334693 GAACTGTTTTAGATGCTGTCTTAAATG 57.665 33.333 0.00 6.46 37.66 2.32
3077 3210 8.396272 ACTGTTTTAGATGCTGTCTTAAATGT 57.604 30.769 6.98 6.88 37.66 2.71
3078 3211 8.850156 ACTGTTTTAGATGCTGTCTTAAATGTT 58.150 29.630 6.98 0.00 37.66 2.71
3079 3212 9.683069 CTGTTTTAGATGCTGTCTTAAATGTTT 57.317 29.630 6.98 0.00 37.66 2.83
3086 3219 8.860088 AGATGCTGTCTTAAATGTTTAAAAGGT 58.140 29.630 0.00 0.00 31.47 3.50
3087 3220 9.129209 GATGCTGTCTTAAATGTTTAAAAGGTC 57.871 33.333 0.00 0.00 32.73 3.85
3088 3221 8.232913 TGCTGTCTTAAATGTTTAAAAGGTCT 57.767 30.769 0.00 0.00 32.73 3.85
3089 3222 8.691797 TGCTGTCTTAAATGTTTAAAAGGTCTT 58.308 29.630 0.00 0.00 32.73 3.01
3132 3265 2.029649 CCTCCTGCAATTTGGTCAACTG 60.030 50.000 0.00 0.00 0.00 3.16
3134 3267 3.820467 CTCCTGCAATTTGGTCAACTGTA 59.180 43.478 0.00 0.00 0.00 2.74
3135 3268 3.820467 TCCTGCAATTTGGTCAACTGTAG 59.180 43.478 0.00 0.00 0.00 2.74
3136 3269 3.569701 CCTGCAATTTGGTCAACTGTAGT 59.430 43.478 0.00 0.00 0.00 2.73
3137 3270 4.759693 CCTGCAATTTGGTCAACTGTAGTA 59.240 41.667 0.00 0.00 0.00 1.82
3180 3313 1.339438 ACTGCGTGATCCATTTGCTCT 60.339 47.619 0.00 0.00 0.00 4.09
3195 3328 5.852282 TTTGCTCTTAAAAGTTTGAGGCT 57.148 34.783 0.00 0.00 0.00 4.58
3249 3382 4.130118 CCTTTAGCCATAAGTACTGCTGG 58.870 47.826 16.26 16.26 35.34 4.85
3260 3393 4.207891 AGTACTGCTGGAATACACCTTG 57.792 45.455 0.00 0.00 0.00 3.61
3297 3440 9.726232 TTAGTACTGCTGTAAATCAATACTACG 57.274 33.333 5.39 0.00 0.00 3.51
3298 3441 7.993101 AGTACTGCTGTAAATCAATACTACGA 58.007 34.615 4.88 0.00 0.00 3.43
3299 3442 8.129840 AGTACTGCTGTAAATCAATACTACGAG 58.870 37.037 4.88 0.00 0.00 4.18
3300 3443 6.864342 ACTGCTGTAAATCAATACTACGAGT 58.136 36.000 0.00 0.00 0.00 4.18
3302 3445 8.464404 ACTGCTGTAAATCAATACTACGAGTTA 58.536 33.333 0.00 0.00 0.00 2.24
3303 3446 9.297586 CTGCTGTAAATCAATACTACGAGTTAA 57.702 33.333 0.00 0.00 0.00 2.01
3358 3501 3.832704 GGCACTAATGGCCCAAAAC 57.167 52.632 0.00 0.00 45.87 2.43
3399 3542 5.848036 CAGTAACTCTTTCTTGATTGTTGCG 59.152 40.000 0.00 0.00 0.00 4.85
3416 3559 6.164408 TGTTGCGATGAGTACACTTTTATG 57.836 37.500 0.00 0.00 0.00 1.90
3470 3613 9.122779 ACTCTTGCTTTGGTACTATAGTAGTAG 57.877 37.037 12.99 8.89 41.59 2.57
3471 3614 9.122779 CTCTTGCTTTGGTACTATAGTAGTAGT 57.877 37.037 12.99 0.00 41.59 2.73
3483 3626 8.795899 ACTATAGTAGTAGTACTCCTCTTGGA 57.204 38.462 13.60 0.00 40.23 3.53
3484 3627 8.650490 ACTATAGTAGTAGTACTCCTCTTGGAC 58.350 40.741 13.60 0.00 40.23 4.02
3514 3665 3.176708 GCAAATGCAACTGCTACTGATG 58.823 45.455 14.39 0.00 42.66 3.07
3515 3666 3.366679 GCAAATGCAACTGCTACTGATGT 60.367 43.478 14.39 0.00 42.66 3.06
3516 3667 4.801891 CAAATGCAACTGCTACTGATGTT 58.198 39.130 2.95 0.00 42.66 2.71
3517 3668 5.619757 GCAAATGCAACTGCTACTGATGTTA 60.620 40.000 14.39 0.00 42.66 2.41
3518 3669 6.558009 CAAATGCAACTGCTACTGATGTTAT 58.442 36.000 2.95 0.00 42.66 1.89
3520 3671 5.550232 TGCAACTGCTACTGATGTTATTG 57.450 39.130 2.95 0.00 42.66 1.90
3543 3709 7.338800 TGAGGCAAATTAAGATGGAGATTTC 57.661 36.000 0.00 0.00 0.00 2.17
3553 3719 1.538047 TGGAGATTTCAGGCAGCAAC 58.462 50.000 0.00 0.00 0.00 4.17
3556 3722 2.297033 GGAGATTTCAGGCAGCAACAAA 59.703 45.455 0.00 0.00 0.00 2.83
3560 3726 5.717119 AGATTTCAGGCAGCAACAAAATAG 58.283 37.500 0.00 0.00 0.00 1.73
3561 3727 3.302365 TTCAGGCAGCAACAAAATAGC 57.698 42.857 0.00 0.00 0.00 2.97
3564 3730 3.321682 TCAGGCAGCAACAAAATAGCTTT 59.678 39.130 0.00 0.00 36.26 3.51
3565 3731 4.060205 CAGGCAGCAACAAAATAGCTTTT 58.940 39.130 0.00 0.00 36.26 2.27
3592 3758 3.503748 GGTTCCTCTCTGGACAAAATGTG 59.496 47.826 0.00 0.00 46.14 3.21
3597 3763 1.466167 CTCTGGACAAAATGTGGAGCG 59.534 52.381 0.00 0.00 0.00 5.03
3598 3764 1.202758 TCTGGACAAAATGTGGAGCGT 60.203 47.619 0.00 0.00 0.00 5.07
3602 3768 2.415512 GGACAAAATGTGGAGCGTCTAC 59.584 50.000 0.00 0.00 0.00 2.59
3608 3774 2.941453 TGTGGAGCGTCTACTGATTC 57.059 50.000 3.92 0.00 0.00 2.52
3609 3775 1.132453 TGTGGAGCGTCTACTGATTCG 59.868 52.381 3.92 0.00 0.00 3.34
3618 3784 4.569029 CGTCTACTGATTCGTTTTCATGC 58.431 43.478 0.00 0.00 0.00 4.06
3734 3900 0.613260 TCATCCACGACAAGAAGGGG 59.387 55.000 0.00 0.00 0.00 4.79
3737 3903 1.003718 CCACGACAAGAAGGGGGTC 60.004 63.158 0.00 0.00 0.00 4.46
3934 4103 4.864334 CCTGTCCCAGATGCCGGC 62.864 72.222 22.73 22.73 32.44 6.13
4309 4490 1.305297 TCGACAGGATCCCAGTGCT 60.305 57.895 8.55 0.00 0.00 4.40
4324 4505 1.763655 TGCTCTCCTCCGCATCCAT 60.764 57.895 0.00 0.00 0.00 3.41
4343 4524 2.356553 TCCGCCGTTGAAACTCCG 60.357 61.111 0.00 0.00 0.00 4.63
4346 4527 2.975799 GCCGTTGAAACTCCGCCA 60.976 61.111 0.00 0.00 0.00 5.69
4355 4536 4.746535 TGAAACTCCGCCATACTGATTA 57.253 40.909 0.00 0.00 0.00 1.75
4379 4560 6.182507 TCCGGCAATAAATTGTAGGATAGT 57.817 37.500 13.50 0.00 39.04 2.12
4380 4561 5.995282 TCCGGCAATAAATTGTAGGATAGTG 59.005 40.000 13.50 0.00 39.04 2.74
4383 4564 6.932400 CGGCAATAAATTGTAGGATAGTGGTA 59.068 38.462 4.71 0.00 39.88 3.25
4454 4658 6.869315 TTTTGATCTTCACGTGATTAACCA 57.131 33.333 20.80 11.08 0.00 3.67
4464 4668 3.570975 ACGTGATTAACCAACCCCTTTTC 59.429 43.478 0.00 0.00 0.00 2.29
4483 4687 2.229792 TCTCAAGCTTGCGGTTTCATT 58.770 42.857 21.99 0.00 0.00 2.57
4493 4697 1.373570 CGGTTTCATTCTCTGCCCTC 58.626 55.000 0.00 0.00 0.00 4.30
4494 4698 1.373570 GGTTTCATTCTCTGCCCTCG 58.626 55.000 0.00 0.00 0.00 4.63
4496 4700 0.615331 TTTCATTCTCTGCCCTCGCT 59.385 50.000 0.00 0.00 35.36 4.93
4497 4701 0.176680 TTCATTCTCTGCCCTCGCTC 59.823 55.000 0.00 0.00 35.36 5.03
4498 4702 0.685785 TCATTCTCTGCCCTCGCTCT 60.686 55.000 0.00 0.00 35.36 4.09
4499 4703 0.530211 CATTCTCTGCCCTCGCTCTG 60.530 60.000 0.00 0.00 35.36 3.35
4500 4704 2.308968 ATTCTCTGCCCTCGCTCTGC 62.309 60.000 0.00 0.00 35.36 4.26
4559 4763 3.591196 TGCTGTTTGTTGCAAGAAACT 57.409 38.095 36.87 0.00 41.27 2.66
4561 4765 3.925913 TGCTGTTTGTTGCAAGAAACTTC 59.074 39.130 36.87 29.85 41.27 3.01
4562 4766 3.925913 GCTGTTTGTTGCAAGAAACTTCA 59.074 39.130 36.87 23.92 41.27 3.02
4563 4767 4.567959 GCTGTTTGTTGCAAGAAACTTCAT 59.432 37.500 36.87 0.00 41.27 2.57
4564 4768 5.276536 GCTGTTTGTTGCAAGAAACTTCATC 60.277 40.000 36.87 23.20 41.27 2.92
4621 4875 7.591006 AGCGACTTTATTTTTCTTGATCGTA 57.409 32.000 0.00 0.00 0.00 3.43
4661 4915 1.160137 GTGTTGGGTGATGCAGAGTC 58.840 55.000 0.00 0.00 0.00 3.36
4662 4916 0.036732 TGTTGGGTGATGCAGAGTCC 59.963 55.000 0.00 0.00 0.00 3.85
4664 4918 0.325933 TTGGGTGATGCAGAGTCCAG 59.674 55.000 0.00 0.00 0.00 3.86
4677 4936 4.203226 CAGAGTCCAGTGTCTAGAGCATA 58.797 47.826 0.00 0.00 0.00 3.14
4681 4940 7.176515 CAGAGTCCAGTGTCTAGAGCATATAAT 59.823 40.741 0.00 0.00 0.00 1.28
5018 5293 1.616994 GCCAACTTCCATAACTGCCCT 60.617 52.381 0.00 0.00 0.00 5.19
5076 5357 0.041684 TGATCTGTGGAGGAGGCTCA 59.958 55.000 17.69 0.00 0.00 4.26
5083 5364 0.252881 TGGAGGAGGCTCAATCTGGT 60.253 55.000 17.69 0.00 0.00 4.00
5134 5421 3.840666 AGATGTTGCTTCCTCAGACCTAA 59.159 43.478 0.00 0.00 0.00 2.69
5252 5539 9.110502 TCGCTCTATCAATATATCGATGTACTT 57.889 33.333 8.54 0.17 0.00 2.24
5309 5597 9.248291 CTACACAACAAAATTTGAAGTTAGCAT 57.752 29.630 13.19 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.462759 GACTCCACATAGCACAGGGC 60.463 60.000 0.00 0.00 45.30 5.19
8 9 0.904649 TGACTCCACATAGCACAGGG 59.095 55.000 0.00 0.00 0.00 4.45
9 10 2.433604 AGATGACTCCACATAGCACAGG 59.566 50.000 0.00 0.00 0.00 4.00
10 11 3.455327 CAGATGACTCCACATAGCACAG 58.545 50.000 0.00 0.00 0.00 3.66
11 12 2.169144 CCAGATGACTCCACATAGCACA 59.831 50.000 0.00 0.00 0.00 4.57
12 13 2.432146 TCCAGATGACTCCACATAGCAC 59.568 50.000 0.00 0.00 0.00 4.40
13 14 2.750814 TCCAGATGACTCCACATAGCA 58.249 47.619 0.00 0.00 0.00 3.49
14 15 4.348863 AATCCAGATGACTCCACATAGC 57.651 45.455 0.00 0.00 0.00 2.97
15 16 7.102346 GGATTAATCCAGATGACTCCACATAG 58.898 42.308 26.61 0.00 46.38 2.23
16 17 7.009179 GGATTAATCCAGATGACTCCACATA 57.991 40.000 26.61 0.00 46.38 2.29
17 18 5.874093 GGATTAATCCAGATGACTCCACAT 58.126 41.667 26.61 0.00 46.38 3.21
18 19 5.296151 GGATTAATCCAGATGACTCCACA 57.704 43.478 26.61 0.00 46.38 4.17
38 39 3.698040 GTCGGTCAGTCCTGTATTTAGGA 59.302 47.826 0.00 0.00 44.44 2.94
39 40 3.700038 AGTCGGTCAGTCCTGTATTTAGG 59.300 47.826 0.00 0.00 39.29 2.69
40 41 4.398358 TCAGTCGGTCAGTCCTGTATTTAG 59.602 45.833 0.00 0.00 0.00 1.85
41 42 4.338012 TCAGTCGGTCAGTCCTGTATTTA 58.662 43.478 0.00 0.00 0.00 1.40
42 43 3.162666 TCAGTCGGTCAGTCCTGTATTT 58.837 45.455 0.00 0.00 0.00 1.40
43 44 2.755655 CTCAGTCGGTCAGTCCTGTATT 59.244 50.000 0.00 0.00 0.00 1.89
44 45 2.370349 CTCAGTCGGTCAGTCCTGTAT 58.630 52.381 0.00 0.00 0.00 2.29
45 46 1.613520 CCTCAGTCGGTCAGTCCTGTA 60.614 57.143 0.00 0.00 0.00 2.74
46 47 0.896019 CCTCAGTCGGTCAGTCCTGT 60.896 60.000 0.00 0.00 0.00 4.00
47 48 0.896019 ACCTCAGTCGGTCAGTCCTG 60.896 60.000 0.00 0.00 29.14 3.86
48 49 0.896019 CACCTCAGTCGGTCAGTCCT 60.896 60.000 0.00 0.00 34.29 3.85
49 50 1.179814 ACACCTCAGTCGGTCAGTCC 61.180 60.000 0.00 0.00 34.29 3.85
50 51 0.674534 AACACCTCAGTCGGTCAGTC 59.325 55.000 0.00 0.00 34.29 3.51
51 52 1.120530 AAACACCTCAGTCGGTCAGT 58.879 50.000 0.00 0.00 34.29 3.41
52 53 2.296471 ACTAAACACCTCAGTCGGTCAG 59.704 50.000 0.00 0.00 34.29 3.51
53 54 2.295349 GACTAAACACCTCAGTCGGTCA 59.705 50.000 0.00 0.00 34.29 4.02
54 55 2.557490 AGACTAAACACCTCAGTCGGTC 59.443 50.000 0.00 0.00 42.80 4.79
55 56 2.595238 AGACTAAACACCTCAGTCGGT 58.405 47.619 0.00 0.00 42.80 4.69
56 57 4.217983 AGTTAGACTAAACACCTCAGTCGG 59.782 45.833 0.00 0.00 42.80 4.79
57 58 5.048921 TGAGTTAGACTAAACACCTCAGTCG 60.049 44.000 8.46 0.00 42.80 4.18
58 59 6.328641 TGAGTTAGACTAAACACCTCAGTC 57.671 41.667 8.46 0.00 39.19 3.51
59 60 6.726490 TTGAGTTAGACTAAACACCTCAGT 57.274 37.500 11.13 0.00 0.00 3.41
60 61 7.378966 TGATTGAGTTAGACTAAACACCTCAG 58.621 38.462 11.13 0.00 0.00 3.35
61 62 7.297936 TGATTGAGTTAGACTAAACACCTCA 57.702 36.000 8.46 8.46 0.00 3.86
62 63 7.656137 TGTTGATTGAGTTAGACTAAACACCTC 59.344 37.037 0.00 0.54 0.00 3.85
63 64 7.506114 TGTTGATTGAGTTAGACTAAACACCT 58.494 34.615 0.00 0.00 0.00 4.00
64 65 7.656137 TCTGTTGATTGAGTTAGACTAAACACC 59.344 37.037 0.00 0.00 0.00 4.16
65 66 8.589335 TCTGTTGATTGAGTTAGACTAAACAC 57.411 34.615 0.00 0.00 0.00 3.32
66 67 9.607988 TTTCTGTTGATTGAGTTAGACTAAACA 57.392 29.630 0.00 0.00 0.00 2.83
69 70 9.273016 CCTTTTCTGTTGATTGAGTTAGACTAA 57.727 33.333 0.00 0.00 0.00 2.24
70 71 7.387948 GCCTTTTCTGTTGATTGAGTTAGACTA 59.612 37.037 0.00 0.00 0.00 2.59
71 72 6.205658 GCCTTTTCTGTTGATTGAGTTAGACT 59.794 38.462 0.00 0.00 0.00 3.24
72 73 6.017109 TGCCTTTTCTGTTGATTGAGTTAGAC 60.017 38.462 0.00 0.00 0.00 2.59
73 74 6.061441 TGCCTTTTCTGTTGATTGAGTTAGA 58.939 36.000 0.00 0.00 0.00 2.10
74 75 6.317789 TGCCTTTTCTGTTGATTGAGTTAG 57.682 37.500 0.00 0.00 0.00 2.34
75 76 6.716628 AGATGCCTTTTCTGTTGATTGAGTTA 59.283 34.615 0.00 0.00 0.00 2.24
76 77 5.537674 AGATGCCTTTTCTGTTGATTGAGTT 59.462 36.000 0.00 0.00 0.00 3.01
77 78 5.075493 AGATGCCTTTTCTGTTGATTGAGT 58.925 37.500 0.00 0.00 0.00 3.41
78 79 5.640189 AGATGCCTTTTCTGTTGATTGAG 57.360 39.130 0.00 0.00 0.00 3.02
79 80 5.124457 GCTAGATGCCTTTTCTGTTGATTGA 59.876 40.000 0.00 0.00 35.15 2.57
80 81 5.338365 GCTAGATGCCTTTTCTGTTGATTG 58.662 41.667 0.00 0.00 35.15 2.67
81 82 5.573337 GCTAGATGCCTTTTCTGTTGATT 57.427 39.130 0.00 0.00 35.15 2.57
95 96 1.510776 GAGATGCACTGGCTAGATGC 58.489 55.000 3.17 10.65 41.91 3.91
96 97 1.339291 TCGAGATGCACTGGCTAGATG 59.661 52.381 3.17 0.00 41.91 2.90
97 98 1.339610 GTCGAGATGCACTGGCTAGAT 59.660 52.381 3.17 0.00 41.91 1.98
98 99 0.741326 GTCGAGATGCACTGGCTAGA 59.259 55.000 3.17 0.00 41.91 2.43
99 100 0.743688 AGTCGAGATGCACTGGCTAG 59.256 55.000 0.00 0.00 41.91 3.42
100 101 1.950216 CTAGTCGAGATGCACTGGCTA 59.050 52.381 0.00 0.00 41.91 3.93
101 102 0.743688 CTAGTCGAGATGCACTGGCT 59.256 55.000 0.00 0.00 41.91 4.75
102 103 0.873743 GCTAGTCGAGATGCACTGGC 60.874 60.000 0.00 0.00 39.56 4.85
103 104 0.457443 TGCTAGTCGAGATGCACTGG 59.543 55.000 0.00 0.00 0.00 4.00
104 105 2.284263 TTGCTAGTCGAGATGCACTG 57.716 50.000 5.77 0.00 35.01 3.66
105 106 2.886081 CTTTGCTAGTCGAGATGCACT 58.114 47.619 5.77 0.00 35.01 4.40
106 107 1.325943 GCTTTGCTAGTCGAGATGCAC 59.674 52.381 5.77 0.00 35.01 4.57
107 108 1.645034 GCTTTGCTAGTCGAGATGCA 58.355 50.000 0.00 0.00 0.00 3.96
108 109 0.574454 CGCTTTGCTAGTCGAGATGC 59.426 55.000 0.00 0.00 0.00 3.91
109 110 1.849219 GACGCTTTGCTAGTCGAGATG 59.151 52.381 0.00 0.00 0.00 2.90
110 111 1.746220 AGACGCTTTGCTAGTCGAGAT 59.254 47.619 0.00 0.00 39.65 2.75
111 112 1.135660 CAGACGCTTTGCTAGTCGAGA 60.136 52.381 0.00 0.00 39.65 4.04
112 113 1.263776 CAGACGCTTTGCTAGTCGAG 58.736 55.000 0.00 0.00 39.65 4.04
113 114 0.732880 GCAGACGCTTTGCTAGTCGA 60.733 55.000 0.00 0.00 39.65 4.20
114 115 1.687494 GGCAGACGCTTTGCTAGTCG 61.687 60.000 6.38 0.00 41.27 4.18
115 116 0.670546 TGGCAGACGCTTTGCTAGTC 60.671 55.000 6.38 0.00 41.27 2.59
116 117 0.951040 GTGGCAGACGCTTTGCTAGT 60.951 55.000 6.38 0.00 41.27 2.57
117 118 1.639298 GGTGGCAGACGCTTTGCTAG 61.639 60.000 6.38 0.00 41.27 3.42
118 119 1.671054 GGTGGCAGACGCTTTGCTA 60.671 57.895 6.38 0.00 41.27 3.49
119 120 2.111999 TAGGTGGCAGACGCTTTGCT 62.112 55.000 6.38 0.00 41.27 3.91
120 121 1.026718 ATAGGTGGCAGACGCTTTGC 61.027 55.000 0.00 0.00 40.80 3.68
121 122 0.729116 CATAGGTGGCAGACGCTTTG 59.271 55.000 0.00 0.00 38.60 2.77
122 123 0.392998 CCATAGGTGGCAGACGCTTT 60.393 55.000 0.00 0.00 39.01 3.51
123 124 1.221840 CCATAGGTGGCAGACGCTT 59.778 57.895 0.00 0.00 39.01 4.68
124 125 2.903357 CCATAGGTGGCAGACGCT 59.097 61.111 0.00 0.00 39.01 5.07
133 134 2.214376 TTTCTGTTGGGCCATAGGTG 57.786 50.000 7.26 0.00 0.00 4.00
134 135 2.807676 CTTTTCTGTTGGGCCATAGGT 58.192 47.619 7.26 0.00 0.00 3.08
135 136 1.478105 GCTTTTCTGTTGGGCCATAGG 59.522 52.381 7.26 0.00 0.00 2.57
136 137 2.165030 CTGCTTTTCTGTTGGGCCATAG 59.835 50.000 7.26 9.68 0.00 2.23
137 138 2.170166 CTGCTTTTCTGTTGGGCCATA 58.830 47.619 7.26 0.00 0.00 2.74
138 139 0.971386 CTGCTTTTCTGTTGGGCCAT 59.029 50.000 7.26 0.00 0.00 4.40
139 140 1.747325 GCTGCTTTTCTGTTGGGCCA 61.747 55.000 0.00 0.00 0.00 5.36
140 141 1.005748 GCTGCTTTTCTGTTGGGCC 60.006 57.895 0.00 0.00 0.00 5.80
141 142 0.598419 GTGCTGCTTTTCTGTTGGGC 60.598 55.000 0.00 0.00 0.00 5.36
142 143 0.746063 TGTGCTGCTTTTCTGTTGGG 59.254 50.000 0.00 0.00 0.00 4.12
143 144 1.269413 CCTGTGCTGCTTTTCTGTTGG 60.269 52.381 0.00 0.00 0.00 3.77
144 145 1.866880 GCCTGTGCTGCTTTTCTGTTG 60.867 52.381 0.00 0.00 33.53 3.33
145 146 0.386838 GCCTGTGCTGCTTTTCTGTT 59.613 50.000 0.00 0.00 33.53 3.16
146 147 2.036236 GCCTGTGCTGCTTTTCTGT 58.964 52.632 0.00 0.00 33.53 3.41
147 148 4.959446 GCCTGTGCTGCTTTTCTG 57.041 55.556 0.00 0.00 33.53 3.02
163 164 2.971413 CCGCTCTATGGCAGCAGC 60.971 66.667 0.00 0.00 36.61 5.25
164 165 2.280660 CCCGCTCTATGGCAGCAG 60.281 66.667 0.00 0.00 36.61 4.24
165 166 3.865383 CCCCGCTCTATGGCAGCA 61.865 66.667 0.00 0.00 36.61 4.41
170 171 3.821636 CTGCTGCCCCGCTCTATGG 62.822 68.421 0.00 0.00 0.00 2.74
171 172 2.280660 CTGCTGCCCCGCTCTATG 60.281 66.667 0.00 0.00 0.00 2.23
172 173 3.554342 CCTGCTGCCCCGCTCTAT 61.554 66.667 0.00 0.00 0.00 1.98
182 183 3.807538 CGACATGGCACCTGCTGC 61.808 66.667 0.00 0.00 46.31 5.25
183 184 3.807538 GCGACATGGCACCTGCTG 61.808 66.667 0.00 0.00 41.70 4.41
193 194 3.499737 GAACGGGCTGGCGACATG 61.500 66.667 0.00 0.00 41.51 3.21
194 195 4.778143 GGAACGGGCTGGCGACAT 62.778 66.667 0.00 0.00 41.51 3.06
207 208 1.058057 GACGCATGCGAAAACGGAAC 61.058 55.000 43.72 18.62 42.83 3.62
208 209 1.205568 GACGCATGCGAAAACGGAA 59.794 52.632 43.72 0.00 42.83 4.30
209 210 2.857448 GACGCATGCGAAAACGGA 59.143 55.556 43.72 0.00 42.83 4.69
210 211 2.570581 CGACGCATGCGAAAACGG 60.571 61.111 43.72 21.45 42.83 4.44
211 212 1.853192 GACGACGCATGCGAAAACG 60.853 57.895 43.72 36.23 42.83 3.60
212 213 1.853192 CGACGACGCATGCGAAAAC 60.853 57.895 43.72 27.93 42.83 2.43
213 214 2.468096 CGACGACGCATGCGAAAA 59.532 55.556 43.72 0.00 42.83 2.29
214 215 3.474904 CCGACGACGCATGCGAAA 61.475 61.111 43.72 0.00 42.83 3.46
215 216 4.710695 ACCGACGACGCATGCGAA 62.711 61.111 43.72 0.00 42.83 4.70
218 219 2.165362 TTTTGACCGACGACGCATGC 62.165 55.000 7.91 7.91 38.29 4.06
219 220 0.442310 ATTTTGACCGACGACGCATG 59.558 50.000 0.64 0.00 38.29 4.06
220 221 1.127951 GAATTTTGACCGACGACGCAT 59.872 47.619 0.64 0.00 38.29 4.73
221 222 0.509499 GAATTTTGACCGACGACGCA 59.491 50.000 0.64 0.00 38.29 5.24
222 223 0.788391 AGAATTTTGACCGACGACGC 59.212 50.000 0.64 0.00 38.29 5.19
223 224 1.790623 ACAGAATTTTGACCGACGACG 59.209 47.619 2.48 0.00 39.43 5.12
224 225 2.661979 GCACAGAATTTTGACCGACGAC 60.662 50.000 2.48 0.00 0.00 4.34
225 226 1.529438 GCACAGAATTTTGACCGACGA 59.471 47.619 2.48 0.00 0.00 4.20
226 227 1.262950 TGCACAGAATTTTGACCGACG 59.737 47.619 2.48 0.00 0.00 5.12
227 228 2.918131 GCTGCACAGAATTTTGACCGAC 60.918 50.000 2.48 0.00 0.00 4.79
228 229 1.266718 GCTGCACAGAATTTTGACCGA 59.733 47.619 2.48 0.00 0.00 4.69
229 230 1.267806 AGCTGCACAGAATTTTGACCG 59.732 47.619 2.48 0.00 0.00 4.79
230 231 2.294233 TCAGCTGCACAGAATTTTGACC 59.706 45.455 9.47 0.00 0.00 4.02
231 232 3.562505 CTCAGCTGCACAGAATTTTGAC 58.437 45.455 9.47 0.00 0.00 3.18
232 233 2.555325 CCTCAGCTGCACAGAATTTTGA 59.445 45.455 9.47 0.00 0.00 2.69
233 234 2.925306 GCCTCAGCTGCACAGAATTTTG 60.925 50.000 9.47 0.00 35.50 2.44
234 235 1.271656 GCCTCAGCTGCACAGAATTTT 59.728 47.619 9.47 0.00 35.50 1.82
235 236 0.886563 GCCTCAGCTGCACAGAATTT 59.113 50.000 9.47 0.00 35.50 1.82
236 237 2.564471 GCCTCAGCTGCACAGAATT 58.436 52.632 9.47 0.00 35.50 2.17
237 238 4.315588 GCCTCAGCTGCACAGAAT 57.684 55.556 9.47 0.00 35.50 2.40
337 338 2.249844 AAAAGACCACCTACACCGTG 57.750 50.000 0.00 0.00 0.00 4.94
354 355 5.587844 CACCCATGGACAAAAATGTCAAAAA 59.412 36.000 15.22 0.00 40.38 1.94
355 356 5.121811 CACCCATGGACAAAAATGTCAAAA 58.878 37.500 15.22 0.00 40.38 2.44
356 357 4.701765 CACCCATGGACAAAAATGTCAAA 58.298 39.130 15.22 0.00 40.38 2.69
357 358 4.333913 CACCCATGGACAAAAATGTCAA 57.666 40.909 15.22 0.00 40.38 3.18
383 384 7.044798 CCCTTGACCAGTAAAAATGTCAAAAA 58.955 34.615 5.56 0.00 44.44 1.94
384 385 6.407525 CCCCTTGACCAGTAAAAATGTCAAAA 60.408 38.462 5.56 0.00 44.44 2.44
385 386 5.069781 CCCCTTGACCAGTAAAAATGTCAAA 59.930 40.000 5.56 0.00 44.44 2.69
386 387 4.586841 CCCCTTGACCAGTAAAAATGTCAA 59.413 41.667 0.00 0.00 43.34 3.18
387 388 4.148838 CCCCTTGACCAGTAAAAATGTCA 58.851 43.478 0.00 0.00 36.04 3.58
388 389 4.149598 ACCCCTTGACCAGTAAAAATGTC 58.850 43.478 0.00 0.00 0.00 3.06
389 390 4.149598 GACCCCTTGACCAGTAAAAATGT 58.850 43.478 0.00 0.00 0.00 2.71
390 391 3.509967 GGACCCCTTGACCAGTAAAAATG 59.490 47.826 0.00 0.00 0.00 2.32
391 392 3.401342 AGGACCCCTTGACCAGTAAAAAT 59.599 43.478 0.00 0.00 0.00 1.82
392 393 2.787035 AGGACCCCTTGACCAGTAAAAA 59.213 45.455 0.00 0.00 0.00 1.94
393 394 2.424793 AGGACCCCTTGACCAGTAAAA 58.575 47.619 0.00 0.00 0.00 1.52
394 395 2.127651 AGGACCCCTTGACCAGTAAA 57.872 50.000 0.00 0.00 0.00 2.01
395 396 2.127651 AAGGACCCCTTGACCAGTAA 57.872 50.000 0.00 0.00 42.96 2.24
396 397 2.127651 AAAGGACCCCTTGACCAGTA 57.872 50.000 0.00 0.00 43.92 2.74
397 398 1.231963 AAAAGGACCCCTTGACCAGT 58.768 50.000 0.00 0.00 43.92 4.00
398 399 1.963515 CAAAAAGGACCCCTTGACCAG 59.036 52.381 0.00 0.00 43.92 4.00
399 400 1.289530 ACAAAAAGGACCCCTTGACCA 59.710 47.619 0.00 0.00 43.92 4.02
400 401 1.961394 GACAAAAAGGACCCCTTGACC 59.039 52.381 0.00 0.00 43.92 4.02
401 402 2.661718 TGACAAAAAGGACCCCTTGAC 58.338 47.619 0.00 0.67 43.92 3.18
402 403 3.390175 TTGACAAAAAGGACCCCTTGA 57.610 42.857 0.00 0.00 43.92 3.02
403 404 4.479786 TTTTGACAAAAAGGACCCCTTG 57.520 40.909 10.92 0.00 43.92 3.61
405 406 5.680619 GAATTTTTGACAAAAAGGACCCCT 58.319 37.500 25.55 9.23 42.97 4.79
406 407 4.509970 CGAATTTTTGACAAAAAGGACCCC 59.490 41.667 25.55 12.69 42.97 4.95
407 408 5.006261 CACGAATTTTTGACAAAAAGGACCC 59.994 40.000 25.55 13.99 42.97 4.46
408 409 5.501736 GCACGAATTTTTGACAAAAAGGACC 60.502 40.000 25.55 15.30 42.97 4.46
409 410 5.489335 GCACGAATTTTTGACAAAAAGGAC 58.511 37.500 25.55 18.46 42.97 3.85
410 411 4.266502 CGCACGAATTTTTGACAAAAAGGA 59.733 37.500 25.55 8.72 42.97 3.36
411 412 4.266502 TCGCACGAATTTTTGACAAAAAGG 59.733 37.500 25.55 19.79 42.97 3.11
412 413 5.229052 TCTCGCACGAATTTTTGACAAAAAG 59.771 36.000 25.55 16.95 42.97 2.27
413 414 5.096169 TCTCGCACGAATTTTTGACAAAAA 58.904 33.333 24.27 24.27 43.76 1.94
414 415 4.663166 TCTCGCACGAATTTTTGACAAAA 58.337 34.783 9.30 9.30 36.30 2.44
415 416 4.034626 TCTCTCGCACGAATTTTTGACAAA 59.965 37.500 0.00 0.00 0.00 2.83
416 417 3.558006 TCTCTCGCACGAATTTTTGACAA 59.442 39.130 0.00 0.00 0.00 3.18
417 418 3.127589 TCTCTCGCACGAATTTTTGACA 58.872 40.909 0.00 0.00 0.00 3.58
418 419 3.423645 CCTCTCTCGCACGAATTTTTGAC 60.424 47.826 0.00 0.00 0.00 3.18
419 420 2.736721 CCTCTCTCGCACGAATTTTTGA 59.263 45.455 0.00 0.00 0.00 2.69
420 421 2.159653 CCCTCTCTCGCACGAATTTTTG 60.160 50.000 0.00 0.00 0.00 2.44
421 422 2.076863 CCCTCTCTCGCACGAATTTTT 58.923 47.619 0.00 0.00 0.00 1.94
422 423 1.676014 CCCCTCTCTCGCACGAATTTT 60.676 52.381 0.00 0.00 0.00 1.82
423 424 0.108138 CCCCTCTCTCGCACGAATTT 60.108 55.000 0.00 0.00 0.00 1.82
424 425 1.258445 ACCCCTCTCTCGCACGAATT 61.258 55.000 0.00 0.00 0.00 2.17
425 426 1.682684 ACCCCTCTCTCGCACGAAT 60.683 57.895 0.00 0.00 0.00 3.34
426 427 2.282958 ACCCCTCTCTCGCACGAA 60.283 61.111 0.00 0.00 0.00 3.85
427 428 2.838748 ATCACCCCTCTCTCGCACGA 62.839 60.000 0.00 0.00 0.00 4.35
428 429 1.949847 AATCACCCCTCTCTCGCACG 61.950 60.000 0.00 0.00 0.00 5.34
429 430 0.179097 GAATCACCCCTCTCTCGCAC 60.179 60.000 0.00 0.00 0.00 5.34
430 431 1.667154 CGAATCACCCCTCTCTCGCA 61.667 60.000 0.00 0.00 0.00 5.10
431 432 1.066587 CGAATCACCCCTCTCTCGC 59.933 63.158 0.00 0.00 0.00 5.03
432 433 1.038130 ACCGAATCACCCCTCTCTCG 61.038 60.000 0.00 0.00 0.00 4.04
433 434 1.134670 CAACCGAATCACCCCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
434 435 0.905357 CAACCGAATCACCCCTCTCT 59.095 55.000 0.00 0.00 0.00 3.10
435 436 0.744771 GCAACCGAATCACCCCTCTC 60.745 60.000 0.00 0.00 0.00 3.20
436 437 1.299976 GCAACCGAATCACCCCTCT 59.700 57.895 0.00 0.00 0.00 3.69
437 438 2.106683 CGCAACCGAATCACCCCTC 61.107 63.158 0.00 0.00 36.29 4.30
438 439 2.046314 CGCAACCGAATCACCCCT 60.046 61.111 0.00 0.00 36.29 4.79
439 440 2.046700 TCGCAACCGAATCACCCC 60.047 61.111 0.00 0.00 41.17 4.95
440 441 1.375523 AGTCGCAACCGAATCACCC 60.376 57.895 0.00 0.00 46.34 4.61
441 442 4.278956 AGTCGCAACCGAATCACC 57.721 55.556 0.00 0.00 46.34 4.02
503 504 2.880879 CGTGGATCGAGCGGTGTG 60.881 66.667 0.00 0.00 42.86 3.82
504 505 4.129737 CCGTGGATCGAGCGGTGT 62.130 66.667 11.49 0.00 42.86 4.16
506 507 3.823330 GTCCGTGGATCGAGCGGT 61.823 66.667 16.87 0.00 45.11 5.68
507 508 4.570663 GGTCCGTGGATCGAGCGG 62.571 72.222 12.97 12.97 46.12 5.52
581 614 3.431725 GAGTTTTGGGGCGCGAGG 61.432 66.667 12.10 0.00 0.00 4.63
585 618 0.038618 AAATTCGAGTTTTGGGGCGC 60.039 50.000 0.00 0.00 0.00 6.53
704 737 2.176045 GGTGGGTGGGGATTTTACTTG 58.824 52.381 0.00 0.00 0.00 3.16
725 786 2.660064 GGCGATGAGGTGGTGGACT 61.660 63.158 0.00 0.00 0.00 3.85
754 815 3.496870 CGGAATAAAGAAGGGGATGGGAG 60.497 52.174 0.00 0.00 0.00 4.30
756 817 2.863809 CGGAATAAAGAAGGGGATGGG 58.136 52.381 0.00 0.00 0.00 4.00
760 821 0.549469 GGGCGGAATAAAGAAGGGGA 59.451 55.000 0.00 0.00 0.00 4.81
779 840 1.022735 GCAATGGCATGTGAGAGGAG 58.977 55.000 0.00 0.00 40.72 3.69
780 841 0.394762 GGCAATGGCATGTGAGAGGA 60.395 55.000 0.00 0.00 43.71 3.71
781 842 0.681887 TGGCAATGGCATGTGAGAGG 60.682 55.000 5.05 0.00 43.71 3.69
783 844 1.317431 GCTGGCAATGGCATGTGAGA 61.317 55.000 10.64 0.00 43.71 3.27
822 883 1.992277 GGGAAGAGAGGAGGCAGCA 60.992 63.158 0.00 0.00 0.00 4.41
832 893 1.156322 AGGAGGGGAGTGGGAAGAGA 61.156 60.000 0.00 0.00 0.00 3.10
833 894 0.252927 AAGGAGGGGAGTGGGAAGAG 60.253 60.000 0.00 0.00 0.00 2.85
834 895 0.252742 GAAGGAGGGGAGTGGGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
835 896 1.275421 GGAAGGAGGGGAGTGGGAAG 61.275 65.000 0.00 0.00 0.00 3.46
836 897 1.229853 GGAAGGAGGGGAGTGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
906 967 2.435059 GGAAGCTCGTGGTCAGCC 60.435 66.667 0.00 0.00 37.63 4.85
909 970 2.636412 CGAGGGAAGCTCGTGGTCA 61.636 63.158 0.00 0.00 39.25 4.02
925 1007 1.151221 CATGGGATGGGAATGGCGA 59.849 57.895 0.00 0.00 0.00 5.54
926 1008 2.567497 GCATGGGATGGGAATGGCG 61.567 63.158 0.00 0.00 0.00 5.69
938 1020 1.875963 GACAACGGAACAGCATGGG 59.124 57.895 0.00 0.00 43.62 4.00
965 1047 3.118223 AGAACTAATTAGCAGCCAGTCCC 60.118 47.826 12.54 0.00 0.00 4.46
972 1054 3.309954 CGGAACCAGAACTAATTAGCAGC 59.690 47.826 12.54 2.41 0.00 5.25
986 1068 3.814268 CCATTGCCGCGGAACCAG 61.814 66.667 33.48 13.77 0.00 4.00
987 1069 4.337177 TCCATTGCCGCGGAACCA 62.337 61.111 33.48 15.63 0.00 3.67
988 1070 3.508840 CTCCATTGCCGCGGAACC 61.509 66.667 33.48 12.57 0.00 3.62
989 1071 2.435938 TCTCCATTGCCGCGGAAC 60.436 61.111 33.48 13.46 0.00 3.62
990 1072 2.435938 GTCTCCATTGCCGCGGAA 60.436 61.111 33.48 19.06 0.00 4.30
991 1073 4.812476 CGTCTCCATTGCCGCGGA 62.812 66.667 33.48 9.86 0.00 5.54
992 1074 4.812476 TCGTCTCCATTGCCGCGG 62.812 66.667 24.05 24.05 0.00 6.46
1038 1131 0.611896 CCACCCCATGACAAACTCCC 60.612 60.000 0.00 0.00 0.00 4.30
1048 1141 0.463654 CCGTACATCACCACCCCATG 60.464 60.000 0.00 0.00 0.00 3.66
1049 1142 1.912220 CCGTACATCACCACCCCAT 59.088 57.895 0.00 0.00 0.00 4.00
1053 1146 0.756903 ATAGGCCGTACATCACCACC 59.243 55.000 0.00 0.00 0.00 4.61
1061 1154 0.107897 CACCAGCAATAGGCCGTACA 60.108 55.000 0.00 0.00 46.50 2.90
1065 1158 2.124570 AGCACCAGCAATAGGCCG 60.125 61.111 0.00 0.00 46.50 6.13
1069 1162 0.679002 ACCAGCAGCACCAGCAATAG 60.679 55.000 0.00 0.00 45.49 1.73
1307 1439 4.090057 GCGTGCTGAAGTTCCCGC 62.090 66.667 0.00 5.59 0.00 6.13
1566 1698 4.736896 GCGCCGGAGAGGTCGTTT 62.737 66.667 10.31 0.00 43.70 3.60
1710 1842 4.772231 AGCTCCCCGGCGAGGTAA 62.772 66.667 18.96 0.00 38.79 2.85
1758 1890 0.546122 AGTTGTTGCTGAGGTCCACA 59.454 50.000 0.00 0.00 0.00 4.17
1767 1899 2.154462 CCCCTGAAGTAGTTGTTGCTG 58.846 52.381 0.00 0.00 0.00 4.41
1812 1944 3.308014 GAGGAACCTCAGCTGCGCT 62.308 63.158 9.47 0.00 42.31 5.92
1821 1953 0.031721 ACGACACGTTGAGGAACCTC 59.968 55.000 13.32 13.32 36.35 3.85
2341 2473 2.028567 CCGTCTTTTCTTCTCTGGCTCT 60.029 50.000 0.00 0.00 0.00 4.09
2348 2480 0.790814 CGTGGCCGTCTTTTCTTCTC 59.209 55.000 0.00 0.00 0.00 2.87
2361 2493 4.530857 CATCCCCTCGACGTGGCC 62.531 72.222 10.46 0.00 0.00 5.36
2372 2504 3.908081 CGCCAATGCAGCATCCCC 61.908 66.667 8.77 0.00 37.32 4.81
2392 2524 3.479269 GGAGCCGTCGTTCTTGCG 61.479 66.667 0.00 0.00 0.00 4.85
2409 2541 2.202544 GAGCAGTCCGAGCTGTCG 60.203 66.667 0.00 0.00 43.58 4.35
2730 2862 4.314440 TTGAGCTTGTCGGCGCCT 62.314 61.111 26.68 2.51 37.29 5.52
2841 2973 1.589196 GGCGTAGTCGTGGATGAGC 60.589 63.158 0.00 0.00 39.49 4.26
2939 3072 6.973843 TCATGGTCATCAGAAAAACAAGAAG 58.026 36.000 0.00 0.00 0.00 2.85
2971 3104 9.389755 TCATGGAAATTAAGTATGAAACGATGA 57.610 29.630 0.00 0.00 0.00 2.92
2975 3108 9.840427 ACTTTCATGGAAATTAAGTATGAAACG 57.160 29.630 7.78 7.39 33.81 3.60
2982 3115 9.802039 AGTACCAACTTTCATGGAAATTAAGTA 57.198 29.630 0.00 0.00 40.56 2.24
3000 3133 4.886496 AGTAAACAGAGGGAGTACCAAC 57.114 45.455 0.00 0.00 43.89 3.77
3004 3137 7.930325 ACTTACAAAAGTAAACAGAGGGAGTAC 59.070 37.037 0.00 0.00 44.26 2.73
3011 3144 9.845305 CTAAACGACTTACAAAAGTAAACAGAG 57.155 33.333 0.00 0.00 46.09 3.35
3012 3145 9.585099 TCTAAACGACTTACAAAAGTAAACAGA 57.415 29.630 0.00 0.00 46.09 3.41
3013 3146 9.628983 GTCTAAACGACTTACAAAAGTAAACAG 57.371 33.333 0.00 0.00 46.09 3.16
3015 3148 9.628983 CTGTCTAAACGACTTACAAAAGTAAAC 57.371 33.333 0.00 0.00 46.09 2.01
3020 3153 6.200286 TCAGCTGTCTAAACGACTTACAAAAG 59.800 38.462 14.67 0.00 43.25 2.27
3022 3155 5.593968 TCAGCTGTCTAAACGACTTACAAA 58.406 37.500 14.67 0.00 43.25 2.83
3023 3156 5.190992 TCAGCTGTCTAAACGACTTACAA 57.809 39.130 14.67 0.00 43.25 2.41
3024 3157 4.841443 TCAGCTGTCTAAACGACTTACA 57.159 40.909 14.67 0.00 43.25 2.41
3025 3158 6.707599 ATTTCAGCTGTCTAAACGACTTAC 57.292 37.500 14.67 0.00 43.25 2.34
3026 3159 6.926826 TCAATTTCAGCTGTCTAAACGACTTA 59.073 34.615 14.67 0.00 43.25 2.24
3027 3160 5.758296 TCAATTTCAGCTGTCTAAACGACTT 59.242 36.000 14.67 0.00 43.25 3.01
3028 3161 5.297547 TCAATTTCAGCTGTCTAAACGACT 58.702 37.500 14.67 0.00 43.25 4.18
3029 3162 5.591643 TCAATTTCAGCTGTCTAAACGAC 57.408 39.130 14.67 0.00 43.14 4.34
3030 3163 5.758296 AGTTCAATTTCAGCTGTCTAAACGA 59.242 36.000 14.67 5.12 0.00 3.85
3031 3164 5.848036 CAGTTCAATTTCAGCTGTCTAAACG 59.152 40.000 14.67 2.87 0.00 3.60
3032 3165 6.729187 ACAGTTCAATTTCAGCTGTCTAAAC 58.271 36.000 14.67 11.49 35.78 2.01
3033 3166 6.942532 ACAGTTCAATTTCAGCTGTCTAAA 57.057 33.333 14.67 7.59 35.78 1.85
3034 3167 6.942532 AACAGTTCAATTTCAGCTGTCTAA 57.057 33.333 14.67 7.33 39.19 2.10
3035 3168 6.942532 AAACAGTTCAATTTCAGCTGTCTA 57.057 33.333 14.67 0.36 39.19 2.59
3036 3169 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
3037 3170 7.417612 TCTAAAACAGTTCAATTTCAGCTGTC 58.582 34.615 14.67 0.00 39.19 3.51
3038 3171 7.333528 TCTAAAACAGTTCAATTTCAGCTGT 57.666 32.000 14.67 0.00 41.51 4.40
3039 3172 7.148853 GCATCTAAAACAGTTCAATTTCAGCTG 60.149 37.037 7.63 7.63 0.00 4.24
3040 3173 6.865205 GCATCTAAAACAGTTCAATTTCAGCT 59.135 34.615 0.00 0.00 0.00 4.24
3041 3174 6.865205 AGCATCTAAAACAGTTCAATTTCAGC 59.135 34.615 0.00 0.00 0.00 4.26
3042 3175 7.864379 ACAGCATCTAAAACAGTTCAATTTCAG 59.136 33.333 0.00 0.00 0.00 3.02
3043 3176 7.715657 ACAGCATCTAAAACAGTTCAATTTCA 58.284 30.769 0.00 0.00 0.00 2.69
3044 3177 8.078596 AGACAGCATCTAAAACAGTTCAATTTC 58.921 33.333 0.00 0.00 35.15 2.17
3045 3178 7.945134 AGACAGCATCTAAAACAGTTCAATTT 58.055 30.769 0.00 0.00 35.15 1.82
3046 3179 7.516198 AGACAGCATCTAAAACAGTTCAATT 57.484 32.000 0.00 0.00 35.15 2.32
3047 3180 7.516198 AAGACAGCATCTAAAACAGTTCAAT 57.484 32.000 0.00 0.00 36.27 2.57
3048 3181 6.942532 AAGACAGCATCTAAAACAGTTCAA 57.057 33.333 0.00 0.00 36.27 2.69
3049 3182 8.445275 TTTAAGACAGCATCTAAAACAGTTCA 57.555 30.769 0.00 0.00 36.27 3.18
3050 3183 9.334693 CATTTAAGACAGCATCTAAAACAGTTC 57.665 33.333 0.00 0.00 36.27 3.01
3051 3184 8.850156 ACATTTAAGACAGCATCTAAAACAGTT 58.150 29.630 0.00 0.00 36.27 3.16
3052 3185 8.396272 ACATTTAAGACAGCATCTAAAACAGT 57.604 30.769 0.00 0.00 36.27 3.55
3053 3186 9.683069 AAACATTTAAGACAGCATCTAAAACAG 57.317 29.630 0.00 0.00 36.27 3.16
3060 3193 8.860088 ACCTTTTAAACATTTAAGACAGCATCT 58.140 29.630 0.00 0.00 40.46 2.90
3061 3194 9.129209 GACCTTTTAAACATTTAAGACAGCATC 57.871 33.333 0.00 0.00 34.45 3.91
3062 3195 8.860088 AGACCTTTTAAACATTTAAGACAGCAT 58.140 29.630 0.00 0.00 34.45 3.79
3063 3196 8.232913 AGACCTTTTAAACATTTAAGACAGCA 57.767 30.769 0.00 0.00 34.45 4.41
3092 3225 9.397280 GCAGGAGGATAAAATACTACTTTCTTT 57.603 33.333 0.00 0.00 29.39 2.52
3093 3226 8.548877 TGCAGGAGGATAAAATACTACTTTCTT 58.451 33.333 0.00 0.00 29.39 2.52
3094 3227 8.090788 TGCAGGAGGATAAAATACTACTTTCT 57.909 34.615 0.00 0.00 29.39 2.52
3095 3228 8.732746 TTGCAGGAGGATAAAATACTACTTTC 57.267 34.615 0.00 0.00 29.39 2.62
3096 3229 9.700831 AATTGCAGGAGGATAAAATACTACTTT 57.299 29.630 0.00 0.00 29.39 2.66
3097 3230 9.700831 AAATTGCAGGAGGATAAAATACTACTT 57.299 29.630 0.00 0.00 29.39 2.24
3098 3231 9.125026 CAAATTGCAGGAGGATAAAATACTACT 57.875 33.333 0.00 0.00 33.40 2.57
3099 3232 8.352942 CCAAATTGCAGGAGGATAAAATACTAC 58.647 37.037 0.00 0.00 0.00 2.73
3113 3246 2.665165 ACAGTTGACCAAATTGCAGGA 58.335 42.857 0.00 0.00 0.00 3.86
3165 3298 7.867403 TCAAACTTTTAAGAGCAAATGGATCAC 59.133 33.333 0.00 0.00 33.23 3.06
3180 3313 3.490078 CCGTTGCAGCCTCAAACTTTTAA 60.490 43.478 0.00 0.00 0.00 1.52
3249 3382 8.028938 ACTAATTTGTGCATTCAAGGTGTATTC 58.971 33.333 0.00 0.00 0.00 1.75
3260 3393 5.942872 ACAGCAGTACTAATTTGTGCATTC 58.057 37.500 10.31 0.15 36.57 2.67
3293 3436 2.753452 TCCAGAGCCACTTAACTCGTAG 59.247 50.000 0.00 0.00 37.99 3.51
3294 3437 2.490903 GTCCAGAGCCACTTAACTCGTA 59.509 50.000 0.00 0.00 37.99 3.43
3296 3439 1.272490 TGTCCAGAGCCACTTAACTCG 59.728 52.381 0.00 0.00 37.99 4.18
3297 3440 3.067833 GTTGTCCAGAGCCACTTAACTC 58.932 50.000 0.00 0.00 0.00 3.01
3298 3441 2.548067 CGTTGTCCAGAGCCACTTAACT 60.548 50.000 0.00 0.00 0.00 2.24
3299 3442 1.798813 CGTTGTCCAGAGCCACTTAAC 59.201 52.381 0.00 0.00 0.00 2.01
3300 3443 1.270625 CCGTTGTCCAGAGCCACTTAA 60.271 52.381 0.00 0.00 0.00 1.85
3302 3445 1.071471 CCGTTGTCCAGAGCCACTT 59.929 57.895 0.00 0.00 0.00 3.16
3303 3446 2.100879 GACCGTTGTCCAGAGCCACT 62.101 60.000 0.00 0.00 35.34 4.00
3358 3501 3.665745 ACTGCTAAAAGTGGCAAATGG 57.334 42.857 0.00 0.00 41.20 3.16
3416 3559 5.008712 CCAGGGAGTAGTCAAGTTTCAAAAC 59.991 44.000 0.00 0.00 39.17 2.43
3435 3578 2.616510 CCAAAGCAAGAGTACTCCAGGG 60.617 54.545 19.38 7.67 0.00 4.45
3470 3613 3.166679 AGTGAAGGTCCAAGAGGAGTAC 58.833 50.000 0.00 0.00 46.92 2.73
3471 3614 3.544698 AGTGAAGGTCCAAGAGGAGTA 57.455 47.619 0.00 0.00 46.92 2.59
3472 3615 2.370189 CAAGTGAAGGTCCAAGAGGAGT 59.630 50.000 0.00 0.00 46.92 3.85
3481 3624 2.070262 GCATTTGCAAGTGAAGGTCC 57.930 50.000 24.46 2.93 41.59 4.46
3502 3653 4.080919 TGCCTCAATAACATCAGTAGCAGT 60.081 41.667 0.00 0.00 0.00 4.40
3504 3655 4.486125 TGCCTCAATAACATCAGTAGCA 57.514 40.909 0.00 0.00 0.00 3.49
3509 3660 9.459640 CATCTTAATTTGCCTCAATAACATCAG 57.540 33.333 0.00 0.00 0.00 2.90
3514 3665 8.225603 TCTCCATCTTAATTTGCCTCAATAAC 57.774 34.615 0.00 0.00 0.00 1.89
3515 3666 9.425248 AATCTCCATCTTAATTTGCCTCAATAA 57.575 29.630 0.00 0.00 0.00 1.40
3516 3667 9.425248 AAATCTCCATCTTAATTTGCCTCAATA 57.575 29.630 0.00 0.00 0.00 1.90
3517 3668 7.909485 AATCTCCATCTTAATTTGCCTCAAT 57.091 32.000 0.00 0.00 0.00 2.57
3518 3669 7.396907 TGAAATCTCCATCTTAATTTGCCTCAA 59.603 33.333 0.00 0.00 0.00 3.02
3520 3671 7.338800 TGAAATCTCCATCTTAATTTGCCTC 57.661 36.000 0.00 0.00 0.00 4.70
3543 3709 3.308438 AAGCTATTTTGTTGCTGCCTG 57.692 42.857 0.00 0.00 38.91 4.85
3556 3722 4.740902 AGAGGAACCAACCAAAAGCTATT 58.259 39.130 0.00 0.00 0.00 1.73
3560 3726 2.294512 CAGAGAGGAACCAACCAAAAGC 59.705 50.000 0.00 0.00 0.00 3.51
3561 3727 2.887152 CCAGAGAGGAACCAACCAAAAG 59.113 50.000 0.00 0.00 41.22 2.27
3564 3730 1.814429 TCCAGAGAGGAACCAACCAA 58.186 50.000 0.00 0.00 45.65 3.67
3565 3731 3.569827 TCCAGAGAGGAACCAACCA 57.430 52.632 0.00 0.00 45.65 3.67
3592 3758 2.563471 AACGAATCAGTAGACGCTCC 57.437 50.000 0.00 0.00 0.00 4.70
3597 3763 4.091509 ACGCATGAAAACGAATCAGTAGAC 59.908 41.667 0.00 0.00 0.00 2.59
3598 3764 4.242475 ACGCATGAAAACGAATCAGTAGA 58.758 39.130 0.00 0.00 0.00 2.59
3602 3768 4.218265 TCAAACGCATGAAAACGAATCAG 58.782 39.130 0.00 0.00 0.00 2.90
3608 3774 2.470628 TGCAATCAAACGCATGAAAACG 59.529 40.909 0.00 0.00 31.95 3.60
3609 3775 3.120923 CCTGCAATCAAACGCATGAAAAC 60.121 43.478 0.00 0.00 37.54 2.43
3618 3784 2.141122 AACCGCCCTGCAATCAAACG 62.141 55.000 0.00 0.00 0.00 3.60
4309 4490 0.829602 GGAGATGGATGCGGAGGAGA 60.830 60.000 0.00 0.00 0.00 3.71
4324 4505 1.005394 GGAGTTTCAACGGCGGAGA 60.005 57.895 13.24 5.52 0.00 3.71
4343 4524 2.472695 TGCCGGATAATCAGTATGGC 57.527 50.000 5.05 0.00 41.33 4.40
4346 4527 8.635765 ACAATTTATTGCCGGATAATCAGTAT 57.364 30.769 5.05 0.00 41.38 2.12
4355 4536 6.655003 CACTATCCTACAATTTATTGCCGGAT 59.345 38.462 20.46 20.46 44.81 4.18
4379 4560 7.458397 AGTAAAAGATCATCCAAGTTGTACCA 58.542 34.615 1.45 0.00 0.00 3.25
4380 4561 7.923414 AGTAAAAGATCATCCAAGTTGTACC 57.077 36.000 1.45 0.00 0.00 3.34
4383 4564 8.598041 AGAGTAGTAAAAGATCATCCAAGTTGT 58.402 33.333 1.45 0.00 0.00 3.32
4454 4658 1.688735 GCAAGCTTGAGAAAAGGGGTT 59.311 47.619 30.39 0.00 0.00 4.11
4464 4668 2.227388 AGAATGAAACCGCAAGCTTGAG 59.773 45.455 30.39 25.94 0.00 3.02
4483 4687 3.456365 GCAGAGCGAGGGCAGAGA 61.456 66.667 0.00 0.00 43.41 3.10
4493 4697 1.516821 GTCAGAGCAGAGCAGAGCG 60.517 63.158 0.00 0.00 35.48 5.03
4494 4698 0.458889 CAGTCAGAGCAGAGCAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
4496 4700 1.625511 TTCAGTCAGAGCAGAGCAGA 58.374 50.000 0.00 0.00 0.00 4.26
4497 4701 2.452295 TTTCAGTCAGAGCAGAGCAG 57.548 50.000 0.00 0.00 0.00 4.24
4498 4702 2.696506 CATTTCAGTCAGAGCAGAGCA 58.303 47.619 0.00 0.00 0.00 4.26
4499 4703 1.397692 GCATTTCAGTCAGAGCAGAGC 59.602 52.381 0.00 0.00 0.00 4.09
4500 4704 2.008329 GGCATTTCAGTCAGAGCAGAG 58.992 52.381 0.00 0.00 0.00 3.35
4578 4832 6.154706 AGTCGCTTCCCTTCTCTAAATCTAAA 59.845 38.462 0.00 0.00 0.00 1.85
4621 4875 3.225940 CAAAGTTGCTTCCTTTCTCCCT 58.774 45.455 0.00 0.00 29.89 4.20
4661 4915 5.393569 CCGGATTATATGCTCTAGACACTGG 60.394 48.000 0.00 0.00 0.00 4.00
4662 4916 5.393569 CCCGGATTATATGCTCTAGACACTG 60.394 48.000 0.73 0.00 0.00 3.66
4664 4918 4.705507 TCCCGGATTATATGCTCTAGACAC 59.294 45.833 0.73 0.00 0.00 3.67
4777 5036 3.436470 CCCAAATCCCTATCCAAACGGAT 60.436 47.826 0.00 0.00 45.62 4.18
5018 5293 0.696501 GGCCCTAACCCAACTCAAGA 59.303 55.000 0.00 0.00 0.00 3.02
5076 5357 6.445139 TGAAGAAGAAAGGAGGATACCAGATT 59.555 38.462 0.00 0.00 37.17 2.40
5083 5364 6.272324 TCTGGTTTGAAGAAGAAAGGAGGATA 59.728 38.462 0.00 0.00 0.00 2.59
5134 5421 4.980573 AGATTAGAGGCTAGACACGAGAT 58.019 43.478 0.00 0.00 0.00 2.75
5252 5539 5.129485 TGCAAGTTTTGGTATTGGGAAGAAA 59.871 36.000 0.00 0.00 0.00 2.52
5309 5597 7.817962 GGTTTGTGCTCTAGATTTGACTAGTTA 59.182 37.037 0.00 0.00 40.26 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.