Multiple sequence alignment - TraesCS7A01G523800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G523800 chr7A 100.000 4129 0 0 1 4129 706346809 706342681 0.000000e+00 7625.0
1 TraesCS7A01G523800 chr7A 88.499 913 101 2 2229 3138 712338427 712339338 0.000000e+00 1101.0
2 TraesCS7A01G523800 chr7A 90.000 300 15 4 3844 4129 380514112 380514410 1.400000e-99 374.0
3 TraesCS7A01G523800 chr7A 84.795 342 41 5 962 1296 712327618 712327955 2.380000e-87 333.0
4 TraesCS7A01G523800 chr7A 85.813 289 38 3 1708 1995 712328848 712328562 1.870000e-78 303.0
5 TraesCS7A01G523800 chr7D 91.673 1261 89 9 2229 3481 614276572 614275320 0.000000e+00 1733.0
6 TraesCS7A01G523800 chr7D 87.512 1073 93 17 934 1995 614277842 614276800 0.000000e+00 1201.0
7 TraesCS7A01G523800 chr7D 85.920 902 81 21 1 892 614278903 614278038 0.000000e+00 920.0
8 TraesCS7A01G523800 chr7D 88.667 300 17 7 3844 4129 16201170 16200874 2.360000e-92 350.0
9 TraesCS7A01G523800 chr7D 90.500 200 6 7 3568 3764 614275310 614275121 6.850000e-63 252.0
10 TraesCS7A01G523800 chr7D 88.060 201 8 2 3943 4129 21711568 21711766 1.490000e-54 224.0
11 TraesCS7A01G523800 chr7D 98.780 82 1 0 3758 3839 614269162 614269081 3.330000e-31 147.0
12 TraesCS7A01G523800 chr7B 90.739 1015 84 4 2229 3233 706108309 706107295 0.000000e+00 1345.0
13 TraesCS7A01G523800 chr7B 88.389 1111 114 10 2229 3331 706160818 706159715 0.000000e+00 1323.0
14 TraesCS7A01G523800 chr7B 90.367 1007 93 2 2229 3232 706060573 706059568 0.000000e+00 1319.0
15 TraesCS7A01G523800 chr7B 90.397 781 34 24 3094 3844 706189434 706190203 0.000000e+00 989.0
16 TraesCS7A01G523800 chr7B 91.081 583 46 6 2710 3291 706135279 706134702 0.000000e+00 784.0
17 TraesCS7A01G523800 chr7B 88.735 648 28 22 3216 3844 706059365 706058744 0.000000e+00 750.0
18 TraesCS7A01G523800 chr7B 83.816 760 87 14 1 742 706072452 706071711 0.000000e+00 689.0
19 TraesCS7A01G523800 chr7B 87.776 589 53 6 1408 1996 706161575 706161006 0.000000e+00 671.0
20 TraesCS7A01G523800 chr7B 89.094 541 47 7 940 1475 706109917 706109384 0.000000e+00 662.0
21 TraesCS7A01G523800 chr7B 88.719 523 51 5 1471 1992 706108963 706108448 2.090000e-177 632.0
22 TraesCS7A01G523800 chr7B 87.659 551 56 4 2600 3138 713117955 713118505 7.530000e-177 630.0
23 TraesCS7A01G523800 chr7B 87.713 529 44 11 1126 1653 706061193 706060685 7.640000e-167 597.0
24 TraesCS7A01G523800 chr7B 87.942 481 56 2 2229 2708 706155588 706155109 2.150000e-157 566.0
25 TraesCS7A01G523800 chr7B 88.060 469 45 6 2646 3111 706188935 706189395 2.810000e-151 545.0
26 TraesCS7A01G523800 chr7B 92.537 335 23 2 965 1298 706161975 706161642 2.890000e-131 479.0
27 TraesCS7A01G523800 chr7B 90.759 303 28 0 955 1257 706070718 706070416 4.970000e-109 405.0
28 TraesCS7A01G523800 chr7B 90.333 300 15 1 3844 4129 484632835 484632536 8.380000e-102 381.0
29 TraesCS7A01G523800 chr7B 93.173 249 8 5 3392 3635 706134209 706133965 1.410000e-94 357.0
30 TraesCS7A01G523800 chr7B 90.805 261 17 3 3300 3558 706107302 706107047 3.950000e-90 342.0
31 TraesCS7A01G523800 chr7B 88.889 270 30 0 1726 1995 706062199 706061930 2.380000e-87 333.0
32 TraesCS7A01G523800 chr7B 90.717 237 17 4 1391 1622 706063583 706063347 1.110000e-80 311.0
33 TraesCS7A01G523800 chr7B 84.138 290 42 4 1705 1992 713116868 713117155 1.130000e-70 278.0
34 TraesCS7A01G523800 chr7B 87.556 225 12 11 3635 3843 706106937 706106713 3.190000e-61 246.0
35 TraesCS7A01G523800 chr7B 92.105 152 11 1 2413 2563 706188735 706188886 3.230000e-51 213.0
36 TraesCS7A01G523800 chr7B 84.000 200 15 10 3657 3844 706133843 706133649 4.240000e-40 176.0
37 TraesCS7A01G523800 chr7B 83.221 149 14 7 762 899 706162304 706162156 4.330000e-25 126.0
38 TraesCS7A01G523800 chr7B 84.762 105 16 0 788 892 706110187 706110083 5.650000e-19 106.0
39 TraesCS7A01G523800 chr7B 80.392 102 13 6 760 859 713110089 713110185 2.060000e-08 71.3
40 TraesCS7A01G523800 chr7B 97.500 40 1 0 1259 1298 706063658 706063619 7.410000e-08 69.4
41 TraesCS7A01G523800 chr7B 100.000 32 0 0 933 964 706071317 706071286 4.460000e-05 60.2
42 TraesCS7A01G523800 chr2A 86.966 468 18 17 3394 3842 86676805 86676362 1.730000e-133 486.0
43 TraesCS7A01G523800 chr2A 90.000 300 14 3 3844 4129 360866921 360867218 1.400000e-99 374.0
44 TraesCS7A01G523800 chr4D 90.667 300 14 1 3844 4129 297380802 297381101 1.800000e-103 387.0
45 TraesCS7A01G523800 chr6B 90.333 300 15 1 3844 4129 705856115 705855816 8.380000e-102 381.0
46 TraesCS7A01G523800 chr3B 90.572 297 14 3 3847 4129 819297669 819297373 8.380000e-102 381.0
47 TraesCS7A01G523800 chr1A 90.268 298 14 2 3844 4127 27314412 27314116 3.900000e-100 375.0
48 TraesCS7A01G523800 chr3D 90.000 300 15 2 3844 4129 584687269 584687567 1.400000e-99 374.0
49 TraesCS7A01G523800 chr3D 89.333 300 16 2 3844 4129 74319593 74319296 3.030000e-96 363.0
50 TraesCS7A01G523800 chr1B 90.000 300 15 2 3844 4129 194779727 194780025 1.400000e-99 374.0
51 TraesCS7A01G523800 chr5D 89.667 300 17 1 3844 4129 310556590 310556889 1.810000e-98 370.0
52 TraesCS7A01G523800 chrUn 88.667 300 19 2 3844 4129 349629131 349628833 6.570000e-93 351.0
53 TraesCS7A01G523800 chrUn 88.333 300 20 2 3844 4129 290538151 290538449 3.060000e-91 346.0
54 TraesCS7A01G523800 chrUn 88.000 300 21 2 3844 4129 1371837 1371539 1.420000e-89 340.0
55 TraesCS7A01G523800 chr5B 85.385 130 17 2 2434 2562 636896364 636896492 2.590000e-27 134.0
56 TraesCS7A01G523800 chr6D 83.505 97 2 3 4047 4129 455128870 455128966 1.230000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G523800 chr7A 706342681 706346809 4128 True 7625.000000 7625 100.000000 1 4129 1 chr7A.!!$R1 4128
1 TraesCS7A01G523800 chr7A 712338427 712339338 911 False 1101.000000 1101 88.499000 2229 3138 1 chr7A.!!$F3 909
2 TraesCS7A01G523800 chr7D 614275121 614278903 3782 True 1026.500000 1733 88.901250 1 3764 4 chr7D.!!$R3 3763
3 TraesCS7A01G523800 chr7B 706159715 706162304 2589 True 649.750000 1323 87.980750 762 3331 4 chr7B.!!$R7 2569
4 TraesCS7A01G523800 chr7B 706188735 706190203 1468 False 582.333333 989 90.187333 2413 3844 3 chr7B.!!$F2 1431
5 TraesCS7A01G523800 chr7B 706058744 706063658 4914 True 563.233333 1319 90.653500 1126 3844 6 chr7B.!!$R3 2718
6 TraesCS7A01G523800 chr7B 706106713 706110187 3474 True 555.500000 1345 88.612500 788 3843 6 chr7B.!!$R5 3055
7 TraesCS7A01G523800 chr7B 713116868 713118505 1637 False 454.000000 630 85.898500 1705 3138 2 chr7B.!!$F3 1433
8 TraesCS7A01G523800 chr7B 706133649 706135279 1630 True 439.000000 784 89.418000 2710 3844 3 chr7B.!!$R6 1134
9 TraesCS7A01G523800 chr7B 706070416 706072452 2036 True 384.733333 689 91.525000 1 1257 3 chr7B.!!$R4 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 114 0.321671 GGCAAGGTCTCTACAGCACA 59.678 55.0 0.0 0.0 0.00 4.57 F
1694 4117 0.168788 CATTGACCCACACGCACATC 59.831 55.0 0.0 0.0 0.00 3.06 F
2174 5958 0.109086 CTGTCGCATGACCGAGACTT 60.109 55.0 0.0 0.0 44.86 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 4154 0.171903 CTCTGCAAAAGCCAATCCCG 59.828 55.0 0.00 0.0 0.00 5.14 R
2753 6826 0.106569 TATACGCCTCCCGACCAAGA 60.107 55.0 0.00 0.0 41.02 3.02 R
3944 8873 0.099968 GCGAGAGTGCACGGTACATA 59.900 55.0 12.01 0.0 34.15 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.395312 AACGGGAGAATGGTTGTCGT 59.605 50.000 0.00 0.00 0.00 4.34
61 62 0.698238 TACTGCCCTGTTCTTGCCAT 59.302 50.000 0.00 0.00 0.00 4.40
100 114 0.321671 GGCAAGGTCTCTACAGCACA 59.678 55.000 0.00 0.00 0.00 4.57
107 121 3.256136 AGGTCTCTACAGCACAGTACAAC 59.744 47.826 0.00 0.00 0.00 3.32
111 126 2.963101 TCTACAGCACAGTACAACACCT 59.037 45.455 0.00 0.00 0.00 4.00
135 150 1.002430 TGCAAGGCAAGGTCTCTACAG 59.998 52.381 0.00 0.00 34.76 2.74
138 153 1.577736 AGGCAAGGTCTCTACAGCAT 58.422 50.000 0.00 0.00 0.00 3.79
186 203 6.153340 CCTAATATGATTGGGTGGCCTAAATG 59.847 42.308 3.32 0.00 0.00 2.32
199 216 4.961730 TGGCCTAAATGCAAAGAATATGGT 59.038 37.500 3.32 0.00 0.00 3.55
231 248 2.027192 TCACGCAAGAAGCCCTAGAATT 60.027 45.455 0.00 0.00 41.38 2.17
233 250 3.010420 ACGCAAGAAGCCCTAGAATTTC 58.990 45.455 0.00 0.00 41.38 2.17
234 251 3.274288 CGCAAGAAGCCCTAGAATTTCT 58.726 45.455 4.03 4.03 41.38 2.52
235 252 3.691609 CGCAAGAAGCCCTAGAATTTCTT 59.308 43.478 3.86 8.57 39.69 2.52
236 253 4.156739 CGCAAGAAGCCCTAGAATTTCTTT 59.843 41.667 3.86 0.00 37.68 2.52
237 254 5.335976 CGCAAGAAGCCCTAGAATTTCTTTT 60.336 40.000 3.86 0.00 37.68 2.27
457 476 4.530710 ATCATGCAAGCTTTGTGAACAT 57.469 36.364 0.00 0.00 0.00 2.71
458 477 4.325028 TCATGCAAGCTTTGTGAACATT 57.675 36.364 0.00 0.00 0.00 2.71
555 576 5.879777 TGAGCATTTTCTAAATCCGTGATCA 59.120 36.000 0.00 0.00 0.00 2.92
556 577 6.037500 TGAGCATTTTCTAAATCCGTGATCAG 59.962 38.462 0.00 0.00 0.00 2.90
570 591 6.205784 TCCGTGATCAGTTTTTGAAATTCAC 58.794 36.000 0.00 0.00 38.83 3.18
574 595 8.114359 GTGATCAGTTTTTGAAATTCACGAAA 57.886 30.769 0.00 0.00 39.77 3.46
589 610 7.684062 ATTCACGAAAACTTTTGACTTCATG 57.316 32.000 0.00 0.00 0.00 3.07
593 614 5.866633 ACGAAAACTTTTGACTTCATGCAAA 59.133 32.000 0.00 0.00 32.63 3.68
671 692 1.549203 AGAGCACGCCATTTTGGAAT 58.451 45.000 0.00 0.00 40.96 3.01
672 693 2.722094 AGAGCACGCCATTTTGGAATA 58.278 42.857 0.00 0.00 40.96 1.75
673 694 3.290710 AGAGCACGCCATTTTGGAATAT 58.709 40.909 0.00 0.00 40.96 1.28
674 695 4.460263 AGAGCACGCCATTTTGGAATATA 58.540 39.130 0.00 0.00 40.96 0.86
675 696 5.072741 AGAGCACGCCATTTTGGAATATAT 58.927 37.500 0.00 0.00 40.96 0.86
703 724 1.961793 TGTAGGAAACGTGCTTTGCT 58.038 45.000 0.00 0.00 42.73 3.91
710 731 1.666209 AACGTGCTTTGCTTGTGCCT 61.666 50.000 0.00 0.00 38.71 4.75
747 787 2.202610 GGGCCGAAAAAGCGATGC 60.203 61.111 0.00 0.00 0.00 3.91
786 926 3.068590 TGAACGGACTTTTAACCTCGAGT 59.931 43.478 12.31 0.00 0.00 4.18
790 930 2.737252 GGACTTTTAACCTCGAGTGCAG 59.263 50.000 12.31 0.00 31.73 4.41
801 941 1.446272 GAGTGCAGGTGTACGAGGC 60.446 63.158 0.00 0.00 35.74 4.70
830 977 2.357517 CAAGAGTTCACGGCGGCT 60.358 61.111 13.24 3.30 0.00 5.52
879 1031 2.188994 GCTCATCGCCTTGGCTCT 59.811 61.111 10.12 0.00 0.00 4.09
881 1033 1.519246 CTCATCGCCTTGGCTCTGA 59.481 57.895 10.12 10.59 0.00 3.27
915 1215 0.322997 TAATTCAACCCGCCACCCAG 60.323 55.000 0.00 0.00 0.00 4.45
1311 2272 8.790674 CAACACGGTAATTCAATTAATTAACCG 58.209 33.333 22.88 22.88 46.43 4.44
1332 2293 2.128507 GTCCCCTCTCAGGTAGGCG 61.129 68.421 0.00 0.00 31.93 5.52
1385 2346 5.310451 TCTCCGTAATTTTGGCAAAGTACT 58.690 37.500 22.71 8.78 40.01 2.73
1386 2347 5.410439 TCTCCGTAATTTTGGCAAAGTACTC 59.590 40.000 22.71 11.54 40.01 2.59
1387 2348 4.456566 TCCGTAATTTTGGCAAAGTACTCC 59.543 41.667 22.71 0.00 40.01 3.85
1388 2349 4.457949 CCGTAATTTTGGCAAAGTACTCCT 59.542 41.667 22.71 7.67 40.01 3.69
1389 2350 5.644636 CCGTAATTTTGGCAAAGTACTCCTA 59.355 40.000 22.71 6.72 40.01 2.94
1390 2351 6.402875 CCGTAATTTTGGCAAAGTACTCCTAC 60.403 42.308 22.71 14.64 40.01 3.18
1402 2363 7.497249 GCAAAGTACTCCTACATGAGAAATCAT 59.503 37.037 0.00 0.00 36.22 2.45
1410 2380 5.410746 CCTACATGAGAAATCATCGGGATTG 59.589 44.000 0.00 0.00 45.46 2.67
1413 2383 5.653769 ACATGAGAAATCATCGGGATTGTTT 59.346 36.000 0.00 0.00 45.46 2.83
1443 2413 0.396435 TGCTCTGACATGGTTCGGTT 59.604 50.000 0.00 0.00 0.00 4.44
1475 2870 3.948719 GTGGTGGCCGACCCTCAA 61.949 66.667 18.24 1.13 45.45 3.02
1498 2893 0.752009 TTCCGGGAGATCCTGTCGAG 60.752 60.000 0.00 0.00 40.86 4.04
1660 4083 0.603569 GTGTCCGTCATGTCACTCCT 59.396 55.000 0.00 0.00 0.00 3.69
1694 4117 0.168788 CATTGACCCACACGCACATC 59.831 55.000 0.00 0.00 0.00 3.06
1695 4118 1.298157 ATTGACCCACACGCACATCG 61.298 55.000 0.00 0.00 45.38 3.84
1715 4154 5.511234 TCGTACTAACTTCCAGGCTAATC 57.489 43.478 0.00 0.00 0.00 1.75
1791 4231 0.678048 GTGCGAAGATGGGGAAGCTT 60.678 55.000 0.00 0.00 37.17 3.74
1800 4240 2.442830 GGGAAGCTTCATGGGGCC 60.443 66.667 27.02 14.28 0.00 5.80
1801 4241 2.442830 GGAAGCTTCATGGGGCCC 60.443 66.667 27.02 18.17 0.00 5.80
1843 4283 2.158623 TGTGTGGCCAGAGTTTCAGAAT 60.159 45.455 5.11 0.00 0.00 2.40
1846 4286 2.746362 GTGGCCAGAGTTTCAGAATCTG 59.254 50.000 5.11 3.38 40.13 2.90
1897 4337 0.322975 GGAGCAGCTTCAGTGAAGGA 59.677 55.000 29.45 0.00 39.76 3.36
1902 4342 2.225255 GCAGCTTCAGTGAAGGAAGAAC 59.775 50.000 29.45 14.58 43.46 3.01
1903 4343 3.470709 CAGCTTCAGTGAAGGAAGAACA 58.529 45.455 29.45 0.00 43.46 3.18
1933 4373 1.246649 TGCAATCGGAACAAGCACAT 58.753 45.000 0.00 0.00 0.00 3.21
1992 4432 4.081420 AGGTTACAGGTCAGCTCATACTTG 60.081 45.833 0.00 0.00 0.00 3.16
1995 4435 2.238144 ACAGGTCAGCTCATACTTGCAT 59.762 45.455 0.00 0.00 0.00 3.96
1997 4437 3.693085 CAGGTCAGCTCATACTTGCATTT 59.307 43.478 0.00 0.00 0.00 2.32
2002 4442 3.125829 CAGCTCATACTTGCATTTCGTGT 59.874 43.478 0.00 0.00 0.00 4.49
2004 4444 5.007039 CAGCTCATACTTGCATTTCGTGTAT 59.993 40.000 0.00 0.00 0.00 2.29
2006 4446 5.678483 GCTCATACTTGCATTTCGTGTATTG 59.322 40.000 0.00 0.00 0.00 1.90
2009 4449 2.819608 ACTTGCATTTCGTGTATTGCCT 59.180 40.909 0.00 0.00 34.20 4.75
2010 4450 2.917701 TGCATTTCGTGTATTGCCTG 57.082 45.000 0.00 0.00 34.20 4.85
2011 4451 2.431454 TGCATTTCGTGTATTGCCTGA 58.569 42.857 0.00 0.00 34.20 3.86
2012 4452 2.419673 TGCATTTCGTGTATTGCCTGAG 59.580 45.455 0.00 0.00 34.20 3.35
2015 5797 4.494199 GCATTTCGTGTATTGCCTGAGTAC 60.494 45.833 0.00 0.00 0.00 2.73
2023 5805 4.943093 TGTATTGCCTGAGTACACGTAGTA 59.057 41.667 0.00 0.00 41.61 1.82
2025 5807 3.063510 TGCCTGAGTACACGTAGTAGT 57.936 47.619 0.00 0.00 41.61 2.73
2036 5818 3.432252 ACACGTAGTAGTCTGCAATTTGC 59.568 43.478 14.49 14.49 41.61 3.68
2041 5825 5.577164 CGTAGTAGTCTGCAATTTGCTAACT 59.423 40.000 21.19 22.43 45.31 2.24
2042 5826 5.869753 AGTAGTCTGCAATTTGCTAACTG 57.130 39.130 25.92 12.65 45.31 3.16
2043 5827 4.697352 AGTAGTCTGCAATTTGCTAACTGG 59.303 41.667 25.92 11.37 45.31 4.00
2044 5828 3.754965 AGTCTGCAATTTGCTAACTGGA 58.245 40.909 21.19 7.90 45.31 3.86
2045 5829 4.338879 AGTCTGCAATTTGCTAACTGGAT 58.661 39.130 21.19 2.60 45.31 3.41
2046 5830 4.768968 AGTCTGCAATTTGCTAACTGGATT 59.231 37.500 21.19 5.47 45.31 3.01
2047 5831 4.860907 GTCTGCAATTTGCTAACTGGATTG 59.139 41.667 21.19 0.00 45.31 2.67
2049 5833 3.853475 GCAATTTGCTAACTGGATTGCT 58.147 40.909 14.11 0.00 45.45 3.91
2050 5834 4.997565 GCAATTTGCTAACTGGATTGCTA 58.002 39.130 14.11 0.00 45.45 3.49
2051 5835 5.410067 GCAATTTGCTAACTGGATTGCTAA 58.590 37.500 14.11 0.00 45.45 3.09
2052 5836 5.868801 GCAATTTGCTAACTGGATTGCTAAA 59.131 36.000 14.11 0.00 45.45 1.85
2053 5837 6.536224 GCAATTTGCTAACTGGATTGCTAAAT 59.464 34.615 14.11 0.00 45.45 1.40
2054 5838 7.064966 GCAATTTGCTAACTGGATTGCTAAATT 59.935 33.333 14.11 0.00 45.45 1.82
2055 5839 8.938906 CAATTTGCTAACTGGATTGCTAAATTT 58.061 29.630 0.00 0.00 31.17 1.82
2056 5840 8.707938 ATTTGCTAACTGGATTGCTAAATTTC 57.292 30.769 0.00 0.00 0.00 2.17
2057 5841 6.832520 TGCTAACTGGATTGCTAAATTTCA 57.167 33.333 0.00 0.00 0.00 2.69
2058 5842 6.855836 TGCTAACTGGATTGCTAAATTTCAG 58.144 36.000 0.00 0.00 35.37 3.02
2059 5843 6.434028 TGCTAACTGGATTGCTAAATTTCAGT 59.566 34.615 0.00 0.00 39.82 3.41
2060 5844 6.969473 GCTAACTGGATTGCTAAATTTCAGTC 59.031 38.462 6.84 1.64 38.49 3.51
2061 5845 5.551760 ACTGGATTGCTAAATTTCAGTCG 57.448 39.130 0.00 0.00 36.61 4.18
2062 5846 5.245531 ACTGGATTGCTAAATTTCAGTCGA 58.754 37.500 0.00 0.00 36.61 4.20
2063 5847 5.122396 ACTGGATTGCTAAATTTCAGTCGAC 59.878 40.000 7.70 7.70 36.61 4.20
2064 5848 5.000591 TGGATTGCTAAATTTCAGTCGACA 58.999 37.500 19.50 0.00 0.00 4.35
2065 5849 5.471797 TGGATTGCTAAATTTCAGTCGACAA 59.528 36.000 19.50 3.53 0.00 3.18
2066 5850 6.024049 GGATTGCTAAATTTCAGTCGACAAG 58.976 40.000 19.50 10.06 0.00 3.16
2067 5851 6.348540 GGATTGCTAAATTTCAGTCGACAAGT 60.349 38.462 19.50 0.00 0.00 3.16
2068 5852 5.591643 TGCTAAATTTCAGTCGACAAGTC 57.408 39.130 19.50 0.00 0.00 3.01
2069 5853 5.297547 TGCTAAATTTCAGTCGACAAGTCT 58.702 37.500 19.50 0.00 0.00 3.24
2070 5854 5.405571 TGCTAAATTTCAGTCGACAAGTCTC 59.594 40.000 19.50 0.00 0.00 3.36
2071 5855 4.974103 AAATTTCAGTCGACAAGTCTCG 57.026 40.909 19.50 0.00 34.83 4.04
2072 5856 2.417339 TTTCAGTCGACAAGTCTCGG 57.583 50.000 19.50 0.00 34.27 4.63
2073 5857 1.315690 TTCAGTCGACAAGTCTCGGT 58.684 50.000 19.50 0.00 34.27 4.69
2074 5858 0.873054 TCAGTCGACAAGTCTCGGTC 59.127 55.000 19.50 0.00 34.27 4.79
2080 5864 2.923605 GACAAGTCTCGGTCGATTCT 57.076 50.000 0.00 0.00 0.00 2.40
2082 5866 4.555348 GACAAGTCTCGGTCGATTCTAT 57.445 45.455 0.00 0.00 0.00 1.98
2083 5867 5.670149 GACAAGTCTCGGTCGATTCTATA 57.330 43.478 0.00 0.00 0.00 1.31
2084 5868 6.243811 GACAAGTCTCGGTCGATTCTATAT 57.756 41.667 0.00 0.00 0.00 0.86
2085 5869 6.636562 ACAAGTCTCGGTCGATTCTATATT 57.363 37.500 0.00 0.00 0.00 1.28
2086 5870 6.670233 ACAAGTCTCGGTCGATTCTATATTC 58.330 40.000 0.00 0.00 0.00 1.75
2087 5871 5.533533 AGTCTCGGTCGATTCTATATTCG 57.466 43.478 0.00 0.00 36.72 3.34
2088 5872 4.996122 AGTCTCGGTCGATTCTATATTCGT 59.004 41.667 0.00 0.00 36.74 3.85
2089 5873 5.080731 GTCTCGGTCGATTCTATATTCGTG 58.919 45.833 0.00 0.00 36.74 4.35
2090 5874 4.992951 TCTCGGTCGATTCTATATTCGTGA 59.007 41.667 0.00 0.00 36.74 4.35
2091 5875 5.120363 TCTCGGTCGATTCTATATTCGTGAG 59.880 44.000 0.00 0.00 36.74 3.51
2092 5876 4.992951 TCGGTCGATTCTATATTCGTGAGA 59.007 41.667 0.00 0.00 36.74 3.27
2093 5877 5.642491 TCGGTCGATTCTATATTCGTGAGAT 59.358 40.000 0.00 0.00 41.60 2.75
2094 5878 5.960683 CGGTCGATTCTATATTCGTGAGATC 59.039 44.000 0.00 0.00 41.60 2.75
2095 5879 6.402226 CGGTCGATTCTATATTCGTGAGATCA 60.402 42.308 0.00 0.00 41.60 2.92
2096 5880 7.476667 GGTCGATTCTATATTCGTGAGATCAT 58.523 38.462 0.00 0.00 41.60 2.45
2097 5881 8.613482 GGTCGATTCTATATTCGTGAGATCATA 58.387 37.037 0.00 0.00 41.60 2.15
2098 5882 9.428363 GTCGATTCTATATTCGTGAGATCATAC 57.572 37.037 0.00 0.00 41.60 2.39
2099 5883 8.328864 TCGATTCTATATTCGTGAGATCATACG 58.671 37.037 13.56 13.56 41.60 3.06
2100 5884 7.110903 CGATTCTATATTCGTGAGATCATACGC 59.889 40.741 14.58 3.25 41.60 4.42
2101 5885 5.796813 TCTATATTCGTGAGATCATACGCG 58.203 41.667 3.53 3.53 41.60 6.01
2102 5886 2.051879 ATTCGTGAGATCATACGCGG 57.948 50.000 12.47 0.00 41.60 6.46
2103 5887 1.018910 TTCGTGAGATCATACGCGGA 58.981 50.000 12.47 0.00 41.60 5.54
2104 5888 0.586802 TCGTGAGATCATACGCGGAG 59.413 55.000 12.47 0.00 39.94 4.63
2105 5889 0.586802 CGTGAGATCATACGCGGAGA 59.413 55.000 12.47 5.33 36.57 3.71
2106 5890 1.197949 CGTGAGATCATACGCGGAGAT 59.802 52.381 12.47 10.65 36.57 2.75
2107 5891 2.350868 CGTGAGATCATACGCGGAGATT 60.351 50.000 12.47 2.07 36.57 2.40
2108 5892 3.120304 CGTGAGATCATACGCGGAGATTA 60.120 47.826 12.47 0.00 36.57 1.75
2109 5893 4.612939 CGTGAGATCATACGCGGAGATTAA 60.613 45.833 12.47 0.00 36.57 1.40
2110 5894 5.403246 GTGAGATCATACGCGGAGATTAAT 58.597 41.667 12.47 1.34 0.00 1.40
2111 5895 5.287274 GTGAGATCATACGCGGAGATTAATG 59.713 44.000 12.47 0.00 0.00 1.90
2112 5896 4.177026 AGATCATACGCGGAGATTAATGC 58.823 43.478 12.47 0.00 0.00 3.56
2113 5897 3.378911 TCATACGCGGAGATTAATGCA 57.621 42.857 12.47 0.00 0.00 3.96
2114 5898 3.723260 TCATACGCGGAGATTAATGCAA 58.277 40.909 12.47 0.00 0.00 4.08
2115 5899 4.123506 TCATACGCGGAGATTAATGCAAA 58.876 39.130 12.47 0.00 0.00 3.68
2116 5900 4.211164 TCATACGCGGAGATTAATGCAAAG 59.789 41.667 12.47 0.00 0.00 2.77
2117 5901 2.627945 ACGCGGAGATTAATGCAAAGA 58.372 42.857 12.47 0.00 0.00 2.52
2118 5902 3.006940 ACGCGGAGATTAATGCAAAGAA 58.993 40.909 12.47 0.00 0.00 2.52
2119 5903 3.438781 ACGCGGAGATTAATGCAAAGAAA 59.561 39.130 12.47 0.00 0.00 2.52
2120 5904 4.083003 ACGCGGAGATTAATGCAAAGAAAA 60.083 37.500 12.47 0.00 0.00 2.29
2121 5905 4.856487 CGCGGAGATTAATGCAAAGAAAAA 59.144 37.500 0.00 0.00 0.00 1.94
2122 5906 5.516339 CGCGGAGATTAATGCAAAGAAAAAT 59.484 36.000 0.00 0.00 0.00 1.82
2123 5907 6.034898 CGCGGAGATTAATGCAAAGAAAAATT 59.965 34.615 0.00 0.00 0.00 1.82
2124 5908 7.219917 CGCGGAGATTAATGCAAAGAAAAATTA 59.780 33.333 0.00 0.00 0.00 1.40
2125 5909 8.868916 GCGGAGATTAATGCAAAGAAAAATTAA 58.131 29.630 0.00 0.00 0.00 1.40
2168 5952 5.651172 TTATATTTTCTGTCGCATGACCG 57.349 39.130 0.00 0.00 44.86 4.79
2169 5953 2.093306 ATTTTCTGTCGCATGACCGA 57.907 45.000 0.00 0.00 44.86 4.69
2170 5954 1.428448 TTTTCTGTCGCATGACCGAG 58.572 50.000 0.00 0.00 44.86 4.63
2171 5955 0.601057 TTTCTGTCGCATGACCGAGA 59.399 50.000 0.00 0.00 44.86 4.04
2172 5956 0.109272 TTCTGTCGCATGACCGAGAC 60.109 55.000 0.00 0.00 44.86 3.36
2173 5957 0.960861 TCTGTCGCATGACCGAGACT 60.961 55.000 0.00 0.00 44.86 3.24
2174 5958 0.109086 CTGTCGCATGACCGAGACTT 60.109 55.000 0.00 0.00 44.86 3.01
2175 5959 0.388520 TGTCGCATGACCGAGACTTG 60.389 55.000 0.00 0.00 44.86 3.16
2176 5960 1.078759 GTCGCATGACCGAGACTTGG 61.079 60.000 7.25 7.25 39.30 3.61
2177 5961 1.079819 CGCATGACCGAGACTTGGT 60.080 57.895 14.73 14.73 44.10 3.67
2178 5962 0.670546 CGCATGACCGAGACTTGGTT 60.671 55.000 15.92 0.00 40.63 3.67
2179 5963 1.403647 CGCATGACCGAGACTTGGTTA 60.404 52.381 15.92 12.24 40.63 2.85
2180 5964 2.695359 GCATGACCGAGACTTGGTTAA 58.305 47.619 15.92 8.10 40.63 2.01
2181 5965 2.673368 GCATGACCGAGACTTGGTTAAG 59.327 50.000 15.92 9.90 40.63 1.85
2192 5976 3.816994 ACTTGGTTAAGTCCCAGTCAAC 58.183 45.455 0.00 0.00 43.53 3.18
2193 5977 3.458487 ACTTGGTTAAGTCCCAGTCAACT 59.542 43.478 0.00 0.00 43.53 3.16
2194 5978 3.485463 TGGTTAAGTCCCAGTCAACTG 57.515 47.619 3.08 3.08 43.40 3.16
2195 5979 3.042682 TGGTTAAGTCCCAGTCAACTGA 58.957 45.455 11.70 0.00 46.59 3.41
2196 5980 3.071023 TGGTTAAGTCCCAGTCAACTGAG 59.929 47.826 11.70 0.00 46.59 3.35
2197 5981 3.323979 GGTTAAGTCCCAGTCAACTGAGA 59.676 47.826 11.70 0.69 46.59 3.27
2198 5982 4.020128 GGTTAAGTCCCAGTCAACTGAGAT 60.020 45.833 11.70 0.00 46.59 2.75
2199 5983 3.971245 AAGTCCCAGTCAACTGAGATC 57.029 47.619 11.70 0.06 46.59 2.75
2200 5984 3.182887 AGTCCCAGTCAACTGAGATCT 57.817 47.619 11.70 0.00 46.59 2.75
2201 5985 4.323569 AGTCCCAGTCAACTGAGATCTA 57.676 45.455 11.70 0.00 46.59 1.98
2202 5986 4.277476 AGTCCCAGTCAACTGAGATCTAG 58.723 47.826 11.70 0.00 46.59 2.43
2203 5987 4.020543 GTCCCAGTCAACTGAGATCTAGT 58.979 47.826 11.70 0.00 46.59 2.57
2204 5988 4.097286 GTCCCAGTCAACTGAGATCTAGTC 59.903 50.000 11.70 0.00 46.59 2.59
2205 5989 4.019858 CCCAGTCAACTGAGATCTAGTCA 58.980 47.826 11.70 0.00 46.59 3.41
2206 5990 4.142271 CCCAGTCAACTGAGATCTAGTCAC 60.142 50.000 11.70 1.71 46.59 3.67
2207 5991 4.460731 CCAGTCAACTGAGATCTAGTCACA 59.539 45.833 11.70 0.00 46.59 3.58
2208 5992 5.398169 CAGTCAACTGAGATCTAGTCACAC 58.602 45.833 4.05 0.00 46.59 3.82
2209 5993 4.461081 AGTCAACTGAGATCTAGTCACACC 59.539 45.833 0.00 0.00 0.00 4.16
2210 5994 3.764434 TCAACTGAGATCTAGTCACACCC 59.236 47.826 0.00 0.00 0.00 4.61
2211 5995 2.370349 ACTGAGATCTAGTCACACCCG 58.630 52.381 0.00 0.00 0.00 5.28
2212 5996 2.291024 ACTGAGATCTAGTCACACCCGT 60.291 50.000 0.00 0.00 0.00 5.28
2213 5997 2.755655 CTGAGATCTAGTCACACCCGTT 59.244 50.000 0.00 0.00 0.00 4.44
2214 5998 2.492088 TGAGATCTAGTCACACCCGTTG 59.508 50.000 0.00 0.00 0.00 4.10
2215 5999 2.492484 GAGATCTAGTCACACCCGTTGT 59.508 50.000 0.00 0.00 39.97 3.32
2216 6000 2.897969 AGATCTAGTCACACCCGTTGTT 59.102 45.455 0.00 0.00 35.67 2.83
2217 6001 4.084287 AGATCTAGTCACACCCGTTGTTA 58.916 43.478 0.00 0.00 35.67 2.41
2218 6002 4.525487 AGATCTAGTCACACCCGTTGTTAA 59.475 41.667 0.00 0.00 35.67 2.01
2219 6003 4.877378 TCTAGTCACACCCGTTGTTAAT 57.123 40.909 0.00 0.00 35.67 1.40
2220 6004 5.981088 TCTAGTCACACCCGTTGTTAATA 57.019 39.130 0.00 0.00 35.67 0.98
2221 6005 6.534475 TCTAGTCACACCCGTTGTTAATAT 57.466 37.500 0.00 0.00 35.67 1.28
2222 6006 6.938507 TCTAGTCACACCCGTTGTTAATATT 58.061 36.000 0.00 0.00 35.67 1.28
2223 6007 7.037438 TCTAGTCACACCCGTTGTTAATATTC 58.963 38.462 0.00 0.00 35.67 1.75
2224 6008 5.801380 AGTCACACCCGTTGTTAATATTCT 58.199 37.500 0.00 0.00 35.67 2.40
2225 6009 6.235664 AGTCACACCCGTTGTTAATATTCTT 58.764 36.000 0.00 0.00 35.67 2.52
2226 6010 7.388437 AGTCACACCCGTTGTTAATATTCTTA 58.612 34.615 0.00 0.00 35.67 2.10
2227 6011 8.044908 AGTCACACCCGTTGTTAATATTCTTAT 58.955 33.333 0.00 0.00 35.67 1.73
2257 6041 4.320608 TTCCTGCCAACAAAACTCAATC 57.679 40.909 0.00 0.00 0.00 2.67
2262 6046 3.629855 TGCCAACAAAACTCAATCGAAGA 59.370 39.130 0.00 0.00 45.75 2.87
2341 6125 2.049627 GAGGGCGATGAAGGATGGCT 62.050 60.000 0.00 0.00 36.12 4.75
2346 6130 1.610102 GCGATGAAGGATGGCTATGCT 60.610 52.381 0.00 0.00 36.43 3.79
2353 6137 1.561076 AGGATGGCTATGCTGACAACA 59.439 47.619 2.53 0.00 33.29 3.33
2423 6207 2.187946 CGGAAGCTCCAAGCCGAT 59.812 61.111 0.00 0.00 46.29 4.18
2432 6216 0.839277 TCCAAGCCGATGATGACCAT 59.161 50.000 0.00 0.00 38.43 3.55
2448 6232 2.877168 GACCATCGACGACATAGTAGGT 59.123 50.000 0.00 0.00 0.00 3.08
2580 6365 3.146847 GGTTCTTCGTGTCTTTGGGAAT 58.853 45.455 0.00 0.00 0.00 3.01
2589 6374 2.109128 TGTCTTTGGGAATAACCAGCCA 59.891 45.455 0.00 0.00 42.47 4.75
2660 6729 7.833183 AGAGAGAAGGTTATGCAATTTCTCATT 59.167 33.333 20.87 11.74 43.77 2.57
2668 6737 3.916761 TGCAATTTCTCATTGAGTTGCC 58.083 40.909 25.50 14.85 42.35 4.52
2683 6752 3.817647 GAGTTGCCACTCTGAATTTGTCT 59.182 43.478 10.60 0.00 45.54 3.41
2715 6787 2.170397 TCGGTGCAGGTGACAATGATAT 59.830 45.455 0.00 0.00 0.00 1.63
2750 6823 2.690840 AGGCTATACCCACCGATTCTT 58.309 47.619 0.00 0.00 40.58 2.52
2753 6826 3.071167 GGCTATACCCACCGATTCTTCTT 59.929 47.826 0.00 0.00 0.00 2.52
2773 6846 0.314302 CTTGGTCGGGAGGCGTATAG 59.686 60.000 0.00 0.00 33.19 1.31
2816 6889 1.006571 ATATCCAGCCGGCGTAACG 60.007 57.895 23.20 8.35 0.00 3.18
2945 7018 4.302509 TCGCCGGCGTTCTTTCCA 62.303 61.111 44.16 23.32 40.74 3.53
3336 8134 0.473755 AACACATCACTGGTGGAGCA 59.526 50.000 0.70 0.00 40.54 4.26
3344 8142 2.177950 CTGGTGGAGCAACATCAGC 58.822 57.895 7.82 0.00 42.11 4.26
3370 8168 2.807967 GGGCTGGAGCAAAAATGAAAAC 59.192 45.455 0.20 0.00 44.36 2.43
3470 8271 4.507710 CCAATATATGTGCCGATGCTACT 58.492 43.478 0.00 0.00 38.71 2.57
3533 8334 7.713750 ACTCGTTTTTATCTGCTGCTACTATA 58.286 34.615 0.00 0.00 0.00 1.31
3534 8335 8.195436 ACTCGTTTTTATCTGCTGCTACTATAA 58.805 33.333 0.00 0.00 0.00 0.98
3535 8336 9.197694 CTCGTTTTTATCTGCTGCTACTATAAT 57.802 33.333 0.00 0.00 0.00 1.28
3680 8593 3.742786 CAATACCGTTGATTGGTGAACG 58.257 45.455 0.00 0.00 43.24 3.95
3691 8604 6.236017 TGATTGGTGAACGACTTACAATTC 57.764 37.500 0.00 0.00 0.00 2.17
3846 8775 2.415426 GCTCCTCGCTAGAGTGGC 59.585 66.667 9.48 0.00 42.86 5.01
3847 8776 2.418910 GCTCCTCGCTAGAGTGGCA 61.419 63.158 9.48 0.00 42.86 4.92
3848 8777 1.949847 GCTCCTCGCTAGAGTGGCAA 61.950 60.000 9.48 0.00 42.86 4.52
3849 8778 0.179124 CTCCTCGCTAGAGTGGCAAC 60.179 60.000 9.48 0.00 42.86 4.17
3850 8779 0.898326 TCCTCGCTAGAGTGGCAACA 60.898 55.000 9.48 0.00 42.86 3.33
3862 8791 2.620251 TGGCAACATCTTCTATCCCG 57.380 50.000 0.00 0.00 46.17 5.14
3863 8792 1.837439 TGGCAACATCTTCTATCCCGT 59.163 47.619 0.00 0.00 46.17 5.28
3864 8793 2.238646 TGGCAACATCTTCTATCCCGTT 59.761 45.455 0.00 0.00 46.17 4.44
3865 8794 3.279434 GGCAACATCTTCTATCCCGTTT 58.721 45.455 0.00 0.00 0.00 3.60
3866 8795 3.065371 GGCAACATCTTCTATCCCGTTTG 59.935 47.826 0.00 0.00 0.00 2.93
3867 8796 3.065371 GCAACATCTTCTATCCCGTTTGG 59.935 47.826 0.00 0.00 0.00 3.28
3877 8806 2.855209 TCCCGTTTGGATTCGGTTAA 57.145 45.000 0.00 0.00 44.51 2.01
3878 8807 2.425539 TCCCGTTTGGATTCGGTTAAC 58.574 47.619 0.00 0.00 44.51 2.01
3879 8808 2.038820 TCCCGTTTGGATTCGGTTAACT 59.961 45.455 5.42 0.00 44.51 2.24
3880 8809 2.815503 CCCGTTTGGATTCGGTTAACTT 59.184 45.455 5.42 0.00 44.51 2.66
3881 8810 3.365565 CCCGTTTGGATTCGGTTAACTTG 60.366 47.826 5.42 0.00 44.51 3.16
3882 8811 3.499157 CCGTTTGGATTCGGTTAACTTGA 59.501 43.478 5.42 1.30 41.58 3.02
3883 8812 4.460505 CGTTTGGATTCGGTTAACTTGAC 58.539 43.478 5.42 0.00 0.00 3.18
3884 8813 4.024725 CGTTTGGATTCGGTTAACTTGACA 60.025 41.667 5.42 0.00 0.00 3.58
3885 8814 5.209977 GTTTGGATTCGGTTAACTTGACAC 58.790 41.667 5.42 1.67 0.00 3.67
3886 8815 4.074627 TGGATTCGGTTAACTTGACACA 57.925 40.909 5.42 1.32 0.00 3.72
3887 8816 4.452825 TGGATTCGGTTAACTTGACACAA 58.547 39.130 5.42 0.00 0.00 3.33
3888 8817 4.513692 TGGATTCGGTTAACTTGACACAAG 59.486 41.667 5.42 9.51 0.00 3.16
3889 8818 4.083484 GGATTCGGTTAACTTGACACAAGG 60.083 45.833 14.51 0.00 0.00 3.61
3890 8819 2.841215 TCGGTTAACTTGACACAAGGG 58.159 47.619 14.51 0.00 0.00 3.95
3891 8820 2.435069 TCGGTTAACTTGACACAAGGGA 59.565 45.455 14.51 1.16 0.00 4.20
3892 8821 2.806244 CGGTTAACTTGACACAAGGGAG 59.194 50.000 14.51 0.00 0.00 4.30
3893 8822 3.146847 GGTTAACTTGACACAAGGGAGG 58.853 50.000 14.51 0.00 0.00 4.30
3894 8823 3.146847 GTTAACTTGACACAAGGGAGGG 58.853 50.000 14.51 0.00 0.00 4.30
3895 8824 1.518367 AACTTGACACAAGGGAGGGA 58.482 50.000 14.51 0.00 0.00 4.20
3896 8825 1.747444 ACTTGACACAAGGGAGGGAT 58.253 50.000 14.51 0.00 0.00 3.85
3897 8826 1.352352 ACTTGACACAAGGGAGGGATG 59.648 52.381 14.51 0.00 0.00 3.51
3898 8827 1.352352 CTTGACACAAGGGAGGGATGT 59.648 52.381 0.00 0.00 0.00 3.06
3902 8831 2.292828 CACAAGGGAGGGATGTGTTT 57.707 50.000 0.00 0.00 39.60 2.83
3903 8832 2.162681 CACAAGGGAGGGATGTGTTTC 58.837 52.381 0.00 0.00 39.60 2.78
3904 8833 1.271379 ACAAGGGAGGGATGTGTTTCG 60.271 52.381 0.00 0.00 0.00 3.46
3905 8834 1.064825 AAGGGAGGGATGTGTTTCGT 58.935 50.000 0.00 0.00 0.00 3.85
3906 8835 1.064825 AGGGAGGGATGTGTTTCGTT 58.935 50.000 0.00 0.00 0.00 3.85
3907 8836 1.165270 GGGAGGGATGTGTTTCGTTG 58.835 55.000 0.00 0.00 0.00 4.10
3908 8837 1.165270 GGAGGGATGTGTTTCGTTGG 58.835 55.000 0.00 0.00 0.00 3.77
3909 8838 1.271163 GGAGGGATGTGTTTCGTTGGA 60.271 52.381 0.00 0.00 0.00 3.53
3910 8839 2.500229 GAGGGATGTGTTTCGTTGGAA 58.500 47.619 0.00 0.00 0.00 3.53
3911 8840 3.081804 GAGGGATGTGTTTCGTTGGAAT 58.918 45.455 0.00 0.00 30.88 3.01
3912 8841 3.081804 AGGGATGTGTTTCGTTGGAATC 58.918 45.455 0.00 0.00 30.88 2.52
3913 8842 3.081804 GGGATGTGTTTCGTTGGAATCT 58.918 45.455 0.00 0.00 30.88 2.40
3914 8843 3.127030 GGGATGTGTTTCGTTGGAATCTC 59.873 47.826 0.00 0.00 30.88 2.75
3915 8844 3.751175 GGATGTGTTTCGTTGGAATCTCA 59.249 43.478 0.00 0.00 32.85 3.27
3916 8845 4.378459 GGATGTGTTTCGTTGGAATCTCAC 60.378 45.833 0.00 0.00 31.77 3.51
3917 8846 3.804036 TGTGTTTCGTTGGAATCTCACT 58.196 40.909 0.00 0.00 33.70 3.41
3918 8847 4.951254 TGTGTTTCGTTGGAATCTCACTA 58.049 39.130 0.00 0.00 33.70 2.74
3919 8848 5.547465 TGTGTTTCGTTGGAATCTCACTAT 58.453 37.500 0.00 0.00 33.70 2.12
3920 8849 6.693466 TGTGTTTCGTTGGAATCTCACTATA 58.307 36.000 0.00 0.00 33.70 1.31
3921 8850 7.327975 TGTGTTTCGTTGGAATCTCACTATAT 58.672 34.615 0.00 0.00 33.70 0.86
3922 8851 7.491372 TGTGTTTCGTTGGAATCTCACTATATC 59.509 37.037 0.00 0.00 33.70 1.63
3923 8852 7.707035 GTGTTTCGTTGGAATCTCACTATATCT 59.293 37.037 0.00 0.00 31.84 1.98
3924 8853 7.706607 TGTTTCGTTGGAATCTCACTATATCTG 59.293 37.037 0.00 0.00 30.88 2.90
3925 8854 7.582667 TTCGTTGGAATCTCACTATATCTGA 57.417 36.000 0.00 0.00 0.00 3.27
3926 8855 7.582667 TCGTTGGAATCTCACTATATCTGAA 57.417 36.000 0.00 0.00 0.00 3.02
3927 8856 8.183104 TCGTTGGAATCTCACTATATCTGAAT 57.817 34.615 0.00 0.00 0.00 2.57
3928 8857 8.300286 TCGTTGGAATCTCACTATATCTGAATC 58.700 37.037 0.00 0.00 0.00 2.52
3929 8858 7.543868 CGTTGGAATCTCACTATATCTGAATCC 59.456 40.741 0.00 0.00 0.00 3.01
3930 8859 8.592809 GTTGGAATCTCACTATATCTGAATCCT 58.407 37.037 0.00 0.00 0.00 3.24
3931 8860 9.828691 TTGGAATCTCACTATATCTGAATCCTA 57.171 33.333 0.00 0.00 0.00 2.94
3932 8861 9.249053 TGGAATCTCACTATATCTGAATCCTAC 57.751 37.037 0.00 0.00 0.00 3.18
3933 8862 9.249053 GGAATCTCACTATATCTGAATCCTACA 57.751 37.037 0.00 0.00 0.00 2.74
3935 8864 9.593565 AATCTCACTATATCTGAATCCTACACA 57.406 33.333 0.00 0.00 0.00 3.72
3936 8865 8.628630 TCTCACTATATCTGAATCCTACACAG 57.371 38.462 0.00 0.00 0.00 3.66
3937 8866 8.221251 TCTCACTATATCTGAATCCTACACAGT 58.779 37.037 0.00 0.00 33.93 3.55
3938 8867 8.768501 TCACTATATCTGAATCCTACACAGTT 57.231 34.615 0.00 0.00 33.93 3.16
3939 8868 9.862149 TCACTATATCTGAATCCTACACAGTTA 57.138 33.333 0.00 0.00 33.93 2.24
3947 8876 9.653287 TCTGAATCCTACACAGTTAACTTTATG 57.347 33.333 5.07 7.50 33.93 1.90
3948 8877 9.436957 CTGAATCCTACACAGTTAACTTTATGT 57.563 33.333 16.90 16.90 0.00 2.29
3951 8880 9.662947 AATCCTACACAGTTAACTTTATGTACC 57.337 33.333 5.07 0.00 0.00 3.34
3952 8881 7.315142 TCCTACACAGTTAACTTTATGTACCG 58.685 38.462 5.07 6.46 0.00 4.02
3953 8882 7.039784 TCCTACACAGTTAACTTTATGTACCGT 60.040 37.037 5.07 0.00 0.00 4.83
3954 8883 6.774354 ACACAGTTAACTTTATGTACCGTG 57.226 37.500 5.07 9.99 0.00 4.94
3955 8884 5.178067 ACACAGTTAACTTTATGTACCGTGC 59.822 40.000 5.07 0.00 0.00 5.34
3956 8885 5.177881 CACAGTTAACTTTATGTACCGTGCA 59.822 40.000 5.07 0.00 0.00 4.57
3957 8886 5.178067 ACAGTTAACTTTATGTACCGTGCAC 59.822 40.000 6.82 6.82 0.00 4.57
3958 8887 5.407387 CAGTTAACTTTATGTACCGTGCACT 59.593 40.000 16.19 0.00 0.00 4.40
3959 8888 5.636543 AGTTAACTTTATGTACCGTGCACTC 59.363 40.000 16.19 3.44 0.00 3.51
3960 8889 3.955650 ACTTTATGTACCGTGCACTCT 57.044 42.857 16.19 1.55 0.00 3.24
3961 8890 3.846360 ACTTTATGTACCGTGCACTCTC 58.154 45.455 16.19 3.43 0.00 3.20
3962 8891 2.554806 TTATGTACCGTGCACTCTCG 57.445 50.000 16.19 0.67 0.00 4.04
3963 8892 0.099968 TATGTACCGTGCACTCTCGC 59.900 55.000 16.19 1.98 0.00 5.03
3964 8893 1.873270 ATGTACCGTGCACTCTCGCA 61.873 55.000 16.19 7.77 40.32 5.10
3970 8899 3.763671 TGCACTCTCGCACTCAGA 58.236 55.556 0.00 0.00 36.86 3.27
3971 8900 1.583477 TGCACTCTCGCACTCAGAG 59.417 57.895 0.00 0.00 42.84 3.35
3972 8901 1.153862 GCACTCTCGCACTCAGAGG 60.154 63.158 1.53 0.00 41.66 3.69
3973 8902 1.872197 GCACTCTCGCACTCAGAGGT 61.872 60.000 1.53 0.00 41.66 3.85
3974 8903 0.600557 CACTCTCGCACTCAGAGGTT 59.399 55.000 1.53 0.00 41.66 3.50
3975 8904 0.885196 ACTCTCGCACTCAGAGGTTC 59.115 55.000 1.53 0.00 41.66 3.62
3976 8905 0.172352 CTCTCGCACTCAGAGGTTCC 59.828 60.000 1.53 0.00 34.75 3.62
3977 8906 0.539669 TCTCGCACTCAGAGGTTCCA 60.540 55.000 1.53 0.00 36.45 3.53
3978 8907 0.534412 CTCGCACTCAGAGGTTCCAT 59.466 55.000 1.53 0.00 32.38 3.41
3979 8908 0.976641 TCGCACTCAGAGGTTCCATT 59.023 50.000 1.53 0.00 0.00 3.16
3980 8909 1.081892 CGCACTCAGAGGTTCCATTG 58.918 55.000 1.53 0.00 0.00 2.82
3981 8910 1.457346 GCACTCAGAGGTTCCATTGG 58.543 55.000 1.53 0.00 0.00 3.16
3982 8911 1.003580 GCACTCAGAGGTTCCATTGGA 59.996 52.381 0.00 0.00 0.00 3.53
3983 8912 2.356535 GCACTCAGAGGTTCCATTGGAT 60.357 50.000 6.15 0.00 0.00 3.41
3984 8913 3.118261 GCACTCAGAGGTTCCATTGGATA 60.118 47.826 6.15 0.00 0.00 2.59
3985 8914 4.626287 GCACTCAGAGGTTCCATTGGATAA 60.626 45.833 6.15 0.00 0.00 1.75
3986 8915 4.878397 CACTCAGAGGTTCCATTGGATAAC 59.122 45.833 6.15 2.45 0.00 1.89
3987 8916 4.122776 CTCAGAGGTTCCATTGGATAACG 58.877 47.826 6.15 0.00 0.00 3.18
3988 8917 3.772572 TCAGAGGTTCCATTGGATAACGA 59.227 43.478 6.15 0.00 0.00 3.85
3989 8918 4.408921 TCAGAGGTTCCATTGGATAACGAT 59.591 41.667 6.15 0.00 0.00 3.73
3990 8919 5.600898 TCAGAGGTTCCATTGGATAACGATA 59.399 40.000 6.15 0.00 0.00 2.92
3991 8920 6.099125 TCAGAGGTTCCATTGGATAACGATAA 59.901 38.462 6.15 0.00 0.00 1.75
3992 8921 6.765989 CAGAGGTTCCATTGGATAACGATAAA 59.234 38.462 6.15 0.00 0.00 1.40
3993 8922 6.766467 AGAGGTTCCATTGGATAACGATAAAC 59.234 38.462 6.15 0.00 0.00 2.01
3994 8923 6.659824 AGGTTCCATTGGATAACGATAAACT 58.340 36.000 6.15 0.00 0.00 2.66
3995 8924 7.798071 AGGTTCCATTGGATAACGATAAACTA 58.202 34.615 6.15 0.00 0.00 2.24
3996 8925 8.269317 AGGTTCCATTGGATAACGATAAACTAA 58.731 33.333 6.15 0.00 0.00 2.24
3997 8926 9.063615 GGTTCCATTGGATAACGATAAACTAAT 57.936 33.333 6.15 0.00 0.00 1.73
4018 8947 9.911788 ACTAATATGGAAATCAAAGATGTCACT 57.088 29.630 0.11 0.00 0.00 3.41
4049 8978 6.683974 AAGATTTTCATGTGGTATCTTCGG 57.316 37.500 0.00 0.00 31.74 4.30
4050 8979 5.989477 AGATTTTCATGTGGTATCTTCGGA 58.011 37.500 0.00 0.00 0.00 4.55
4051 8980 6.414732 AGATTTTCATGTGGTATCTTCGGAA 58.585 36.000 0.00 0.00 0.00 4.30
4052 8981 6.884295 AGATTTTCATGTGGTATCTTCGGAAA 59.116 34.615 0.00 0.00 0.00 3.13
4053 8982 6.494893 TTTTCATGTGGTATCTTCGGAAAG 57.505 37.500 0.00 0.00 0.00 2.62
4054 8983 4.137116 TCATGTGGTATCTTCGGAAAGG 57.863 45.455 0.00 0.00 33.03 3.11
4055 8984 3.772572 TCATGTGGTATCTTCGGAAAGGA 59.227 43.478 0.00 0.00 33.03 3.36
4056 8985 3.887621 TGTGGTATCTTCGGAAAGGAG 57.112 47.619 0.00 0.00 33.03 3.69
4057 8986 3.170717 TGTGGTATCTTCGGAAAGGAGT 58.829 45.455 0.00 0.00 33.03 3.85
4058 8987 3.581332 TGTGGTATCTTCGGAAAGGAGTT 59.419 43.478 0.00 0.00 33.03 3.01
4059 8988 3.933332 GTGGTATCTTCGGAAAGGAGTTG 59.067 47.826 0.00 0.00 33.03 3.16
4060 8989 3.581332 TGGTATCTTCGGAAAGGAGTTGT 59.419 43.478 0.00 0.00 33.03 3.32
4061 8990 3.933332 GGTATCTTCGGAAAGGAGTTGTG 59.067 47.826 0.00 0.00 33.03 3.33
4062 8991 1.878953 TCTTCGGAAAGGAGTTGTGC 58.121 50.000 0.00 0.00 33.03 4.57
4063 8992 1.416401 TCTTCGGAAAGGAGTTGTGCT 59.584 47.619 0.00 0.00 33.03 4.40
4064 8993 2.631062 TCTTCGGAAAGGAGTTGTGCTA 59.369 45.455 0.00 0.00 33.03 3.49
4065 8994 3.070446 TCTTCGGAAAGGAGTTGTGCTAA 59.930 43.478 0.00 0.00 33.03 3.09
4066 8995 3.040147 TCGGAAAGGAGTTGTGCTAAG 57.960 47.619 0.00 0.00 0.00 2.18
4067 8996 2.631062 TCGGAAAGGAGTTGTGCTAAGA 59.369 45.455 0.00 0.00 0.00 2.10
4068 8997 3.070446 TCGGAAAGGAGTTGTGCTAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
4069 8998 3.813166 CGGAAAGGAGTTGTGCTAAGAAA 59.187 43.478 0.00 0.00 0.00 2.52
4070 8999 4.274950 CGGAAAGGAGTTGTGCTAAGAAAA 59.725 41.667 0.00 0.00 0.00 2.29
4071 9000 5.560953 CGGAAAGGAGTTGTGCTAAGAAAAG 60.561 44.000 0.00 0.00 0.00 2.27
4072 9001 5.531287 GGAAAGGAGTTGTGCTAAGAAAAGA 59.469 40.000 0.00 0.00 0.00 2.52
4073 9002 6.378710 AAAGGAGTTGTGCTAAGAAAAGAC 57.621 37.500 0.00 0.00 0.00 3.01
4074 9003 5.036117 AGGAGTTGTGCTAAGAAAAGACA 57.964 39.130 0.00 0.00 0.00 3.41
4075 9004 5.437060 AGGAGTTGTGCTAAGAAAAGACAA 58.563 37.500 0.00 0.00 0.00 3.18
4076 9005 5.297029 AGGAGTTGTGCTAAGAAAAGACAAC 59.703 40.000 0.00 0.00 44.34 3.32
4077 9006 5.500645 AGTTGTGCTAAGAAAAGACAACC 57.499 39.130 0.00 0.00 44.85 3.77
4078 9007 5.193679 AGTTGTGCTAAGAAAAGACAACCT 58.806 37.500 0.00 0.00 44.85 3.50
4079 9008 5.297029 AGTTGTGCTAAGAAAAGACAACCTC 59.703 40.000 0.00 0.00 44.85 3.85
4080 9009 3.807622 TGTGCTAAGAAAAGACAACCTCG 59.192 43.478 0.00 0.00 0.00 4.63
4081 9010 2.806244 TGCTAAGAAAAGACAACCTCGC 59.194 45.455 0.00 0.00 0.00 5.03
4082 9011 3.067833 GCTAAGAAAAGACAACCTCGCT 58.932 45.455 0.00 0.00 0.00 4.93
4083 9012 3.123790 GCTAAGAAAAGACAACCTCGCTC 59.876 47.826 0.00 0.00 0.00 5.03
4084 9013 1.784525 AGAAAAGACAACCTCGCTCG 58.215 50.000 0.00 0.00 0.00 5.03
4085 9014 1.340248 AGAAAAGACAACCTCGCTCGA 59.660 47.619 0.00 0.00 0.00 4.04
4086 9015 1.456165 GAAAAGACAACCTCGCTCGAC 59.544 52.381 0.00 0.00 0.00 4.20
4087 9016 0.663568 AAAGACAACCTCGCTCGACG 60.664 55.000 0.00 0.00 45.62 5.12
4088 9017 3.173240 GACAACCTCGCTCGACGC 61.173 66.667 0.00 0.40 43.23 5.19
4089 9018 3.612371 GACAACCTCGCTCGACGCT 62.612 63.158 5.53 0.00 43.23 5.07
4090 9019 2.249557 GACAACCTCGCTCGACGCTA 62.250 60.000 5.53 0.00 43.23 4.26
4091 9020 1.154093 CAACCTCGCTCGACGCTAA 60.154 57.895 5.53 0.00 43.23 3.09
4092 9021 1.134530 CAACCTCGCTCGACGCTAAG 61.135 60.000 5.53 3.42 43.23 2.18
4093 9022 1.303799 AACCTCGCTCGACGCTAAGA 61.304 55.000 5.53 0.00 43.23 2.10
4094 9023 1.303799 ACCTCGCTCGACGCTAAGAA 61.304 55.000 5.53 0.00 43.23 2.52
4095 9024 0.590230 CCTCGCTCGACGCTAAGAAG 60.590 60.000 5.53 0.00 43.23 2.85
4096 9025 0.097325 CTCGCTCGACGCTAAGAAGT 59.903 55.000 5.53 0.00 43.23 3.01
4097 9026 0.179197 TCGCTCGACGCTAAGAAGTG 60.179 55.000 5.53 0.00 43.23 3.16
4099 9028 1.201998 CGCTCGACGCTAAGAAGTGTA 60.202 52.381 5.53 0.00 46.40 2.90
4100 9029 2.442424 GCTCGACGCTAAGAAGTGTAG 58.558 52.381 0.00 0.00 46.40 2.74
4101 9030 2.442424 CTCGACGCTAAGAAGTGTAGC 58.558 52.381 0.00 0.00 46.40 3.58
4102 9031 2.082231 TCGACGCTAAGAAGTGTAGCT 58.918 47.619 0.00 0.00 46.40 3.32
4103 9032 2.486982 TCGACGCTAAGAAGTGTAGCTT 59.513 45.455 0.00 0.00 46.40 3.74
4104 9033 3.057736 TCGACGCTAAGAAGTGTAGCTTT 60.058 43.478 0.00 0.00 46.40 3.51
4105 9034 3.673809 CGACGCTAAGAAGTGTAGCTTTT 59.326 43.478 0.00 0.00 46.40 2.27
4106 9035 4.433022 CGACGCTAAGAAGTGTAGCTTTTG 60.433 45.833 0.00 0.00 46.40 2.44
4107 9036 4.377897 ACGCTAAGAAGTGTAGCTTTTGT 58.622 39.130 0.00 0.00 44.62 2.83
4108 9037 5.535333 ACGCTAAGAAGTGTAGCTTTTGTA 58.465 37.500 0.00 0.00 44.62 2.41
4109 9038 5.404667 ACGCTAAGAAGTGTAGCTTTTGTAC 59.595 40.000 0.00 0.00 44.62 2.90
4110 9039 5.634020 CGCTAAGAAGTGTAGCTTTTGTACT 59.366 40.000 0.00 0.00 41.55 2.73
4111 9040 6.183359 CGCTAAGAAGTGTAGCTTTTGTACTC 60.183 42.308 0.00 0.00 41.55 2.59
4112 9041 6.645415 GCTAAGAAGTGTAGCTTTTGTACTCA 59.355 38.462 0.00 0.00 40.71 3.41
4113 9042 7.332182 GCTAAGAAGTGTAGCTTTTGTACTCAT 59.668 37.037 0.00 0.00 40.71 2.90
4114 9043 7.426929 AAGAAGTGTAGCTTTTGTACTCATG 57.573 36.000 0.00 0.00 37.59 3.07
4115 9044 6.759272 AGAAGTGTAGCTTTTGTACTCATGA 58.241 36.000 0.00 0.00 37.59 3.07
4116 9045 6.647067 AGAAGTGTAGCTTTTGTACTCATGAC 59.353 38.462 0.00 0.00 37.59 3.06
4117 9046 4.923871 AGTGTAGCTTTTGTACTCATGACG 59.076 41.667 0.00 0.00 0.00 4.35
4118 9047 4.921515 GTGTAGCTTTTGTACTCATGACGA 59.078 41.667 0.00 0.00 0.00 4.20
4119 9048 8.471441 AAGTGTAGCTTTTGTACTCATGACGAG 61.471 40.741 0.00 0.00 40.15 4.18
4120 9049 4.521130 AGCTTTTGTACTCATGACGAGA 57.479 40.909 0.00 0.00 45.45 4.04
4121 9050 4.238514 AGCTTTTGTACTCATGACGAGAC 58.761 43.478 0.00 0.00 45.45 3.36
4122 9051 3.987868 GCTTTTGTACTCATGACGAGACA 59.012 43.478 0.00 0.00 45.45 3.41
4123 9052 4.447724 GCTTTTGTACTCATGACGAGACAA 59.552 41.667 0.00 0.00 45.45 3.18
4124 9053 5.120830 GCTTTTGTACTCATGACGAGACAAT 59.879 40.000 0.00 0.00 45.45 2.71
4125 9054 6.347725 GCTTTTGTACTCATGACGAGACAATT 60.348 38.462 0.00 0.00 45.45 2.32
4126 9055 7.148639 GCTTTTGTACTCATGACGAGACAATTA 60.149 37.037 0.00 0.00 45.45 1.40
4127 9056 8.596271 TTTTGTACTCATGACGAGACAATTAA 57.404 30.769 0.00 0.00 45.45 1.40
4128 9057 8.596271 TTTGTACTCATGACGAGACAATTAAA 57.404 30.769 0.00 0.00 45.45 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.590525 GCAGTGACGACGACAACCA 60.591 57.895 0.00 0.00 0.00 3.67
100 114 2.485479 CCTTGCAGTCAGGTGTTGTACT 60.485 50.000 0.00 0.00 0.00 2.73
107 121 1.521450 CCTTGCCTTGCAGTCAGGTG 61.521 60.000 4.86 0.00 40.61 4.00
111 126 0.250467 GAGACCTTGCCTTGCAGTCA 60.250 55.000 10.01 0.00 40.61 3.41
154 171 4.118168 CCCAATCATATTAGGGGTTGCT 57.882 45.455 0.00 0.00 37.66 3.91
172 189 1.203112 TCTTTGCATTTAGGCCACCCA 60.203 47.619 5.01 0.00 0.00 4.51
176 193 4.961730 ACCATATTCTTTGCATTTAGGCCA 59.038 37.500 5.01 0.00 0.00 5.36
186 203 4.963276 TGCTGTGTACCATATTCTTTGC 57.037 40.909 0.00 0.00 0.00 3.68
199 216 2.488952 TCTTGCGTGATTTGCTGTGTA 58.511 42.857 0.00 0.00 0.00 2.90
206 223 0.883833 AGGGCTTCTTGCGTGATTTG 59.116 50.000 0.00 0.00 44.05 2.32
209 226 1.195115 TCTAGGGCTTCTTGCGTGAT 58.805 50.000 0.00 0.00 44.05 3.06
431 450 4.946445 TCACAAAGCTTGCATGATTTCAA 58.054 34.783 12.36 0.00 0.00 2.69
433 452 4.746115 TGTTCACAAAGCTTGCATGATTTC 59.254 37.500 12.36 3.09 0.00 2.17
523 544 7.250569 GGATTTAGAAAATGCTCACGAATTCA 58.749 34.615 6.22 0.00 0.00 2.57
524 545 6.412072 CGGATTTAGAAAATGCTCACGAATTC 59.588 38.462 0.00 0.00 0.00 2.17
530 551 5.545658 TCACGGATTTAGAAAATGCTCAC 57.454 39.130 3.02 0.00 0.00 3.51
534 555 6.124088 ACTGATCACGGATTTAGAAAATGC 57.876 37.500 0.00 0.00 0.00 3.56
555 576 9.592720 CAAAAGTTTTCGTGAATTTCAAAAACT 57.407 25.926 23.70 23.70 43.57 2.66
556 577 9.587461 TCAAAAGTTTTCGTGAATTTCAAAAAC 57.413 25.926 21.26 21.26 37.35 2.43
570 591 5.947503 TTGCATGAAGTCAAAAGTTTTCG 57.052 34.783 0.00 0.00 0.00 3.46
625 646 4.887655 CCAAGATGGAAAATAGTACACCCC 59.112 45.833 0.00 0.00 40.96 4.95
671 692 6.149973 CACGTTTCCTACATACGGAGGATATA 59.850 42.308 0.00 0.00 41.54 0.86
672 693 5.048224 CACGTTTCCTACATACGGAGGATAT 60.048 44.000 0.00 0.00 41.54 1.63
673 694 4.276678 CACGTTTCCTACATACGGAGGATA 59.723 45.833 0.00 0.00 41.54 2.59
674 695 3.067742 CACGTTTCCTACATACGGAGGAT 59.932 47.826 0.00 0.00 41.54 3.24
675 696 2.424601 CACGTTTCCTACATACGGAGGA 59.575 50.000 0.00 0.00 40.20 3.71
684 705 1.961793 AGCAAAGCACGTTTCCTACA 58.038 45.000 0.00 0.00 0.00 2.74
686 707 2.032799 CACAAGCAAAGCACGTTTCCTA 59.967 45.455 0.00 0.00 0.00 2.94
710 731 0.530211 TTTTCTTTGTCCGACGGCGA 60.530 50.000 15.16 1.25 40.82 5.54
718 739 1.324383 TTCGGCCCTTTTCTTTGTCC 58.676 50.000 0.00 0.00 0.00 4.02
747 787 0.447406 TCAACGGATGCGCTGATTTG 59.553 50.000 8.74 4.67 0.00 2.32
786 926 4.063967 CGGCCTCGTACACCTGCA 62.064 66.667 0.00 0.00 0.00 4.41
814 961 1.961277 CAAGCCGCCGTGAACTCTT 60.961 57.895 0.00 0.00 0.00 2.85
881 1033 2.279037 AATTATCTTGGCCCGGCGGT 62.279 55.000 26.32 6.70 0.00 5.68
896 1196 0.322997 CTGGGTGGCGGGTTGAATTA 60.323 55.000 0.00 0.00 0.00 1.40
915 1215 7.162082 TCCAAAAAGAAGACTAAGATGAGACC 58.838 38.462 0.00 0.00 0.00 3.85
1311 2272 2.043248 TACCTGAGAGGGGACGGC 60.043 66.667 0.00 0.00 40.58 5.68
1326 2287 4.894203 CGACGTACGGCCGCCTAC 62.894 72.222 28.58 20.17 38.46 3.18
1346 2307 2.009774 GGAGATCAATCACCAACACCG 58.990 52.381 0.00 0.00 37.47 4.94
1385 2346 4.223144 TCCCGATGATTTCTCATGTAGGA 58.777 43.478 0.00 0.00 42.27 2.94
1386 2347 4.607293 TCCCGATGATTTCTCATGTAGG 57.393 45.455 0.00 0.00 42.27 3.18
1387 2348 5.994054 ACAATCCCGATGATTTCTCATGTAG 59.006 40.000 0.00 0.00 41.85 2.74
1388 2349 5.928976 ACAATCCCGATGATTTCTCATGTA 58.071 37.500 0.00 0.00 41.85 2.29
1389 2350 4.785301 ACAATCCCGATGATTTCTCATGT 58.215 39.130 0.00 0.00 41.85 3.21
1390 2351 5.762825 AACAATCCCGATGATTTCTCATG 57.237 39.130 0.00 0.00 41.85 3.07
1402 2363 1.885887 CTTTGCCTGAAACAATCCCGA 59.114 47.619 0.00 0.00 0.00 5.14
1464 2434 1.671379 GGAACAGTTGAGGGTCGGC 60.671 63.158 0.00 0.00 0.00 5.54
1465 2435 1.374252 CGGAACAGTTGAGGGTCGG 60.374 63.158 0.00 0.00 0.00 4.79
1475 2870 0.252284 ACAGGATCTCCCGGAACAGT 60.252 55.000 0.73 0.00 40.87 3.55
1498 2893 3.741476 CGAACTGGCCCTGCTTGC 61.741 66.667 0.00 0.00 0.00 4.01
1536 2931 2.279784 CAAGAGCCGCTCGATCCC 60.280 66.667 14.71 0.00 35.36 3.85
1601 2996 1.496060 AGGCGTGGTTGATGATCCTA 58.504 50.000 0.00 0.00 0.00 2.94
1660 4083 3.244215 GGTCAATGAGTTCAGTCAGGTGA 60.244 47.826 0.00 0.00 0.00 4.02
1694 4117 4.288531 CGATTAGCCTGGAAGTTAGTACG 58.711 47.826 0.00 0.00 0.00 3.67
1695 4118 4.501058 CCCGATTAGCCTGGAAGTTAGTAC 60.501 50.000 0.00 0.00 0.00 2.73
1697 4120 2.434702 CCCGATTAGCCTGGAAGTTAGT 59.565 50.000 0.00 0.00 0.00 2.24
1698 4121 2.698797 TCCCGATTAGCCTGGAAGTTAG 59.301 50.000 0.00 0.00 0.00 2.34
1699 4122 2.754465 TCCCGATTAGCCTGGAAGTTA 58.246 47.619 0.00 0.00 0.00 2.24
1700 4123 1.580059 TCCCGATTAGCCTGGAAGTT 58.420 50.000 0.00 0.00 0.00 2.66
1701 4124 1.807814 ATCCCGATTAGCCTGGAAGT 58.192 50.000 0.00 0.00 0.00 3.01
1702 4125 2.498167 CAATCCCGATTAGCCTGGAAG 58.502 52.381 0.00 0.00 0.00 3.46
1715 4154 0.171903 CTCTGCAAAAGCCAATCCCG 59.828 55.000 0.00 0.00 0.00 5.14
1791 4231 3.807839 CATCACCGGGCCCCATGA 61.808 66.667 21.89 21.89 0.00 3.07
1800 4240 2.087462 TATCTCCTGCGCATCACCGG 62.087 60.000 12.24 8.73 0.00 5.28
1801 4241 0.665670 CTATCTCCTGCGCATCACCG 60.666 60.000 12.24 0.00 0.00 4.94
1897 4337 2.582052 TGCAACCGGAAGATTGTTCTT 58.418 42.857 9.46 0.00 44.99 2.52
1902 4342 2.178474 CGATTGCAACCGGAAGATTG 57.822 50.000 9.46 2.64 37.79 2.67
1933 4373 3.119884 CGTTTGCCATCTTGACAGCATTA 60.120 43.478 0.00 0.00 34.72 1.90
1992 4432 2.420022 ACTCAGGCAATACACGAAATGC 59.580 45.455 0.00 0.00 38.06 3.56
1995 4435 3.991773 GTGTACTCAGGCAATACACGAAA 59.008 43.478 0.00 0.00 39.34 3.46
1997 4437 3.226346 GTGTACTCAGGCAATACACGA 57.774 47.619 0.00 0.00 39.34 4.35
2002 4442 5.188434 ACTACTACGTGTACTCAGGCAATA 58.812 41.667 0.00 0.00 33.37 1.90
2004 4444 3.415212 ACTACTACGTGTACTCAGGCAA 58.585 45.455 0.00 0.00 33.37 4.52
2006 4446 3.063725 CAGACTACTACGTGTACTCAGGC 59.936 52.174 0.00 0.00 33.37 4.85
2009 4449 3.667360 TGCAGACTACTACGTGTACTCA 58.333 45.455 0.00 0.00 0.00 3.41
2010 4450 4.675190 TTGCAGACTACTACGTGTACTC 57.325 45.455 0.00 0.00 0.00 2.59
2011 4451 5.640189 AATTGCAGACTACTACGTGTACT 57.360 39.130 0.00 0.00 0.00 2.73
2012 4452 5.444218 GCAAATTGCAGACTACTACGTGTAC 60.444 44.000 13.73 0.00 44.26 2.90
2015 5797 3.991069 GCAAATTGCAGACTACTACGTG 58.009 45.455 13.73 0.00 44.26 4.49
2036 5818 7.064609 TCGACTGAAATTTAGCAATCCAGTTAG 59.935 37.037 7.59 6.17 34.06 2.34
2041 5825 5.000591 TGTCGACTGAAATTTAGCAATCCA 58.999 37.500 17.92 0.00 0.00 3.41
2042 5826 5.545658 TGTCGACTGAAATTTAGCAATCC 57.454 39.130 17.92 0.00 0.00 3.01
2043 5827 6.603095 ACTTGTCGACTGAAATTTAGCAATC 58.397 36.000 17.92 0.00 0.00 2.67
2044 5828 6.428159 AGACTTGTCGACTGAAATTTAGCAAT 59.572 34.615 17.92 0.00 0.00 3.56
2045 5829 5.758296 AGACTTGTCGACTGAAATTTAGCAA 59.242 36.000 17.92 0.00 0.00 3.91
2046 5830 5.297547 AGACTTGTCGACTGAAATTTAGCA 58.702 37.500 17.92 0.00 0.00 3.49
2047 5831 5.443431 CGAGACTTGTCGACTGAAATTTAGC 60.443 44.000 17.92 0.00 42.85 3.09
2048 5832 5.061064 CCGAGACTTGTCGACTGAAATTTAG 59.939 44.000 17.92 4.01 42.85 1.85
2049 5833 4.921515 CCGAGACTTGTCGACTGAAATTTA 59.078 41.667 17.92 0.00 42.85 1.40
2050 5834 3.741344 CCGAGACTTGTCGACTGAAATTT 59.259 43.478 17.92 0.00 42.85 1.82
2051 5835 3.243771 ACCGAGACTTGTCGACTGAAATT 60.244 43.478 17.92 0.00 42.85 1.82
2052 5836 2.296471 ACCGAGACTTGTCGACTGAAAT 59.704 45.455 17.92 0.00 42.85 2.17
2053 5837 1.679680 ACCGAGACTTGTCGACTGAAA 59.320 47.619 17.92 1.60 42.85 2.69
2054 5838 1.266175 GACCGAGACTTGTCGACTGAA 59.734 52.381 17.92 2.39 42.85 3.02
2055 5839 0.873054 GACCGAGACTTGTCGACTGA 59.127 55.000 17.92 4.56 42.85 3.41
2056 5840 3.386379 GACCGAGACTTGTCGACTG 57.614 57.895 17.92 11.96 42.85 3.51
2061 5845 2.923605 AGAATCGACCGAGACTTGTC 57.076 50.000 0.00 0.00 0.00 3.18
2062 5846 6.566187 CGAATATAGAATCGACCGAGACTTGT 60.566 42.308 0.00 0.00 41.43 3.16
2063 5847 5.790988 CGAATATAGAATCGACCGAGACTTG 59.209 44.000 0.00 0.00 41.43 3.16
2064 5848 5.469421 ACGAATATAGAATCGACCGAGACTT 59.531 40.000 1.14 0.00 41.43 3.01
2065 5849 4.996122 ACGAATATAGAATCGACCGAGACT 59.004 41.667 1.14 2.89 41.43 3.24
2066 5850 5.080731 CACGAATATAGAATCGACCGAGAC 58.919 45.833 1.14 0.00 41.43 3.36
2067 5851 4.992951 TCACGAATATAGAATCGACCGAGA 59.007 41.667 1.14 0.00 41.43 4.04
2068 5852 5.120363 TCTCACGAATATAGAATCGACCGAG 59.880 44.000 1.14 4.92 41.43 4.63
2069 5853 4.992951 TCTCACGAATATAGAATCGACCGA 59.007 41.667 1.14 0.00 41.43 4.69
2070 5854 5.278964 TCTCACGAATATAGAATCGACCG 57.721 43.478 1.14 0.00 41.43 4.79
2071 5855 6.843208 TGATCTCACGAATATAGAATCGACC 58.157 40.000 1.14 0.00 41.43 4.79
2072 5856 9.428363 GTATGATCTCACGAATATAGAATCGAC 57.572 37.037 1.14 0.00 41.43 4.20
2073 5857 8.328864 CGTATGATCTCACGAATATAGAATCGA 58.671 37.037 12.51 0.00 41.43 3.59
2074 5858 7.110903 GCGTATGATCTCACGAATATAGAATCG 59.889 40.741 19.47 0.00 44.33 3.34
2075 5859 7.110903 CGCGTATGATCTCACGAATATAGAATC 59.889 40.741 19.47 1.94 40.56 2.52
2076 5860 6.907748 CGCGTATGATCTCACGAATATAGAAT 59.092 38.462 19.47 0.00 40.56 2.40
2077 5861 6.248631 CGCGTATGATCTCACGAATATAGAA 58.751 40.000 19.47 0.00 40.56 2.10
2078 5862 5.220605 CCGCGTATGATCTCACGAATATAGA 60.221 44.000 19.47 0.00 40.56 1.98
2079 5863 4.964555 CCGCGTATGATCTCACGAATATAG 59.035 45.833 19.47 6.39 40.56 1.31
2080 5864 4.632688 TCCGCGTATGATCTCACGAATATA 59.367 41.667 19.47 0.00 40.56 0.86
2081 5865 3.439129 TCCGCGTATGATCTCACGAATAT 59.561 43.478 19.47 0.00 40.56 1.28
2082 5866 2.809696 TCCGCGTATGATCTCACGAATA 59.190 45.455 19.47 4.71 40.56 1.75
2083 5867 1.607148 TCCGCGTATGATCTCACGAAT 59.393 47.619 19.47 0.00 40.56 3.34
2084 5868 1.002792 CTCCGCGTATGATCTCACGAA 60.003 52.381 19.47 6.71 40.56 3.85
2085 5869 0.586802 CTCCGCGTATGATCTCACGA 59.413 55.000 19.47 2.78 40.56 4.35
2086 5870 0.586802 TCTCCGCGTATGATCTCACG 59.413 55.000 4.92 13.26 41.04 4.35
2087 5871 2.999507 ATCTCCGCGTATGATCTCAC 57.000 50.000 4.92 0.00 0.00 3.51
2088 5872 5.402398 CATTAATCTCCGCGTATGATCTCA 58.598 41.667 4.92 0.00 0.00 3.27
2089 5873 4.266502 GCATTAATCTCCGCGTATGATCTC 59.733 45.833 4.92 0.00 0.00 2.75
2090 5874 4.177026 GCATTAATCTCCGCGTATGATCT 58.823 43.478 4.92 0.42 0.00 2.75
2091 5875 3.926527 TGCATTAATCTCCGCGTATGATC 59.073 43.478 4.92 0.00 0.00 2.92
2092 5876 3.925379 TGCATTAATCTCCGCGTATGAT 58.075 40.909 4.92 2.43 0.00 2.45
2093 5877 3.378911 TGCATTAATCTCCGCGTATGA 57.621 42.857 4.92 0.00 0.00 2.15
2094 5878 4.211164 TCTTTGCATTAATCTCCGCGTATG 59.789 41.667 4.92 0.00 0.00 2.39
2095 5879 4.377021 TCTTTGCATTAATCTCCGCGTAT 58.623 39.130 4.92 0.00 0.00 3.06
2096 5880 3.787785 TCTTTGCATTAATCTCCGCGTA 58.212 40.909 4.92 0.00 0.00 4.42
2097 5881 2.627945 TCTTTGCATTAATCTCCGCGT 58.372 42.857 4.92 0.00 0.00 6.01
2098 5882 3.673746 TTCTTTGCATTAATCTCCGCG 57.326 42.857 0.00 0.00 0.00 6.46
2099 5883 6.892310 ATTTTTCTTTGCATTAATCTCCGC 57.108 33.333 0.00 0.00 0.00 5.54
2143 5927 6.964370 CGGTCATGCGACAGAAAATATAAAAA 59.036 34.615 0.00 0.00 44.54 1.94
2144 5928 6.314152 TCGGTCATGCGACAGAAAATATAAAA 59.686 34.615 0.00 0.00 42.39 1.52
2145 5929 5.813157 TCGGTCATGCGACAGAAAATATAAA 59.187 36.000 0.00 0.00 42.39 1.40
2146 5930 5.353111 TCGGTCATGCGACAGAAAATATAA 58.647 37.500 0.00 0.00 42.39 0.98
2147 5931 4.939271 TCGGTCATGCGACAGAAAATATA 58.061 39.130 0.00 0.00 42.39 0.86
2148 5932 3.792401 TCGGTCATGCGACAGAAAATAT 58.208 40.909 0.00 0.00 42.39 1.28
2149 5933 3.119280 TCTCGGTCATGCGACAGAAAATA 60.119 43.478 0.00 0.00 44.25 1.40
2150 5934 2.002586 CTCGGTCATGCGACAGAAAAT 58.997 47.619 0.00 0.00 44.25 1.82
2151 5935 1.000394 TCTCGGTCATGCGACAGAAAA 60.000 47.619 0.00 0.00 44.25 2.29
2152 5936 0.601057 TCTCGGTCATGCGACAGAAA 59.399 50.000 0.00 0.00 44.25 2.52
2153 5937 0.109272 GTCTCGGTCATGCGACAGAA 60.109 55.000 0.00 0.00 44.25 3.02
2154 5938 0.960861 AGTCTCGGTCATGCGACAGA 60.961 55.000 0.00 0.00 44.54 3.41
2155 5939 0.109086 AAGTCTCGGTCATGCGACAG 60.109 55.000 0.00 0.00 44.54 3.51
2156 5940 0.388520 CAAGTCTCGGTCATGCGACA 60.389 55.000 0.00 0.00 44.54 4.35
2157 5941 1.078759 CCAAGTCTCGGTCATGCGAC 61.079 60.000 0.00 0.00 41.80 5.19
2158 5942 1.215382 CCAAGTCTCGGTCATGCGA 59.785 57.895 0.00 0.00 0.00 5.10
2159 5943 0.670546 AACCAAGTCTCGGTCATGCG 60.671 55.000 0.00 0.00 34.99 4.73
2160 5944 2.380084 TAACCAAGTCTCGGTCATGC 57.620 50.000 0.00 0.00 34.99 4.06
2161 5945 3.926616 ACTTAACCAAGTCTCGGTCATG 58.073 45.455 0.00 0.00 41.25 3.07
2171 5955 4.686122 CAGTTGACTGGGACTTAACCAAGT 60.686 45.833 3.19 0.00 45.83 3.16
2172 5956 3.815401 CAGTTGACTGGGACTTAACCAAG 59.185 47.826 3.19 0.00 40.20 3.61
2173 5957 3.456644 TCAGTTGACTGGGACTTAACCAA 59.543 43.478 10.97 0.00 43.91 3.67
2174 5958 3.042682 TCAGTTGACTGGGACTTAACCA 58.957 45.455 10.97 0.00 43.91 3.67
2175 5959 3.323979 TCTCAGTTGACTGGGACTTAACC 59.676 47.826 9.59 0.00 45.72 2.85
2176 5960 4.602340 TCTCAGTTGACTGGGACTTAAC 57.398 45.455 9.59 0.00 45.72 2.01
2183 5967 4.019858 TGACTAGATCTCAGTTGACTGGG 58.980 47.826 10.97 7.96 45.72 4.45
2184 5968 4.460731 TGTGACTAGATCTCAGTTGACTGG 59.539 45.833 10.97 2.92 43.91 4.00
2185 5969 5.398169 GTGTGACTAGATCTCAGTTGACTG 58.602 45.833 0.00 4.77 45.08 3.51
2186 5970 4.461081 GGTGTGACTAGATCTCAGTTGACT 59.539 45.833 0.00 0.00 31.54 3.41
2187 5971 4.381079 GGGTGTGACTAGATCTCAGTTGAC 60.381 50.000 0.00 4.09 31.54 3.18
2188 5972 3.764434 GGGTGTGACTAGATCTCAGTTGA 59.236 47.826 0.00 0.00 31.54 3.18
2189 5973 3.428180 CGGGTGTGACTAGATCTCAGTTG 60.428 52.174 0.00 0.00 31.54 3.16
2190 5974 2.755655 CGGGTGTGACTAGATCTCAGTT 59.244 50.000 0.00 0.00 31.54 3.16
2191 5975 2.291024 ACGGGTGTGACTAGATCTCAGT 60.291 50.000 0.00 1.27 31.54 3.41
2192 5976 2.370349 ACGGGTGTGACTAGATCTCAG 58.630 52.381 0.00 0.00 31.54 3.35
2193 5977 2.492088 CAACGGGTGTGACTAGATCTCA 59.508 50.000 0.00 0.00 0.00 3.27
2194 5978 2.492484 ACAACGGGTGTGACTAGATCTC 59.508 50.000 0.00 0.00 39.72 2.75
2195 5979 2.526432 ACAACGGGTGTGACTAGATCT 58.474 47.619 0.00 0.00 39.72 2.75
2196 5980 3.314541 AACAACGGGTGTGACTAGATC 57.685 47.619 0.00 0.00 40.60 2.75
2197 5981 4.877378 TTAACAACGGGTGTGACTAGAT 57.123 40.909 0.00 0.00 40.60 1.98
2198 5982 4.877378 ATTAACAACGGGTGTGACTAGA 57.123 40.909 0.00 0.00 40.60 2.43
2199 5983 7.039882 AGAATATTAACAACGGGTGTGACTAG 58.960 38.462 0.00 0.00 40.60 2.57
2200 5984 6.938507 AGAATATTAACAACGGGTGTGACTA 58.061 36.000 0.00 0.00 40.60 2.59
2201 5985 5.801380 AGAATATTAACAACGGGTGTGACT 58.199 37.500 0.00 0.00 40.60 3.41
2202 5986 6.490566 AAGAATATTAACAACGGGTGTGAC 57.509 37.500 0.00 0.00 40.60 3.67
2203 5987 8.795842 AATAAGAATATTAACAACGGGTGTGA 57.204 30.769 0.00 0.00 40.60 3.58
2206 5990 9.607285 GCATAATAAGAATATTAACAACGGGTG 57.393 33.333 0.00 0.00 37.49 4.61
2207 5991 9.344772 TGCATAATAAGAATATTAACAACGGGT 57.655 29.630 0.00 0.00 37.49 5.28
2208 5992 9.825972 CTGCATAATAAGAATATTAACAACGGG 57.174 33.333 0.00 0.00 37.49 5.28
2250 6034 3.942829 TGCCTTCATTCTTCGATTGAGT 58.057 40.909 0.00 0.00 0.00 3.41
2310 6094 0.556258 TCGCCCTCTCCCTCTTCATA 59.444 55.000 0.00 0.00 0.00 2.15
2341 6125 5.324784 AGTAGATCGTTGTTGTCAGCATA 57.675 39.130 0.00 0.00 0.00 3.14
2346 6130 3.427098 CGCCTAGTAGATCGTTGTTGTCA 60.427 47.826 0.00 0.00 0.00 3.58
2353 6137 3.211865 TCATCACGCCTAGTAGATCGTT 58.788 45.455 12.62 0.87 32.38 3.85
2423 6207 2.949644 ACTATGTCGTCGATGGTCATCA 59.050 45.455 15.56 0.00 37.69 3.07
2432 6216 1.938577 GCTCACCTACTATGTCGTCGA 59.061 52.381 0.00 0.00 0.00 4.20
2550 6335 1.076677 ACACGAAGAACCTCCTCCCTA 59.923 52.381 0.00 0.00 0.00 3.53
2580 6365 2.883888 GCCCTCAAAATCTGGCTGGTTA 60.884 50.000 0.00 0.00 40.77 2.85
2589 6374 3.448660 GCCTGTTTATGCCCTCAAAATCT 59.551 43.478 0.00 0.00 0.00 2.40
2668 6737 8.997323 ACAAAGAAGATAGACAAATTCAGAGTG 58.003 33.333 0.00 0.00 0.00 3.51
2678 6747 3.994392 GCACCGACAAAGAAGATAGACAA 59.006 43.478 0.00 0.00 0.00 3.18
2683 6752 2.301870 ACCTGCACCGACAAAGAAGATA 59.698 45.455 0.00 0.00 0.00 1.98
2715 6787 4.778213 ATAGCCTAAGAACCTCATGCAA 57.222 40.909 0.00 0.00 0.00 4.08
2750 6823 2.646175 CGCCTCCCGACCAAGAAGA 61.646 63.158 0.00 0.00 40.02 2.87
2753 6826 0.106569 TATACGCCTCCCGACCAAGA 60.107 55.000 0.00 0.00 41.02 3.02
2773 6846 1.675720 GCCTCCCAGCTCTGTCTCTC 61.676 65.000 0.00 0.00 0.00 3.20
2816 6889 0.875474 ACACAATTGGCAGCGCAAAC 60.875 50.000 11.47 0.00 0.00 2.93
3320 8118 0.473755 TGTTGCTCCACCAGTGATGT 59.526 50.000 0.00 0.00 0.00 3.06
3336 8134 3.650950 AGCCCCGGTGCTGATGTT 61.651 61.111 11.85 0.00 40.90 2.71
3344 8142 4.659172 TTTGCTCCAGCCCCGGTG 62.659 66.667 0.00 0.00 41.18 4.94
3470 8271 8.276477 TCCTCTAAAAAGAAAAAGGTTGGAGTA 58.724 33.333 0.00 0.00 0.00 2.59
3492 8293 4.437772 ACGAGTAACAGCTACTTTCCTC 57.562 45.455 0.00 0.00 41.17 3.71
3533 8334 5.353938 CAAGCCAGCAATGTTAGCATTATT 58.646 37.500 4.33 0.00 42.91 1.40
3534 8335 4.738541 GCAAGCCAGCAATGTTAGCATTAT 60.739 41.667 4.33 0.00 42.91 1.28
3535 8336 3.429272 GCAAGCCAGCAATGTTAGCATTA 60.429 43.478 4.33 0.00 42.91 1.90
3680 8593 7.174946 TGAAAGTTGATGAGGGAATTGTAAGTC 59.825 37.037 0.00 0.00 0.00 3.01
3796 8725 0.535335 GTACAGCATGAAGGACGGGA 59.465 55.000 0.00 0.00 39.69 5.14
3839 8768 3.135530 GGGATAGAAGATGTTGCCACTCT 59.864 47.826 0.00 0.00 0.00 3.24
3844 8773 2.622064 ACGGGATAGAAGATGTTGCC 57.378 50.000 0.00 0.00 0.00 4.52
3845 8774 3.065371 CCAAACGGGATAGAAGATGTTGC 59.935 47.826 0.00 0.00 40.01 4.17
3846 8775 4.513442 TCCAAACGGGATAGAAGATGTTG 58.487 43.478 0.00 0.00 42.15 3.33
3847 8776 4.837093 TCCAAACGGGATAGAAGATGTT 57.163 40.909 0.00 0.00 42.15 2.71
3861 8790 4.024725 TGTCAAGTTAACCGAATCCAAACG 60.025 41.667 0.88 0.00 0.00 3.60
3862 8791 5.209977 GTGTCAAGTTAACCGAATCCAAAC 58.790 41.667 0.88 0.00 0.00 2.93
3863 8792 4.882427 TGTGTCAAGTTAACCGAATCCAAA 59.118 37.500 0.88 0.00 0.00 3.28
3864 8793 4.452825 TGTGTCAAGTTAACCGAATCCAA 58.547 39.130 0.88 0.00 0.00 3.53
3865 8794 4.074627 TGTGTCAAGTTAACCGAATCCA 57.925 40.909 0.88 0.00 0.00 3.41
3866 8795 4.083484 CCTTGTGTCAAGTTAACCGAATCC 60.083 45.833 0.88 0.00 0.00 3.01
3867 8796 4.083484 CCCTTGTGTCAAGTTAACCGAATC 60.083 45.833 0.88 0.00 0.00 2.52
3868 8797 3.818773 CCCTTGTGTCAAGTTAACCGAAT 59.181 43.478 0.88 0.00 0.00 3.34
3869 8798 3.118334 TCCCTTGTGTCAAGTTAACCGAA 60.118 43.478 0.88 0.00 0.00 4.30
3870 8799 2.435069 TCCCTTGTGTCAAGTTAACCGA 59.565 45.455 0.88 0.00 0.00 4.69
3871 8800 2.806244 CTCCCTTGTGTCAAGTTAACCG 59.194 50.000 0.88 0.00 0.00 4.44
3872 8801 3.146847 CCTCCCTTGTGTCAAGTTAACC 58.853 50.000 0.88 0.00 0.00 2.85
3873 8802 3.146847 CCCTCCCTTGTGTCAAGTTAAC 58.853 50.000 0.00 0.00 0.00 2.01
3874 8803 3.050089 TCCCTCCCTTGTGTCAAGTTAA 58.950 45.455 8.37 0.00 0.00 2.01
3875 8804 2.696775 TCCCTCCCTTGTGTCAAGTTA 58.303 47.619 8.37 0.00 0.00 2.24
3876 8805 1.518367 TCCCTCCCTTGTGTCAAGTT 58.482 50.000 8.37 0.00 0.00 2.66
3877 8806 1.352352 CATCCCTCCCTTGTGTCAAGT 59.648 52.381 8.37 0.00 0.00 3.16
3878 8807 1.352352 ACATCCCTCCCTTGTGTCAAG 59.648 52.381 2.90 2.90 0.00 3.02
3879 8808 1.073763 CACATCCCTCCCTTGTGTCAA 59.926 52.381 0.00 0.00 36.77 3.18
3880 8809 0.692476 CACATCCCTCCCTTGTGTCA 59.308 55.000 0.00 0.00 36.77 3.58
3881 8810 3.558674 CACATCCCTCCCTTGTGTC 57.441 57.895 0.00 0.00 36.77 3.67
3882 8811 2.868504 ACACATCCCTCCCTTGTGT 58.131 52.632 2.29 2.29 46.71 3.72
3883 8812 2.162681 GAAACACATCCCTCCCTTGTG 58.837 52.381 1.02 1.02 44.85 3.33
3884 8813 1.271379 CGAAACACATCCCTCCCTTGT 60.271 52.381 0.00 0.00 0.00 3.16
3885 8814 1.271379 ACGAAACACATCCCTCCCTTG 60.271 52.381 0.00 0.00 0.00 3.61
3886 8815 1.064825 ACGAAACACATCCCTCCCTT 58.935 50.000 0.00 0.00 0.00 3.95
3887 8816 1.064825 AACGAAACACATCCCTCCCT 58.935 50.000 0.00 0.00 0.00 4.20
3888 8817 1.165270 CAACGAAACACATCCCTCCC 58.835 55.000 0.00 0.00 0.00 4.30
3889 8818 1.165270 CCAACGAAACACATCCCTCC 58.835 55.000 0.00 0.00 0.00 4.30
3890 8819 2.178912 TCCAACGAAACACATCCCTC 57.821 50.000 0.00 0.00 0.00 4.30
3891 8820 2.649531 TTCCAACGAAACACATCCCT 57.350 45.000 0.00 0.00 0.00 4.20
3892 8821 3.081804 AGATTCCAACGAAACACATCCC 58.918 45.455 0.00 0.00 0.00 3.85
3893 8822 3.751175 TGAGATTCCAACGAAACACATCC 59.249 43.478 0.00 0.00 0.00 3.51
3894 8823 4.452455 AGTGAGATTCCAACGAAACACATC 59.548 41.667 0.00 0.00 35.26 3.06
3895 8824 4.389374 AGTGAGATTCCAACGAAACACAT 58.611 39.130 0.00 0.00 35.26 3.21
3896 8825 3.804036 AGTGAGATTCCAACGAAACACA 58.196 40.909 0.00 0.00 35.26 3.72
3897 8826 7.707035 AGATATAGTGAGATTCCAACGAAACAC 59.293 37.037 0.00 0.00 34.16 3.32
3898 8827 7.706607 CAGATATAGTGAGATTCCAACGAAACA 59.293 37.037 0.00 0.00 0.00 2.83
3899 8828 7.921214 TCAGATATAGTGAGATTCCAACGAAAC 59.079 37.037 0.00 0.00 0.00 2.78
3900 8829 8.007405 TCAGATATAGTGAGATTCCAACGAAA 57.993 34.615 0.00 0.00 0.00 3.46
3901 8830 7.582667 TCAGATATAGTGAGATTCCAACGAA 57.417 36.000 0.00 0.00 0.00 3.85
3902 8831 7.582667 TTCAGATATAGTGAGATTCCAACGA 57.417 36.000 0.00 0.00 0.00 3.85
3903 8832 7.543868 GGATTCAGATATAGTGAGATTCCAACG 59.456 40.741 0.00 0.00 0.00 4.10
3904 8833 8.592809 AGGATTCAGATATAGTGAGATTCCAAC 58.407 37.037 0.00 0.00 0.00 3.77
3905 8834 8.733092 AGGATTCAGATATAGTGAGATTCCAA 57.267 34.615 0.00 0.00 0.00 3.53
3906 8835 9.249053 GTAGGATTCAGATATAGTGAGATTCCA 57.751 37.037 0.00 0.00 0.00 3.53
3907 8836 9.249053 TGTAGGATTCAGATATAGTGAGATTCC 57.751 37.037 0.00 0.00 0.00 3.01
3909 8838 9.593565 TGTGTAGGATTCAGATATAGTGAGATT 57.406 33.333 0.00 0.00 0.00 2.40
3910 8839 9.241919 CTGTGTAGGATTCAGATATAGTGAGAT 57.758 37.037 0.00 0.00 0.00 2.75
3911 8840 8.221251 ACTGTGTAGGATTCAGATATAGTGAGA 58.779 37.037 0.00 0.00 33.93 3.27
3912 8841 8.402798 ACTGTGTAGGATTCAGATATAGTGAG 57.597 38.462 0.00 0.00 33.93 3.51
3913 8842 8.768501 AACTGTGTAGGATTCAGATATAGTGA 57.231 34.615 0.00 0.00 33.93 3.41
3921 8850 9.653287 CATAAAGTTAACTGTGTAGGATTCAGA 57.347 33.333 9.34 0.00 33.93 3.27
3922 8851 9.436957 ACATAAAGTTAACTGTGTAGGATTCAG 57.563 33.333 9.34 0.00 35.60 3.02
3925 8854 9.662947 GGTACATAAAGTTAACTGTGTAGGATT 57.337 33.333 20.34 8.75 0.00 3.01
3926 8855 7.977853 CGGTACATAAAGTTAACTGTGTAGGAT 59.022 37.037 20.34 1.87 0.00 3.24
3927 8856 7.039784 ACGGTACATAAAGTTAACTGTGTAGGA 60.040 37.037 20.34 7.17 29.30 2.94
3928 8857 7.062605 CACGGTACATAAAGTTAACTGTGTAGG 59.937 40.741 20.34 17.93 39.56 3.18
3929 8858 7.411157 GCACGGTACATAAAGTTAACTGTGTAG 60.411 40.741 20.34 15.12 43.39 2.74
3930 8859 6.365789 GCACGGTACATAAAGTTAACTGTGTA 59.634 38.462 9.34 14.92 43.39 2.90
3931 8860 5.178067 GCACGGTACATAAAGTTAACTGTGT 59.822 40.000 9.34 15.85 43.39 3.72
3932 8861 5.177881 TGCACGGTACATAAAGTTAACTGTG 59.822 40.000 9.34 10.27 43.92 3.66
3933 8862 5.178067 GTGCACGGTACATAAAGTTAACTGT 59.822 40.000 9.34 6.15 30.22 3.55
3934 8863 5.407387 AGTGCACGGTACATAAAGTTAACTG 59.593 40.000 12.01 0.00 0.00 3.16
3935 8864 5.544650 AGTGCACGGTACATAAAGTTAACT 58.455 37.500 12.01 1.12 0.00 2.24
3936 8865 5.636543 AGAGTGCACGGTACATAAAGTTAAC 59.363 40.000 12.01 0.00 0.00 2.01
3937 8866 5.786311 AGAGTGCACGGTACATAAAGTTAA 58.214 37.500 12.01 0.00 0.00 2.01
3938 8867 5.395682 AGAGTGCACGGTACATAAAGTTA 57.604 39.130 12.01 0.00 0.00 2.24
3939 8868 4.243270 GAGAGTGCACGGTACATAAAGTT 58.757 43.478 12.01 0.00 0.00 2.66
3940 8869 3.672511 CGAGAGTGCACGGTACATAAAGT 60.673 47.826 12.01 0.00 0.00 2.66
3941 8870 2.852413 CGAGAGTGCACGGTACATAAAG 59.148 50.000 12.01 0.00 0.00 1.85
3942 8871 2.871133 CGAGAGTGCACGGTACATAAA 58.129 47.619 12.01 0.00 0.00 1.40
3943 8872 1.468565 GCGAGAGTGCACGGTACATAA 60.469 52.381 12.01 0.00 34.15 1.90
3944 8873 0.099968 GCGAGAGTGCACGGTACATA 59.900 55.000 12.01 0.00 34.15 2.29
3945 8874 1.153823 GCGAGAGTGCACGGTACAT 60.154 57.895 12.01 0.00 34.15 2.29
3946 8875 2.257371 GCGAGAGTGCACGGTACA 59.743 61.111 12.01 0.00 34.15 2.90
3947 8876 2.257371 TGCGAGAGTGCACGGTAC 59.743 61.111 12.01 4.80 40.62 3.34
3953 8882 1.583477 CTCTGAGTGCGAGAGTGCA 59.417 57.895 0.00 0.00 43.95 4.57
3954 8883 1.153862 CCTCTGAGTGCGAGAGTGC 60.154 63.158 3.66 0.00 36.04 4.40
3955 8884 0.600557 AACCTCTGAGTGCGAGAGTG 59.399 55.000 3.66 0.00 36.04 3.51
3956 8885 0.885196 GAACCTCTGAGTGCGAGAGT 59.115 55.000 3.66 0.00 36.04 3.24
3957 8886 0.172352 GGAACCTCTGAGTGCGAGAG 59.828 60.000 3.66 0.00 37.33 3.20
3958 8887 0.539669 TGGAACCTCTGAGTGCGAGA 60.540 55.000 3.66 0.00 0.00 4.04
3959 8888 0.534412 ATGGAACCTCTGAGTGCGAG 59.466 55.000 3.66 0.00 0.00 5.03
3960 8889 0.976641 AATGGAACCTCTGAGTGCGA 59.023 50.000 3.66 0.00 0.00 5.10
3961 8890 1.081892 CAATGGAACCTCTGAGTGCG 58.918 55.000 3.66 0.00 0.00 5.34
3962 8891 1.003580 TCCAATGGAACCTCTGAGTGC 59.996 52.381 0.00 0.00 0.00 4.40
3963 8892 3.641434 ATCCAATGGAACCTCTGAGTG 57.359 47.619 5.89 0.00 34.34 3.51
3964 8893 4.383118 CGTTATCCAATGGAACCTCTGAGT 60.383 45.833 5.89 0.00 34.34 3.41
3965 8894 4.122776 CGTTATCCAATGGAACCTCTGAG 58.877 47.826 5.89 0.00 34.34 3.35
3966 8895 3.772572 TCGTTATCCAATGGAACCTCTGA 59.227 43.478 5.89 0.00 34.34 3.27
3967 8896 4.137116 TCGTTATCCAATGGAACCTCTG 57.863 45.455 5.89 0.00 34.34 3.35
3968 8897 6.494666 TTATCGTTATCCAATGGAACCTCT 57.505 37.500 5.89 0.00 34.34 3.69
3969 8898 6.766467 AGTTTATCGTTATCCAATGGAACCTC 59.234 38.462 5.89 0.00 34.34 3.85
3970 8899 6.659824 AGTTTATCGTTATCCAATGGAACCT 58.340 36.000 5.89 0.00 34.34 3.50
3971 8900 6.937436 AGTTTATCGTTATCCAATGGAACC 57.063 37.500 5.89 0.00 34.34 3.62
3992 8921 9.911788 AGTGACATCTTTGATTTCCATATTAGT 57.088 29.630 0.00 0.00 0.00 2.24
4023 8952 8.840321 CCGAAGATACCACATGAAAATCTTATT 58.160 33.333 0.00 0.00 37.10 1.40
4024 8953 8.210946 TCCGAAGATACCACATGAAAATCTTAT 58.789 33.333 0.00 0.00 37.10 1.73
4025 8954 7.561251 TCCGAAGATACCACATGAAAATCTTA 58.439 34.615 0.00 0.00 37.10 2.10
4026 8955 6.414732 TCCGAAGATACCACATGAAAATCTT 58.585 36.000 0.00 8.23 39.09 2.40
4027 8956 5.989477 TCCGAAGATACCACATGAAAATCT 58.011 37.500 0.00 0.00 0.00 2.40
4028 8957 6.677781 TTCCGAAGATACCACATGAAAATC 57.322 37.500 0.00 0.00 0.00 2.17
4029 8958 6.095440 CCTTTCCGAAGATACCACATGAAAAT 59.905 38.462 0.00 0.00 34.71 1.82
4030 8959 5.414454 CCTTTCCGAAGATACCACATGAAAA 59.586 40.000 0.00 0.00 34.71 2.29
4031 8960 4.941263 CCTTTCCGAAGATACCACATGAAA 59.059 41.667 0.00 0.00 34.71 2.69
4032 8961 4.224147 TCCTTTCCGAAGATACCACATGAA 59.776 41.667 0.00 0.00 34.71 2.57
4033 8962 3.772572 TCCTTTCCGAAGATACCACATGA 59.227 43.478 0.00 0.00 34.71 3.07
4034 8963 4.122776 CTCCTTTCCGAAGATACCACATG 58.877 47.826 0.00 0.00 34.71 3.21
4035 8964 3.775316 ACTCCTTTCCGAAGATACCACAT 59.225 43.478 0.00 0.00 34.71 3.21
4036 8965 3.170717 ACTCCTTTCCGAAGATACCACA 58.829 45.455 0.00 0.00 34.71 4.17
4037 8966 3.889520 ACTCCTTTCCGAAGATACCAC 57.110 47.619 0.00 0.00 34.71 4.16
4038 8967 3.581332 ACAACTCCTTTCCGAAGATACCA 59.419 43.478 0.00 0.00 34.71 3.25
4039 8968 3.933332 CACAACTCCTTTCCGAAGATACC 59.067 47.826 0.00 0.00 34.71 2.73
4040 8969 3.371285 GCACAACTCCTTTCCGAAGATAC 59.629 47.826 0.00 0.00 34.71 2.24
4041 8970 3.260884 AGCACAACTCCTTTCCGAAGATA 59.739 43.478 0.00 0.00 34.71 1.98
4042 8971 2.039084 AGCACAACTCCTTTCCGAAGAT 59.961 45.455 0.00 0.00 34.71 2.40
4043 8972 1.416401 AGCACAACTCCTTTCCGAAGA 59.584 47.619 0.00 0.00 34.71 2.87
4044 8973 1.884235 AGCACAACTCCTTTCCGAAG 58.116 50.000 0.00 0.00 0.00 3.79
4045 8974 3.070446 TCTTAGCACAACTCCTTTCCGAA 59.930 43.478 0.00 0.00 0.00 4.30
4046 8975 2.631062 TCTTAGCACAACTCCTTTCCGA 59.369 45.455 0.00 0.00 0.00 4.55
4047 8976 3.040147 TCTTAGCACAACTCCTTTCCG 57.960 47.619 0.00 0.00 0.00 4.30
4048 8977 5.531287 TCTTTTCTTAGCACAACTCCTTTCC 59.469 40.000 0.00 0.00 0.00 3.13
4049 8978 6.038271 TGTCTTTTCTTAGCACAACTCCTTTC 59.962 38.462 0.00 0.00 0.00 2.62
4050 8979 5.885912 TGTCTTTTCTTAGCACAACTCCTTT 59.114 36.000 0.00 0.00 0.00 3.11
4051 8980 5.437060 TGTCTTTTCTTAGCACAACTCCTT 58.563 37.500 0.00 0.00 0.00 3.36
4052 8981 5.036117 TGTCTTTTCTTAGCACAACTCCT 57.964 39.130 0.00 0.00 0.00 3.69
4053 8982 5.505819 GGTTGTCTTTTCTTAGCACAACTCC 60.506 44.000 11.77 0.00 44.12 3.85
4054 8983 5.297029 AGGTTGTCTTTTCTTAGCACAACTC 59.703 40.000 11.77 4.24 44.12 3.01
4055 8984 5.193679 AGGTTGTCTTTTCTTAGCACAACT 58.806 37.500 11.77 0.00 44.12 3.16
4056 8985 5.500645 AGGTTGTCTTTTCTTAGCACAAC 57.499 39.130 4.94 4.94 44.00 3.32
4057 8986 4.272504 CGAGGTTGTCTTTTCTTAGCACAA 59.727 41.667 0.00 0.00 0.00 3.33
4058 8987 3.807622 CGAGGTTGTCTTTTCTTAGCACA 59.192 43.478 0.00 0.00 0.00 4.57
4059 8988 3.364068 GCGAGGTTGTCTTTTCTTAGCAC 60.364 47.826 0.00 0.00 0.00 4.40
4060 8989 2.806244 GCGAGGTTGTCTTTTCTTAGCA 59.194 45.455 0.00 0.00 0.00 3.49
4061 8990 3.067833 AGCGAGGTTGTCTTTTCTTAGC 58.932 45.455 0.00 0.00 0.00 3.09
4062 8991 3.365220 CGAGCGAGGTTGTCTTTTCTTAG 59.635 47.826 0.00 0.00 0.00 2.18
4063 8992 3.005050 TCGAGCGAGGTTGTCTTTTCTTA 59.995 43.478 0.00 0.00 0.00 2.10
4064 8993 2.135933 CGAGCGAGGTTGTCTTTTCTT 58.864 47.619 0.00 0.00 0.00 2.52
4065 8994 1.340248 TCGAGCGAGGTTGTCTTTTCT 59.660 47.619 0.00 0.00 0.00 2.52
4066 8995 1.456165 GTCGAGCGAGGTTGTCTTTTC 59.544 52.381 0.00 0.00 0.00 2.29
4067 8996 1.499049 GTCGAGCGAGGTTGTCTTTT 58.501 50.000 0.00 0.00 0.00 2.27
4068 8997 0.663568 CGTCGAGCGAGGTTGTCTTT 60.664 55.000 4.58 0.00 44.77 2.52
4069 8998 1.081376 CGTCGAGCGAGGTTGTCTT 60.081 57.895 4.58 0.00 44.77 3.01
4070 8999 2.561885 CGTCGAGCGAGGTTGTCT 59.438 61.111 4.58 0.00 44.77 3.41
4071 9000 3.173240 GCGTCGAGCGAGGTTGTC 61.173 66.667 13.15 0.00 44.77 3.18
4080 9009 5.559843 AGCTACACTTCTTAGCGTCGAGC 62.560 52.174 0.00 0.00 45.64 5.03
4081 9010 2.096174 AGCTACACTTCTTAGCGTCGAG 59.904 50.000 0.00 0.00 45.64 4.04
4082 9011 2.082231 AGCTACACTTCTTAGCGTCGA 58.918 47.619 0.00 0.00 45.64 4.20
4083 9012 2.546195 AGCTACACTTCTTAGCGTCG 57.454 50.000 0.00 0.00 45.64 5.12
4084 9013 4.448060 ACAAAAGCTACACTTCTTAGCGTC 59.552 41.667 0.00 0.00 45.64 5.19
4085 9014 4.377897 ACAAAAGCTACACTTCTTAGCGT 58.622 39.130 0.00 0.00 45.64 5.07
4086 9015 4.992381 ACAAAAGCTACACTTCTTAGCG 57.008 40.909 0.00 0.00 45.64 4.26
4087 9016 6.645415 TGAGTACAAAAGCTACACTTCTTAGC 59.355 38.462 0.00 0.00 42.06 3.09
4088 9017 8.651588 CATGAGTACAAAAGCTACACTTCTTAG 58.348 37.037 0.00 0.00 37.75 2.18
4089 9018 8.364894 TCATGAGTACAAAAGCTACACTTCTTA 58.635 33.333 0.00 0.00 37.75 2.10
4090 9019 7.171678 GTCATGAGTACAAAAGCTACACTTCTT 59.828 37.037 0.00 0.00 37.75 2.52
4091 9020 6.647067 GTCATGAGTACAAAAGCTACACTTCT 59.353 38.462 0.00 0.00 37.75 2.85
4092 9021 6.400091 CGTCATGAGTACAAAAGCTACACTTC 60.400 42.308 0.00 0.00 37.75 3.01
4093 9022 5.405571 CGTCATGAGTACAAAAGCTACACTT 59.594 40.000 0.00 0.00 41.70 3.16
4094 9023 4.923871 CGTCATGAGTACAAAAGCTACACT 59.076 41.667 0.00 0.00 0.00 3.55
4095 9024 4.921515 TCGTCATGAGTACAAAAGCTACAC 59.078 41.667 0.00 0.00 0.00 2.90
4096 9025 5.048294 TCTCGTCATGAGTACAAAAGCTACA 60.048 40.000 0.00 0.00 45.46 2.74
4097 9026 5.286558 GTCTCGTCATGAGTACAAAAGCTAC 59.713 44.000 0.00 0.00 45.46 3.58
4098 9027 5.048294 TGTCTCGTCATGAGTACAAAAGCTA 60.048 40.000 0.00 0.00 45.46 3.32
4099 9028 4.238514 GTCTCGTCATGAGTACAAAAGCT 58.761 43.478 0.00 0.00 45.46 3.74
4100 9029 3.987868 TGTCTCGTCATGAGTACAAAAGC 59.012 43.478 0.00 0.00 45.46 3.51
4101 9030 6.712241 ATTGTCTCGTCATGAGTACAAAAG 57.288 37.500 12.87 0.00 45.46 2.27
4102 9031 8.596271 TTAATTGTCTCGTCATGAGTACAAAA 57.404 30.769 12.87 4.99 45.46 2.44
4103 9032 8.596271 TTTAATTGTCTCGTCATGAGTACAAA 57.404 30.769 12.87 0.00 45.46 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.