Multiple sequence alignment - TraesCS7A01G523400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G523400 chr7A 100.000 3604 0 0 1 3604 706037960 706034357 0.000000e+00 6656.0
1 TraesCS7A01G523400 chr7A 79.839 620 108 10 1975 2582 705331770 705331156 1.540000e-118 436.0
2 TraesCS7A01G523400 chr7A 77.548 775 133 26 1085 1830 705502647 705503409 2.570000e-116 429.0
3 TraesCS7A01G523400 chrUn 91.664 2843 147 39 6 2805 293163498 293160703 0.000000e+00 3855.0
4 TraesCS7A01G523400 chrUn 91.033 1316 92 14 6 1312 321308158 321309456 0.000000e+00 1753.0
5 TraesCS7A01G523400 chrUn 92.120 736 24 14 2082 2799 409868704 409869423 0.000000e+00 1007.0
6 TraesCS7A01G523400 chrUn 87.395 476 43 12 2977 3445 368039617 368039152 6.850000e-147 531.0
7 TraesCS7A01G523400 chrUn 87.395 476 43 12 2977 3445 471071710 471071245 6.850000e-147 531.0
8 TraesCS7A01G523400 chrUn 94.737 95 5 0 2798 2892 293160657 293160563 8.060000e-32 148.0
9 TraesCS7A01G523400 chrUn 94.737 95 5 0 2798 2892 409869475 409869569 8.060000e-32 148.0
10 TraesCS7A01G523400 chr6D 83.802 605 82 11 1975 2570 97520616 97520019 8.740000e-156 560.0
11 TraesCS7A01G523400 chr6D 79.459 740 124 21 1041 1757 97521478 97520744 1.930000e-137 499.0
12 TraesCS7A01G523400 chr7B 80.025 786 129 19 999 1763 704790652 704791430 1.130000e-154 556.0
13 TraesCS7A01G523400 chr7B 82.623 610 85 11 1975 2570 704290436 704291038 1.480000e-143 520.0
14 TraesCS7A01G523400 chr7B 81.188 606 95 10 1975 2567 704548720 704549319 1.510000e-128 470.0
15 TraesCS7A01G523400 chr7B 78.529 680 125 15 1094 1763 704547938 704548606 9.250000e-116 427.0
16 TraesCS7A01G523400 chr7B 79.236 602 101 13 1088 1674 704289645 704290237 7.250000e-107 398.0
17 TraesCS7A01G523400 chr7B 77.811 667 118 22 1087 1738 704637418 704636767 5.640000e-103 385.0
18 TraesCS7A01G523400 chr7B 78.361 610 106 18 1087 1683 704318141 704317545 4.390000e-99 372.0
19 TraesCS7A01G523400 chr7B 78.188 596 100 18 1094 1674 728933812 728934392 1.590000e-93 353.0
20 TraesCS7A01G523400 chr7D 81.967 610 89 11 1975 2570 627450629 627451231 6.950000e-137 497.0
21 TraesCS7A01G523400 chr7D 81.488 605 95 8 1975 2567 613627143 613627742 7.000000e-132 481.0
22 TraesCS7A01G523400 chr7D 80.161 620 106 10 1975 2582 613660704 613660090 7.100000e-122 448.0
23 TraesCS7A01G523400 chr7D 76.497 902 160 25 967 1830 613710750 613711637 9.180000e-121 444.0
24 TraesCS7A01G523400 chr7D 79.070 645 112 14 1080 1708 613715341 613715978 4.300000e-114 422.0
25 TraesCS7A01G523400 chr7D 79.867 601 95 18 1087 1674 613626351 613626938 2.000000e-112 416.0
26 TraesCS7A01G523400 chr7D 78.956 613 103 18 1087 1686 613661490 613660891 9.380000e-106 394.0
27 TraesCS7A01G523400 chr6B 80.029 696 115 19 1080 1757 181837696 181837007 8.990000e-136 494.0
28 TraesCS7A01G523400 chr6B 71.280 578 129 29 1106 1663 184725545 184724985 2.940000e-21 113.0
29 TraesCS7A01G523400 chr5D 75.578 389 54 29 3069 3432 344696715 344697087 1.730000e-33 154.0
30 TraesCS7A01G523400 chr5D 73.801 271 55 15 3313 3573 507767012 507766748 3.830000e-15 93.5
31 TraesCS7A01G523400 chr5D 82.143 84 11 3 3268 3350 404252322 404252402 6.460000e-08 69.4
32 TraesCS7A01G523400 chr1D 84.211 152 18 6 3236 3386 401562993 401562847 3.750000e-30 143.0
33 TraesCS7A01G523400 chr1D 74.336 339 57 20 3283 3604 462119201 462118876 2.270000e-22 117.0
34 TraesCS7A01G523400 chr1A 73.684 342 55 22 3283 3604 553980755 553980429 2.290000e-17 100.0
35 TraesCS7A01G523400 chr5A 81.000 100 17 2 3468 3566 680319607 680319705 1.070000e-10 78.7
36 TraesCS7A01G523400 chr5A 80.000 100 18 2 3468 3566 570793305 570793207 4.990000e-09 73.1
37 TraesCS7A01G523400 chr2B 79.279 111 19 4 3290 3398 656378864 656378756 1.390000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G523400 chr7A 706034357 706037960 3603 True 6656.0 6656 100.0000 1 3604 1 chr7A.!!$R2 3603
1 TraesCS7A01G523400 chr7A 705331156 705331770 614 True 436.0 436 79.8390 1975 2582 1 chr7A.!!$R1 607
2 TraesCS7A01G523400 chr7A 705502647 705503409 762 False 429.0 429 77.5480 1085 1830 1 chr7A.!!$F1 745
3 TraesCS7A01G523400 chrUn 293160563 293163498 2935 True 2001.5 3855 93.2005 6 2892 2 chrUn.!!$R3 2886
4 TraesCS7A01G523400 chrUn 321308158 321309456 1298 False 1753.0 1753 91.0330 6 1312 1 chrUn.!!$F1 1306
5 TraesCS7A01G523400 chrUn 409868704 409869569 865 False 577.5 1007 93.4285 2082 2892 2 chrUn.!!$F2 810
6 TraesCS7A01G523400 chr6D 97520019 97521478 1459 True 529.5 560 81.6305 1041 2570 2 chr6D.!!$R1 1529
7 TraesCS7A01G523400 chr7B 704790652 704791430 778 False 556.0 556 80.0250 999 1763 1 chr7B.!!$F1 764
8 TraesCS7A01G523400 chr7B 704289645 704291038 1393 False 459.0 520 80.9295 1088 2570 2 chr7B.!!$F3 1482
9 TraesCS7A01G523400 chr7B 704547938 704549319 1381 False 448.5 470 79.8585 1094 2567 2 chr7B.!!$F4 1473
10 TraesCS7A01G523400 chr7B 704636767 704637418 651 True 385.0 385 77.8110 1087 1738 1 chr7B.!!$R2 651
11 TraesCS7A01G523400 chr7B 704317545 704318141 596 True 372.0 372 78.3610 1087 1683 1 chr7B.!!$R1 596
12 TraesCS7A01G523400 chr7B 728933812 728934392 580 False 353.0 353 78.1880 1094 1674 1 chr7B.!!$F2 580
13 TraesCS7A01G523400 chr7D 627450629 627451231 602 False 497.0 497 81.9670 1975 2570 1 chr7D.!!$F1 595
14 TraesCS7A01G523400 chr7D 613626351 613627742 1391 False 448.5 481 80.6775 1087 2567 2 chr7D.!!$F2 1480
15 TraesCS7A01G523400 chr7D 613710750 613715978 5228 False 433.0 444 77.7835 967 1830 2 chr7D.!!$F3 863
16 TraesCS7A01G523400 chr7D 613660090 613661490 1400 True 421.0 448 79.5585 1087 2582 2 chr7D.!!$R1 1495
17 TraesCS7A01G523400 chr6B 181837007 181837696 689 True 494.0 494 80.0290 1080 1757 1 chr6B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 857 0.033504 ACATTGACGCCACTCTTCGT 59.966 50.0 0.0 0.0 42.09 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2646 2990 0.889186 ATTTTCACGGCCGAAGCACT 60.889 50.0 35.9 4.54 42.56 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.159986 CGCAAAATCACAAAATGTCGGC 60.160 45.455 0.00 0.00 0.00 5.54
23 24 2.159986 GCAAAATCACAAAATGTCGGCG 60.160 45.455 0.00 0.00 0.00 6.46
27 28 1.083489 TCACAAAATGTCGGCGGATC 58.917 50.000 7.21 0.00 0.00 3.36
34 35 1.762708 ATGTCGGCGGATCCAAAAAT 58.237 45.000 13.41 0.00 34.01 1.82
41 42 3.613910 CGGCGGATCCAAAAATTGTTTCT 60.614 43.478 13.41 0.00 34.01 2.52
100 101 5.751509 TCGTGGGAAGAATAATCGTGTATTG 59.248 40.000 0.00 0.00 0.00 1.90
129 130 8.931385 AATCATCTGTGAATTTAAAAATCGGG 57.069 30.769 0.00 0.00 38.01 5.14
130 131 7.695480 TCATCTGTGAATTTAAAAATCGGGA 57.305 32.000 0.00 0.00 0.00 5.14
131 132 8.292444 TCATCTGTGAATTTAAAAATCGGGAT 57.708 30.769 0.00 0.00 0.00 3.85
132 133 8.748412 TCATCTGTGAATTTAAAAATCGGGATT 58.252 29.630 0.00 0.00 0.00 3.01
133 134 9.369904 CATCTGTGAATTTAAAAATCGGGATTT 57.630 29.630 0.89 0.89 42.35 2.17
184 191 8.180317 AGGTTTGTAAGTTTGAAAAATGTTCG 57.820 30.769 0.00 0.00 0.00 3.95
188 195 6.983910 TGTAAGTTTGAAAAATGTTCGCAAC 58.016 32.000 0.00 0.00 0.00 4.17
189 196 6.809196 TGTAAGTTTGAAAAATGTTCGCAACT 59.191 30.769 0.00 0.00 0.00 3.16
192 199 6.761117 AGTTTGAAAAATGTTCGCAACTTTC 58.239 32.000 0.00 0.00 34.75 2.62
201 208 4.416620 TGTTCGCAACTTTCGAAAACAAT 58.583 34.783 12.41 0.00 45.79 2.71
207 214 4.317069 GCAACTTTCGAAAACAATGTTCGG 60.317 41.667 12.41 3.15 46.11 4.30
248 256 3.410960 GGCAGAAGATTAGCCCCAG 57.589 57.895 0.00 0.00 42.58 4.45
249 257 0.821301 GGCAGAAGATTAGCCCCAGC 60.821 60.000 0.00 0.00 42.58 4.85
260 268 3.548488 CCCCAGCAAGGCAAAACA 58.452 55.556 0.00 0.00 35.39 2.83
286 294 2.027100 TGTTGTTGTGTAGTGTGGTCCA 60.027 45.455 0.00 0.00 0.00 4.02
288 296 3.351794 TGTTGTGTAGTGTGGTCCAAA 57.648 42.857 0.00 0.00 0.00 3.28
295 303 6.797454 TGTGTAGTGTGGTCCAAATTTAAAC 58.203 36.000 0.00 0.00 0.00 2.01
299 307 6.644248 AGTGTGGTCCAAATTTAAACTACC 57.356 37.500 12.87 7.49 0.00 3.18
315 323 2.158726 ACTACCAAGAAACCCGCAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
321 329 4.923281 CCAAGAAACCCGCAGAAAATTTAG 59.077 41.667 0.00 0.00 0.00 1.85
325 333 1.181786 CCCGCAGAAAATTTAGGGCA 58.818 50.000 0.00 0.00 31.58 5.36
339 347 8.996651 AAATTTAGGGCAACTTACATATAGCT 57.003 30.769 0.00 0.00 0.00 3.32
351 359 4.924305 ACATATAGCTGGTTTTGCATGG 57.076 40.909 0.00 0.00 0.00 3.66
370 378 6.096141 TGCATGGTTTTCTAAGTCAAAGTCAA 59.904 34.615 0.00 0.00 0.00 3.18
374 382 9.793259 ATGGTTTTCTAAGTCAAAGTCAAGATA 57.207 29.630 0.00 0.00 0.00 1.98
403 411 6.861065 TTCTAAGTCTTGCGAAACAATCTT 57.139 33.333 0.00 0.00 37.72 2.40
408 416 3.659444 GTCTTGCGAAACAATCTTTGTCG 59.341 43.478 0.00 0.00 44.59 4.35
438 446 1.464734 TGACGTGGCTTTGTGGAAAA 58.535 45.000 0.00 0.00 0.00 2.29
447 455 2.032924 GCTTTGTGGAAAACTAGTGCGT 59.967 45.455 0.00 0.00 0.00 5.24
489 497 6.825610 TCCTCATTTACTTTTTGCATGGTTT 58.174 32.000 0.00 0.00 0.00 3.27
503 511 5.591099 TGCATGGTTTTCTCTCTTGTTTTC 58.409 37.500 0.00 0.00 0.00 2.29
678 687 9.180678 CTTTGTGTAGTGCTAAACCTAATTTTG 57.819 33.333 0.00 0.00 0.00 2.44
681 690 8.688151 TGTGTAGTGCTAAACCTAATTTTGTTT 58.312 29.630 9.21 9.21 38.22 2.83
682 691 9.177304 GTGTAGTGCTAAACCTAATTTTGTTTC 57.823 33.333 7.93 0.00 36.23 2.78
701 710 0.623324 CCCCTCCCAGACCACCATAA 60.623 60.000 0.00 0.00 0.00 1.90
702 711 0.546598 CCCTCCCAGACCACCATAAC 59.453 60.000 0.00 0.00 0.00 1.89
729 738 2.548067 CCCTTGTATGCCGTATGAGTCC 60.548 54.545 0.00 0.00 0.00 3.85
848 857 0.033504 ACATTGACGCCACTCTTCGT 59.966 50.000 0.00 0.00 42.09 3.85
866 875 6.989659 TCTTCGTGGTAAACTGAAGAGTTAT 58.010 36.000 0.00 0.00 41.87 1.89
931 940 2.466547 ACCCCGGCTACTTATACAGT 57.533 50.000 0.00 0.00 39.87 3.55
949 958 2.996621 CAGTTGTACTGTGGAAGCTAGC 59.003 50.000 6.62 6.62 41.19 3.42
950 959 2.900546 AGTTGTACTGTGGAAGCTAGCT 59.099 45.455 12.68 12.68 0.00 3.32
951 960 3.325135 AGTTGTACTGTGGAAGCTAGCTT 59.675 43.478 29.71 29.71 39.23 3.74
952 961 6.584858 CAGTTGTACTGTGGAAGCTAGCTTC 61.585 48.000 38.43 38.43 44.15 3.86
953 962 8.892488 CAGTTGTACTGTGGAAGCTAGCTTCA 62.892 46.154 42.81 31.00 45.19 3.02
960 969 3.566130 AAGCTAGCTTCAGGCAAGG 57.434 52.632 24.42 0.00 44.79 3.61
1060 1069 0.553862 ACTCCCTCTCCTCCTCCTCA 60.554 60.000 0.00 0.00 0.00 3.86
1061 1070 0.633921 CTCCCTCTCCTCCTCCTCAA 59.366 60.000 0.00 0.00 0.00 3.02
1863 1956 1.799917 CGTGCCATGATTACCGTACGT 60.800 52.381 15.21 5.08 0.00 3.57
1866 1959 2.094130 TGCCATGATTACCGTACGTGAA 60.094 45.455 15.21 8.01 0.00 3.18
1868 1961 3.558418 GCCATGATTACCGTACGTGAAAT 59.442 43.478 15.21 10.25 0.00 2.17
1869 1962 4.746115 GCCATGATTACCGTACGTGAAATA 59.254 41.667 15.21 2.11 0.00 1.40
1870 1963 5.234757 GCCATGATTACCGTACGTGAAATAA 59.765 40.000 15.21 4.44 0.00 1.40
1886 2104 5.359576 GTGAAATAACCTCCACCATGCATTA 59.640 40.000 0.00 0.00 0.00 1.90
1890 2108 2.936202 ACCTCCACCATGCATTACATC 58.064 47.619 0.00 0.00 36.64 3.06
1897 2115 2.106338 ACCATGCATTACATCCATCGGA 59.894 45.455 0.00 0.00 36.64 4.55
1899 2117 3.569277 CCATGCATTACATCCATCGGAAA 59.431 43.478 0.00 0.00 36.64 3.13
1901 2119 3.615155 TGCATTACATCCATCGGAAACA 58.385 40.909 0.00 0.00 34.34 2.83
1902 2120 4.013050 TGCATTACATCCATCGGAAACAA 58.987 39.130 0.00 0.00 34.34 2.83
1905 2123 5.288472 GCATTACATCCATCGGAAACAAAAC 59.712 40.000 0.00 0.00 34.34 2.43
1907 2125 2.882137 ACATCCATCGGAAACAAAACGT 59.118 40.909 0.00 0.00 34.34 3.99
1908 2126 3.233578 CATCCATCGGAAACAAAACGTG 58.766 45.455 0.00 0.00 34.34 4.49
1909 2127 2.290464 TCCATCGGAAACAAAACGTGT 58.710 42.857 0.00 0.00 44.64 4.49
1911 2129 3.248125 TCCATCGGAAACAAAACGTGTAC 59.752 43.478 0.00 0.00 40.60 2.90
1912 2130 2.994716 TCGGAAACAAAACGTGTACG 57.005 45.000 2.43 2.43 40.60 3.67
1962 2280 6.262944 TGACAGTTGACTTCTTTGCATGTATT 59.737 34.615 0.00 0.00 0.00 1.89
1963 2281 7.042797 ACAGTTGACTTCTTTGCATGTATTT 57.957 32.000 0.00 0.00 0.00 1.40
1964 2282 6.919662 ACAGTTGACTTCTTTGCATGTATTTG 59.080 34.615 0.00 0.00 0.00 2.32
1965 2283 5.922544 AGTTGACTTCTTTGCATGTATTTGC 59.077 36.000 0.00 0.00 43.07 3.68
1966 2284 5.710513 TGACTTCTTTGCATGTATTTGCT 57.289 34.783 0.00 0.00 43.18 3.91
1967 2285 5.702865 TGACTTCTTTGCATGTATTTGCTC 58.297 37.500 0.00 0.00 43.18 4.26
1995 2313 4.379243 CTGTTCGGGGCAGCGAGT 62.379 66.667 0.00 0.00 0.00 4.18
2584 2928 4.465512 CACAATCCGCGTGCCTGC 62.466 66.667 4.92 0.00 0.00 4.85
2585 2929 4.704833 ACAATCCGCGTGCCTGCT 62.705 61.111 4.92 0.00 0.00 4.24
2597 2941 4.340246 CCTGCTCCTGTGCCTGCA 62.340 66.667 0.00 0.00 0.00 4.41
2607 2951 2.544685 CTGTGCCTGCACTATAGACAC 58.455 52.381 21.62 5.50 46.30 3.67
2608 2952 2.167281 CTGTGCCTGCACTATAGACACT 59.833 50.000 21.62 0.00 46.30 3.55
2609 2953 2.166459 TGTGCCTGCACTATAGACACTC 59.834 50.000 21.62 0.00 46.30 3.51
2610 2954 2.166459 GTGCCTGCACTATAGACACTCA 59.834 50.000 14.77 0.85 43.12 3.41
2611 2955 2.428530 TGCCTGCACTATAGACACTCAG 59.571 50.000 6.78 5.79 0.00 3.35
2612 2956 2.801342 GCCTGCACTATAGACACTCAGC 60.801 54.545 6.78 0.00 0.00 4.26
2613 2957 2.428530 CCTGCACTATAGACACTCAGCA 59.571 50.000 6.78 4.21 0.00 4.41
2614 2958 3.490590 CCTGCACTATAGACACTCAGCAG 60.491 52.174 6.78 12.26 45.62 4.24
2615 2959 2.428530 TGCACTATAGACACTCAGCAGG 59.571 50.000 6.78 0.00 0.00 4.85
2616 2960 2.801342 GCACTATAGACACTCAGCAGGC 60.801 54.545 6.78 0.00 0.00 4.85
2617 2961 2.692557 CACTATAGACACTCAGCAGGCT 59.307 50.000 6.78 0.00 0.00 4.58
2618 2962 3.131933 CACTATAGACACTCAGCAGGCTT 59.868 47.826 6.78 0.00 0.00 4.35
2619 2963 4.339530 CACTATAGACACTCAGCAGGCTTA 59.660 45.833 6.78 0.00 0.00 3.09
2620 2964 5.010516 CACTATAGACACTCAGCAGGCTTAT 59.989 44.000 6.78 0.00 0.00 1.73
2621 2965 5.600484 ACTATAGACACTCAGCAGGCTTATT 59.400 40.000 6.78 0.00 0.00 1.40
2622 2966 3.258971 AGACACTCAGCAGGCTTATTC 57.741 47.619 0.00 0.00 0.00 1.75
2623 2967 1.929836 GACACTCAGCAGGCTTATTCG 59.070 52.381 0.00 0.00 0.00 3.34
2624 2968 1.276421 ACACTCAGCAGGCTTATTCGT 59.724 47.619 0.00 0.00 0.00 3.85
2625 2969 1.929836 CACTCAGCAGGCTTATTCGTC 59.070 52.381 0.00 0.00 0.00 4.20
2626 2970 1.827969 ACTCAGCAGGCTTATTCGTCT 59.172 47.619 0.00 0.00 0.00 4.18
2627 2971 2.200067 CTCAGCAGGCTTATTCGTCTG 58.800 52.381 0.00 0.00 39.57 3.51
2628 2972 1.550524 TCAGCAGGCTTATTCGTCTGT 59.449 47.619 0.00 0.00 38.82 3.41
2638 2982 5.813672 GGCTTATTCGTCTGTGGTTATTACA 59.186 40.000 0.00 0.00 0.00 2.41
2792 3431 2.154462 ACCACCGAGAAAATCAAGCAG 58.846 47.619 0.00 0.00 0.00 4.24
2831 5757 3.733337 AGTGGTGAAGACAACAGATGAC 58.267 45.455 0.00 0.00 44.83 3.06
2852 5778 0.751643 ACTTCGGCTTGGTTGTGCTT 60.752 50.000 0.00 0.00 0.00 3.91
2859 5785 1.134946 GCTTGGTTGTGCTTGTTGAGT 59.865 47.619 0.00 0.00 0.00 3.41
2893 5819 3.759086 GAGAATCCTTGGTTCAACCTTCC 59.241 47.826 8.40 0.00 39.58 3.46
2894 5820 3.140144 AGAATCCTTGGTTCAACCTTCCA 59.860 43.478 8.40 0.00 39.58 3.53
2895 5821 3.833559 ATCCTTGGTTCAACCTTCCAT 57.166 42.857 8.40 0.00 39.58 3.41
2896 5822 2.875296 TCCTTGGTTCAACCTTCCATG 58.125 47.619 8.40 0.00 39.58 3.66
2898 5824 2.597455 CTTGGTTCAACCTTCCATGGT 58.403 47.619 12.58 0.00 43.11 3.55
2906 5832 2.879103 ACCTTCCATGGTTACACCTG 57.121 50.000 12.58 0.00 39.58 4.00
2907 5833 2.344592 ACCTTCCATGGTTACACCTGA 58.655 47.619 12.58 0.00 39.58 3.86
2909 5835 2.618045 CCTTCCATGGTTACACCTGACC 60.618 54.545 12.58 0.00 39.58 4.02
2914 5840 2.851263 TGGTTACACCTGACCATGAC 57.149 50.000 0.00 0.00 40.85 3.06
2915 5841 2.334977 TGGTTACACCTGACCATGACT 58.665 47.619 0.00 0.00 40.85 3.41
2916 5842 2.038426 TGGTTACACCTGACCATGACTG 59.962 50.000 0.00 0.00 40.85 3.51
2917 5843 2.038557 GGTTACACCTGACCATGACTGT 59.961 50.000 0.00 0.00 34.73 3.55
2918 5844 3.259876 GGTTACACCTGACCATGACTGTA 59.740 47.826 0.00 0.00 34.73 2.74
2919 5845 4.081087 GGTTACACCTGACCATGACTGTAT 60.081 45.833 0.00 0.00 34.73 2.29
2920 5846 5.488341 GTTACACCTGACCATGACTGTATT 58.512 41.667 0.00 0.00 0.00 1.89
2922 5848 5.755409 ACACCTGACCATGACTGTATTTA 57.245 39.130 0.00 0.00 0.00 1.40
2923 5849 6.313519 ACACCTGACCATGACTGTATTTAT 57.686 37.500 0.00 0.00 0.00 1.40
2924 5850 6.115446 ACACCTGACCATGACTGTATTTATG 58.885 40.000 0.00 0.00 0.00 1.90
2925 5851 5.008019 CACCTGACCATGACTGTATTTATGC 59.992 44.000 0.00 0.00 0.00 3.14
2926 5852 4.212004 CCTGACCATGACTGTATTTATGCG 59.788 45.833 0.00 0.00 0.00 4.73
2927 5853 4.765273 TGACCATGACTGTATTTATGCGT 58.235 39.130 0.00 0.00 0.00 5.24
2929 5855 4.765273 ACCATGACTGTATTTATGCGTCA 58.235 39.130 0.00 0.00 38.75 4.35
2930 5856 5.368145 ACCATGACTGTATTTATGCGTCAT 58.632 37.500 0.00 0.00 43.78 3.06
2935 5861 5.023533 ACTGTATTTATGCGTCATGTCCT 57.976 39.130 0.00 0.00 0.00 3.85
2938 5864 5.182487 TGTATTTATGCGTCATGTCCTTGT 58.818 37.500 0.00 0.00 0.00 3.16
2939 5865 5.645929 TGTATTTATGCGTCATGTCCTTGTT 59.354 36.000 0.00 0.00 0.00 2.83
2940 5866 4.678509 TTTATGCGTCATGTCCTTGTTC 57.321 40.909 0.00 0.00 0.00 3.18
2941 5867 2.183478 ATGCGTCATGTCCTTGTTCA 57.817 45.000 0.00 0.00 0.00 3.18
2942 5868 2.183478 TGCGTCATGTCCTTGTTCAT 57.817 45.000 0.00 0.00 0.00 2.57
2943 5869 1.805943 TGCGTCATGTCCTTGTTCATG 59.194 47.619 0.00 0.00 41.64 3.07
2944 5870 2.076100 GCGTCATGTCCTTGTTCATGA 58.924 47.619 0.00 0.00 45.07 3.07
2949 5875 5.632244 TCATGTCCTTGTTCATGACATTG 57.368 39.130 0.00 9.88 44.97 2.82
2951 5877 3.489355 TGTCCTTGTTCATGACATTGCT 58.511 40.909 0.00 0.00 38.26 3.91
2953 5879 4.232221 GTCCTTGTTCATGACATTGCTTG 58.768 43.478 0.00 0.00 38.26 4.01
2954 5880 2.991190 CCTTGTTCATGACATTGCTTGC 59.009 45.455 0.00 0.00 38.26 4.01
2955 5881 3.305813 CCTTGTTCATGACATTGCTTGCT 60.306 43.478 0.00 0.00 38.26 3.91
2956 5882 3.564235 TGTTCATGACATTGCTTGCTC 57.436 42.857 0.00 0.00 32.00 4.26
2957 5883 3.151554 TGTTCATGACATTGCTTGCTCT 58.848 40.909 0.00 0.00 32.00 4.09
2958 5884 3.570975 TGTTCATGACATTGCTTGCTCTT 59.429 39.130 0.00 0.00 32.00 2.85
2959 5885 4.164294 GTTCATGACATTGCTTGCTCTTC 58.836 43.478 0.00 0.00 0.00 2.87
2961 5887 3.439129 TCATGACATTGCTTGCTCTTCAG 59.561 43.478 0.00 0.00 0.00 3.02
2963 5889 1.471684 GACATTGCTTGCTCTTCAGGG 59.528 52.381 0.00 0.00 0.00 4.45
2964 5890 1.202976 ACATTGCTTGCTCTTCAGGGT 60.203 47.619 0.00 0.00 0.00 4.34
2965 5891 1.201647 CATTGCTTGCTCTTCAGGGTG 59.798 52.381 0.00 0.00 0.00 4.61
2966 5892 0.473755 TTGCTTGCTCTTCAGGGTGA 59.526 50.000 0.00 0.00 0.00 4.02
2967 5893 0.473755 TGCTTGCTCTTCAGGGTGAA 59.526 50.000 0.00 0.00 34.79 3.18
2980 5906 2.799176 GGTGAAGCCCCAATAGCTG 58.201 57.895 0.00 0.00 40.49 4.24
2981 5907 0.255890 GGTGAAGCCCCAATAGCTGA 59.744 55.000 0.00 0.00 40.49 4.26
2982 5908 1.673168 GTGAAGCCCCAATAGCTGAG 58.327 55.000 0.00 0.00 40.49 3.35
2984 5910 0.107017 GAAGCCCCAATAGCTGAGCA 60.107 55.000 7.39 0.00 40.49 4.26
2985 5911 0.554792 AAGCCCCAATAGCTGAGCAT 59.445 50.000 7.39 0.00 40.49 3.79
2986 5912 0.110104 AGCCCCAATAGCTGAGCATC 59.890 55.000 7.39 0.00 39.69 3.91
2997 5923 1.517361 TGAGCATCAGCGGTTCGAT 59.483 52.632 0.00 0.00 42.56 3.59
2998 5924 0.108186 TGAGCATCAGCGGTTCGATT 60.108 50.000 0.00 0.00 42.56 3.34
2999 5925 2.334472 TGAGCATCAGCGGTTCGATTG 61.334 52.381 0.00 0.00 42.56 2.67
3000 5926 2.383170 GCATCAGCGGTTCGATTGA 58.617 52.632 0.00 0.00 0.00 2.57
3002 5928 0.302890 CATCAGCGGTTCGATTGAGC 59.697 55.000 0.00 0.00 0.00 4.26
3003 5929 1.148157 ATCAGCGGTTCGATTGAGCG 61.148 55.000 2.96 2.96 40.64 5.03
3004 5930 1.805539 CAGCGGTTCGATTGAGCGA 60.806 57.895 11.06 0.00 40.15 4.93
3007 5933 1.145759 GCGGTTCGATTGAGCGATGA 61.146 55.000 11.06 0.00 40.35 2.92
3008 5934 1.491670 CGGTTCGATTGAGCGATGAT 58.508 50.000 1.07 0.00 40.35 2.45
3009 5935 2.661594 CGGTTCGATTGAGCGATGATA 58.338 47.619 1.07 0.00 40.35 2.15
3010 5936 2.658802 CGGTTCGATTGAGCGATGATAG 59.341 50.000 1.07 0.00 40.35 2.08
3012 5938 2.354109 TCGATTGAGCGATGATAGCC 57.646 50.000 0.00 0.00 35.01 3.93
3013 5939 1.067565 TCGATTGAGCGATGATAGCCC 60.068 52.381 0.00 0.00 35.01 5.19
3014 5940 1.337167 CGATTGAGCGATGATAGCCCA 60.337 52.381 0.00 0.00 34.64 5.36
3015 5941 2.676176 CGATTGAGCGATGATAGCCCAT 60.676 50.000 0.00 0.00 34.64 4.00
3018 5944 0.321034 GAGCGATGATAGCCCATGCA 60.321 55.000 0.00 0.00 41.13 3.96
3019 5945 0.327259 AGCGATGATAGCCCATGCAT 59.673 50.000 0.00 0.00 41.13 3.96
3020 5946 0.450583 GCGATGATAGCCCATGCATG 59.549 55.000 20.19 20.19 41.13 4.06
3021 5947 1.817357 CGATGATAGCCCATGCATGT 58.183 50.000 24.58 9.62 41.13 3.21
3022 5948 1.736126 CGATGATAGCCCATGCATGTC 59.264 52.381 24.58 15.38 41.13 3.06
3023 5949 1.736126 GATGATAGCCCATGCATGTCG 59.264 52.381 24.58 15.17 41.13 4.35
3024 5950 0.469494 TGATAGCCCATGCATGTCGT 59.531 50.000 24.58 10.99 41.13 4.34
3026 5952 1.949525 GATAGCCCATGCATGTCGTTT 59.050 47.619 24.58 7.13 41.13 3.60
3027 5953 1.832883 TAGCCCATGCATGTCGTTTT 58.167 45.000 24.58 7.17 41.13 2.43
3028 5954 0.527565 AGCCCATGCATGTCGTTTTC 59.472 50.000 24.58 6.04 41.13 2.29
3029 5955 0.527565 GCCCATGCATGTCGTTTTCT 59.472 50.000 24.58 0.00 37.47 2.52
3030 5956 1.067635 GCCCATGCATGTCGTTTTCTT 60.068 47.619 24.58 0.00 37.47 2.52
3031 5957 2.867429 CCCATGCATGTCGTTTTCTTC 58.133 47.619 24.58 0.00 0.00 2.87
3032 5958 2.415893 CCCATGCATGTCGTTTTCTTCC 60.416 50.000 24.58 0.00 0.00 3.46
3034 5960 0.871722 TGCATGTCGTTTTCTTCCGG 59.128 50.000 0.00 0.00 0.00 5.14
3035 5961 0.168128 GCATGTCGTTTTCTTCCGGG 59.832 55.000 0.00 0.00 0.00 5.73
3036 5962 1.803334 CATGTCGTTTTCTTCCGGGA 58.197 50.000 0.00 0.00 0.00 5.14
3037 5963 1.732259 CATGTCGTTTTCTTCCGGGAG 59.268 52.381 2.10 2.10 0.00 4.30
3051 5977 2.234300 CGGGAGGCGCTATTTAAGAA 57.766 50.000 7.64 0.00 0.00 2.52
3053 5979 2.223971 CGGGAGGCGCTATTTAAGAAGA 60.224 50.000 7.64 0.00 0.00 2.87
3054 5980 3.740141 CGGGAGGCGCTATTTAAGAAGAA 60.740 47.826 7.64 0.00 0.00 2.52
3055 5981 3.560481 GGGAGGCGCTATTTAAGAAGAAC 59.440 47.826 7.64 0.00 0.00 3.01
3057 5983 4.443621 GAGGCGCTATTTAAGAAGAACCT 58.556 43.478 7.64 0.00 0.00 3.50
3060 5986 5.710567 AGGCGCTATTTAAGAAGAACCTTTT 59.289 36.000 7.64 0.00 0.00 2.27
3061 5987 6.208797 AGGCGCTATTTAAGAAGAACCTTTTT 59.791 34.615 7.64 0.00 0.00 1.94
3064 5990 7.295930 CGCTATTTAAGAAGAACCTTTTTCGT 58.704 34.615 0.00 0.00 0.00 3.85
3065 5991 8.437742 CGCTATTTAAGAAGAACCTTTTTCGTA 58.562 33.333 0.00 0.00 0.00 3.43
3068 5994 7.556733 TTTAAGAAGAACCTTTTTCGTAGCA 57.443 32.000 0.00 0.00 0.00 3.49
3069 5995 5.419760 AAGAAGAACCTTTTTCGTAGCAC 57.580 39.130 0.00 0.00 0.00 4.40
3070 5996 4.704965 AGAAGAACCTTTTTCGTAGCACT 58.295 39.130 0.00 0.00 0.00 4.40
3071 5997 5.123936 AGAAGAACCTTTTTCGTAGCACTT 58.876 37.500 0.00 0.00 0.00 3.16
3072 5998 5.589050 AGAAGAACCTTTTTCGTAGCACTTT 59.411 36.000 0.00 0.00 0.00 2.66
3073 5999 6.764560 AGAAGAACCTTTTTCGTAGCACTTTA 59.235 34.615 0.00 0.00 0.00 1.85
3075 6001 6.053650 AGAACCTTTTTCGTAGCACTTTAGT 58.946 36.000 0.00 0.00 0.00 2.24
3076 6002 6.541278 AGAACCTTTTTCGTAGCACTTTAGTT 59.459 34.615 0.00 0.00 0.00 2.24
3077 6003 7.712205 AGAACCTTTTTCGTAGCACTTTAGTTA 59.288 33.333 0.00 0.00 0.00 2.24
3079 6005 6.762661 ACCTTTTTCGTAGCACTTTAGTTACA 59.237 34.615 0.00 0.00 0.00 2.41
3080 6006 7.443272 ACCTTTTTCGTAGCACTTTAGTTACAT 59.557 33.333 0.00 0.00 0.00 2.29
3081 6007 7.744715 CCTTTTTCGTAGCACTTTAGTTACATG 59.255 37.037 0.00 0.00 0.00 3.21
3082 6008 7.718272 TTTTCGTAGCACTTTAGTTACATGT 57.282 32.000 2.69 2.69 0.00 3.21
3083 6009 8.815141 TTTTCGTAGCACTTTAGTTACATGTA 57.185 30.769 0.08 0.08 0.00 2.29
3084 6010 8.815141 TTTCGTAGCACTTTAGTTACATGTAA 57.185 30.769 14.35 14.35 0.00 2.41
3085 6011 8.456904 TTCGTAGCACTTTAGTTACATGTAAG 57.543 34.615 18.56 10.82 0.00 2.34
3088 6014 6.946229 AGCACTTTAGTTACATGTAAGTCG 57.054 37.500 25.59 17.93 31.68 4.18
3089 6015 6.453092 AGCACTTTAGTTACATGTAAGTCGT 58.547 36.000 25.59 18.45 31.68 4.34
3090 6016 6.927381 AGCACTTTAGTTACATGTAAGTCGTT 59.073 34.615 25.59 9.33 31.68 3.85
3091 6017 7.440255 AGCACTTTAGTTACATGTAAGTCGTTT 59.560 33.333 25.59 9.64 31.68 3.60
3092 6018 8.702438 GCACTTTAGTTACATGTAAGTCGTTTA 58.298 33.333 25.59 8.66 31.68 2.01
3107 6033 9.251792 GTAAGTCGTTTAAATTCAAATTTGGGT 57.748 29.630 17.90 4.53 38.90 4.51
3109 6035 9.819267 AAGTCGTTTAAATTCAAATTTGGGTAA 57.181 25.926 17.90 5.84 38.90 2.85
3110 6036 9.471084 AGTCGTTTAAATTCAAATTTGGGTAAG 57.529 29.630 17.90 2.36 38.90 2.34
3111 6037 9.251792 GTCGTTTAAATTCAAATTTGGGTAAGT 57.748 29.630 17.90 2.02 38.90 2.24
3112 6038 9.465985 TCGTTTAAATTCAAATTTGGGTAAGTC 57.534 29.630 17.90 3.26 38.90 3.01
3113 6039 9.250624 CGTTTAAATTCAAATTTGGGTAAGTCA 57.749 29.630 17.90 0.00 38.90 3.41
3122 6048 8.700051 TCAAATTTGGGTAAGTCAATTTTCTCA 58.300 29.630 17.90 0.00 30.29 3.27
3123 6049 8.764287 CAAATTTGGGTAAGTCAATTTTCTCAC 58.236 33.333 10.49 0.00 30.29 3.51
3124 6050 6.399639 TTTGGGTAAGTCAATTTTCTCACC 57.600 37.500 0.00 0.00 0.00 4.02
3125 6051 4.069304 TGGGTAAGTCAATTTTCTCACCG 58.931 43.478 0.00 0.00 0.00 4.94
3126 6052 4.070009 GGGTAAGTCAATTTTCTCACCGT 58.930 43.478 0.00 0.00 0.00 4.83
3127 6053 4.517832 GGGTAAGTCAATTTTCTCACCGTT 59.482 41.667 0.00 0.00 0.00 4.44
3128 6054 5.449304 GGTAAGTCAATTTTCTCACCGTTG 58.551 41.667 0.00 0.00 0.00 4.10
3129 6055 5.237779 GGTAAGTCAATTTTCTCACCGTTGA 59.762 40.000 0.00 0.00 0.00 3.18
3130 6056 6.072673 GGTAAGTCAATTTTCTCACCGTTGAT 60.073 38.462 0.00 0.00 32.19 2.57
3131 6057 6.391227 AAGTCAATTTTCTCACCGTTGATT 57.609 33.333 0.00 0.00 32.19 2.57
3133 6059 5.765182 AGTCAATTTTCTCACCGTTGATTCT 59.235 36.000 0.00 0.00 32.19 2.40
3134 6060 6.263168 AGTCAATTTTCTCACCGTTGATTCTT 59.737 34.615 0.00 0.00 32.19 2.52
3135 6061 6.918022 GTCAATTTTCTCACCGTTGATTCTTT 59.082 34.615 0.00 0.00 32.19 2.52
3136 6062 7.435192 GTCAATTTTCTCACCGTTGATTCTTTT 59.565 33.333 0.00 0.00 32.19 2.27
3137 6063 7.434897 TCAATTTTCTCACCGTTGATTCTTTTG 59.565 33.333 0.00 0.00 0.00 2.44
3138 6064 5.828299 TTTCTCACCGTTGATTCTTTTGT 57.172 34.783 0.00 0.00 0.00 2.83
3141 6067 4.878971 TCTCACCGTTGATTCTTTTGTCAA 59.121 37.500 0.00 0.00 32.31 3.18
3142 6068 5.007626 TCTCACCGTTGATTCTTTTGTCAAG 59.992 40.000 0.00 0.00 35.22 3.02
3143 6069 4.878971 TCACCGTTGATTCTTTTGTCAAGA 59.121 37.500 0.00 0.00 35.22 3.02
3144 6070 5.530915 TCACCGTTGATTCTTTTGTCAAGAT 59.469 36.000 0.00 0.00 35.22 2.40
3145 6071 6.039270 TCACCGTTGATTCTTTTGTCAAGATT 59.961 34.615 0.00 0.00 35.22 2.40
3146 6072 6.697019 CACCGTTGATTCTTTTGTCAAGATTT 59.303 34.615 0.00 0.00 35.22 2.17
3147 6073 7.860373 CACCGTTGATTCTTTTGTCAAGATTTA 59.140 33.333 0.00 0.00 35.22 1.40
3148 6074 8.576442 ACCGTTGATTCTTTTGTCAAGATTTAT 58.424 29.630 0.00 0.00 35.22 1.40
3151 6077 9.415544 GTTGATTCTTTTGTCAAGATTTATGCT 57.584 29.630 0.00 0.00 35.22 3.79
3153 6079 9.985730 TGATTCTTTTGTCAAGATTTATGCTTT 57.014 25.926 0.00 0.00 0.00 3.51
3196 6122 8.956426 TCTTAAGTTGATTTTTGACTTGTCACT 58.044 29.630 2.62 0.00 35.43 3.41
3197 6123 9.226345 CTTAAGTTGATTTTTGACTTGTCACTC 57.774 33.333 2.62 0.18 35.43 3.51
3198 6124 7.396540 AAGTTGATTTTTGACTTGTCACTCT 57.603 32.000 2.62 0.00 32.73 3.24
3200 6126 7.830739 AGTTGATTTTTGACTTGTCACTCTTT 58.169 30.769 2.62 0.00 0.00 2.52
3201 6127 8.306761 AGTTGATTTTTGACTTGTCACTCTTTT 58.693 29.630 2.62 0.00 0.00 2.27
3202 6128 9.567848 GTTGATTTTTGACTTGTCACTCTTTTA 57.432 29.630 2.62 0.00 0.00 1.52
3204 6130 9.787532 TGATTTTTGACTTGTCACTCTTTTAAG 57.212 29.630 2.62 0.00 0.00 1.85
3205 6131 9.237846 GATTTTTGACTTGTCACTCTTTTAAGG 57.762 33.333 2.62 0.00 0.00 2.69
3206 6132 7.696992 TTTTGACTTGTCACTCTTTTAAGGT 57.303 32.000 2.62 0.00 0.00 3.50
3207 6133 8.795842 TTTTGACTTGTCACTCTTTTAAGGTA 57.204 30.769 2.62 0.00 0.00 3.08
3208 6134 8.795842 TTTGACTTGTCACTCTTTTAAGGTAA 57.204 30.769 2.62 0.00 0.00 2.85
3209 6135 8.795842 TTGACTTGTCACTCTTTTAAGGTAAA 57.204 30.769 2.62 0.00 0.00 2.01
3210 6136 8.974060 TGACTTGTCACTCTTTTAAGGTAAAT 57.026 30.769 0.00 0.00 0.00 1.40
3211 6137 9.052759 TGACTTGTCACTCTTTTAAGGTAAATC 57.947 33.333 0.00 0.00 0.00 2.17
3213 6139 7.929785 ACTTGTCACTCTTTTAAGGTAAATCGA 59.070 33.333 0.00 0.00 0.00 3.59
3214 6140 8.842358 TTGTCACTCTTTTAAGGTAAATCGAT 57.158 30.769 0.00 0.00 0.00 3.59
3215 6141 8.842358 TGTCACTCTTTTAAGGTAAATCGATT 57.158 30.769 4.39 4.39 0.00 3.34
3216 6142 9.280174 TGTCACTCTTTTAAGGTAAATCGATTT 57.720 29.630 25.48 25.48 0.00 2.17
3239 6165 6.575162 TTTTCCTTAGGCTGAATTCTTGAC 57.425 37.500 7.05 1.91 0.00 3.18
3240 6166 5.505181 TTCCTTAGGCTGAATTCTTGACT 57.495 39.130 7.05 9.50 0.00 3.41
3242 6168 5.248640 TCCTTAGGCTGAATTCTTGACTTG 58.751 41.667 11.55 6.64 0.00 3.16
3244 6170 2.165998 AGGCTGAATTCTTGACTTGCC 58.834 47.619 7.05 8.63 39.40 4.52
3247 6173 2.800250 CTGAATTCTTGACTTGCCCCT 58.200 47.619 7.05 0.00 0.00 4.79
3248 6174 2.490903 CTGAATTCTTGACTTGCCCCTG 59.509 50.000 7.05 0.00 0.00 4.45
3249 6175 2.158475 TGAATTCTTGACTTGCCCCTGT 60.158 45.455 7.05 0.00 0.00 4.00
3250 6176 2.683211 ATTCTTGACTTGCCCCTGTT 57.317 45.000 0.00 0.00 0.00 3.16
3252 6178 3.586470 TTCTTGACTTGCCCCTGTTTA 57.414 42.857 0.00 0.00 0.00 2.01
3253 6179 3.140325 TCTTGACTTGCCCCTGTTTAG 57.860 47.619 0.00 0.00 0.00 1.85
3254 6180 2.441750 TCTTGACTTGCCCCTGTTTAGT 59.558 45.455 0.00 0.00 0.00 2.24
3257 6183 2.706723 TGACTTGCCCCTGTTTAGTGTA 59.293 45.455 0.00 0.00 0.00 2.90
3258 6184 3.136809 TGACTTGCCCCTGTTTAGTGTAA 59.863 43.478 0.00 0.00 0.00 2.41
3259 6185 3.751518 ACTTGCCCCTGTTTAGTGTAAG 58.248 45.455 0.00 0.00 0.00 2.34
3261 6187 3.868619 TGCCCCTGTTTAGTGTAAGTT 57.131 42.857 0.00 0.00 0.00 2.66
3262 6188 3.482436 TGCCCCTGTTTAGTGTAAGTTG 58.518 45.455 0.00 0.00 0.00 3.16
3263 6189 3.136809 TGCCCCTGTTTAGTGTAAGTTGA 59.863 43.478 0.00 0.00 0.00 3.18
3264 6190 4.202524 TGCCCCTGTTTAGTGTAAGTTGAT 60.203 41.667 0.00 0.00 0.00 2.57
3266 6192 5.243060 GCCCCTGTTTAGTGTAAGTTGATTT 59.757 40.000 0.00 0.00 0.00 2.17
3307 6233 2.838637 TTTGACTTCCCCCTTGTTGT 57.161 45.000 0.00 0.00 0.00 3.32
3308 6234 2.065899 TTGACTTCCCCCTTGTTGTG 57.934 50.000 0.00 0.00 0.00 3.33
3309 6235 0.184933 TGACTTCCCCCTTGTTGTGG 59.815 55.000 0.00 0.00 0.00 4.17
3310 6236 0.185175 GACTTCCCCCTTGTTGTGGT 59.815 55.000 0.00 0.00 0.00 4.16
3311 6237 1.422402 GACTTCCCCCTTGTTGTGGTA 59.578 52.381 0.00 0.00 0.00 3.25
3312 6238 1.854280 ACTTCCCCCTTGTTGTGGTAA 59.146 47.619 0.00 0.00 0.00 2.85
3313 6239 2.158519 ACTTCCCCCTTGTTGTGGTAAG 60.159 50.000 0.00 0.00 0.00 2.34
3314 6240 1.525175 TCCCCCTTGTTGTGGTAAGT 58.475 50.000 0.00 0.00 0.00 2.24
3318 6244 3.496331 CCCCTTGTTGTGGTAAGTCAAT 58.504 45.455 0.00 0.00 0.00 2.57
3321 6247 5.163353 CCCCTTGTTGTGGTAAGTCAATTTT 60.163 40.000 0.00 0.00 0.00 1.82
3322 6248 6.345298 CCCTTGTTGTGGTAAGTCAATTTTT 58.655 36.000 0.00 0.00 0.00 1.94
3324 6250 7.264947 CCTTGTTGTGGTAAGTCAATTTTTCT 58.735 34.615 0.00 0.00 0.00 2.52
3325 6251 8.410141 CCTTGTTGTGGTAAGTCAATTTTTCTA 58.590 33.333 0.00 0.00 0.00 2.10
3328 6254 9.743057 TGTTGTGGTAAGTCAATTTTTCTATTG 57.257 29.630 0.00 0.00 36.95 1.90
3329 6255 9.191995 GTTGTGGTAAGTCAATTTTTCTATTGG 57.808 33.333 0.00 0.00 36.41 3.16
3330 6256 7.891561 TGTGGTAAGTCAATTTTTCTATTGGG 58.108 34.615 0.00 0.00 36.41 4.12
3331 6257 6.811665 GTGGTAAGTCAATTTTTCTATTGGGC 59.188 38.462 0.00 0.00 36.41 5.36
3332 6258 6.723977 TGGTAAGTCAATTTTTCTATTGGGCT 59.276 34.615 0.00 0.00 36.41 5.19
3333 6259 7.234577 TGGTAAGTCAATTTTTCTATTGGGCTT 59.765 33.333 0.00 0.00 36.41 4.35
3334 6260 7.545615 GGTAAGTCAATTTTTCTATTGGGCTTG 59.454 37.037 0.00 0.00 36.41 4.01
3335 6261 6.916360 AGTCAATTTTTCTATTGGGCTTGA 57.084 33.333 0.00 0.00 36.41 3.02
3336 6262 7.301868 AGTCAATTTTTCTATTGGGCTTGAA 57.698 32.000 0.00 0.00 36.41 2.69
3338 6264 6.091305 GTCAATTTTTCTATTGGGCTTGAAGC 59.909 38.462 9.04 9.04 36.11 3.86
3348 6274 2.624169 GCTTGAAGCCCGTTACACA 58.376 52.632 5.74 0.00 34.48 3.72
3349 6275 1.165270 GCTTGAAGCCCGTTACACAT 58.835 50.000 5.74 0.00 34.48 3.21
3351 6277 2.351726 GCTTGAAGCCCGTTACACATAG 59.648 50.000 5.74 0.00 34.48 2.23
3352 6278 3.596214 CTTGAAGCCCGTTACACATAGT 58.404 45.455 0.00 0.00 0.00 2.12
3353 6279 3.688694 TGAAGCCCGTTACACATAGTT 57.311 42.857 0.00 0.00 0.00 2.24
3354 6280 4.010667 TGAAGCCCGTTACACATAGTTT 57.989 40.909 0.00 0.00 0.00 2.66
3355 6281 4.391155 TGAAGCCCGTTACACATAGTTTT 58.609 39.130 0.00 0.00 0.00 2.43
3356 6282 4.822896 TGAAGCCCGTTACACATAGTTTTT 59.177 37.500 0.00 0.00 0.00 1.94
3358 6284 4.648651 AGCCCGTTACACATAGTTTTTCT 58.351 39.130 0.00 0.00 0.00 2.52
3360 6286 5.533528 AGCCCGTTACACATAGTTTTTCTTT 59.466 36.000 0.00 0.00 0.00 2.52
3361 6287 5.627780 GCCCGTTACACATAGTTTTTCTTTG 59.372 40.000 0.00 0.00 0.00 2.77
3362 6288 6.731164 CCCGTTACACATAGTTTTTCTTTGT 58.269 36.000 0.00 0.00 38.50 2.83
3363 6289 7.520292 GCCCGTTACACATAGTTTTTCTTTGTA 60.520 37.037 0.00 0.00 36.48 2.41
3364 6290 8.508875 CCCGTTACACATAGTTTTTCTTTGTAT 58.491 33.333 0.00 0.00 36.48 2.29
3365 6291 9.325150 CCGTTACACATAGTTTTTCTTTGTATG 57.675 33.333 0.00 0.00 36.48 2.39
3366 6292 8.837059 CGTTACACATAGTTTTTCTTTGTATGC 58.163 33.333 0.00 0.00 36.48 3.14
3367 6293 9.893305 GTTACACATAGTTTTTCTTTGTATGCT 57.107 29.630 0.00 0.00 36.48 3.79
3434 6360 9.814899 TTCTACATGGGTATATTTTTGCATTTG 57.185 29.630 0.00 0.00 0.00 2.32
3435 6361 8.420222 TCTACATGGGTATATTTTTGCATTTGG 58.580 33.333 0.00 0.00 0.00 3.28
3436 6362 7.192852 ACATGGGTATATTTTTGCATTTGGA 57.807 32.000 0.00 0.00 0.00 3.53
3437 6363 7.804147 ACATGGGTATATTTTTGCATTTGGAT 58.196 30.769 0.00 0.00 0.00 3.41
3439 6365 7.429374 TGGGTATATTTTTGCATTTGGATGA 57.571 32.000 0.00 0.00 35.16 2.92
3440 6366 7.499292 TGGGTATATTTTTGCATTTGGATGAG 58.501 34.615 0.00 0.00 35.16 2.90
3441 6367 7.125507 TGGGTATATTTTTGCATTTGGATGAGT 59.874 33.333 0.00 0.00 35.16 3.41
3442 6368 7.439056 GGGTATATTTTTGCATTTGGATGAGTG 59.561 37.037 0.00 0.00 35.16 3.51
3444 6370 4.952071 TTTTTGCATTTGGATGAGTGGA 57.048 36.364 0.00 0.00 35.16 4.02
3446 6372 2.583024 TGCATTTGGATGAGTGGACA 57.417 45.000 0.00 0.00 35.16 4.02
3447 6373 2.161855 TGCATTTGGATGAGTGGACAC 58.838 47.619 0.00 0.00 35.16 3.67
3448 6374 2.161855 GCATTTGGATGAGTGGACACA 58.838 47.619 5.14 0.00 35.16 3.72
3451 6377 6.054362 GCATTTGGATGAGTGGACACACAA 62.054 45.833 6.66 0.86 40.62 3.33
3452 6378 7.293939 GCATTTGGATGAGTGGACACACAAT 62.294 44.000 6.66 0.00 40.62 2.71
3454 6380 9.392705 GCATTTGGATGAGTGGACACACAATTA 62.393 40.741 6.66 0.00 40.62 1.40
3466 6392 9.031360 GTGGACACACAATTACTATACAGTATG 57.969 37.037 3.03 0.00 46.90 2.39
3500 6426 5.679734 CACTAGAGTGTCAAAATTGCACT 57.320 39.130 17.20 17.20 43.24 4.40
3501 6427 6.785488 CACTAGAGTGTCAAAATTGCACTA 57.215 37.500 17.20 7.56 41.83 2.74
3502 6428 7.369803 CACTAGAGTGTCAAAATTGCACTAT 57.630 36.000 17.20 16.69 41.83 2.12
3503 6429 7.810658 CACTAGAGTGTCAAAATTGCACTATT 58.189 34.615 17.20 13.06 41.83 1.73
3504 6430 8.935844 CACTAGAGTGTCAAAATTGCACTATTA 58.064 33.333 17.20 13.33 41.83 0.98
3505 6431 9.672673 ACTAGAGTGTCAAAATTGCACTATTAT 57.327 29.630 17.20 10.17 41.83 1.28
3509 6435 9.173939 GAGTGTCAAAATTGCACTATTATATGC 57.826 33.333 17.20 0.00 41.83 3.14
3510 6436 8.906867 AGTGTCAAAATTGCACTATTATATGCT 58.093 29.630 16.28 0.00 40.83 3.79
3511 6437 9.520204 GTGTCAAAATTGCACTATTATATGCTT 57.480 29.630 11.09 0.00 42.55 3.91
3521 6447 8.611757 TGCACTATTATATGCTTATTATTGGCG 58.388 33.333 0.00 0.00 42.55 5.69
3522 6448 8.612619 GCACTATTATATGCTTATTATTGGCGT 58.387 33.333 0.00 0.00 38.84 5.68
3544 6470 9.683651 GGCGTATTTAAAATGTTTAATTTCAGC 57.316 29.630 0.00 0.00 0.00 4.26
3552 6478 8.419076 AAAATGTTTAATTTCAGCACGAAGTT 57.581 26.923 0.00 2.93 41.61 2.66
3553 6479 6.991485 ATGTTTAATTTCAGCACGAAGTTG 57.009 33.333 6.83 0.00 41.61 3.16
3554 6480 5.885881 TGTTTAATTTCAGCACGAAGTTGT 58.114 33.333 6.83 0.00 41.61 3.32
3555 6481 7.017498 TGTTTAATTTCAGCACGAAGTTGTA 57.983 32.000 6.83 0.00 41.61 2.41
3556 6482 7.644490 TGTTTAATTTCAGCACGAAGTTGTAT 58.356 30.769 6.83 0.00 41.61 2.29
3557 6483 7.589587 TGTTTAATTTCAGCACGAAGTTGTATG 59.410 33.333 6.83 0.00 41.61 2.39
3558 6484 5.689383 AATTTCAGCACGAAGTTGTATGT 57.311 34.783 0.00 0.00 41.61 2.29
3559 6485 6.795098 AATTTCAGCACGAAGTTGTATGTA 57.205 33.333 0.00 0.00 41.61 2.29
3560 6486 6.795098 ATTTCAGCACGAAGTTGTATGTAA 57.205 33.333 0.00 0.00 41.61 2.41
3561 6487 5.839262 TTCAGCACGAAGTTGTATGTAAG 57.161 39.130 0.00 0.00 41.61 2.34
3562 6488 4.878439 TCAGCACGAAGTTGTATGTAAGT 58.122 39.130 0.00 0.00 41.61 2.24
3563 6489 5.294356 TCAGCACGAAGTTGTATGTAAGTT 58.706 37.500 0.00 0.00 41.61 2.66
3564 6490 5.756347 TCAGCACGAAGTTGTATGTAAGTTT 59.244 36.000 0.00 0.00 41.61 2.66
3565 6491 6.259167 TCAGCACGAAGTTGTATGTAAGTTTT 59.741 34.615 0.00 0.00 41.61 2.43
3566 6492 6.910433 CAGCACGAAGTTGTATGTAAGTTTTT 59.090 34.615 0.00 0.00 41.61 1.94
3596 6522 9.679661 ATTTCATTTTGTTTGTTCTTAAAGGGT 57.320 25.926 0.00 0.00 0.00 4.34
3603 6529 8.763984 TTGTTTGTTCTTAAAGGGTAATACCA 57.236 30.769 12.03 0.00 41.02 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.304257 CCGACATTTTGTGATTTTGCGA 58.696 40.909 0.00 0.00 0.00 5.10
1 2 2.159986 GCCGACATTTTGTGATTTTGCG 60.160 45.455 0.00 0.00 0.00 4.85
2 3 2.159986 CGCCGACATTTTGTGATTTTGC 60.160 45.455 0.00 0.00 0.00 3.68
3 4 2.408032 CCGCCGACATTTTGTGATTTTG 59.592 45.455 0.00 0.00 0.00 2.44
4 5 2.294791 TCCGCCGACATTTTGTGATTTT 59.705 40.909 0.00 0.00 0.00 1.82
11 12 0.808125 TTGGATCCGCCGACATTTTG 59.192 50.000 7.39 0.00 40.66 2.44
16 17 1.201181 CAATTTTTGGATCCGCCGACA 59.799 47.619 7.39 0.00 40.66 4.35
20 21 3.925379 AGAAACAATTTTTGGATCCGCC 58.075 40.909 7.39 0.00 34.12 6.13
76 77 3.880047 ACACGATTATTCTTCCCACGA 57.120 42.857 0.00 0.00 0.00 4.35
77 78 5.751509 TCAATACACGATTATTCTTCCCACG 59.248 40.000 0.00 0.00 0.00 4.94
90 91 8.267620 TCACAGATGATTTTTCAATACACGAT 57.732 30.769 0.00 0.00 0.00 3.73
107 108 8.931385 AATCCCGATTTTTAAATTCACAGATG 57.069 30.769 0.00 0.00 0.00 2.90
108 109 9.942850 AAAATCCCGATTTTTAAATTCACAGAT 57.057 25.926 9.16 0.00 45.67 2.90
159 166 7.201487 GCGAACATTTTTCAAACTTACAAACCT 60.201 33.333 0.00 0.00 0.00 3.50
160 167 6.897663 GCGAACATTTTTCAAACTTACAAACC 59.102 34.615 0.00 0.00 0.00 3.27
165 172 7.216920 AGTTGCGAACATTTTTCAAACTTAC 57.783 32.000 0.00 0.00 0.00 2.34
166 173 7.820044 AAGTTGCGAACATTTTTCAAACTTA 57.180 28.000 9.77 0.00 35.25 2.24
167 174 6.720012 AAGTTGCGAACATTTTTCAAACTT 57.280 29.167 7.20 7.20 33.67 2.66
169 176 5.666454 CGAAAGTTGCGAACATTTTTCAAAC 59.334 36.000 0.00 0.00 32.33 2.93
171 178 5.096169 TCGAAAGTTGCGAACATTTTTCAA 58.904 33.333 2.63 0.00 34.45 2.69
175 182 5.346281 TGTTTTCGAAAGTTGCGAACATTTT 59.654 32.000 18.36 0.00 46.08 1.82
178 185 4.022464 TGTTTTCGAAAGTTGCGAACAT 57.978 36.364 18.36 0.00 46.08 2.71
192 199 3.619233 AACTCCCGAACATTGTTTTCG 57.381 42.857 3.08 3.78 44.40 3.46
223 230 1.511613 CTAATCTTCTGCCCCTCCCA 58.488 55.000 0.00 0.00 0.00 4.37
232 239 2.295885 CTTGCTGGGGCTAATCTTCTG 58.704 52.381 0.00 0.00 39.59 3.02
233 240 1.213926 CCTTGCTGGGGCTAATCTTCT 59.786 52.381 0.00 0.00 39.59 2.85
260 268 3.004629 CCACACTACACAACAACATGCAT 59.995 43.478 0.00 0.00 0.00 3.96
286 294 6.183360 TGCGGGTTTCTTGGTAGTTTAAATTT 60.183 34.615 0.00 0.00 0.00 1.82
288 296 4.828387 TGCGGGTTTCTTGGTAGTTTAAAT 59.172 37.500 0.00 0.00 0.00 1.40
295 303 2.178912 TTCTGCGGGTTTCTTGGTAG 57.821 50.000 0.00 0.00 0.00 3.18
299 307 4.923281 CCTAAATTTTCTGCGGGTTTCTTG 59.077 41.667 0.00 0.00 0.00 3.02
315 323 7.448469 CCAGCTATATGTAAGTTGCCCTAAATT 59.552 37.037 0.00 0.00 0.00 1.82
321 329 4.086706 ACCAGCTATATGTAAGTTGCCC 57.913 45.455 0.00 0.00 0.00 5.36
325 333 7.416664 CCATGCAAAACCAGCTATATGTAAGTT 60.417 37.037 0.00 0.00 0.00 2.66
339 347 5.127845 TGACTTAGAAAACCATGCAAAACCA 59.872 36.000 0.00 0.00 0.00 3.67
385 393 4.552767 CGACAAAGATTGTTTCGCAAGACT 60.553 41.667 0.00 0.00 46.65 3.24
403 411 5.503498 CCACGTCAAAGTAAAATTCGACAA 58.497 37.500 0.00 0.00 0.00 3.18
408 416 5.746721 ACAAAGCCACGTCAAAGTAAAATTC 59.253 36.000 0.00 0.00 0.00 2.17
438 446 4.755123 ACTATTTGCAGAAAACGCACTAGT 59.245 37.500 0.00 0.00 39.59 2.57
447 455 5.620206 TGAGGAGTGACTATTTGCAGAAAA 58.380 37.500 0.00 0.00 0.00 2.29
481 489 5.591099 TGAAAACAAGAGAGAAAACCATGC 58.409 37.500 0.00 0.00 0.00 4.06
588 597 8.738199 TCAAAAGAGTCACTTACGTATTACAG 57.262 34.615 0.00 0.00 37.93 2.74
598 607 8.662141 GTTTACACAACTCAAAAGAGTCACTTA 58.338 33.333 0.00 0.00 37.93 2.24
639 648 4.944930 ACTACACAAAGTTGCACTTGGTAA 59.055 37.500 8.23 1.81 40.25 2.85
640 649 4.334203 CACTACACAAAGTTGCACTTGGTA 59.666 41.667 8.23 7.82 40.25 3.25
641 650 3.128589 CACTACACAAAGTTGCACTTGGT 59.871 43.478 7.16 5.56 42.87 3.67
655 664 7.811117 ACAAAATTAGGTTTAGCACTACACA 57.189 32.000 0.00 0.00 0.00 3.72
678 687 1.379146 GTGGTCTGGGAGGGGAAAC 59.621 63.158 0.00 0.00 0.00 2.78
681 690 1.532894 TATGGTGGTCTGGGAGGGGA 61.533 60.000 0.00 0.00 0.00 4.81
682 691 0.623324 TTATGGTGGTCTGGGAGGGG 60.623 60.000 0.00 0.00 0.00 4.79
701 710 3.857157 ACGGCATACAAGGGATATTGT 57.143 42.857 0.00 0.00 45.19 2.71
702 711 5.487433 TCATACGGCATACAAGGGATATTG 58.513 41.667 0.00 0.00 36.22 1.90
848 857 8.410141 CCACAAAAATAACTCTTCAGTTTACCA 58.590 33.333 0.00 0.00 40.16 3.25
931 940 3.926616 GAAGCTAGCTTCCACAGTACAA 58.073 45.455 37.06 0.00 44.76 2.41
948 957 3.756727 GCCTGCCTTGCCTGAAGC 61.757 66.667 0.00 0.00 44.14 3.86
949 958 2.282674 TGCCTGCCTTGCCTGAAG 60.283 61.111 0.00 0.00 0.00 3.02
950 959 2.282674 CTGCCTGCCTTGCCTGAA 60.283 61.111 0.00 0.00 0.00 3.02
987 996 4.201881 CGGTAGTACATGATGACGTCTTCA 60.202 45.833 29.45 29.45 39.11 3.02
988 997 4.280461 CGGTAGTACATGATGACGTCTTC 58.720 47.826 21.20 21.20 0.00 2.87
1566 1614 3.145551 CGGAGGTCGTCCCCGATT 61.146 66.667 18.63 0.00 46.30 3.34
1740 1791 1.089920 GCTGGTGCTTGTCGATGATT 58.910 50.000 0.00 0.00 36.03 2.57
1863 1956 3.448093 TGCATGGTGGAGGTTATTTCA 57.552 42.857 0.00 0.00 0.00 2.69
1866 1959 4.865905 TGTAATGCATGGTGGAGGTTATT 58.134 39.130 0.00 0.00 0.00 1.40
1868 1961 4.460263 GATGTAATGCATGGTGGAGGTTA 58.540 43.478 0.00 0.00 38.06 2.85
1869 1962 2.897271 TGTAATGCATGGTGGAGGTT 57.103 45.000 0.00 0.00 0.00 3.50
1870 1963 2.423373 GGATGTAATGCATGGTGGAGGT 60.423 50.000 0.00 0.00 38.06 3.85
1886 2104 2.882137 ACGTTTTGTTTCCGATGGATGT 59.118 40.909 0.00 0.00 0.00 3.06
1890 2108 2.766970 ACACGTTTTGTTTCCGATGG 57.233 45.000 0.00 0.00 33.09 3.51
1920 2138 2.011222 GTCAACCTTGTCCGTCAAACA 58.989 47.619 0.00 0.00 35.48 2.83
1923 2141 1.208535 ACTGTCAACCTTGTCCGTCAA 59.791 47.619 0.00 0.00 34.61 3.18
1932 2152 4.142381 GCAAAGAAGTCAACTGTCAACCTT 60.142 41.667 0.00 0.00 0.00 3.50
1962 2280 3.130516 CGAACAGGTCCTACATAGAGCAA 59.869 47.826 0.00 0.00 34.17 3.91
1963 2281 2.688446 CGAACAGGTCCTACATAGAGCA 59.312 50.000 0.00 0.00 34.17 4.26
1964 2282 2.034812 CCGAACAGGTCCTACATAGAGC 59.965 54.545 0.00 0.00 34.51 4.09
1965 2283 2.623889 CCCGAACAGGTCCTACATAGAG 59.376 54.545 0.00 0.00 38.74 2.43
1966 2284 2.662866 CCCGAACAGGTCCTACATAGA 58.337 52.381 0.00 0.00 38.74 1.98
1967 2285 1.687123 CCCCGAACAGGTCCTACATAG 59.313 57.143 0.00 0.00 38.74 2.23
1995 2313 4.034258 GTCGTCGCCGAGGTGTCA 62.034 66.667 6.70 0.00 45.26 3.58
2510 2854 1.834378 CCCGAGCTGCTCCTCCATA 60.834 63.158 22.97 0.00 0.00 2.74
2584 2928 6.756157 GTGTCTATAGTGCAGGCACAGGAG 62.756 54.167 24.64 17.07 45.79 3.69
2585 2929 4.996455 GTGTCTATAGTGCAGGCACAGGA 61.996 52.174 24.64 13.77 45.79 3.86
2590 2934 2.428530 CTGAGTGTCTATAGTGCAGGCA 59.571 50.000 0.00 0.00 0.00 4.75
2591 2935 2.801342 GCTGAGTGTCTATAGTGCAGGC 60.801 54.545 0.00 0.00 0.00 4.85
2593 2937 3.490590 CCTGCTGAGTGTCTATAGTGCAG 60.491 52.174 0.00 0.00 44.09 4.41
2597 2941 3.025322 AGCCTGCTGAGTGTCTATAGT 57.975 47.619 0.00 0.00 0.00 2.12
2607 2951 2.200067 CAGACGAATAAGCCTGCTGAG 58.800 52.381 0.00 0.00 0.00 3.35
2608 2952 1.550524 ACAGACGAATAAGCCTGCTGA 59.449 47.619 0.00 0.00 0.00 4.26
2609 2953 1.662629 CACAGACGAATAAGCCTGCTG 59.337 52.381 0.00 0.00 0.00 4.41
2610 2954 1.406069 CCACAGACGAATAAGCCTGCT 60.406 52.381 0.00 0.00 0.00 4.24
2611 2955 1.009829 CCACAGACGAATAAGCCTGC 58.990 55.000 0.00 0.00 0.00 4.85
2612 2956 2.386661 ACCACAGACGAATAAGCCTG 57.613 50.000 0.00 0.00 0.00 4.85
2613 2957 4.755266 ATAACCACAGACGAATAAGCCT 57.245 40.909 0.00 0.00 0.00 4.58
2614 2958 5.813672 TGTAATAACCACAGACGAATAAGCC 59.186 40.000 0.00 0.00 0.00 4.35
2615 2959 6.755141 TCTGTAATAACCACAGACGAATAAGC 59.245 38.462 1.17 0.00 45.68 3.09
2625 2969 7.334421 AGCACTACAATTCTGTAATAACCACAG 59.666 37.037 0.00 0.00 43.92 3.66
2626 2970 7.165485 AGCACTACAATTCTGTAATAACCACA 58.835 34.615 0.00 0.00 37.58 4.17
2627 2971 7.611213 AGCACTACAATTCTGTAATAACCAC 57.389 36.000 0.00 0.00 37.58 4.16
2628 2972 7.064134 CGAAGCACTACAATTCTGTAATAACCA 59.936 37.037 0.00 0.00 37.58 3.67
2638 2982 1.739067 GGCCGAAGCACTACAATTCT 58.261 50.000 0.00 0.00 42.56 2.40
2646 2990 0.889186 ATTTTCACGGCCGAAGCACT 60.889 50.000 35.90 4.54 42.56 4.40
2714 3059 4.467795 CGATGGAATATCTATGGACCAGGT 59.532 45.833 0.00 0.00 0.00 4.00
2831 5757 1.569493 CACAACCAAGCCGAAGTCG 59.431 57.895 0.00 0.00 39.44 4.18
2852 5778 3.767131 TCTCATCCATCCGTTACTCAACA 59.233 43.478 0.00 0.00 34.05 3.33
2898 5824 5.755409 AATACAGTCATGGTCAGGTGTAA 57.245 39.130 0.00 0.00 0.00 2.41
2899 5825 5.755409 AAATACAGTCATGGTCAGGTGTA 57.245 39.130 0.00 0.00 0.00 2.90
2900 5826 4.640771 AAATACAGTCATGGTCAGGTGT 57.359 40.909 0.00 0.00 0.00 4.16
2901 5827 5.008019 GCATAAATACAGTCATGGTCAGGTG 59.992 44.000 0.00 0.00 0.00 4.00
2902 5828 5.126067 GCATAAATACAGTCATGGTCAGGT 58.874 41.667 0.00 0.00 0.00 4.00
2903 5829 4.212004 CGCATAAATACAGTCATGGTCAGG 59.788 45.833 0.00 0.00 0.00 3.86
2905 5831 4.765273 ACGCATAAATACAGTCATGGTCA 58.235 39.130 0.00 0.00 0.00 4.02
2906 5832 4.808895 TGACGCATAAATACAGTCATGGTC 59.191 41.667 0.00 0.00 36.98 4.02
2907 5833 4.765273 TGACGCATAAATACAGTCATGGT 58.235 39.130 0.00 0.00 36.98 3.55
2911 5837 4.808895 GGACATGACGCATAAATACAGTCA 59.191 41.667 0.00 0.00 44.46 3.41
2912 5838 5.050490 AGGACATGACGCATAAATACAGTC 58.950 41.667 0.00 0.00 0.00 3.51
2913 5839 5.023533 AGGACATGACGCATAAATACAGT 57.976 39.130 0.00 0.00 0.00 3.55
2914 5840 5.294306 ACAAGGACATGACGCATAAATACAG 59.706 40.000 0.00 0.00 0.00 2.74
2915 5841 5.182487 ACAAGGACATGACGCATAAATACA 58.818 37.500 0.00 0.00 0.00 2.29
2916 5842 5.734855 ACAAGGACATGACGCATAAATAC 57.265 39.130 0.00 0.00 0.00 1.89
2917 5843 5.877564 TGAACAAGGACATGACGCATAAATA 59.122 36.000 0.00 0.00 0.00 1.40
2918 5844 4.699735 TGAACAAGGACATGACGCATAAAT 59.300 37.500 0.00 0.00 0.00 1.40
2919 5845 4.068599 TGAACAAGGACATGACGCATAAA 58.931 39.130 0.00 0.00 0.00 1.40
2920 5846 3.669536 TGAACAAGGACATGACGCATAA 58.330 40.909 0.00 0.00 0.00 1.90
2922 5848 2.183478 TGAACAAGGACATGACGCAT 57.817 45.000 0.00 0.00 0.00 4.73
2923 5849 1.805943 CATGAACAAGGACATGACGCA 59.194 47.619 0.00 0.00 44.28 5.24
2924 5850 2.076100 TCATGAACAAGGACATGACGC 58.924 47.619 0.00 0.00 44.86 5.19
2930 5856 3.489355 AGCAATGTCATGAACAAGGACA 58.511 40.909 0.00 12.45 44.73 4.02
2931 5857 4.232221 CAAGCAATGTCATGAACAAGGAC 58.768 43.478 0.00 0.00 42.37 3.85
2932 5858 3.305539 GCAAGCAATGTCATGAACAAGGA 60.306 43.478 0.00 0.00 42.37 3.36
2935 5861 3.570975 AGAGCAAGCAATGTCATGAACAA 59.429 39.130 0.00 0.00 42.37 2.83
2938 5864 3.822167 TGAAGAGCAAGCAATGTCATGAA 59.178 39.130 0.00 0.00 0.00 2.57
2939 5865 3.414269 TGAAGAGCAAGCAATGTCATGA 58.586 40.909 0.00 0.00 0.00 3.07
2940 5866 3.427638 CCTGAAGAGCAAGCAATGTCATG 60.428 47.826 0.00 0.00 0.00 3.07
2941 5867 2.753452 CCTGAAGAGCAAGCAATGTCAT 59.247 45.455 0.00 0.00 0.00 3.06
2942 5868 2.156917 CCTGAAGAGCAAGCAATGTCA 58.843 47.619 0.00 0.00 0.00 3.58
2943 5869 1.471684 CCCTGAAGAGCAAGCAATGTC 59.528 52.381 0.00 0.00 0.00 3.06
2944 5870 1.202976 ACCCTGAAGAGCAAGCAATGT 60.203 47.619 0.00 0.00 0.00 2.71
2945 5871 1.201647 CACCCTGAAGAGCAAGCAATG 59.798 52.381 0.00 0.00 0.00 2.82
2946 5872 1.074405 TCACCCTGAAGAGCAAGCAAT 59.926 47.619 0.00 0.00 0.00 3.56
2947 5873 0.473755 TCACCCTGAAGAGCAAGCAA 59.526 50.000 0.00 0.00 0.00 3.91
2948 5874 0.473755 TTCACCCTGAAGAGCAAGCA 59.526 50.000 0.00 0.00 31.83 3.91
2949 5875 3.329300 TTCACCCTGAAGAGCAAGC 57.671 52.632 0.00 0.00 31.83 4.01
2963 5889 1.673168 CTCAGCTATTGGGGCTTCAC 58.327 55.000 0.00 0.00 38.03 3.18
2964 5890 0.107017 GCTCAGCTATTGGGGCTTCA 60.107 55.000 0.00 0.00 38.03 3.02
2965 5891 0.107017 TGCTCAGCTATTGGGGCTTC 60.107 55.000 0.00 0.00 38.03 3.86
2966 5892 0.554792 ATGCTCAGCTATTGGGGCTT 59.445 50.000 0.00 0.00 38.03 4.35
2967 5893 0.110104 GATGCTCAGCTATTGGGGCT 59.890 55.000 0.00 0.00 41.07 5.19
2968 5894 0.179009 TGATGCTCAGCTATTGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
2969 5895 1.893544 CTGATGCTCAGCTATTGGGG 58.106 55.000 0.00 0.00 37.72 4.96
2978 5904 0.529337 ATCGAACCGCTGATGCTCAG 60.529 55.000 8.34 8.34 46.90 3.35
2979 5905 0.108186 AATCGAACCGCTGATGCTCA 60.108 50.000 0.00 0.00 36.97 4.26
2980 5906 0.302890 CAATCGAACCGCTGATGCTC 59.697 55.000 0.00 0.00 36.97 4.26
2981 5907 0.108186 TCAATCGAACCGCTGATGCT 60.108 50.000 0.00 0.00 36.97 3.79
2982 5908 0.302890 CTCAATCGAACCGCTGATGC 59.697 55.000 0.00 0.00 0.00 3.91
2984 5910 1.148157 CGCTCAATCGAACCGCTGAT 61.148 55.000 0.00 0.00 0.00 2.90
2985 5911 1.805539 CGCTCAATCGAACCGCTGA 60.806 57.895 0.00 0.00 0.00 4.26
2986 5912 1.148157 ATCGCTCAATCGAACCGCTG 61.148 55.000 0.00 0.00 42.15 5.18
2987 5913 1.141881 ATCGCTCAATCGAACCGCT 59.858 52.632 0.00 0.00 42.15 5.52
2989 5915 1.491670 ATCATCGCTCAATCGAACCG 58.508 50.000 0.00 0.00 42.15 4.44
2990 5916 2.410053 GCTATCATCGCTCAATCGAACC 59.590 50.000 0.00 0.00 42.15 3.62
2992 5918 2.610479 GGGCTATCATCGCTCAATCGAA 60.610 50.000 0.00 0.00 42.15 3.71
2995 5921 2.462456 TGGGCTATCATCGCTCAATC 57.538 50.000 0.00 0.00 34.37 2.67
2997 5923 1.879372 GCATGGGCTATCATCGCTCAA 60.879 52.381 0.00 0.00 41.89 3.02
2998 5924 0.321034 GCATGGGCTATCATCGCTCA 60.321 55.000 0.00 0.00 42.92 4.26
2999 5925 0.321034 TGCATGGGCTATCATCGCTC 60.321 55.000 0.00 0.00 41.91 5.03
3000 5926 0.327259 ATGCATGGGCTATCATCGCT 59.673 50.000 0.00 0.00 41.91 4.93
3002 5928 1.736126 GACATGCATGGGCTATCATCG 59.264 52.381 29.41 1.09 41.91 3.84
3003 5929 1.736126 CGACATGCATGGGCTATCATC 59.264 52.381 29.41 14.43 41.91 2.92
3004 5930 1.072806 ACGACATGCATGGGCTATCAT 59.927 47.619 29.41 6.76 41.91 2.45
3007 5933 2.057137 AAACGACATGCATGGGCTAT 57.943 45.000 29.41 9.11 41.91 2.97
3008 5934 1.742831 GAAAACGACATGCATGGGCTA 59.257 47.619 29.41 0.00 41.91 3.93
3009 5935 0.527565 GAAAACGACATGCATGGGCT 59.472 50.000 29.41 9.91 41.91 5.19
3010 5936 0.527565 AGAAAACGACATGCATGGGC 59.472 50.000 29.41 19.46 41.68 5.36
3012 5938 2.728846 CGGAAGAAAACGACATGCATGG 60.729 50.000 29.41 15.68 0.00 3.66
3013 5939 2.508867 CGGAAGAAAACGACATGCATG 58.491 47.619 25.09 25.09 0.00 4.06
3014 5940 1.468520 CCGGAAGAAAACGACATGCAT 59.531 47.619 0.00 0.00 0.00 3.96
3015 5941 0.871722 CCGGAAGAAAACGACATGCA 59.128 50.000 0.00 0.00 0.00 3.96
3018 5944 1.338769 CCTCCCGGAAGAAAACGACAT 60.339 52.381 0.73 0.00 0.00 3.06
3019 5945 0.034337 CCTCCCGGAAGAAAACGACA 59.966 55.000 0.73 0.00 0.00 4.35
3020 5946 1.296755 GCCTCCCGGAAGAAAACGAC 61.297 60.000 0.73 0.00 0.00 4.34
3021 5947 1.004200 GCCTCCCGGAAGAAAACGA 60.004 57.895 0.73 0.00 0.00 3.85
3022 5948 2.388232 CGCCTCCCGGAAGAAAACG 61.388 63.158 0.73 0.00 0.00 3.60
3023 5949 2.687805 GCGCCTCCCGGAAGAAAAC 61.688 63.158 0.73 0.00 37.44 2.43
3024 5950 1.546589 TAGCGCCTCCCGGAAGAAAA 61.547 55.000 0.73 0.00 37.44 2.29
3026 5952 1.335132 AATAGCGCCTCCCGGAAGAA 61.335 55.000 0.73 0.00 37.44 2.52
3027 5953 1.335132 AAATAGCGCCTCCCGGAAGA 61.335 55.000 0.73 0.00 37.44 2.87
3028 5954 0.391597 TAAATAGCGCCTCCCGGAAG 59.608 55.000 0.73 0.00 37.44 3.46
3029 5955 0.831966 TTAAATAGCGCCTCCCGGAA 59.168 50.000 0.73 0.00 37.44 4.30
3030 5956 0.391597 CTTAAATAGCGCCTCCCGGA 59.608 55.000 0.73 0.00 37.44 5.14
3031 5957 0.391597 TCTTAAATAGCGCCTCCCGG 59.608 55.000 2.29 0.00 37.44 5.73
3032 5958 2.135933 CTTCTTAAATAGCGCCTCCCG 58.864 52.381 2.29 0.00 40.75 5.14
3034 5960 3.560481 GGTTCTTCTTAAATAGCGCCTCC 59.440 47.826 2.29 0.00 0.00 4.30
3035 5961 4.443621 AGGTTCTTCTTAAATAGCGCCTC 58.556 43.478 2.29 0.00 0.00 4.70
3036 5962 4.489306 AGGTTCTTCTTAAATAGCGCCT 57.511 40.909 2.29 0.00 0.00 5.52
3037 5963 5.562506 AAAGGTTCTTCTTAAATAGCGCC 57.437 39.130 2.29 0.00 0.00 6.53
3038 5964 6.248629 CGAAAAAGGTTCTTCTTAAATAGCGC 59.751 38.462 0.00 0.00 0.00 5.92
3039 5965 7.295930 ACGAAAAAGGTTCTTCTTAAATAGCG 58.704 34.615 0.00 0.00 0.00 4.26
3040 5966 9.756461 CTACGAAAAAGGTTCTTCTTAAATAGC 57.244 33.333 0.00 0.00 0.00 2.97
3041 5967 9.756461 GCTACGAAAAAGGTTCTTCTTAAATAG 57.244 33.333 0.00 0.00 0.00 1.73
3042 5968 9.275398 TGCTACGAAAAAGGTTCTTCTTAAATA 57.725 29.630 0.00 0.00 0.00 1.40
3044 5970 7.281549 AGTGCTACGAAAAAGGTTCTTCTTAAA 59.718 33.333 0.00 0.00 0.00 1.52
3045 5971 6.764560 AGTGCTACGAAAAAGGTTCTTCTTAA 59.235 34.615 0.00 0.00 0.00 1.85
3046 5972 6.285990 AGTGCTACGAAAAAGGTTCTTCTTA 58.714 36.000 0.00 0.00 0.00 2.10
3048 5974 4.704965 AGTGCTACGAAAAAGGTTCTTCT 58.295 39.130 0.00 0.00 0.00 2.85
3051 5977 6.053650 ACTAAAGTGCTACGAAAAAGGTTCT 58.946 36.000 0.00 0.00 0.00 3.01
3053 5979 6.688637 AACTAAAGTGCTACGAAAAAGGTT 57.311 33.333 0.00 0.00 0.00 3.50
3054 5980 6.762661 TGTAACTAAAGTGCTACGAAAAAGGT 59.237 34.615 0.00 0.00 0.00 3.50
3055 5981 7.181143 TGTAACTAAAGTGCTACGAAAAAGG 57.819 36.000 0.00 0.00 0.00 3.11
3057 5983 8.145316 ACATGTAACTAAAGTGCTACGAAAAA 57.855 30.769 0.00 0.00 0.00 1.94
3060 5986 8.084073 ACTTACATGTAACTAAAGTGCTACGAA 58.916 33.333 14.35 0.00 0.00 3.85
3061 5987 7.596494 ACTTACATGTAACTAAAGTGCTACGA 58.404 34.615 14.35 0.00 0.00 3.43
3064 5990 7.596494 ACGACTTACATGTAACTAAAGTGCTA 58.404 34.615 14.35 0.00 30.83 3.49
3065 5991 6.453092 ACGACTTACATGTAACTAAAGTGCT 58.547 36.000 14.35 0.00 30.83 4.40
3080 6006 9.250624 CCCAAATTTGAATTTAAACGACTTACA 57.749 29.630 19.86 0.00 36.52 2.41
3081 6007 9.251792 ACCCAAATTTGAATTTAAACGACTTAC 57.748 29.630 19.86 0.00 36.52 2.34
3083 6009 9.819267 TTACCCAAATTTGAATTTAAACGACTT 57.181 25.926 19.86 0.00 36.52 3.01
3084 6010 9.471084 CTTACCCAAATTTGAATTTAAACGACT 57.529 29.630 19.86 0.00 36.52 4.18
3085 6011 9.251792 ACTTACCCAAATTTGAATTTAAACGAC 57.748 29.630 19.86 0.00 36.52 4.34
3096 6022 8.700051 TGAGAAAATTGACTTACCCAAATTTGA 58.300 29.630 19.86 0.00 29.72 2.69
3097 6023 8.764287 GTGAGAAAATTGACTTACCCAAATTTG 58.236 33.333 11.40 11.40 29.72 2.32
3098 6024 7.931407 GGTGAGAAAATTGACTTACCCAAATTT 59.069 33.333 12.14 0.00 36.99 1.82
3099 6025 7.441836 GGTGAGAAAATTGACTTACCCAAATT 58.558 34.615 12.14 0.00 36.99 1.82
3101 6027 5.009210 CGGTGAGAAAATTGACTTACCCAAA 59.991 40.000 15.38 0.00 38.85 3.28
3102 6028 4.517453 CGGTGAGAAAATTGACTTACCCAA 59.483 41.667 15.38 0.00 38.85 4.12
3103 6029 4.069304 CGGTGAGAAAATTGACTTACCCA 58.931 43.478 15.38 0.00 38.85 4.51
3104 6030 4.070009 ACGGTGAGAAAATTGACTTACCC 58.930 43.478 15.38 4.34 38.85 3.69
3105 6031 5.237779 TCAACGGTGAGAAAATTGACTTACC 59.762 40.000 0.00 12.79 38.74 2.85
3107 6033 7.444183 AGAATCAACGGTGAGAAAATTGACTTA 59.556 33.333 9.97 0.00 37.14 2.24
3108 6034 6.263168 AGAATCAACGGTGAGAAAATTGACTT 59.737 34.615 9.97 0.00 37.14 3.01
3109 6035 5.765182 AGAATCAACGGTGAGAAAATTGACT 59.235 36.000 9.97 0.00 37.14 3.41
3110 6036 6.002062 AGAATCAACGGTGAGAAAATTGAC 57.998 37.500 9.97 0.00 37.14 3.18
3111 6037 6.633500 AAGAATCAACGGTGAGAAAATTGA 57.367 33.333 9.97 0.00 37.14 2.57
3112 6038 7.222611 ACAAAAGAATCAACGGTGAGAAAATTG 59.777 33.333 9.97 13.46 37.14 2.32
3113 6039 7.264947 ACAAAAGAATCAACGGTGAGAAAATT 58.735 30.769 9.97 0.00 37.14 1.82
3114 6040 6.805713 ACAAAAGAATCAACGGTGAGAAAAT 58.194 32.000 9.97 0.00 37.14 1.82
3115 6041 6.127869 TGACAAAAGAATCAACGGTGAGAAAA 60.128 34.615 9.97 0.00 37.14 2.29
3117 6043 4.878971 TGACAAAAGAATCAACGGTGAGAA 59.121 37.500 9.97 0.00 37.14 2.87
3120 6046 4.878971 TCTTGACAAAAGAATCAACGGTGA 59.121 37.500 5.17 5.17 38.41 4.02
3122 6048 6.391227 AATCTTGACAAAAGAATCAACGGT 57.609 33.333 0.00 0.00 31.62 4.83
3123 6049 8.853345 CATAAATCTTGACAAAAGAATCAACGG 58.147 33.333 0.00 0.00 31.62 4.44
3124 6050 8.368126 GCATAAATCTTGACAAAAGAATCAACG 58.632 33.333 0.00 0.00 31.62 4.10
3125 6051 9.415544 AGCATAAATCTTGACAAAAGAATCAAC 57.584 29.630 0.00 0.00 31.62 3.18
3126 6052 9.985730 AAGCATAAATCTTGACAAAAGAATCAA 57.014 25.926 0.00 0.00 33.82 2.57
3127 6053 9.985730 AAAGCATAAATCTTGACAAAAGAATCA 57.014 25.926 0.00 0.00 0.00 2.57
3169 6095 9.567848 GTGACAAGTCAAAAATCAACTTAAGAA 57.432 29.630 10.09 0.00 41.85 2.52
3170 6096 8.956426 AGTGACAAGTCAAAAATCAACTTAAGA 58.044 29.630 10.09 0.00 41.85 2.10
3172 6098 8.956426 AGAGTGACAAGTCAAAAATCAACTTAA 58.044 29.630 4.20 0.00 41.85 1.85
3173 6099 8.506168 AGAGTGACAAGTCAAAAATCAACTTA 57.494 30.769 4.20 0.00 41.85 2.24
3174 6100 7.396540 AGAGTGACAAGTCAAAAATCAACTT 57.603 32.000 4.20 0.00 41.85 2.66
3175 6101 7.396540 AAGAGTGACAAGTCAAAAATCAACT 57.603 32.000 4.20 0.00 41.85 3.16
3176 6102 8.466086 AAAAGAGTGACAAGTCAAAAATCAAC 57.534 30.769 4.20 0.00 41.85 3.18
3178 6104 9.787532 CTTAAAAGAGTGACAAGTCAAAAATCA 57.212 29.630 4.20 0.00 41.85 2.57
3179 6105 9.237846 CCTTAAAAGAGTGACAAGTCAAAAATC 57.762 33.333 4.20 1.88 41.85 2.17
3180 6106 8.749354 ACCTTAAAAGAGTGACAAGTCAAAAAT 58.251 29.630 4.20 0.00 41.85 1.82
3181 6107 8.117813 ACCTTAAAAGAGTGACAAGTCAAAAA 57.882 30.769 4.20 0.00 41.85 1.94
3182 6108 7.696992 ACCTTAAAAGAGTGACAAGTCAAAA 57.303 32.000 4.20 0.00 41.85 2.44
3183 6109 8.795842 TTACCTTAAAAGAGTGACAAGTCAAA 57.204 30.769 4.20 0.00 41.85 2.69
3184 6110 8.795842 TTTACCTTAAAAGAGTGACAAGTCAA 57.204 30.769 4.20 0.00 41.85 3.18
3185 6111 8.974060 ATTTACCTTAAAAGAGTGACAAGTCA 57.026 30.769 0.00 0.00 37.24 3.41
3187 6113 7.929785 TCGATTTACCTTAAAAGAGTGACAAGT 59.070 33.333 0.00 0.00 0.00 3.16
3188 6114 8.306680 TCGATTTACCTTAAAAGAGTGACAAG 57.693 34.615 0.00 0.00 0.00 3.16
3189 6115 8.842358 ATCGATTTACCTTAAAAGAGTGACAA 57.158 30.769 0.00 0.00 0.00 3.18
3190 6116 8.842358 AATCGATTTACCTTAAAAGAGTGACA 57.158 30.769 4.39 0.00 0.00 3.58
3215 6141 6.777580 AGTCAAGAATTCAGCCTAAGGAAAAA 59.222 34.615 8.44 0.00 0.00 1.94
3216 6142 6.306987 AGTCAAGAATTCAGCCTAAGGAAAA 58.693 36.000 8.44 0.00 0.00 2.29
3217 6143 5.880901 AGTCAAGAATTCAGCCTAAGGAAA 58.119 37.500 8.44 0.00 0.00 3.13
3218 6144 5.505181 AGTCAAGAATTCAGCCTAAGGAA 57.495 39.130 8.44 0.00 0.00 3.36
3219 6145 5.248640 CAAGTCAAGAATTCAGCCTAAGGA 58.751 41.667 8.44 0.00 0.00 3.36
3220 6146 4.142513 GCAAGTCAAGAATTCAGCCTAAGG 60.143 45.833 8.44 0.00 0.00 2.69
3222 6148 3.758554 GGCAAGTCAAGAATTCAGCCTAA 59.241 43.478 8.44 0.00 37.89 2.69
3223 6149 3.347216 GGCAAGTCAAGAATTCAGCCTA 58.653 45.455 8.44 0.00 37.89 3.93
3225 6151 1.203287 GGGCAAGTCAAGAATTCAGCC 59.797 52.381 8.44 8.58 40.08 4.85
3228 6154 2.158475 ACAGGGGCAAGTCAAGAATTCA 60.158 45.455 8.44 0.00 0.00 2.57
3230 6156 2.683211 ACAGGGGCAAGTCAAGAATT 57.317 45.000 0.00 0.00 0.00 2.17
3231 6157 2.683211 AACAGGGGCAAGTCAAGAAT 57.317 45.000 0.00 0.00 0.00 2.40
3232 6158 2.452600 AAACAGGGGCAAGTCAAGAA 57.547 45.000 0.00 0.00 0.00 2.52
3233 6159 2.441750 ACTAAACAGGGGCAAGTCAAGA 59.558 45.455 0.00 0.00 0.00 3.02
3235 6161 2.092103 ACACTAAACAGGGGCAAGTCAA 60.092 45.455 0.00 0.00 0.00 3.18
3237 6163 2.271944 ACACTAAACAGGGGCAAGTC 57.728 50.000 0.00 0.00 0.00 3.01
3238 6164 3.137728 ACTTACACTAAACAGGGGCAAGT 59.862 43.478 0.00 0.00 0.00 3.16
3239 6165 3.751518 ACTTACACTAAACAGGGGCAAG 58.248 45.455 0.00 0.00 0.00 4.01
3240 6166 3.868619 ACTTACACTAAACAGGGGCAA 57.131 42.857 0.00 0.00 0.00 4.52
3242 6168 3.746940 TCAACTTACACTAAACAGGGGC 58.253 45.455 0.00 0.00 0.00 5.80
3286 6212 3.196685 CACAACAAGGGGGAAGTCAAAAA 59.803 43.478 0.00 0.00 0.00 1.94
3288 6214 2.383855 CACAACAAGGGGGAAGTCAAA 58.616 47.619 0.00 0.00 0.00 2.69
3289 6215 1.410932 CCACAACAAGGGGGAAGTCAA 60.411 52.381 0.00 0.00 37.04 3.18
3290 6216 0.184933 CCACAACAAGGGGGAAGTCA 59.815 55.000 0.00 0.00 37.04 3.41
3291 6217 3.036431 CCACAACAAGGGGGAAGTC 57.964 57.895 0.00 0.00 37.04 3.01
3298 6224 5.529581 AAATTGACTTACCACAACAAGGG 57.470 39.130 0.00 0.00 0.00 3.95
3299 6225 7.264947 AGAAAAATTGACTTACCACAACAAGG 58.735 34.615 0.00 0.00 0.00 3.61
3302 6228 9.743057 CAATAGAAAAATTGACTTACCACAACA 57.257 29.630 0.00 0.00 38.84 3.33
3303 6229 9.191995 CCAATAGAAAAATTGACTTACCACAAC 57.808 33.333 0.00 0.00 38.84 3.32
3304 6230 8.364142 CCCAATAGAAAAATTGACTTACCACAA 58.636 33.333 0.00 0.00 38.84 3.33
3305 6231 7.524698 GCCCAATAGAAAAATTGACTTACCACA 60.525 37.037 0.00 0.00 38.84 4.17
3306 6232 6.811665 GCCCAATAGAAAAATTGACTTACCAC 59.188 38.462 0.00 0.00 38.84 4.16
3307 6233 6.723977 AGCCCAATAGAAAAATTGACTTACCA 59.276 34.615 0.00 0.00 38.84 3.25
3308 6234 7.170393 AGCCCAATAGAAAAATTGACTTACC 57.830 36.000 0.00 0.00 38.84 2.85
3309 6235 8.303876 TCAAGCCCAATAGAAAAATTGACTTAC 58.696 33.333 0.00 0.00 38.84 2.34
3310 6236 8.415950 TCAAGCCCAATAGAAAAATTGACTTA 57.584 30.769 0.00 0.00 38.84 2.24
3311 6237 7.301868 TCAAGCCCAATAGAAAAATTGACTT 57.698 32.000 0.00 0.14 38.84 3.01
3312 6238 6.916360 TCAAGCCCAATAGAAAAATTGACT 57.084 33.333 0.00 0.00 38.84 3.41
3313 6239 6.091305 GCTTCAAGCCCAATAGAAAAATTGAC 59.909 38.462 0.00 0.00 35.75 3.18
3314 6240 6.165577 GCTTCAAGCCCAATAGAAAAATTGA 58.834 36.000 0.00 0.00 35.75 2.57
3330 6256 1.165270 ATGTGTAACGGGCTTCAAGC 58.835 50.000 0.00 0.00 42.39 4.01
3331 6257 3.596214 ACTATGTGTAACGGGCTTCAAG 58.404 45.455 0.00 0.00 42.39 3.02
3332 6258 3.688694 ACTATGTGTAACGGGCTTCAA 57.311 42.857 0.00 0.00 42.39 2.69
3333 6259 3.688694 AACTATGTGTAACGGGCTTCA 57.311 42.857 0.00 0.00 42.39 3.02
3334 6260 5.180680 AGAAAAACTATGTGTAACGGGCTTC 59.819 40.000 0.00 0.00 42.39 3.86
3335 6261 5.067954 AGAAAAACTATGTGTAACGGGCTT 58.932 37.500 0.00 0.00 42.39 4.35
3336 6262 4.648651 AGAAAAACTATGTGTAACGGGCT 58.351 39.130 0.00 0.00 42.39 5.19
3338 6264 6.731164 ACAAAGAAAAACTATGTGTAACGGG 58.269 36.000 0.00 0.00 42.39 5.28
3340 6266 8.837059 GCATACAAAGAAAAACTATGTGTAACG 58.163 33.333 0.00 0.00 42.39 3.18
3408 6334 9.814899 CAAATGCAAAAATATACCCATGTAGAA 57.185 29.630 0.00 0.00 0.00 2.10
3409 6335 8.420222 CCAAATGCAAAAATATACCCATGTAGA 58.580 33.333 0.00 0.00 0.00 2.59
3410 6336 8.420222 TCCAAATGCAAAAATATACCCATGTAG 58.580 33.333 0.00 0.00 0.00 2.74
3411 6337 8.311395 TCCAAATGCAAAAATATACCCATGTA 57.689 30.769 0.00 0.00 0.00 2.29
3412 6338 7.192852 TCCAAATGCAAAAATATACCCATGT 57.807 32.000 0.00 0.00 0.00 3.21
3413 6339 7.932491 TCATCCAAATGCAAAAATATACCCATG 59.068 33.333 0.00 0.00 32.58 3.66
3414 6340 8.032045 TCATCCAAATGCAAAAATATACCCAT 57.968 30.769 0.00 0.00 32.58 4.00
3415 6341 7.125507 ACTCATCCAAATGCAAAAATATACCCA 59.874 33.333 0.00 0.00 32.58 4.51
3417 6343 7.439056 CCACTCATCCAAATGCAAAAATATACC 59.561 37.037 0.00 0.00 32.58 2.73
3418 6344 8.196771 TCCACTCATCCAAATGCAAAAATATAC 58.803 33.333 0.00 0.00 32.58 1.47
3420 6346 7.043565 GTCCACTCATCCAAATGCAAAAATAT 58.956 34.615 0.00 0.00 32.58 1.28
3421 6347 6.014755 TGTCCACTCATCCAAATGCAAAAATA 60.015 34.615 0.00 0.00 32.58 1.40
3422 6348 5.221682 TGTCCACTCATCCAAATGCAAAAAT 60.222 36.000 0.00 0.00 32.58 1.82
3424 6350 3.640498 TGTCCACTCATCCAAATGCAAAA 59.360 39.130 0.00 0.00 32.58 2.44
3425 6351 3.005684 GTGTCCACTCATCCAAATGCAAA 59.994 43.478 0.00 0.00 32.58 3.68
3426 6352 2.557924 GTGTCCACTCATCCAAATGCAA 59.442 45.455 0.00 0.00 32.58 4.08
3427 6353 2.161855 GTGTCCACTCATCCAAATGCA 58.838 47.619 0.00 0.00 32.58 3.96
3428 6354 2.095059 GTGTGTCCACTCATCCAAATGC 60.095 50.000 0.00 0.00 38.61 3.56
3429 6355 3.148412 TGTGTGTCCACTCATCCAAATG 58.852 45.455 0.00 0.00 42.34 2.32
3430 6356 3.507162 TGTGTGTCCACTCATCCAAAT 57.493 42.857 0.00 0.00 42.34 2.32
3432 6358 3.507162 ATTGTGTGTCCACTCATCCAA 57.493 42.857 3.32 0.00 42.34 3.53
3433 6359 3.507162 AATTGTGTGTCCACTCATCCA 57.493 42.857 3.32 0.00 42.34 3.41
3434 6360 4.579869 AGTAATTGTGTGTCCACTCATCC 58.420 43.478 3.32 0.00 42.34 3.51
3435 6361 7.979537 TGTATAGTAATTGTGTGTCCACTCATC 59.020 37.037 3.32 0.00 42.34 2.92
3436 6362 7.847096 TGTATAGTAATTGTGTGTCCACTCAT 58.153 34.615 3.32 0.00 42.34 2.90
3437 6363 7.039293 ACTGTATAGTAATTGTGTGTCCACTCA 60.039 37.037 0.00 0.00 37.68 3.41
3439 6365 7.241042 ACTGTATAGTAATTGTGTGTCCACT 57.759 36.000 0.00 0.00 37.68 4.00
3440 6366 9.031360 CATACTGTATAGTAATTGTGTGTCCAC 57.969 37.037 3.24 0.00 42.37 4.02
3441 6367 8.755028 ACATACTGTATAGTAATTGTGTGTCCA 58.245 33.333 3.24 0.00 42.37 4.02
3442 6368 9.031360 CACATACTGTATAGTAATTGTGTGTCC 57.969 37.037 18.27 0.00 41.31 4.02
3479 6405 7.986085 AATAGTGCAATTTTGACACTCTAGT 57.014 32.000 17.54 5.06 41.31 2.57
3484 6410 8.906867 AGCATATAATAGTGCAATTTTGACACT 58.093 29.630 17.88 17.88 43.63 3.55
3485 6411 9.520204 AAGCATATAATAGTGCAATTTTGACAC 57.480 29.630 0.00 8.74 43.63 3.67
3495 6421 8.611757 CGCCAATAATAAGCATATAATAGTGCA 58.388 33.333 0.00 0.00 43.63 4.57
3496 6422 8.612619 ACGCCAATAATAAGCATATAATAGTGC 58.387 33.333 0.00 0.00 41.57 4.40
3518 6444 9.683651 GCTGAAATTAAACATTTTAAATACGCC 57.316 29.630 0.00 0.00 0.00 5.68
3525 6451 9.522804 ACTTCGTGCTGAAATTAAACATTTTAA 57.477 25.926 0.00 0.00 35.79 1.52
3526 6452 9.522804 AACTTCGTGCTGAAATTAAACATTTTA 57.477 25.926 0.00 0.00 35.79 1.52
3527 6453 8.327429 CAACTTCGTGCTGAAATTAAACATTTT 58.673 29.630 0.00 0.00 35.79 1.82
3528 6454 7.491048 ACAACTTCGTGCTGAAATTAAACATTT 59.509 29.630 0.00 0.00 35.79 2.32
3529 6455 6.978080 ACAACTTCGTGCTGAAATTAAACATT 59.022 30.769 0.00 0.00 35.79 2.71
3530 6456 6.503524 ACAACTTCGTGCTGAAATTAAACAT 58.496 32.000 0.00 0.00 35.79 2.71
3531 6457 5.885881 ACAACTTCGTGCTGAAATTAAACA 58.114 33.333 0.00 0.00 35.79 2.83
3532 6458 7.589954 ACATACAACTTCGTGCTGAAATTAAAC 59.410 33.333 0.00 0.00 35.79 2.01
3533 6459 7.644490 ACATACAACTTCGTGCTGAAATTAAA 58.356 30.769 0.00 0.00 35.79 1.52
3534 6460 7.197071 ACATACAACTTCGTGCTGAAATTAA 57.803 32.000 0.00 0.00 35.79 1.40
3535 6461 6.795098 ACATACAACTTCGTGCTGAAATTA 57.205 33.333 0.00 0.00 35.79 1.40
3536 6462 5.689383 ACATACAACTTCGTGCTGAAATT 57.311 34.783 0.00 0.00 35.79 1.82
3537 6463 6.426937 ACTTACATACAACTTCGTGCTGAAAT 59.573 34.615 0.00 0.00 35.79 2.17
3538 6464 5.756347 ACTTACATACAACTTCGTGCTGAAA 59.244 36.000 0.00 0.00 35.79 2.69
3539 6465 5.294356 ACTTACATACAACTTCGTGCTGAA 58.706 37.500 0.00 0.00 34.74 3.02
3540 6466 4.878439 ACTTACATACAACTTCGTGCTGA 58.122 39.130 0.00 0.00 0.00 4.26
3541 6467 5.591643 AACTTACATACAACTTCGTGCTG 57.408 39.130 0.00 0.00 0.00 4.41
3542 6468 6.613755 AAAACTTACATACAACTTCGTGCT 57.386 33.333 0.00 0.00 0.00 4.40
3570 6496 9.679661 ACCCTTTAAGAACAAACAAAATGAAAT 57.320 25.926 0.00 0.00 0.00 2.17
3577 6503 9.198475 TGGTATTACCCTTTAAGAACAAACAAA 57.802 29.630 10.37 0.00 37.50 2.83
3578 6504 8.763984 TGGTATTACCCTTTAAGAACAAACAA 57.236 30.769 10.37 0.00 37.50 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.