Multiple sequence alignment - TraesCS7A01G522800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G522800 chr7A 100.000 3652 0 0 1 3652 705677247 705680898 0.000000e+00 6745.0
1 TraesCS7A01G522800 chr7A 93.503 431 16 5 865 1284 705595071 705595500 6.660000e-177 630.0
2 TraesCS7A01G522800 chr7A 93.548 341 17 1 25 365 705632988 705632653 1.510000e-138 503.0
3 TraesCS7A01G522800 chr7A 90.691 333 27 2 30 358 393038957 393039289 1.200000e-119 440.0
4 TraesCS7A01G522800 chr7A 83.271 269 42 2 2677 2944 449994854 449995120 1.010000e-60 244.0
5 TraesCS7A01G522800 chr7D 92.517 2646 142 28 725 3353 613799080 613801686 0.000000e+00 3738.0
6 TraesCS7A01G522800 chr7D 90.064 1731 137 15 937 2654 613828190 613826482 0.000000e+00 2211.0
7 TraesCS7A01G522800 chr7D 89.137 313 23 7 3349 3652 613801942 613802252 2.660000e-101 379.0
8 TraesCS7A01G522800 chr7D 82.900 269 43 2 2677 2944 629870746 629870480 4.710000e-59 239.0
9 TraesCS7A01G522800 chr7D 77.531 405 76 10 3056 3455 93698979 93698585 2.840000e-56 230.0
10 TraesCS7A01G522800 chr7D 79.615 260 38 7 438 685 613798815 613799071 4.850000e-39 172.0
11 TraesCS7A01G522800 chr7B 91.474 2463 141 31 865 3291 705109903 705112332 0.000000e+00 3321.0
12 TraesCS7A01G522800 chr7B 90.872 1709 126 13 954 2654 705128018 705126332 0.000000e+00 2265.0
13 TraesCS7A01G522800 chr7B 84.553 246 32 5 2677 2920 720936293 720936534 4.710000e-59 239.0
14 TraesCS7A01G522800 chr7B 93.671 158 5 4 3288 3445 705112398 705112550 7.890000e-57 231.0
15 TraesCS7A01G522800 chr7B 82.463 268 44 2 2677 2943 737371520 737371255 7.890000e-57 231.0
16 TraesCS7A01G522800 chr7B 89.189 111 12 0 438 548 705109683 705109793 4.920000e-29 139.0
17 TraesCS7A01G522800 chr5B 86.660 937 110 9 972 1905 586534218 586535142 0.000000e+00 1024.0
18 TraesCS7A01G522800 chr5B 86.813 637 72 6 1995 2631 586535344 586535968 0.000000e+00 701.0
19 TraesCS7A01G522800 chr5B 87.059 255 28 3 3403 3652 690870543 690870797 2.150000e-72 283.0
20 TraesCS7A01G522800 chr5B 82.900 269 43 2 2677 2944 425731433 425731167 4.710000e-59 239.0
21 TraesCS7A01G522800 chr5D 86.425 744 85 10 1012 1743 478689739 478689000 0.000000e+00 800.0
22 TraesCS7A01G522800 chr5D 84.954 658 81 10 1994 2642 478598797 478599445 0.000000e+00 651.0
23 TraesCS7A01G522800 chr5D 87.175 538 69 0 1995 2532 478688986 478688449 2.410000e-171 612.0
24 TraesCS7A01G522800 chr1A 83.907 814 112 15 1100 1902 560881509 560880704 0.000000e+00 760.0
25 TraesCS7A01G522800 chr3A 83.519 807 106 14 1109 1909 52963186 52963971 0.000000e+00 728.0
26 TraesCS7A01G522800 chr3A 80.269 669 111 5 1984 2652 52981936 52982583 5.480000e-133 484.0
27 TraesCS7A01G522800 chr3A 92.537 335 20 1 31 360 143479705 143480039 3.300000e-130 475.0
28 TraesCS7A01G522800 chr3A 82.724 301 37 7 3350 3644 8292337 8292628 1.680000e-63 254.0
29 TraesCS7A01G522800 chr3A 83.146 267 42 2 2676 2941 12408997 12408733 1.310000e-59 241.0
30 TraesCS7A01G522800 chr3A 78.776 245 43 8 3413 3652 667315714 667315954 4.880000e-34 156.0
31 TraesCS7A01G522800 chr1D 83.026 813 121 12 1100 1902 467863292 467862487 0.000000e+00 721.0
32 TraesCS7A01G522800 chr1D 85.430 604 65 16 3057 3652 484023698 484024286 1.120000e-169 606.0
33 TraesCS7A01G522800 chr1D 76.630 184 38 5 589 769 467809408 467809589 3.000000e-16 97.1
34 TraesCS7A01G522800 chr2A 84.416 539 62 15 3057 3584 3506979 3506452 9.050000e-141 510.0
35 TraesCS7A01G522800 chr2A 86.269 335 36 5 3321 3651 755110655 755110983 4.490000e-94 355.0
36 TraesCS7A01G522800 chr2A 77.778 585 90 31 3061 3629 736757709 736757149 1.260000e-84 324.0
37 TraesCS7A01G522800 chr4A 93.675 332 20 1 27 358 474967068 474966738 2.530000e-136 496.0
38 TraesCS7A01G522800 chr4A 92.560 336 20 1 31 361 88712608 88712273 9.170000e-131 477.0
39 TraesCS7A01G522800 chr4A 83.209 268 42 2 2677 2943 121496011 121496276 3.640000e-60 243.0
40 TraesCS7A01G522800 chr5A 93.902 328 19 1 31 357 510287412 510287085 9.110000e-136 494.0
41 TraesCS7A01G522800 chr5A 91.793 329 23 1 31 359 447364770 447364446 4.300000e-124 455.0
42 TraesCS7A01G522800 chr6A 92.926 311 21 1 49 358 397484272 397484582 5.560000e-123 451.0
43 TraesCS7A01G522800 chr6A 91.239 331 26 2 31 358 581811294 581810964 7.190000e-122 448.0
44 TraesCS7A01G522800 chr3D 79.331 658 118 3 1995 2652 41055124 41055763 2.590000e-121 446.0
45 TraesCS7A01G522800 chr3D 80.000 215 36 7 3417 3630 532154879 532155087 6.320000e-33 152.0
46 TraesCS7A01G522800 chr2B 83.271 269 41 2 2677 2943 438614515 438614781 1.010000e-60 244.0
47 TraesCS7A01G522800 chr3B 77.178 241 41 12 3417 3652 704310749 704310980 1.060000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G522800 chr7A 705677247 705680898 3651 False 6745.000000 6745 100.000000 1 3652 1 chr7A.!!$F4 3651
1 TraesCS7A01G522800 chr7D 613826482 613828190 1708 True 2211.000000 2211 90.064000 937 2654 1 chr7D.!!$R2 1717
2 TraesCS7A01G522800 chr7D 613798815 613802252 3437 False 1429.666667 3738 87.089667 438 3652 3 chr7D.!!$F1 3214
3 TraesCS7A01G522800 chr7B 705126332 705128018 1686 True 2265.000000 2265 90.872000 954 2654 1 chr7B.!!$R1 1700
4 TraesCS7A01G522800 chr7B 705109683 705112550 2867 False 1230.333333 3321 91.444667 438 3445 3 chr7B.!!$F2 3007
5 TraesCS7A01G522800 chr5B 586534218 586535968 1750 False 862.500000 1024 86.736500 972 2631 2 chr5B.!!$F2 1659
6 TraesCS7A01G522800 chr5D 478688449 478689739 1290 True 706.000000 800 86.800000 1012 2532 2 chr5D.!!$R1 1520
7 TraesCS7A01G522800 chr5D 478598797 478599445 648 False 651.000000 651 84.954000 1994 2642 1 chr5D.!!$F1 648
8 TraesCS7A01G522800 chr1A 560880704 560881509 805 True 760.000000 760 83.907000 1100 1902 1 chr1A.!!$R1 802
9 TraesCS7A01G522800 chr3A 52963186 52963971 785 False 728.000000 728 83.519000 1109 1909 1 chr3A.!!$F2 800
10 TraesCS7A01G522800 chr3A 52981936 52982583 647 False 484.000000 484 80.269000 1984 2652 1 chr3A.!!$F3 668
11 TraesCS7A01G522800 chr1D 467862487 467863292 805 True 721.000000 721 83.026000 1100 1902 1 chr1D.!!$R1 802
12 TraesCS7A01G522800 chr1D 484023698 484024286 588 False 606.000000 606 85.430000 3057 3652 1 chr1D.!!$F2 595
13 TraesCS7A01G522800 chr2A 3506452 3506979 527 True 510.000000 510 84.416000 3057 3584 1 chr2A.!!$R1 527
14 TraesCS7A01G522800 chr2A 736757149 736757709 560 True 324.000000 324 77.778000 3061 3629 1 chr2A.!!$R2 568
15 TraesCS7A01G522800 chr3D 41055124 41055763 639 False 446.000000 446 79.331000 1995 2652 1 chr3D.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.039180 AGTTTTCTAAAGGGGCCCGG 59.961 55.000 18.95 9.21 0.0 5.73 F
356 357 0.106719 CCCGATGTTTGGCCAGGTAT 60.107 55.000 5.11 0.87 0.0 2.73 F
861 916 0.109365 TCGAAACAAATGCATGGCCG 60.109 50.000 0.00 1.57 0.0 6.13 F
1968 2141 1.125566 GCGCACTACACTAACCGTTTC 59.874 52.381 0.30 0.00 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2041 0.757512 ATGACATGGCAGAGCGAGAT 59.242 50.000 7.63 0.00 0.00 2.75 R
1940 2057 1.805539 GTGTAGTGCGCGCTGATGA 60.806 57.895 32.64 10.68 0.00 2.92 R
1972 2145 4.258510 GCGTATATTATATATGCGCGCGAG 60.259 45.833 37.18 8.39 45.57 5.03 R
3224 3494 0.250467 AGCTGTCCCACATGTCACAC 60.250 55.000 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.787001 GCGCAAGGGCCTCCTACT 61.787 66.667 6.46 0.00 44.07 2.57
24 25 2.501610 CGCAAGGGCCTCCTACTC 59.498 66.667 6.46 0.00 44.07 2.59
25 26 2.911928 GCAAGGGCCTCCTACTCC 59.088 66.667 6.46 0.00 44.07 3.85
26 27 1.690985 GCAAGGGCCTCCTACTCCT 60.691 63.158 6.46 0.00 44.07 3.69
27 28 0.398664 GCAAGGGCCTCCTACTCCTA 60.399 60.000 6.46 0.00 44.07 2.94
28 29 1.710816 CAAGGGCCTCCTACTCCTAG 58.289 60.000 6.46 0.00 44.07 3.02
29 30 1.062810 CAAGGGCCTCCTACTCCTAGT 60.063 57.143 6.46 0.00 44.07 2.57
30 31 1.320962 AGGGCCTCCTACTCCTAGTT 58.679 55.000 0.00 0.00 42.75 2.24
31 32 2.511420 AGGGCCTCCTACTCCTAGTTA 58.489 52.381 0.00 0.00 42.75 2.24
32 33 2.447811 AGGGCCTCCTACTCCTAGTTAG 59.552 54.545 0.00 0.00 42.75 2.34
33 34 2.446285 GGGCCTCCTACTCCTAGTTAGA 59.554 54.545 0.84 0.00 0.00 2.10
34 35 3.489355 GGCCTCCTACTCCTAGTTAGAC 58.511 54.545 0.00 0.00 0.00 2.59
35 36 3.489355 GCCTCCTACTCCTAGTTAGACC 58.511 54.545 0.00 0.00 0.00 3.85
36 37 3.138839 GCCTCCTACTCCTAGTTAGACCT 59.861 52.174 0.00 0.00 0.00 3.85
37 38 4.721132 CCTCCTACTCCTAGTTAGACCTG 58.279 52.174 0.00 0.00 0.00 4.00
38 39 4.446600 CCTCCTACTCCTAGTTAGACCTGG 60.447 54.167 0.00 0.00 0.00 4.45
39 40 3.117587 TCCTACTCCTAGTTAGACCTGGC 60.118 52.174 0.00 0.00 0.00 4.85
40 41 2.162264 ACTCCTAGTTAGACCTGGCC 57.838 55.000 0.00 0.00 0.00 5.36
41 42 1.361543 ACTCCTAGTTAGACCTGGCCA 59.638 52.381 4.71 4.71 0.00 5.36
42 43 2.022918 ACTCCTAGTTAGACCTGGCCAT 60.023 50.000 5.51 0.00 0.00 4.40
43 44 2.366916 CTCCTAGTTAGACCTGGCCATG 59.633 54.545 5.51 6.06 0.00 3.66
44 45 1.417890 CCTAGTTAGACCTGGCCATGG 59.582 57.143 5.51 13.05 0.00 3.66
45 46 1.417890 CTAGTTAGACCTGGCCATGGG 59.582 57.143 20.97 16.10 0.00 4.00
78 79 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
79 80 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
80 81 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
81 82 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
100 101 4.222847 CCCGGCCCGAAGCTACTC 62.223 72.222 3.71 0.00 43.05 2.59
101 102 4.222847 CCGGCCCGAAGCTACTCC 62.223 72.222 3.71 0.00 43.05 3.85
102 103 4.222847 CGGCCCGAAGCTACTCCC 62.223 72.222 0.00 0.00 43.05 4.30
103 104 4.222847 GGCCCGAAGCTACTCCCG 62.223 72.222 0.00 0.00 43.05 5.14
104 105 4.222847 GCCCGAAGCTACTCCCGG 62.223 72.222 0.00 0.00 41.47 5.73
106 107 4.222847 CCGAAGCTACTCCCGGGC 62.223 72.222 18.49 2.86 38.42 6.13
107 108 4.222847 CGAAGCTACTCCCGGGCC 62.223 72.222 18.49 0.00 0.00 5.80
108 109 4.222847 GAAGCTACTCCCGGGCCG 62.223 72.222 21.46 21.46 0.00 6.13
128 129 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
129 130 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
130 131 1.587547 CTCGGGCCTAGATTTTGAGC 58.412 55.000 0.84 0.00 0.00 4.26
131 132 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
132 133 0.181350 CGGGCCTAGATTTTGAGCCT 59.819 55.000 0.84 0.00 43.36 4.58
133 134 1.685148 GGGCCTAGATTTTGAGCCTG 58.315 55.000 0.84 0.00 43.36 4.85
134 135 1.685148 GGCCTAGATTTTGAGCCTGG 58.315 55.000 0.00 0.00 40.57 4.45
135 136 1.064389 GGCCTAGATTTTGAGCCTGGT 60.064 52.381 0.00 0.00 40.57 4.00
136 137 2.621668 GGCCTAGATTTTGAGCCTGGTT 60.622 50.000 0.00 0.00 40.57 3.67
137 138 2.424956 GCCTAGATTTTGAGCCTGGTTG 59.575 50.000 0.00 0.00 0.00 3.77
138 139 2.424956 CCTAGATTTTGAGCCTGGTTGC 59.575 50.000 0.00 0.00 0.00 4.17
139 140 1.260544 AGATTTTGAGCCTGGTTGCC 58.739 50.000 0.00 0.00 0.00 4.52
140 141 1.203100 AGATTTTGAGCCTGGTTGCCT 60.203 47.619 0.00 0.00 0.00 4.75
141 142 0.971386 ATTTTGAGCCTGGTTGCCTG 59.029 50.000 0.00 0.00 0.00 4.85
142 143 1.114722 TTTTGAGCCTGGTTGCCTGG 61.115 55.000 6.71 6.71 44.16 4.45
167 168 4.115199 GAGCCTGGGCCCGACATT 62.115 66.667 19.37 0.45 43.17 2.71
168 169 3.645268 GAGCCTGGGCCCGACATTT 62.645 63.158 19.37 0.00 43.17 2.32
169 170 2.679996 GCCTGGGCCCGACATTTT 60.680 61.111 19.37 0.00 34.56 1.82
170 171 2.282783 GCCTGGGCCCGACATTTTT 61.283 57.895 19.37 0.00 34.56 1.94
171 172 0.968393 GCCTGGGCCCGACATTTTTA 60.968 55.000 19.37 0.00 34.56 1.52
172 173 0.815095 CCTGGGCCCGACATTTTTAC 59.185 55.000 19.37 0.00 0.00 2.01
173 174 1.540267 CTGGGCCCGACATTTTTACA 58.460 50.000 19.37 0.00 0.00 2.41
174 175 1.472480 CTGGGCCCGACATTTTTACAG 59.528 52.381 19.37 0.00 0.00 2.74
175 176 1.202952 TGGGCCCGACATTTTTACAGT 60.203 47.619 19.37 0.00 0.00 3.55
176 177 1.890489 GGGCCCGACATTTTTACAGTT 59.110 47.619 5.69 0.00 0.00 3.16
177 178 2.297880 GGGCCCGACATTTTTACAGTTT 59.702 45.455 5.69 0.00 0.00 2.66
178 179 3.243941 GGGCCCGACATTTTTACAGTTTT 60.244 43.478 5.69 0.00 0.00 2.43
179 180 3.985279 GGCCCGACATTTTTACAGTTTTC 59.015 43.478 0.00 0.00 0.00 2.29
180 181 4.261867 GGCCCGACATTTTTACAGTTTTCT 60.262 41.667 0.00 0.00 0.00 2.52
181 182 5.048573 GGCCCGACATTTTTACAGTTTTCTA 60.049 40.000 0.00 0.00 0.00 2.10
182 183 6.440436 GCCCGACATTTTTACAGTTTTCTAA 58.560 36.000 0.00 0.00 0.00 2.10
183 184 6.919115 GCCCGACATTTTTACAGTTTTCTAAA 59.081 34.615 0.00 0.00 0.00 1.85
184 185 7.114388 GCCCGACATTTTTACAGTTTTCTAAAG 59.886 37.037 0.00 0.00 0.00 1.85
185 186 7.593644 CCCGACATTTTTACAGTTTTCTAAAGG 59.406 37.037 0.00 0.00 0.00 3.11
186 187 7.593644 CCGACATTTTTACAGTTTTCTAAAGGG 59.406 37.037 0.00 0.00 0.00 3.95
187 188 7.593644 CGACATTTTTACAGTTTTCTAAAGGGG 59.406 37.037 0.00 0.00 0.00 4.79
188 189 7.214381 ACATTTTTACAGTTTTCTAAAGGGGC 58.786 34.615 0.00 0.00 0.00 5.80
189 190 5.794726 TTTTACAGTTTTCTAAAGGGGCC 57.205 39.130 0.00 0.00 0.00 5.80
190 191 2.304221 ACAGTTTTCTAAAGGGGCCC 57.696 50.000 17.12 17.12 0.00 5.80
191 192 1.173913 CAGTTTTCTAAAGGGGCCCG 58.826 55.000 18.95 2.19 0.00 6.13
192 193 0.039180 AGTTTTCTAAAGGGGCCCGG 59.961 55.000 18.95 9.21 0.00 5.73
193 194 1.304630 TTTTCTAAAGGGGCCCGGC 60.305 57.895 18.95 1.91 0.00 6.13
232 233 3.860717 GCTTTTGCATGTTCGGGC 58.139 55.556 0.00 0.00 46.58 6.13
233 234 1.737735 GCTTTTGCATGTTCGGGCC 60.738 57.895 0.00 0.00 46.58 5.80
234 235 1.444212 CTTTTGCATGTTCGGGCCG 60.444 57.895 22.51 22.51 0.00 6.13
235 236 1.861542 CTTTTGCATGTTCGGGCCGA 61.862 55.000 27.46 27.46 0.00 5.54
236 237 1.861542 TTTTGCATGTTCGGGCCGAG 61.862 55.000 29.30 18.36 37.14 4.63
239 240 2.436646 CATGTTCGGGCCGAGCTT 60.437 61.111 36.45 29.59 37.92 3.74
240 241 2.436646 ATGTTCGGGCCGAGCTTG 60.437 61.111 36.45 5.91 37.92 4.01
241 242 3.976701 ATGTTCGGGCCGAGCTTGG 62.977 63.158 36.45 16.53 37.92 3.61
249 250 2.600173 CCGAGCTTGGGCCCAAAA 60.600 61.111 36.16 17.69 39.73 2.44
250 251 2.206536 CCGAGCTTGGGCCCAAAAA 61.207 57.895 36.16 16.88 39.73 1.94
251 252 1.006220 CGAGCTTGGGCCCAAAAAC 60.006 57.895 36.16 27.04 39.73 2.43
252 253 1.463553 CGAGCTTGGGCCCAAAAACT 61.464 55.000 36.16 30.79 39.73 2.66
253 254 1.627864 GAGCTTGGGCCCAAAAACTA 58.372 50.000 36.16 15.25 39.73 2.24
254 255 1.546029 GAGCTTGGGCCCAAAAACTAG 59.454 52.381 36.16 24.77 39.73 2.57
255 256 0.608130 GCTTGGGCCCAAAAACTAGG 59.392 55.000 36.16 23.64 35.33 3.02
256 257 0.608130 CTTGGGCCCAAAAACTAGGC 59.392 55.000 36.16 0.00 46.37 3.93
259 260 3.284336 GCCCAAAAACTAGGCCCG 58.716 61.111 0.00 0.00 41.00 6.13
260 261 1.303806 GCCCAAAAACTAGGCCCGA 60.304 57.895 0.00 0.00 41.00 5.14
261 262 0.683179 GCCCAAAAACTAGGCCCGAT 60.683 55.000 0.00 0.00 41.00 4.18
262 263 1.102978 CCCAAAAACTAGGCCCGATG 58.897 55.000 0.00 0.00 0.00 3.84
263 264 1.102978 CCAAAAACTAGGCCCGATGG 58.897 55.000 0.00 0.00 0.00 3.51
295 296 2.600470 GCTCGGGCCCAGGTTTTT 60.600 61.111 24.92 0.00 0.00 1.94
310 311 1.971418 TTTTTGGCTCGGGATTGGC 59.029 52.632 0.00 0.00 0.00 4.52
311 312 0.541764 TTTTTGGCTCGGGATTGGCT 60.542 50.000 0.00 0.00 0.00 4.75
312 313 0.329931 TTTTGGCTCGGGATTGGCTA 59.670 50.000 0.00 0.00 0.00 3.93
313 314 0.107214 TTTGGCTCGGGATTGGCTAG 60.107 55.000 0.00 0.00 0.00 3.42
314 315 1.983119 TTGGCTCGGGATTGGCTAGG 61.983 60.000 0.00 0.00 0.00 3.02
315 316 2.281139 GCTCGGGATTGGCTAGGC 60.281 66.667 9.85 9.85 0.00 3.93
353 354 3.451894 GCCCGATGTTTGGCCAGG 61.452 66.667 5.11 2.45 41.97 4.45
354 355 2.035626 CCCGATGTTTGGCCAGGT 59.964 61.111 5.11 0.00 0.00 4.00
355 356 1.301623 CCCGATGTTTGGCCAGGTA 59.698 57.895 5.11 0.00 0.00 3.08
356 357 0.106719 CCCGATGTTTGGCCAGGTAT 60.107 55.000 5.11 0.87 0.00 2.73
357 358 1.142060 CCCGATGTTTGGCCAGGTATA 59.858 52.381 5.11 0.00 0.00 1.47
358 359 2.218603 CCGATGTTTGGCCAGGTATAC 58.781 52.381 5.11 1.28 0.00 1.47
359 360 2.158813 CCGATGTTTGGCCAGGTATACT 60.159 50.000 5.11 0.00 0.00 2.12
360 361 3.131396 CGATGTTTGGCCAGGTATACTC 58.869 50.000 5.11 0.00 0.00 2.59
361 362 3.477530 GATGTTTGGCCAGGTATACTCC 58.522 50.000 5.11 0.60 0.00 3.85
362 363 2.557869 TGTTTGGCCAGGTATACTCCT 58.442 47.619 5.11 0.00 38.51 3.69
363 364 3.726790 TGTTTGGCCAGGTATACTCCTA 58.273 45.455 5.11 0.00 35.87 2.94
364 365 3.709653 TGTTTGGCCAGGTATACTCCTAG 59.290 47.826 5.11 0.00 35.87 3.02
365 366 3.700863 TTGGCCAGGTATACTCCTAGT 57.299 47.619 5.11 0.00 35.87 2.57
366 367 3.240310 TGGCCAGGTATACTCCTAGTC 57.760 52.381 0.00 0.00 35.87 2.59
367 368 2.789992 TGGCCAGGTATACTCCTAGTCT 59.210 50.000 0.00 0.00 35.87 3.24
368 369 3.206866 TGGCCAGGTATACTCCTAGTCTT 59.793 47.826 0.00 0.00 35.87 3.01
369 370 3.827876 GGCCAGGTATACTCCTAGTCTTC 59.172 52.174 0.00 0.00 35.87 2.87
370 371 3.502979 GCCAGGTATACTCCTAGTCTTCG 59.497 52.174 2.25 0.00 35.87 3.79
371 372 4.073549 CCAGGTATACTCCTAGTCTTCGG 58.926 52.174 2.25 0.00 35.87 4.30
372 373 4.202440 CCAGGTATACTCCTAGTCTTCGGA 60.202 50.000 2.25 0.00 35.87 4.55
373 374 5.515184 CCAGGTATACTCCTAGTCTTCGGAT 60.515 48.000 2.25 0.00 35.87 4.18
374 375 5.413213 CAGGTATACTCCTAGTCTTCGGATG 59.587 48.000 2.25 0.00 35.87 3.51
375 376 5.310068 AGGTATACTCCTAGTCTTCGGATGA 59.690 44.000 2.25 0.00 35.87 2.92
376 377 6.012333 AGGTATACTCCTAGTCTTCGGATGAT 60.012 42.308 2.25 0.00 35.87 2.45
377 378 7.182387 AGGTATACTCCTAGTCTTCGGATGATA 59.818 40.741 2.25 0.00 35.87 2.15
378 379 7.496591 GGTATACTCCTAGTCTTCGGATGATAG 59.503 44.444 2.25 1.70 0.00 2.08
379 380 4.076394 ACTCCTAGTCTTCGGATGATAGC 58.924 47.826 0.00 0.00 0.00 2.97
380 381 4.075682 CTCCTAGTCTTCGGATGATAGCA 58.924 47.826 0.00 0.00 0.00 3.49
381 382 3.821600 TCCTAGTCTTCGGATGATAGCAC 59.178 47.826 0.00 0.00 0.00 4.40
382 383 3.570125 CCTAGTCTTCGGATGATAGCACA 59.430 47.826 0.00 0.00 0.00 4.57
383 384 4.038042 CCTAGTCTTCGGATGATAGCACAA 59.962 45.833 0.00 0.00 0.00 3.33
384 385 4.052159 AGTCTTCGGATGATAGCACAAG 57.948 45.455 0.00 0.00 0.00 3.16
385 386 3.701542 AGTCTTCGGATGATAGCACAAGA 59.298 43.478 0.00 0.00 0.00 3.02
386 387 4.047822 GTCTTCGGATGATAGCACAAGAG 58.952 47.826 0.00 0.00 0.00 2.85
387 388 3.954258 TCTTCGGATGATAGCACAAGAGA 59.046 43.478 0.00 0.00 0.00 3.10
388 389 3.998099 TCGGATGATAGCACAAGAGAG 57.002 47.619 0.00 0.00 0.00 3.20
389 390 2.035193 TCGGATGATAGCACAAGAGAGC 59.965 50.000 0.00 0.00 0.00 4.09
390 391 2.223900 CGGATGATAGCACAAGAGAGCA 60.224 50.000 0.00 0.00 33.43 4.26
391 392 3.391965 GGATGATAGCACAAGAGAGCAG 58.608 50.000 0.00 0.00 33.43 4.24
392 393 2.306341 TGATAGCACAAGAGAGCAGC 57.694 50.000 0.00 0.00 33.43 5.25
393 394 1.829849 TGATAGCACAAGAGAGCAGCT 59.170 47.619 0.00 0.00 39.22 4.24
394 395 3.026694 TGATAGCACAAGAGAGCAGCTA 58.973 45.455 0.00 0.00 41.46 3.32
395 396 3.067883 TGATAGCACAAGAGAGCAGCTAG 59.932 47.826 0.00 0.00 40.66 3.42
396 397 0.536260 AGCACAAGAGAGCAGCTAGG 59.464 55.000 0.00 0.00 33.06 3.02
397 398 0.461693 GCACAAGAGAGCAGCTAGGG 60.462 60.000 0.00 0.00 0.00 3.53
398 399 0.461693 CACAAGAGAGCAGCTAGGGC 60.462 60.000 0.00 0.00 39.06 5.19
399 400 1.227205 CAAGAGAGCAGCTAGGGCG 60.227 63.158 0.00 0.00 44.37 6.13
400 401 3.087666 AAGAGAGCAGCTAGGGCGC 62.088 63.158 0.00 0.00 44.37 6.53
401 402 4.940593 GAGAGCAGCTAGGGCGCG 62.941 72.222 0.00 0.00 44.37 6.86
416 417 3.583086 GCGCCCCTTATCCGCAAC 61.583 66.667 0.00 0.00 46.32 4.17
417 418 2.124901 CGCCCCTTATCCGCAACA 60.125 61.111 0.00 0.00 0.00 3.33
418 419 2.180204 CGCCCCTTATCCGCAACAG 61.180 63.158 0.00 0.00 0.00 3.16
419 420 1.077716 GCCCCTTATCCGCAACAGT 60.078 57.895 0.00 0.00 0.00 3.55
420 421 0.679960 GCCCCTTATCCGCAACAGTT 60.680 55.000 0.00 0.00 0.00 3.16
421 422 1.379527 CCCCTTATCCGCAACAGTTC 58.620 55.000 0.00 0.00 0.00 3.01
422 423 1.379527 CCCTTATCCGCAACAGTTCC 58.620 55.000 0.00 0.00 0.00 3.62
423 424 1.379527 CCTTATCCGCAACAGTTCCC 58.620 55.000 0.00 0.00 0.00 3.97
424 425 1.065418 CCTTATCCGCAACAGTTCCCT 60.065 52.381 0.00 0.00 0.00 4.20
425 426 2.618045 CCTTATCCGCAACAGTTCCCTT 60.618 50.000 0.00 0.00 0.00 3.95
426 427 2.871096 TATCCGCAACAGTTCCCTTT 57.129 45.000 0.00 0.00 0.00 3.11
427 428 1.247567 ATCCGCAACAGTTCCCTTTG 58.752 50.000 0.00 0.00 0.00 2.77
428 429 0.821711 TCCGCAACAGTTCCCTTTGG 60.822 55.000 0.00 0.00 0.00 3.28
429 430 0.821711 CCGCAACAGTTCCCTTTGGA 60.822 55.000 0.00 0.00 39.54 3.53
430 431 0.310854 CGCAACAGTTCCCTTTGGAC 59.689 55.000 0.00 0.00 41.57 4.02
431 432 1.692411 GCAACAGTTCCCTTTGGACT 58.308 50.000 0.00 0.00 41.57 3.85
432 433 2.808933 CGCAACAGTTCCCTTTGGACTA 60.809 50.000 0.00 0.00 41.57 2.59
433 434 2.552743 GCAACAGTTCCCTTTGGACTAC 59.447 50.000 0.00 0.00 41.57 2.73
434 435 3.146847 CAACAGTTCCCTTTGGACTACC 58.853 50.000 0.00 0.00 41.57 3.18
435 436 1.346722 ACAGTTCCCTTTGGACTACCG 59.653 52.381 0.00 0.00 41.57 4.02
436 437 1.621814 CAGTTCCCTTTGGACTACCGA 59.378 52.381 0.00 0.00 41.57 4.69
506 508 8.020819 TCTTACTTTTTATTTGAACGATGGCAG 58.979 33.333 0.00 0.00 0.00 4.85
511 513 2.017138 TTTGAACGATGGCAGCGATA 57.983 45.000 33.22 14.08 0.00 2.92
514 516 2.560504 TGAACGATGGCAGCGATAATT 58.439 42.857 33.22 15.63 0.00 1.40
519 521 7.262048 TGAACGATGGCAGCGATAATTATATA 58.738 34.615 33.22 2.80 0.00 0.86
551 564 8.804912 AGATGCTCTGAGATTTGAGTATTTTT 57.195 30.769 9.28 0.00 36.15 1.94
555 568 9.017509 TGCTCTGAGATTTGAGTATTTTTGAAT 57.982 29.630 9.28 0.00 33.22 2.57
570 583 9.226345 GTATTTTTGAATAGGAGAAATTCAGCG 57.774 33.333 0.00 0.00 42.58 5.18
577 590 3.690460 AGGAGAAATTCAGCGAACCAAT 58.310 40.909 0.00 0.00 0.00 3.16
579 592 3.691609 GGAGAAATTCAGCGAACCAATCT 59.308 43.478 0.00 0.00 0.00 2.40
580 593 4.201861 GGAGAAATTCAGCGAACCAATCTC 60.202 45.833 0.00 0.00 0.00 2.75
587 600 5.250235 TCAGCGAACCAATCTCTAGTTAG 57.750 43.478 0.00 0.00 0.00 2.34
591 604 5.594725 AGCGAACCAATCTCTAGTTAGATGA 59.405 40.000 0.00 0.00 36.34 2.92
597 610 8.429237 ACCAATCTCTAGTTAGATGATTAGGG 57.571 38.462 18.12 14.96 36.34 3.53
598 611 7.456269 ACCAATCTCTAGTTAGATGATTAGGGG 59.544 40.741 18.12 14.61 36.34 4.79
599 612 7.676043 CCAATCTCTAGTTAGATGATTAGGGGA 59.324 40.741 10.64 0.00 36.34 4.81
609 622 5.227593 AGATGATTAGGGGAACAGTGGTAT 58.772 41.667 0.00 0.00 0.00 2.73
610 623 5.672194 AGATGATTAGGGGAACAGTGGTATT 59.328 40.000 0.00 0.00 0.00 1.89
612 625 5.036916 TGATTAGGGGAACAGTGGTATTCT 58.963 41.667 0.00 0.00 0.00 2.40
613 626 6.206787 TGATTAGGGGAACAGTGGTATTCTA 58.793 40.000 0.00 0.00 0.00 2.10
614 627 6.326583 TGATTAGGGGAACAGTGGTATTCTAG 59.673 42.308 0.00 0.00 0.00 2.43
615 628 4.076175 AGGGGAACAGTGGTATTCTAGT 57.924 45.455 0.00 0.00 0.00 2.57
623 637 5.273208 ACAGTGGTATTCTAGTCCATCAGT 58.727 41.667 0.00 0.00 33.68 3.41
624 638 5.721960 ACAGTGGTATTCTAGTCCATCAGTT 59.278 40.000 0.00 0.00 33.68 3.16
632 646 7.913674 ATTCTAGTCCATCAGTTTTCAAGTC 57.086 36.000 0.00 0.00 0.00 3.01
633 647 6.419484 TCTAGTCCATCAGTTTTCAAGTCA 57.581 37.500 0.00 0.00 0.00 3.41
642 656 2.549754 AGTTTTCAAGTCATGGTGCTCG 59.450 45.455 0.00 0.00 0.00 5.03
650 664 2.158914 AGTCATGGTGCTCGCATTATCA 60.159 45.455 0.00 0.00 0.00 2.15
687 701 2.194800 TTTTTGACAATGCGCGTTCA 57.805 40.000 12.97 5.82 0.00 3.18
688 702 1.752753 TTTTGACAATGCGCGTTCAG 58.247 45.000 12.97 4.91 0.00 3.02
691 705 1.154413 GACAATGCGCGTTCAGTGG 60.154 57.895 12.97 3.30 36.47 4.00
692 706 2.176546 CAATGCGCGTTCAGTGGG 59.823 61.111 12.97 0.00 0.00 4.61
693 707 2.031919 AATGCGCGTTCAGTGGGA 59.968 55.556 9.57 0.00 0.00 4.37
696 710 4.373116 GCGCGTTCAGTGGGAGGA 62.373 66.667 8.43 0.00 0.00 3.71
698 712 2.636412 CGCGTTCAGTGGGAGGAGA 61.636 63.158 0.00 0.00 0.00 3.71
699 713 1.671742 GCGTTCAGTGGGAGGAGAA 59.328 57.895 0.00 0.00 0.00 2.87
700 714 0.390472 GCGTTCAGTGGGAGGAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
701 715 0.969894 CGTTCAGTGGGAGGAGAAGT 59.030 55.000 0.00 0.00 0.00 3.01
702 716 1.344763 CGTTCAGTGGGAGGAGAAGTT 59.655 52.381 0.00 0.00 0.00 2.66
703 717 2.224305 CGTTCAGTGGGAGGAGAAGTTT 60.224 50.000 0.00 0.00 0.00 2.66
704 718 3.403968 GTTCAGTGGGAGGAGAAGTTTC 58.596 50.000 0.00 0.00 0.00 2.78
705 719 1.978580 TCAGTGGGAGGAGAAGTTTCC 59.021 52.381 0.00 0.00 37.52 3.13
706 720 1.699634 CAGTGGGAGGAGAAGTTTCCA 59.300 52.381 6.80 0.00 39.84 3.53
707 721 2.307098 CAGTGGGAGGAGAAGTTTCCAT 59.693 50.000 6.80 0.00 39.84 3.41
708 722 2.573915 AGTGGGAGGAGAAGTTTCCATC 59.426 50.000 6.80 0.00 39.84 3.51
709 723 1.555075 TGGGAGGAGAAGTTTCCATCG 59.445 52.381 6.80 0.00 39.84 3.84
710 724 1.831736 GGGAGGAGAAGTTTCCATCGA 59.168 52.381 0.00 0.00 39.84 3.59
711 725 2.418884 GGGAGGAGAAGTTTCCATCGAC 60.419 54.545 0.00 0.00 39.84 4.20
712 726 2.498078 GGAGGAGAAGTTTCCATCGACT 59.502 50.000 0.00 0.00 39.84 4.18
713 727 3.700038 GGAGGAGAAGTTTCCATCGACTA 59.300 47.826 0.00 0.00 39.84 2.59
714 728 4.440387 GGAGGAGAAGTTTCCATCGACTAC 60.440 50.000 0.00 0.00 39.84 2.73
715 729 4.087182 AGGAGAAGTTTCCATCGACTACA 58.913 43.478 0.00 0.00 39.84 2.74
716 730 4.527038 AGGAGAAGTTTCCATCGACTACAA 59.473 41.667 0.00 0.00 39.84 2.41
717 731 4.865365 GGAGAAGTTTCCATCGACTACAAG 59.135 45.833 0.00 0.00 37.20 3.16
718 732 4.822026 AGAAGTTTCCATCGACTACAAGG 58.178 43.478 0.00 0.00 0.00 3.61
719 733 2.973945 AGTTTCCATCGACTACAAGGC 58.026 47.619 0.00 0.00 0.00 4.35
720 734 2.567615 AGTTTCCATCGACTACAAGGCT 59.432 45.455 0.00 0.00 0.00 4.58
721 735 3.008049 AGTTTCCATCGACTACAAGGCTT 59.992 43.478 0.00 0.00 0.00 4.35
722 736 2.961526 TCCATCGACTACAAGGCTTC 57.038 50.000 0.00 0.00 0.00 3.86
723 737 1.480954 TCCATCGACTACAAGGCTTCC 59.519 52.381 0.00 0.00 0.00 3.46
724 738 1.207089 CCATCGACTACAAGGCTTCCA 59.793 52.381 0.00 0.00 0.00 3.53
725 739 2.271800 CATCGACTACAAGGCTTCCAC 58.728 52.381 0.00 0.00 0.00 4.02
726 740 0.242825 TCGACTACAAGGCTTCCACG 59.757 55.000 0.00 0.00 0.00 4.94
727 741 0.736325 CGACTACAAGGCTTCCACGG 60.736 60.000 0.00 0.00 0.00 4.94
728 742 1.003718 ACTACAAGGCTTCCACGGC 60.004 57.895 0.00 0.00 0.00 5.68
729 743 1.003839 CTACAAGGCTTCCACGGCA 60.004 57.895 0.00 0.00 0.00 5.69
743 757 2.096496 CCACGGCAACTTCATCAATCTC 59.904 50.000 0.00 0.00 0.00 2.75
746 760 3.189287 ACGGCAACTTCATCAATCTCAAC 59.811 43.478 0.00 0.00 0.00 3.18
757 771 8.983702 TTCATCAATCTCAACATGATATTCCA 57.016 30.769 0.00 0.00 32.73 3.53
765 779 5.748402 TCAACATGATATTCCAGCTCAGTT 58.252 37.500 0.00 0.00 0.00 3.16
810 824 4.765273 AGGATGTGCGTGTGTATTCATAA 58.235 39.130 0.00 0.00 0.00 1.90
812 826 4.024893 GGATGTGCGTGTGTATTCATAAGG 60.025 45.833 0.00 0.00 0.00 2.69
813 827 4.195225 TGTGCGTGTGTATTCATAAGGA 57.805 40.909 0.00 0.00 0.00 3.36
814 828 4.765273 TGTGCGTGTGTATTCATAAGGAT 58.235 39.130 0.00 0.00 0.00 3.24
815 829 5.908341 TGTGCGTGTGTATTCATAAGGATA 58.092 37.500 0.00 0.00 0.00 2.59
822 836 7.594015 CGTGTGTATTCATAAGGATAGGTGTAC 59.406 40.741 0.00 0.00 0.00 2.90
823 837 8.418662 GTGTGTATTCATAAGGATAGGTGTACA 58.581 37.037 0.00 0.00 0.00 2.90
857 912 3.631144 AGTGTGTCGAAACAAATGCATG 58.369 40.909 10.72 0.00 37.08 4.06
859 914 1.720852 GTGTCGAAACAAATGCATGGC 59.279 47.619 0.00 0.00 37.08 4.40
861 916 0.109365 TCGAAACAAATGCATGGCCG 60.109 50.000 0.00 1.57 0.00 6.13
883 966 2.519013 GCTTTTGTCCATTCCTCCACT 58.481 47.619 0.00 0.00 0.00 4.00
930 1013 2.095617 CGCATGTTCTTTGATGCTCACA 60.096 45.455 0.00 0.00 42.40 3.58
980 1066 2.401583 TATGAAGCCGCACACTGATT 57.598 45.000 0.00 0.00 0.00 2.57
1461 1565 2.682136 TCCTTCCGTGCCATCCGA 60.682 61.111 0.00 0.00 0.00 4.55
1922 2039 1.924524 CAACCTCCAACGCGTACATAG 59.075 52.381 14.46 8.04 0.00 2.23
1924 2041 2.368439 ACCTCCAACGCGTACATAGTA 58.632 47.619 14.46 0.00 0.00 1.82
1940 2057 1.407936 AGTATCTCGCTCTGCCATGT 58.592 50.000 0.00 0.00 0.00 3.21
1968 2141 1.125566 GCGCACTACACTAACCGTTTC 59.874 52.381 0.30 0.00 0.00 2.78
1969 2142 2.669364 CGCACTACACTAACCGTTTCT 58.331 47.619 0.00 0.00 0.00 2.52
1970 2143 3.054878 CGCACTACACTAACCGTTTCTT 58.945 45.455 0.00 0.00 0.00 2.52
1972 2145 4.375706 CGCACTACACTAACCGTTTCTTTC 60.376 45.833 0.00 0.00 0.00 2.62
2589 2836 3.706373 AGGCGTTCGGCATCACCT 61.706 61.111 19.67 1.72 46.16 4.00
2682 2941 0.320421 ACGTGCATGTGTGTACTCCC 60.320 55.000 11.65 0.00 38.62 4.30
2684 2943 1.726853 GTGCATGTGTGTACTCCCTC 58.273 55.000 0.00 0.00 37.87 4.30
2685 2944 0.246360 TGCATGTGTGTACTCCCTCG 59.754 55.000 0.00 0.00 0.00 4.63
2686 2945 0.460284 GCATGTGTGTACTCCCTCGG 60.460 60.000 0.00 0.00 0.00 4.63
2687 2946 0.895530 CATGTGTGTACTCCCTCGGT 59.104 55.000 0.00 0.00 0.00 4.69
2688 2947 2.097036 CATGTGTGTACTCCCTCGGTA 58.903 52.381 0.00 0.00 0.00 4.02
2689 2948 1.538047 TGTGTGTACTCCCTCGGTAC 58.462 55.000 0.00 0.00 39.70 3.34
2690 2949 1.074405 TGTGTGTACTCCCTCGGTACT 59.926 52.381 0.00 0.00 39.89 2.73
2691 2950 2.165998 GTGTGTACTCCCTCGGTACTT 58.834 52.381 0.00 0.00 39.89 2.24
2703 2962 5.954150 TCCCTCGGTACTTAAAAGAGTGTAT 59.046 40.000 0.00 0.00 0.00 2.29
2930 3192 5.499004 TGGCAGTACACTCTTTAAAGGAT 57.501 39.130 15.13 1.07 0.00 3.24
2945 3207 2.088104 AGGATGGAGGAAGTATGCGA 57.912 50.000 0.00 0.00 0.00 5.10
2956 3218 3.305064 GGAAGTATGCGAAAAACAAGCCA 60.305 43.478 0.00 0.00 0.00 4.75
2959 3221 1.981254 ATGCGAAAAACAAGCCATCG 58.019 45.000 0.00 0.00 36.64 3.84
2972 3234 4.142403 ACAAGCCATCGTCAATGTATTTGG 60.142 41.667 0.00 0.00 35.92 3.28
3013 3275 5.912892 TGTTGAATCTACTTGACAGTGTGA 58.087 37.500 0.00 0.00 34.06 3.58
3071 3339 7.856145 AGACAAGTATGATTTTTCTAGCAGG 57.144 36.000 0.00 0.00 0.00 4.85
3085 3353 3.074281 CAGGCCCGGTTTCTACCA 58.926 61.111 0.00 0.00 45.31 3.25
3087 3355 1.229400 AGGCCCGGTTTCTACCAGA 60.229 57.895 0.00 0.00 45.31 3.86
3204 3474 6.432403 ACCTTCTCTCTTCTTCAATCAAGT 57.568 37.500 0.00 0.00 33.27 3.16
3271 3541 3.526534 GAAGCCTCACAATAGAGTGACC 58.473 50.000 0.00 0.00 43.18 4.02
3272 3542 1.478510 AGCCTCACAATAGAGTGACCG 59.521 52.381 0.00 0.00 43.18 4.79
3330 3665 3.131046 CCCATCAACCCATACTTTTCAGC 59.869 47.826 0.00 0.00 0.00 4.26
3399 3997 3.314080 TCAGATTGACAAACCGTTTGGAC 59.686 43.478 24.31 18.17 44.81 4.02
3451 4049 3.900941 ACAAGATCAATTTTGGACACGC 58.099 40.909 0.00 0.00 0.00 5.34
3512 4117 7.012515 TGCATGTTTTCAATGCTTTTTCATTCT 59.987 29.630 9.55 0.00 41.52 2.40
3630 4238 3.502595 GGCTGAGTTCTAAAGGTGGTTTC 59.497 47.826 0.00 0.00 0.00 2.78
3631 4239 4.134563 GCTGAGTTCTAAAGGTGGTTTCA 58.865 43.478 0.00 0.00 0.00 2.69
3633 4241 5.938125 GCTGAGTTCTAAAGGTGGTTTCATA 59.062 40.000 0.00 0.00 0.00 2.15
3634 4242 6.128254 GCTGAGTTCTAAAGGTGGTTTCATAC 60.128 42.308 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.741830 GAGTAGGAGGCCCTTGCGC 62.742 68.421 0.00 0.00 40.78 6.09
7 8 2.501610 GAGTAGGAGGCCCTTGCG 59.498 66.667 0.00 0.00 40.78 4.85
8 9 0.398664 TAGGAGTAGGAGGCCCTTGC 60.399 60.000 0.00 0.00 40.78 4.01
9 10 1.062810 ACTAGGAGTAGGAGGCCCTTG 60.063 57.143 0.00 0.00 40.78 3.61
10 11 1.320962 ACTAGGAGTAGGAGGCCCTT 58.679 55.000 0.00 0.00 40.78 3.95
11 12 1.320962 AACTAGGAGTAGGAGGCCCT 58.679 55.000 0.00 0.00 46.62 5.19
12 13 2.446285 TCTAACTAGGAGTAGGAGGCCC 59.554 54.545 0.00 0.00 0.00 5.80
13 14 3.489355 GTCTAACTAGGAGTAGGAGGCC 58.511 54.545 0.00 0.00 0.00 5.19
14 15 3.138839 AGGTCTAACTAGGAGTAGGAGGC 59.861 52.174 0.00 0.00 0.00 4.70
15 16 4.446600 CCAGGTCTAACTAGGAGTAGGAGG 60.447 54.167 0.00 0.00 0.00 4.30
16 17 4.721132 CCAGGTCTAACTAGGAGTAGGAG 58.279 52.174 0.00 0.00 0.00 3.69
17 18 3.117587 GCCAGGTCTAACTAGGAGTAGGA 60.118 52.174 0.00 0.00 0.00 2.94
18 19 3.224269 GCCAGGTCTAACTAGGAGTAGG 58.776 54.545 0.00 0.00 0.00 3.18
19 20 3.224269 GGCCAGGTCTAACTAGGAGTAG 58.776 54.545 0.00 0.00 0.00 2.57
20 21 2.584031 TGGCCAGGTCTAACTAGGAGTA 59.416 50.000 0.00 0.00 0.00 2.59
21 22 1.361543 TGGCCAGGTCTAACTAGGAGT 59.638 52.381 0.00 0.00 0.00 3.85
22 23 2.160721 TGGCCAGGTCTAACTAGGAG 57.839 55.000 0.00 0.00 0.00 3.69
23 24 2.398588 CATGGCCAGGTCTAACTAGGA 58.601 52.381 13.05 0.00 0.00 2.94
24 25 1.417890 CCATGGCCAGGTCTAACTAGG 59.582 57.143 17.55 0.00 0.00 3.02
25 26 1.417890 CCCATGGCCAGGTCTAACTAG 59.582 57.143 17.55 0.00 0.00 2.57
26 27 1.507140 CCCATGGCCAGGTCTAACTA 58.493 55.000 17.55 0.00 0.00 2.24
27 28 1.926426 GCCCATGGCCAGGTCTAACT 61.926 60.000 17.55 0.00 44.06 2.24
28 29 1.453928 GCCCATGGCCAGGTCTAAC 60.454 63.158 17.55 0.00 44.06 2.34
29 30 3.006677 GCCCATGGCCAGGTCTAA 58.993 61.111 17.55 0.00 44.06 2.10
61 62 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
62 63 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
63 64 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
64 65 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
65 66 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
83 84 4.222847 GAGTAGCTTCGGGCCGGG 62.223 72.222 27.98 19.79 43.05 5.73
84 85 4.222847 GGAGTAGCTTCGGGCCGG 62.223 72.222 27.98 12.42 43.05 6.13
85 86 4.222847 GGGAGTAGCTTCGGGCCG 62.223 72.222 22.51 22.51 43.05 6.13
86 87 4.222847 CGGGAGTAGCTTCGGGCC 62.223 72.222 0.00 0.00 43.05 5.80
87 88 4.222847 CCGGGAGTAGCTTCGGGC 62.223 72.222 0.00 0.00 38.93 6.13
89 90 4.222847 GCCCGGGAGTAGCTTCGG 62.223 72.222 29.31 0.00 41.90 4.30
90 91 4.222847 GGCCCGGGAGTAGCTTCG 62.223 72.222 29.31 0.00 0.00 3.79
91 92 4.222847 CGGCCCGGGAGTAGCTTC 62.223 72.222 29.31 2.59 0.00 3.86
110 111 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
111 112 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
112 113 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
113 114 0.181350 AGGCTCAAAATCTAGGCCCG 59.819 55.000 0.00 0.00 43.36 6.13
114 115 1.685148 CAGGCTCAAAATCTAGGCCC 58.315 55.000 0.00 0.00 43.36 5.80
115 116 1.064389 ACCAGGCTCAAAATCTAGGCC 60.064 52.381 0.00 0.00 42.74 5.19
116 117 2.424956 CAACCAGGCTCAAAATCTAGGC 59.575 50.000 0.00 0.00 38.50 3.93
117 118 2.424956 GCAACCAGGCTCAAAATCTAGG 59.575 50.000 0.00 0.00 0.00 3.02
118 119 2.424956 GGCAACCAGGCTCAAAATCTAG 59.575 50.000 0.00 0.00 40.24 2.43
119 120 2.446435 GGCAACCAGGCTCAAAATCTA 58.554 47.619 0.00 0.00 40.24 1.98
120 121 1.260544 GGCAACCAGGCTCAAAATCT 58.739 50.000 0.00 0.00 40.24 2.40
121 122 3.820595 GGCAACCAGGCTCAAAATC 57.179 52.632 0.00 0.00 40.24 2.17
150 151 3.645268 AAATGTCGGGCCCAGGCTC 62.645 63.158 24.92 2.88 41.60 4.70
151 152 2.730129 AAAAATGTCGGGCCCAGGCT 62.730 55.000 24.92 0.00 41.60 4.58
152 153 0.968393 TAAAAATGTCGGGCCCAGGC 60.968 55.000 24.92 16.99 41.06 4.85
153 154 0.815095 GTAAAAATGTCGGGCCCAGG 59.185 55.000 24.92 6.44 0.00 4.45
154 155 1.472480 CTGTAAAAATGTCGGGCCCAG 59.528 52.381 24.92 15.19 0.00 4.45
155 156 1.202952 ACTGTAAAAATGTCGGGCCCA 60.203 47.619 24.92 6.15 0.00 5.36
156 157 1.541379 ACTGTAAAAATGTCGGGCCC 58.459 50.000 13.57 13.57 0.00 5.80
157 158 3.653539 AAACTGTAAAAATGTCGGGCC 57.346 42.857 0.00 0.00 0.00 5.80
158 159 4.866921 AGAAAACTGTAAAAATGTCGGGC 58.133 39.130 0.00 0.00 0.00 6.13
159 160 7.593644 CCTTTAGAAAACTGTAAAAATGTCGGG 59.406 37.037 0.00 0.00 0.00 5.14
160 161 7.593644 CCCTTTAGAAAACTGTAAAAATGTCGG 59.406 37.037 0.00 0.00 0.00 4.79
161 162 7.593644 CCCCTTTAGAAAACTGTAAAAATGTCG 59.406 37.037 0.00 0.00 0.00 4.35
162 163 7.384115 GCCCCTTTAGAAAACTGTAAAAATGTC 59.616 37.037 0.00 0.00 0.00 3.06
163 164 7.214381 GCCCCTTTAGAAAACTGTAAAAATGT 58.786 34.615 0.00 0.00 0.00 2.71
164 165 6.649141 GGCCCCTTTAGAAAACTGTAAAAATG 59.351 38.462 0.00 0.00 0.00 2.32
165 166 6.239772 GGGCCCCTTTAGAAAACTGTAAAAAT 60.240 38.462 12.23 0.00 0.00 1.82
166 167 5.070714 GGGCCCCTTTAGAAAACTGTAAAAA 59.929 40.000 12.23 0.00 0.00 1.94
167 168 4.589798 GGGCCCCTTTAGAAAACTGTAAAA 59.410 41.667 12.23 0.00 0.00 1.52
168 169 4.154176 GGGCCCCTTTAGAAAACTGTAAA 58.846 43.478 12.23 0.00 0.00 2.01
169 170 3.770046 GGGCCCCTTTAGAAAACTGTAA 58.230 45.455 12.23 0.00 0.00 2.41
170 171 2.290450 CGGGCCCCTTTAGAAAACTGTA 60.290 50.000 18.66 0.00 0.00 2.74
171 172 1.546998 CGGGCCCCTTTAGAAAACTGT 60.547 52.381 18.66 0.00 0.00 3.55
172 173 1.173913 CGGGCCCCTTTAGAAAACTG 58.826 55.000 18.66 0.00 0.00 3.16
173 174 0.039180 CCGGGCCCCTTTAGAAAACT 59.961 55.000 18.66 0.00 0.00 2.66
174 175 1.601419 GCCGGGCCCCTTTAGAAAAC 61.601 60.000 18.66 0.00 0.00 2.43
175 176 1.304630 GCCGGGCCCCTTTAGAAAA 60.305 57.895 18.66 0.00 0.00 2.29
176 177 2.357446 GCCGGGCCCCTTTAGAAA 59.643 61.111 18.66 0.00 0.00 2.52
177 178 3.735097 GGCCGGGCCCCTTTAGAA 61.735 66.667 28.23 0.00 44.06 2.10
208 209 4.799824 CATGCAAAAGCCCGCCGG 62.800 66.667 0.00 0.00 0.00 6.13
209 210 3.572196 AACATGCAAAAGCCCGCCG 62.572 57.895 0.00 0.00 0.00 6.46
210 211 1.737735 GAACATGCAAAAGCCCGCC 60.738 57.895 0.00 0.00 0.00 6.13
211 212 2.088178 CGAACATGCAAAAGCCCGC 61.088 57.895 0.00 0.00 0.00 6.13
212 213 1.444212 CCGAACATGCAAAAGCCCG 60.444 57.895 0.00 0.00 0.00 6.13
213 214 1.079888 CCCGAACATGCAAAAGCCC 60.080 57.895 0.00 0.00 0.00 5.19
214 215 1.737735 GCCCGAACATGCAAAAGCC 60.738 57.895 0.00 0.00 0.00 4.35
215 216 1.737735 GGCCCGAACATGCAAAAGC 60.738 57.895 0.00 0.00 0.00 3.51
216 217 1.444212 CGGCCCGAACATGCAAAAG 60.444 57.895 0.00 0.00 0.00 2.27
217 218 1.861542 CTCGGCCCGAACATGCAAAA 61.862 55.000 7.50 0.00 34.74 2.44
218 219 2.281831 TCGGCCCGAACATGCAAA 60.282 55.556 1.70 0.00 31.06 3.68
219 220 2.745884 CTCGGCCCGAACATGCAA 60.746 61.111 7.50 0.00 34.74 4.08
222 223 2.436646 AAGCTCGGCCCGAACATG 60.437 61.111 7.50 0.00 34.74 3.21
223 224 2.436646 CAAGCTCGGCCCGAACAT 60.437 61.111 7.50 0.00 34.74 2.71
224 225 4.697756 CCAAGCTCGGCCCGAACA 62.698 66.667 7.50 0.00 34.74 3.18
232 233 2.206536 TTTTTGGGCCCAAGCTCGG 61.207 57.895 35.02 0.00 45.33 4.63
233 234 1.006220 GTTTTTGGGCCCAAGCTCG 60.006 57.895 35.02 0.00 45.33 5.03
234 235 1.546029 CTAGTTTTTGGGCCCAAGCTC 59.454 52.381 35.02 26.42 41.29 4.09
235 236 1.632589 CTAGTTTTTGGGCCCAAGCT 58.367 50.000 35.02 31.40 39.73 3.74
236 237 0.608130 CCTAGTTTTTGGGCCCAAGC 59.392 55.000 35.02 27.17 37.24 4.01
237 238 0.608130 GCCTAGTTTTTGGGCCCAAG 59.392 55.000 35.02 23.09 39.96 3.61
238 239 2.753319 GCCTAGTTTTTGGGCCCAA 58.247 52.632 34.07 34.07 39.96 4.12
239 240 4.531351 GCCTAGTTTTTGGGCCCA 57.469 55.556 24.45 24.45 39.96 5.36
242 243 0.683179 ATCGGGCCTAGTTTTTGGGC 60.683 55.000 0.84 0.00 46.59 5.36
243 244 1.102978 CATCGGGCCTAGTTTTTGGG 58.897 55.000 0.84 0.00 0.00 4.12
244 245 1.102978 CCATCGGGCCTAGTTTTTGG 58.897 55.000 0.84 0.00 0.00 3.28
278 279 2.600470 AAAAACCTGGGCCCGAGC 60.600 61.111 19.37 0.00 38.76 5.03
292 293 0.541764 AGCCAATCCCGAGCCAAAAA 60.542 50.000 0.00 0.00 0.00 1.94
293 294 0.329931 TAGCCAATCCCGAGCCAAAA 59.670 50.000 0.00 0.00 0.00 2.44
294 295 0.107214 CTAGCCAATCCCGAGCCAAA 60.107 55.000 0.00 0.00 0.00 3.28
295 296 1.526887 CTAGCCAATCCCGAGCCAA 59.473 57.895 0.00 0.00 0.00 4.52
296 297 2.443394 CCTAGCCAATCCCGAGCCA 61.443 63.158 0.00 0.00 0.00 4.75
297 298 2.427753 CCTAGCCAATCCCGAGCC 59.572 66.667 0.00 0.00 0.00 4.70
298 299 2.281139 GCCTAGCCAATCCCGAGC 60.281 66.667 0.00 0.00 0.00 5.03
337 338 0.106719 ATACCTGGCCAAACATCGGG 60.107 55.000 7.01 4.92 0.00 5.14
338 339 2.158813 AGTATACCTGGCCAAACATCGG 60.159 50.000 7.01 5.79 0.00 4.18
339 340 3.131396 GAGTATACCTGGCCAAACATCG 58.869 50.000 7.01 0.00 0.00 3.84
340 341 3.136626 AGGAGTATACCTGGCCAAACATC 59.863 47.826 7.01 0.00 39.01 3.06
341 342 3.123273 AGGAGTATACCTGGCCAAACAT 58.877 45.455 7.01 2.09 39.01 2.71
342 343 2.557869 AGGAGTATACCTGGCCAAACA 58.442 47.619 7.01 0.00 39.01 2.83
343 344 3.710165 ACTAGGAGTATACCTGGCCAAAC 59.290 47.826 7.01 0.00 41.30 2.93
344 345 3.965347 GACTAGGAGTATACCTGGCCAAA 59.035 47.826 7.01 0.00 41.30 3.28
345 346 3.206866 AGACTAGGAGTATACCTGGCCAA 59.793 47.826 7.01 0.00 41.30 4.52
346 347 2.789992 AGACTAGGAGTATACCTGGCCA 59.210 50.000 4.71 4.71 41.30 5.36
347 348 3.529216 AGACTAGGAGTATACCTGGCC 57.471 52.381 0.00 0.00 41.30 5.36
348 349 3.502979 CGAAGACTAGGAGTATACCTGGC 59.497 52.174 0.00 0.00 41.30 4.85
349 350 4.073549 CCGAAGACTAGGAGTATACCTGG 58.926 52.174 0.00 0.00 42.88 4.45
350 351 4.970711 TCCGAAGACTAGGAGTATACCTG 58.029 47.826 0.00 0.00 40.81 4.00
351 352 5.310068 TCATCCGAAGACTAGGAGTATACCT 59.690 44.000 0.00 0.00 40.26 3.08
352 353 5.558818 TCATCCGAAGACTAGGAGTATACC 58.441 45.833 0.00 0.00 40.26 2.73
353 354 7.011669 GCTATCATCCGAAGACTAGGAGTATAC 59.988 44.444 0.00 0.00 40.26 1.47
354 355 7.049133 GCTATCATCCGAAGACTAGGAGTATA 58.951 42.308 5.90 5.36 40.26 1.47
355 356 5.883673 GCTATCATCCGAAGACTAGGAGTAT 59.116 44.000 5.90 4.66 40.26 2.12
356 357 5.221864 TGCTATCATCCGAAGACTAGGAGTA 60.222 44.000 5.90 0.00 40.26 2.59
357 358 4.076394 GCTATCATCCGAAGACTAGGAGT 58.924 47.826 5.90 0.00 40.26 3.85
358 359 4.075682 TGCTATCATCCGAAGACTAGGAG 58.924 47.826 5.90 0.15 40.26 3.69
359 360 3.821600 GTGCTATCATCCGAAGACTAGGA 59.178 47.826 2.49 2.49 41.30 2.94
360 361 3.570125 TGTGCTATCATCCGAAGACTAGG 59.430 47.826 0.00 0.00 0.00 3.02
361 362 4.837896 TGTGCTATCATCCGAAGACTAG 57.162 45.455 0.00 0.00 0.00 2.57
362 363 4.887655 TCTTGTGCTATCATCCGAAGACTA 59.112 41.667 0.00 0.00 0.00 2.59
363 364 3.701542 TCTTGTGCTATCATCCGAAGACT 59.298 43.478 0.00 0.00 0.00 3.24
364 365 4.046938 TCTTGTGCTATCATCCGAAGAC 57.953 45.455 0.00 0.00 0.00 3.01
365 366 3.954258 TCTCTTGTGCTATCATCCGAAGA 59.046 43.478 0.00 0.00 0.00 2.87
366 367 4.297510 CTCTCTTGTGCTATCATCCGAAG 58.702 47.826 0.00 0.00 0.00 3.79
367 368 3.491619 GCTCTCTTGTGCTATCATCCGAA 60.492 47.826 0.00 0.00 0.00 4.30
368 369 2.035193 GCTCTCTTGTGCTATCATCCGA 59.965 50.000 0.00 0.00 0.00 4.55
369 370 2.223900 TGCTCTCTTGTGCTATCATCCG 60.224 50.000 0.00 0.00 34.18 4.18
370 371 3.391965 CTGCTCTCTTGTGCTATCATCC 58.608 50.000 0.00 0.00 34.18 3.51
371 372 2.801679 GCTGCTCTCTTGTGCTATCATC 59.198 50.000 0.00 0.00 34.18 2.92
372 373 2.435069 AGCTGCTCTCTTGTGCTATCAT 59.565 45.455 0.00 0.00 34.18 2.45
373 374 1.829849 AGCTGCTCTCTTGTGCTATCA 59.170 47.619 0.00 0.00 34.18 2.15
374 375 2.600470 AGCTGCTCTCTTGTGCTATC 57.400 50.000 0.00 0.00 34.18 2.08
375 376 2.364970 CCTAGCTGCTCTCTTGTGCTAT 59.635 50.000 4.91 0.00 35.96 2.97
376 377 1.753649 CCTAGCTGCTCTCTTGTGCTA 59.246 52.381 4.91 0.00 35.47 3.49
377 378 0.536260 CCTAGCTGCTCTCTTGTGCT 59.464 55.000 4.91 0.00 37.72 4.40
378 379 0.461693 CCCTAGCTGCTCTCTTGTGC 60.462 60.000 4.91 0.00 0.00 4.57
379 380 0.461693 GCCCTAGCTGCTCTCTTGTG 60.462 60.000 4.91 0.00 35.50 3.33
380 381 1.904032 GCCCTAGCTGCTCTCTTGT 59.096 57.895 4.91 0.00 35.50 3.16
381 382 1.227205 CGCCCTAGCTGCTCTCTTG 60.227 63.158 4.91 0.00 36.60 3.02
382 383 3.087666 GCGCCCTAGCTGCTCTCTT 62.088 63.158 4.91 0.00 36.19 2.85
383 384 3.535962 GCGCCCTAGCTGCTCTCT 61.536 66.667 4.91 0.00 36.19 3.10
384 385 4.940593 CGCGCCCTAGCTGCTCTC 62.941 72.222 4.91 0.00 36.70 3.20
399 400 3.583086 GTTGCGGATAAGGGGCGC 61.583 66.667 0.00 0.00 0.00 6.53
400 401 2.124901 TGTTGCGGATAAGGGGCG 60.125 61.111 0.00 0.00 0.00 6.13
401 402 0.679960 AACTGTTGCGGATAAGGGGC 60.680 55.000 0.00 0.00 0.00 5.80
402 403 1.379527 GAACTGTTGCGGATAAGGGG 58.620 55.000 0.00 0.00 0.00 4.79
403 404 1.379527 GGAACTGTTGCGGATAAGGG 58.620 55.000 0.00 0.00 0.00 3.95
404 405 1.065418 AGGGAACTGTTGCGGATAAGG 60.065 52.381 5.95 0.00 41.13 2.69
405 406 2.403252 AGGGAACTGTTGCGGATAAG 57.597 50.000 5.95 0.00 41.13 1.73
406 407 2.817258 CAAAGGGAACTGTTGCGGATAA 59.183 45.455 5.95 0.00 42.68 1.75
407 408 2.432444 CAAAGGGAACTGTTGCGGATA 58.568 47.619 5.95 0.00 42.68 2.59
408 409 1.247567 CAAAGGGAACTGTTGCGGAT 58.752 50.000 5.95 0.00 42.68 4.18
409 410 0.821711 CCAAAGGGAACTGTTGCGGA 60.822 55.000 5.95 0.00 42.68 5.54
410 411 0.821711 TCCAAAGGGAACTGTTGCGG 60.822 55.000 5.95 2.04 42.68 5.69
411 412 2.714259 TCCAAAGGGAACTGTTGCG 58.286 52.632 5.95 0.00 42.68 4.85
420 421 0.251297 TCGTCGGTAGTCCAAAGGGA 60.251 55.000 0.00 0.00 42.29 4.20
421 422 0.604578 TTCGTCGGTAGTCCAAAGGG 59.395 55.000 0.00 0.00 0.00 3.95
422 423 1.992170 CTTCGTCGGTAGTCCAAAGG 58.008 55.000 0.00 0.00 0.00 3.11
423 424 1.336517 TGCTTCGTCGGTAGTCCAAAG 60.337 52.381 0.00 0.00 0.00 2.77
424 425 0.675083 TGCTTCGTCGGTAGTCCAAA 59.325 50.000 0.00 0.00 0.00 3.28
425 426 0.675083 TTGCTTCGTCGGTAGTCCAA 59.325 50.000 0.00 0.00 0.00 3.53
426 427 0.892755 ATTGCTTCGTCGGTAGTCCA 59.107 50.000 0.00 0.00 0.00 4.02
427 428 1.278238 CATTGCTTCGTCGGTAGTCC 58.722 55.000 0.00 0.00 0.00 3.85
428 429 1.278238 CCATTGCTTCGTCGGTAGTC 58.722 55.000 0.00 0.00 0.00 2.59
429 430 0.606604 ACCATTGCTTCGTCGGTAGT 59.393 50.000 0.00 0.00 0.00 2.73
430 431 2.190981 GTACCATTGCTTCGTCGGTAG 58.809 52.381 0.00 0.00 33.00 3.18
431 432 1.545136 TGTACCATTGCTTCGTCGGTA 59.455 47.619 0.00 0.00 0.00 4.02
432 433 0.319083 TGTACCATTGCTTCGTCGGT 59.681 50.000 0.00 0.00 0.00 4.69
433 434 1.434555 TTGTACCATTGCTTCGTCGG 58.565 50.000 0.00 0.00 0.00 4.79
434 435 2.478894 AGTTTGTACCATTGCTTCGTCG 59.521 45.455 0.00 0.00 0.00 5.12
435 436 5.796350 ATAGTTTGTACCATTGCTTCGTC 57.204 39.130 0.00 0.00 0.00 4.20
436 437 6.821665 ACATATAGTTTGTACCATTGCTTCGT 59.178 34.615 0.00 0.00 0.00 3.85
475 477 7.597643 CGTTCAAATAAAAAGTAAGAACGCA 57.402 32.000 11.07 0.00 46.30 5.24
496 498 7.710907 ACATATATAATTATCGCTGCCATCGTT 59.289 33.333 0.00 0.00 0.00 3.85
506 508 9.265901 AGCATCTCCAACATATATAATTATCGC 57.734 33.333 0.00 0.00 0.00 4.58
551 564 4.876107 GGTTCGCTGAATTTCTCCTATTCA 59.124 41.667 0.00 0.00 39.12 2.57
555 568 3.973206 TGGTTCGCTGAATTTCTCCTA 57.027 42.857 0.00 0.00 0.00 2.94
558 571 4.633565 AGAGATTGGTTCGCTGAATTTCTC 59.366 41.667 0.00 0.00 32.71 2.87
568 581 5.833082 TCATCTAACTAGAGATTGGTTCGC 58.167 41.667 0.00 0.00 33.75 4.70
570 583 9.921637 CCTAATCATCTAACTAGAGATTGGTTC 57.078 37.037 0.00 0.00 33.75 3.62
577 590 7.592736 TGTTCCCCTAATCATCTAACTAGAGA 58.407 38.462 0.00 0.00 35.50 3.10
579 592 7.287927 CACTGTTCCCCTAATCATCTAACTAGA 59.712 40.741 0.00 0.00 36.65 2.43
580 593 7.437748 CACTGTTCCCCTAATCATCTAACTAG 58.562 42.308 0.00 0.00 0.00 2.57
587 600 3.933861 ACCACTGTTCCCCTAATCATC 57.066 47.619 0.00 0.00 0.00 2.92
591 604 6.210522 ACTAGAATACCACTGTTCCCCTAAT 58.789 40.000 0.00 0.00 0.00 1.73
597 610 5.128827 TGATGGACTAGAATACCACTGTTCC 59.871 44.000 0.00 0.00 36.49 3.62
598 611 6.127310 ACTGATGGACTAGAATACCACTGTTC 60.127 42.308 0.00 0.00 36.49 3.18
599 612 5.721960 ACTGATGGACTAGAATACCACTGTT 59.278 40.000 0.00 0.00 36.49 3.16
609 622 6.826668 TGACTTGAAAACTGATGGACTAGAA 58.173 36.000 0.00 0.00 0.00 2.10
610 623 6.419484 TGACTTGAAAACTGATGGACTAGA 57.581 37.500 0.00 0.00 0.00 2.43
612 625 5.939883 CCATGACTTGAAAACTGATGGACTA 59.060 40.000 0.00 0.00 32.20 2.59
613 626 4.763793 CCATGACTTGAAAACTGATGGACT 59.236 41.667 0.00 0.00 32.20 3.85
614 627 4.520492 ACCATGACTTGAAAACTGATGGAC 59.480 41.667 0.00 0.00 34.26 4.02
615 628 4.520111 CACCATGACTTGAAAACTGATGGA 59.480 41.667 0.00 0.00 34.26 3.41
623 637 1.266718 GCGAGCACCATGACTTGAAAA 59.733 47.619 0.00 0.00 0.00 2.29
624 638 0.874390 GCGAGCACCATGACTTGAAA 59.126 50.000 0.00 0.00 0.00 2.69
632 646 2.667448 GCATGATAATGCGAGCACCATG 60.667 50.000 18.37 18.37 37.84 3.66
633 647 1.538512 GCATGATAATGCGAGCACCAT 59.461 47.619 0.00 0.00 37.84 3.55
670 684 0.660488 ACTGAACGCGCATTGTCAAA 59.340 45.000 5.73 0.00 0.00 2.69
672 686 1.569003 CACTGAACGCGCATTGTCA 59.431 52.632 5.73 3.57 0.00 3.58
673 687 1.154413 CCACTGAACGCGCATTGTC 60.154 57.895 5.73 0.00 0.00 3.18
674 688 2.616330 CCCACTGAACGCGCATTGT 61.616 57.895 5.73 0.00 0.00 2.71
675 689 2.176546 CCCACTGAACGCGCATTG 59.823 61.111 5.73 1.09 0.00 2.82
677 691 2.434884 CTCCCACTGAACGCGCAT 60.435 61.111 5.73 0.00 0.00 4.73
678 692 4.680237 CCTCCCACTGAACGCGCA 62.680 66.667 5.73 0.00 0.00 6.09
679 693 4.373116 TCCTCCCACTGAACGCGC 62.373 66.667 5.73 0.00 0.00 6.86
680 694 2.125912 CTCCTCCCACTGAACGCG 60.126 66.667 3.53 3.53 0.00 6.01
681 695 0.390472 CTTCTCCTCCCACTGAACGC 60.390 60.000 0.00 0.00 0.00 4.84
682 696 0.969894 ACTTCTCCTCCCACTGAACG 59.030 55.000 0.00 0.00 0.00 3.95
683 697 3.403968 GAAACTTCTCCTCCCACTGAAC 58.596 50.000 0.00 0.00 0.00 3.18
684 698 2.372172 GGAAACTTCTCCTCCCACTGAA 59.628 50.000 0.00 0.00 32.21 3.02
686 700 1.699634 TGGAAACTTCTCCTCCCACTG 59.300 52.381 0.00 0.00 36.35 3.66
687 701 2.118403 TGGAAACTTCTCCTCCCACT 57.882 50.000 0.00 0.00 36.35 4.00
688 702 2.678190 CGATGGAAACTTCTCCTCCCAC 60.678 54.545 0.00 0.00 36.35 4.61
691 705 2.498078 AGTCGATGGAAACTTCTCCTCC 59.502 50.000 0.00 0.00 36.35 4.30
692 706 3.878160 AGTCGATGGAAACTTCTCCTC 57.122 47.619 0.00 0.00 36.35 3.71
693 707 4.087182 TGTAGTCGATGGAAACTTCTCCT 58.913 43.478 0.00 0.00 36.35 3.69
696 710 4.822026 CCTTGTAGTCGATGGAAACTTCT 58.178 43.478 0.00 0.00 32.56 2.85
698 712 3.008049 AGCCTTGTAGTCGATGGAAACTT 59.992 43.478 0.00 0.00 0.00 2.66
699 713 2.567615 AGCCTTGTAGTCGATGGAAACT 59.432 45.455 0.00 0.00 0.00 2.66
700 714 2.973945 AGCCTTGTAGTCGATGGAAAC 58.026 47.619 0.00 0.00 0.00 2.78
701 715 3.596214 GAAGCCTTGTAGTCGATGGAAA 58.404 45.455 0.00 0.00 0.00 3.13
702 716 2.093658 GGAAGCCTTGTAGTCGATGGAA 60.094 50.000 0.00 0.00 0.00 3.53
703 717 1.480954 GGAAGCCTTGTAGTCGATGGA 59.519 52.381 0.00 0.00 0.00 3.41
704 718 1.207089 TGGAAGCCTTGTAGTCGATGG 59.793 52.381 0.00 0.00 0.00 3.51
705 719 2.271800 GTGGAAGCCTTGTAGTCGATG 58.728 52.381 0.00 0.00 0.00 3.84
706 720 1.135083 CGTGGAAGCCTTGTAGTCGAT 60.135 52.381 0.00 0.00 0.00 3.59
707 721 0.242825 CGTGGAAGCCTTGTAGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
708 722 0.736325 CCGTGGAAGCCTTGTAGTCG 60.736 60.000 0.00 0.00 0.00 4.18
709 723 1.019805 GCCGTGGAAGCCTTGTAGTC 61.020 60.000 0.00 0.00 0.00 2.59
710 724 1.003718 GCCGTGGAAGCCTTGTAGT 60.004 57.895 0.00 0.00 0.00 2.73
711 725 0.605319 TTGCCGTGGAAGCCTTGTAG 60.605 55.000 0.00 0.00 0.00 2.74
712 726 0.887387 GTTGCCGTGGAAGCCTTGTA 60.887 55.000 0.00 0.00 0.00 2.41
713 727 2.193536 GTTGCCGTGGAAGCCTTGT 61.194 57.895 0.00 0.00 0.00 3.16
714 728 1.455383 AAGTTGCCGTGGAAGCCTTG 61.455 55.000 0.00 0.00 0.00 3.61
715 729 1.152756 AAGTTGCCGTGGAAGCCTT 60.153 52.632 0.00 0.00 0.00 4.35
716 730 1.600916 GAAGTTGCCGTGGAAGCCT 60.601 57.895 0.00 0.00 0.00 4.58
717 731 1.244019 ATGAAGTTGCCGTGGAAGCC 61.244 55.000 0.00 0.00 0.00 4.35
718 732 0.169009 GATGAAGTTGCCGTGGAAGC 59.831 55.000 0.00 0.00 0.00 3.86
719 733 1.522668 TGATGAAGTTGCCGTGGAAG 58.477 50.000 0.00 0.00 0.00 3.46
720 734 1.974265 TTGATGAAGTTGCCGTGGAA 58.026 45.000 0.00 0.00 0.00 3.53
721 735 2.083774 GATTGATGAAGTTGCCGTGGA 58.916 47.619 0.00 0.00 0.00 4.02
722 736 2.086869 AGATTGATGAAGTTGCCGTGG 58.913 47.619 0.00 0.00 0.00 4.94
723 737 2.743664 TGAGATTGATGAAGTTGCCGTG 59.256 45.455 0.00 0.00 0.00 4.94
724 738 3.057969 TGAGATTGATGAAGTTGCCGT 57.942 42.857 0.00 0.00 0.00 5.68
725 739 3.189080 TGTTGAGATTGATGAAGTTGCCG 59.811 43.478 0.00 0.00 0.00 5.69
726 740 4.771590 TGTTGAGATTGATGAAGTTGCC 57.228 40.909 0.00 0.00 0.00 4.52
727 741 5.946298 TCATGTTGAGATTGATGAAGTTGC 58.054 37.500 0.00 0.00 0.00 4.17
743 757 6.446781 AAACTGAGCTGGAATATCATGTTG 57.553 37.500 0.00 0.00 0.00 3.33
765 779 6.984474 CCTACCTCTACGAGCATATTCAAAAA 59.016 38.462 0.00 0.00 0.00 1.94
769 783 4.981812 TCCTACCTCTACGAGCATATTCA 58.018 43.478 0.00 0.00 0.00 2.57
773 787 4.072839 CACATCCTACCTCTACGAGCATA 58.927 47.826 0.00 0.00 0.00 3.14
774 788 2.887783 CACATCCTACCTCTACGAGCAT 59.112 50.000 0.00 0.00 0.00 3.79
778 792 1.306148 CGCACATCCTACCTCTACGA 58.694 55.000 0.00 0.00 0.00 3.43
780 794 1.749634 ACACGCACATCCTACCTCTAC 59.250 52.381 0.00 0.00 0.00 2.59
781 795 1.749063 CACACGCACATCCTACCTCTA 59.251 52.381 0.00 0.00 0.00 2.43
782 796 0.532573 CACACGCACATCCTACCTCT 59.467 55.000 0.00 0.00 0.00 3.69
783 797 0.246635 ACACACGCACATCCTACCTC 59.753 55.000 0.00 0.00 0.00 3.85
784 798 1.552578 TACACACGCACATCCTACCT 58.447 50.000 0.00 0.00 0.00 3.08
785 799 2.596904 ATACACACGCACATCCTACC 57.403 50.000 0.00 0.00 0.00 3.18
822 836 6.313744 TCGACACACTCATATATACAGGTG 57.686 41.667 8.38 8.38 0.00 4.00
823 837 6.954487 TTCGACACACTCATATATACAGGT 57.046 37.500 0.00 0.00 0.00 4.00
825 839 8.628882 TTGTTTCGACACACTCATATATACAG 57.371 34.615 3.37 0.00 0.00 2.74
826 840 8.989653 TTTGTTTCGACACACTCATATATACA 57.010 30.769 3.37 0.00 0.00 2.29
827 841 9.849607 CATTTGTTTCGACACACTCATATATAC 57.150 33.333 3.37 0.00 0.00 1.47
857 912 2.225791 GAATGGACAAAAGCCCGGCC 62.226 60.000 5.55 0.00 0.00 6.13
859 914 0.611896 AGGAATGGACAAAAGCCCGG 60.612 55.000 0.00 0.00 0.00 5.73
861 916 1.186200 GGAGGAATGGACAAAAGCCC 58.814 55.000 0.00 0.00 0.00 5.19
883 966 5.991606 CCTAGGTATGAAATCAAAGATGCGA 59.008 40.000 0.00 0.00 0.00 5.10
930 1013 1.610624 CGGTACACTCCATGGTTTGCT 60.611 52.381 12.58 4.14 0.00 3.91
980 1066 1.902938 TTTCGTGATGCCATTGACCA 58.097 45.000 0.00 0.00 0.00 4.02
1317 1416 4.363990 CGCACGGTGGAGCTCAGT 62.364 66.667 17.19 6.80 0.00 3.41
1922 2039 1.067669 TGACATGGCAGAGCGAGATAC 59.932 52.381 0.00 0.00 0.00 2.24
1924 2041 0.757512 ATGACATGGCAGAGCGAGAT 59.242 50.000 7.63 0.00 0.00 2.75
1940 2057 1.805539 GTGTAGTGCGCGCTGATGA 60.806 57.895 32.64 10.68 0.00 2.92
1968 2141 4.761910 ATTATATATGCGCGCGAGAAAG 57.238 40.909 37.18 2.99 0.00 2.62
1969 2142 6.085849 CGTATATTATATATGCGCGCGAGAAA 59.914 38.462 37.18 16.02 0.00 2.52
1970 2143 5.562623 CGTATATTATATATGCGCGCGAGAA 59.437 40.000 37.18 18.92 0.00 2.87
1972 2145 4.258510 GCGTATATTATATATGCGCGCGAG 60.259 45.833 37.18 8.39 45.57 5.03
2682 2941 9.199982 TGAAAATACACTCTTTTAAGTACCGAG 57.800 33.333 0.00 0.00 0.00 4.63
2734 2993 8.909708 TTCTGTACAAACTTGATCAAACTTTG 57.090 30.769 24.09 24.09 0.00 2.77
2890 3152 9.423061 GTACTGCCAACTTTATTGAAAATTCAT 57.577 29.630 0.00 0.00 37.00 2.57
2894 3156 7.951591 AGTGTACTGCCAACTTTATTGAAAAT 58.048 30.769 0.00 0.00 0.00 1.82
2899 3161 6.560253 AAGAGTGTACTGCCAACTTTATTG 57.440 37.500 0.00 0.00 0.00 1.90
2902 3164 7.227910 CCTTTAAAGAGTGTACTGCCAACTTTA 59.772 37.037 16.98 0.00 31.02 1.85
2911 3173 6.070767 TCCTCCATCCTTTAAAGAGTGTACTG 60.071 42.308 16.98 0.00 0.00 2.74
2930 3192 3.745799 TGTTTTTCGCATACTTCCTCCA 58.254 40.909 0.00 0.00 0.00 3.86
2945 3207 4.320608 ACATTGACGATGGCTTGTTTTT 57.679 36.364 7.60 0.00 40.21 1.94
2956 3218 5.475220 TGAACCAACCAAATACATTGACGAT 59.525 36.000 0.00 0.00 41.85 3.73
2959 3221 6.084326 ACTGAACCAACCAAATACATTGAC 57.916 37.500 0.00 0.00 41.85 3.18
2972 3234 3.586100 ACAACCACAAACTGAACCAAC 57.414 42.857 0.00 0.00 0.00 3.77
3013 3275 6.248569 AGTCCATCTCCCGTTATTTTACAT 57.751 37.500 0.00 0.00 0.00 2.29
3085 3353 1.644509 TATGCGCCATCCCACTATCT 58.355 50.000 4.18 0.00 0.00 1.98
3087 3355 3.347216 GAAATATGCGCCATCCCACTAT 58.653 45.455 4.18 0.00 0.00 2.12
3160 3428 6.806751 AGGTAGTATGATGTGTATGTGTCAC 58.193 40.000 0.00 0.00 36.48 3.67
3170 3438 7.581213 AGAAGAGAGAAGGTAGTATGATGTG 57.419 40.000 0.00 0.00 0.00 3.21
3177 3447 8.651589 TTGATTGAAGAAGAGAGAAGGTAGTA 57.348 34.615 0.00 0.00 0.00 1.82
3224 3494 0.250467 AGCTGTCCCACATGTCACAC 60.250 55.000 0.00 0.00 0.00 3.82
3271 3541 2.012937 TACTTCAAACATACCCGCCG 57.987 50.000 0.00 0.00 0.00 6.46
3272 3542 4.769859 TTTTACTTCAAACATACCCGCC 57.230 40.909 0.00 0.00 0.00 6.13
3422 4020 8.040132 TGTCCAAAATTGATCTTGTTTTGAAGT 58.960 29.630 21.52 0.00 42.47 3.01
3535 4141 6.527423 ACTCCAACAATAGAAACGAAACCTA 58.473 36.000 0.00 0.00 0.00 3.08
3607 4215 2.339769 ACCACCTTTAGAACTCAGCCT 58.660 47.619 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.