Multiple sequence alignment - TraesCS7A01G522600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G522600 chr7A 100.000 3761 0 0 1 3761 705598542 705602302 0.000000e+00 6946.0
1 TraesCS7A01G522600 chr7A 99.356 2793 15 1 1 2790 499576676 499573884 0.000000e+00 5055.0
2 TraesCS7A01G522600 chr7A 89.535 430 31 10 2841 3269 677824510 677824094 1.990000e-147 532.0
3 TraesCS7A01G522600 chr7A 90.948 232 20 1 3530 3761 57177825 57177595 1.010000e-80 311.0
4 TraesCS7A01G522600 chr7A 85.153 229 33 1 3530 3758 65331471 65331698 2.260000e-57 233.0
5 TraesCS7A01G522600 chr7A 87.745 204 15 5 3325 3526 705446837 705447032 2.920000e-56 230.0
6 TraesCS7A01G522600 chr7A 80.519 154 17 4 2873 3016 677828080 677827930 5.140000e-19 106.0
7 TraesCS7A01G522600 chr7A 82.258 124 17 4 3178 3299 677720632 677720752 6.650000e-18 102.0
8 TraesCS7A01G522600 chr7A 84.932 73 6 4 2777 2845 730567959 730568030 6.740000e-08 69.4
9 TraesCS7A01G522600 chr5A 99.427 2791 16 0 1 2791 2078522 2075732 0.000000e+00 5066.0
10 TraesCS7A01G522600 chr5B 99.391 2793 14 1 1 2790 473813924 473811132 0.000000e+00 5060.0
11 TraesCS7A01G522600 chr3B 99.355 2790 18 0 1 2790 769389830 769387041 0.000000e+00 5053.0
12 TraesCS7A01G522600 chr3B 99.283 2790 20 0 1 2790 406865568 406868357 0.000000e+00 5042.0
13 TraesCS7A01G522600 chr3B 90.476 42 3 1 2801 2842 774456349 774456309 2.000000e-03 54.7
14 TraesCS7A01G522600 chr3A 99.250 2799 17 2 1 2796 508178335 508175538 0.000000e+00 5049.0
15 TraesCS7A01G522600 chr3A 97.561 41 0 1 2803 2843 620753711 620753750 6.740000e-08 69.4
16 TraesCS7A01G522600 chr2B 99.284 2793 17 1 1 2790 384101803 384104595 0.000000e+00 5044.0
17 TraesCS7A01G522600 chr2B 99.284 2793 17 1 1 2790 592776180 592773388 0.000000e+00 5044.0
18 TraesCS7A01G522600 chr4A 99.179 2800 19 2 1 2797 454785774 454782976 0.000000e+00 5040.0
19 TraesCS7A01G522600 chr7D 80.712 534 49 29 2825 3318 586699596 586699077 2.130000e-97 366.0
20 TraesCS7A01G522600 chr7D 89.453 256 16 8 3067 3318 586505868 586506116 2.820000e-81 313.0
21 TraesCS7A01G522600 chr7D 91.878 197 15 1 2842 3037 586505676 586505872 1.330000e-69 274.0
22 TraesCS7A01G522600 chr7D 86.463 229 30 1 3530 3758 62112466 62112693 2.240000e-62 250.0
23 TraesCS7A01G522600 chr7D 83.333 204 15 11 3325 3528 613702598 613702782 1.800000e-38 171.0
24 TraesCS7A01G522600 chr7D 80.597 134 19 4 2871 3000 35560678 35560548 3.090000e-16 97.1
25 TraesCS7A01G522600 chr5D 93.534 232 15 0 3530 3761 482554983 482554752 2.780000e-91 346.0
26 TraesCS7A01G522600 chr5D 92.208 231 17 1 3531 3761 138479749 138479520 3.620000e-85 326.0
27 TraesCS7A01G522600 chr5D 87.179 234 27 3 3530 3761 60218571 60218803 2.880000e-66 263.0
28 TraesCS7A01G522600 chr5D 92.683 41 3 0 2796 2836 398567781 398567821 4.060000e-05 60.2
29 TraesCS7A01G522600 chr6D 93.043 230 16 0 3530 3759 62213995 62213766 1.670000e-88 337.0
30 TraesCS7A01G522600 chr6D 95.652 46 1 1 2797 2842 44004095 44004139 5.210000e-09 73.1
31 TraesCS7A01G522600 chr7B 90.948 232 20 1 3530 3761 667412102 667412332 1.010000e-80 311.0
32 TraesCS7A01G522600 chr7B 86.000 200 22 5 3122 3318 657082761 657082565 3.810000e-50 209.0
33 TraesCS7A01G522600 chr7B 90.909 88 8 0 2931 3018 657083135 657083048 6.600000e-23 119.0
34 TraesCS7A01G522600 chr4B 88.793 232 21 1 3530 3761 509584209 509584435 2.860000e-71 279.0
35 TraesCS7A01G522600 chr6B 93.750 48 3 0 2797 2844 88316832 88316879 5.210000e-09 73.1
36 TraesCS7A01G522600 chr2D 95.556 45 1 1 2797 2841 65542774 65542817 1.870000e-08 71.3
37 TraesCS7A01G522600 chr2D 100.000 36 0 0 2797 2832 14357847 14357882 2.420000e-07 67.6
38 TraesCS7A01G522600 chr1B 94.737 38 1 1 2809 2846 420362952 420362916 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G522600 chr7A 705598542 705602302 3760 False 6946 6946 100.000 1 3761 1 chr7A.!!$F4 3760
1 TraesCS7A01G522600 chr7A 499573884 499576676 2792 True 5055 5055 99.356 1 2790 1 chr7A.!!$R2 2789
2 TraesCS7A01G522600 chr7A 677824094 677828080 3986 True 319 532 85.027 2841 3269 2 chr7A.!!$R3 428
3 TraesCS7A01G522600 chr5A 2075732 2078522 2790 True 5066 5066 99.427 1 2791 1 chr5A.!!$R1 2790
4 TraesCS7A01G522600 chr5B 473811132 473813924 2792 True 5060 5060 99.391 1 2790 1 chr5B.!!$R1 2789
5 TraesCS7A01G522600 chr3B 769387041 769389830 2789 True 5053 5053 99.355 1 2790 1 chr3B.!!$R1 2789
6 TraesCS7A01G522600 chr3B 406865568 406868357 2789 False 5042 5042 99.283 1 2790 1 chr3B.!!$F1 2789
7 TraesCS7A01G522600 chr3A 508175538 508178335 2797 True 5049 5049 99.250 1 2796 1 chr3A.!!$R1 2795
8 TraesCS7A01G522600 chr2B 384101803 384104595 2792 False 5044 5044 99.284 1 2790 1 chr2B.!!$F1 2789
9 TraesCS7A01G522600 chr2B 592773388 592776180 2792 True 5044 5044 99.284 1 2790 1 chr2B.!!$R1 2789
10 TraesCS7A01G522600 chr4A 454782976 454785774 2798 True 5040 5040 99.179 1 2797 1 chr4A.!!$R1 2796
11 TraesCS7A01G522600 chr7D 586699077 586699596 519 True 366 366 80.712 2825 3318 1 chr7D.!!$R2 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 3.121944 CACTTCTGTTTCATTCTCGGTCG 59.878 47.826 0.0 0.0 0.00 4.79 F
919 920 7.342026 AGTCTTTGAGTGAAAAGTATTTGGGTT 59.658 33.333 0.0 0.0 39.02 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 1747 1.499913 TTTCCTCCAGCCATGCCTCA 61.500 55.000 0.0 0.0 0.00 3.86 R
2793 2806 2.301870 ACCATATGTGTCACGTGGTTCT 59.698 45.455 17.0 0.0 40.08 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 341 3.501828 TGCGTATGAATGTTTGCACTTCT 59.498 39.130 0.00 0.00 0.00 2.85
514 515 3.121944 CACTTCTGTTTCATTCTCGGTCG 59.878 47.826 0.00 0.00 0.00 4.79
919 920 7.342026 AGTCTTTGAGTGAAAAGTATTTGGGTT 59.658 33.333 0.00 0.00 39.02 4.11
1746 1747 2.290260 TGTCAAGATCAAGATTGGGCGT 60.290 45.455 0.00 0.00 0.00 5.68
2808 2821 2.203806 TGGAGAACCACGTGACACA 58.796 52.632 19.30 8.54 41.77 3.72
2809 2822 0.756294 TGGAGAACCACGTGACACAT 59.244 50.000 19.30 0.00 41.77 3.21
2810 2823 1.964933 TGGAGAACCACGTGACACATA 59.035 47.619 19.30 0.00 41.77 2.29
2811 2824 2.565391 TGGAGAACCACGTGACACATAT 59.435 45.455 19.30 0.00 41.77 1.78
2813 2826 2.930040 GAGAACCACGTGACACATATGG 59.070 50.000 19.30 15.60 36.46 2.74
2815 2828 3.512329 AGAACCACGTGACACATATGGTA 59.488 43.478 19.30 0.00 42.90 3.25
2816 2829 3.965379 ACCACGTGACACATATGGTAA 57.035 42.857 19.30 0.00 41.90 2.85
2818 2831 2.607635 CCACGTGACACATATGGTAAGC 59.392 50.000 19.30 0.00 0.00 3.09
2820 2833 3.682377 CACGTGACACATATGGTAAGCAA 59.318 43.478 10.90 0.00 0.00 3.91
2821 2834 4.332543 CACGTGACACATATGGTAAGCAAT 59.667 41.667 10.90 0.00 0.00 3.56
2822 2835 4.570772 ACGTGACACATATGGTAAGCAATC 59.429 41.667 7.80 0.00 0.00 2.67
2823 2836 4.024893 CGTGACACATATGGTAAGCAATCC 60.025 45.833 7.80 0.00 0.00 3.01
2824 2837 4.881273 GTGACACATATGGTAAGCAATCCA 59.119 41.667 7.80 0.00 38.14 3.41
2825 2838 5.356751 GTGACACATATGGTAAGCAATCCAA 59.643 40.000 7.80 0.00 37.27 3.53
2826 2839 5.948758 TGACACATATGGTAAGCAATCCAAA 59.051 36.000 7.80 0.00 37.27 3.28
2828 2841 5.714333 ACACATATGGTAAGCAATCCAAACA 59.286 36.000 7.80 0.00 37.27 2.83
2829 2842 6.210385 ACACATATGGTAAGCAATCCAAACAA 59.790 34.615 7.80 0.00 37.27 2.83
2830 2843 7.093377 ACACATATGGTAAGCAATCCAAACAAT 60.093 33.333 7.80 0.00 37.27 2.71
2833 2846 5.798125 TGGTAAGCAATCCAAACAATTCA 57.202 34.783 0.00 0.00 0.00 2.57
2967 3705 0.524862 CCTGCTGAACTGATGCCAAC 59.475 55.000 0.00 0.00 0.00 3.77
2973 3711 1.926511 GAACTGATGCCAACCAGCGG 61.927 60.000 0.00 0.00 41.94 5.52
3064 3831 1.062365 CCACATGTGGCATAACGCG 59.938 57.895 31.13 3.53 44.73 6.01
3065 3832 1.365368 CCACATGTGGCATAACGCGA 61.365 55.000 31.13 0.00 44.73 5.87
3066 3833 0.445829 CACATGTGGCATAACGCGAA 59.554 50.000 18.51 0.00 43.84 4.70
3067 3834 0.726827 ACATGTGGCATAACGCGAAG 59.273 50.000 15.93 0.00 43.84 3.79
3068 3835 0.027979 CATGTGGCATAACGCGAAGG 59.972 55.000 15.93 2.79 43.84 3.46
3069 3836 0.107897 ATGTGGCATAACGCGAAGGA 60.108 50.000 15.93 0.00 43.84 3.36
3111 3878 2.166459 TGGAACTCCGATGCTTCAGTAG 59.834 50.000 0.08 0.00 39.43 2.57
3113 3880 3.380637 GGAACTCCGATGCTTCAGTAGTA 59.619 47.826 0.08 0.00 0.00 1.82
3115 3882 3.622630 ACTCCGATGCTTCAGTAGTACT 58.377 45.455 0.00 0.00 0.00 2.73
3116 3883 4.778579 ACTCCGATGCTTCAGTAGTACTA 58.221 43.478 1.57 0.00 0.00 1.82
3118 3885 4.520179 TCCGATGCTTCAGTAGTACTACA 58.480 43.478 29.87 11.74 38.48 2.74
3119 3886 4.575236 TCCGATGCTTCAGTAGTACTACAG 59.425 45.833 29.87 23.59 38.48 2.74
3120 3887 4.335874 CCGATGCTTCAGTAGTACTACAGT 59.664 45.833 29.87 11.74 38.48 3.55
3122 3889 5.504337 CGATGCTTCAGTAGTACTACAGTCC 60.504 48.000 29.87 16.26 38.48 3.85
3123 3890 4.659115 TGCTTCAGTAGTACTACAGTCCA 58.341 43.478 29.87 18.20 38.48 4.02
3124 3891 5.262009 TGCTTCAGTAGTACTACAGTCCAT 58.738 41.667 29.87 9.69 38.48 3.41
3126 3893 6.888088 TGCTTCAGTAGTACTACAGTCCATTA 59.112 38.462 29.87 6.93 38.48 1.90
3127 3894 7.395206 TGCTTCAGTAGTACTACAGTCCATTAA 59.605 37.037 29.87 13.18 38.48 1.40
3128 3895 7.701501 GCTTCAGTAGTACTACAGTCCATTAAC 59.298 40.741 29.87 5.92 38.48 2.01
3139 3906 1.756538 GTCCATTAACCCATTGCCTGG 59.243 52.381 0.00 0.00 45.51 4.45
3141 3908 1.481772 CCATTAACCCATTGCCTGGTG 59.518 52.381 0.00 0.00 44.30 4.17
3151 3918 2.663826 TTGCCTGGTGTGAACAAAAC 57.336 45.000 0.00 0.00 0.00 2.43
3165 3932 7.487829 GTGTGAACAAAACATTTAAGCTTCAGA 59.512 33.333 0.00 0.00 0.00 3.27
3251 4022 2.901839 ACAATGCTCCAATTTGCCTCTT 59.098 40.909 0.00 0.00 0.00 2.85
3257 4028 4.771577 TGCTCCAATTTGCCTCTTGATTAA 59.228 37.500 0.00 0.00 0.00 1.40
3265 4036 8.662141 CAATTTGCCTCTTGATTAAAAAGATGG 58.338 33.333 4.86 8.75 33.34 3.51
3281 4052 7.716799 AAAAGATGGCAATCATACCTTGTTA 57.283 32.000 3.34 0.00 35.97 2.41
3318 4090 6.024552 TGAATAAAACCACCTTCATCTTGC 57.975 37.500 0.00 0.00 0.00 4.01
3319 4091 5.538053 TGAATAAAACCACCTTCATCTTGCA 59.462 36.000 0.00 0.00 0.00 4.08
3320 4092 5.649782 ATAAAACCACCTTCATCTTGCAG 57.350 39.130 0.00 0.00 0.00 4.41
3321 4093 1.251251 AACCACCTTCATCTTGCAGC 58.749 50.000 0.00 0.00 0.00 5.25
3322 4094 0.957395 ACCACCTTCATCTTGCAGCG 60.957 55.000 0.00 0.00 0.00 5.18
3323 4095 0.674581 CCACCTTCATCTTGCAGCGA 60.675 55.000 0.00 0.00 0.00 4.93
3324 4096 0.725686 CACCTTCATCTTGCAGCGAG 59.274 55.000 2.75 2.75 0.00 5.03
3325 4097 0.322975 ACCTTCATCTTGCAGCGAGT 59.677 50.000 9.65 0.00 0.00 4.18
3326 4098 0.725686 CCTTCATCTTGCAGCGAGTG 59.274 55.000 9.65 7.57 0.00 3.51
3327 4099 1.436600 CTTCATCTTGCAGCGAGTGT 58.563 50.000 9.65 0.00 0.00 3.55
3328 4100 2.610433 CTTCATCTTGCAGCGAGTGTA 58.390 47.619 9.65 1.42 0.00 2.90
3329 4101 2.741759 TCATCTTGCAGCGAGTGTAA 57.258 45.000 9.65 0.00 0.00 2.41
3330 4102 3.251479 TCATCTTGCAGCGAGTGTAAT 57.749 42.857 9.65 0.00 29.44 1.89
3331 4103 2.931969 TCATCTTGCAGCGAGTGTAATG 59.068 45.455 9.65 6.18 29.44 1.90
3332 4104 1.725641 TCTTGCAGCGAGTGTAATGG 58.274 50.000 9.65 0.00 29.44 3.16
3333 4105 0.729116 CTTGCAGCGAGTGTAATGGG 59.271 55.000 0.74 0.00 29.44 4.00
3334 4106 0.323302 TTGCAGCGAGTGTAATGGGA 59.677 50.000 0.00 0.00 0.00 4.37
3335 4107 0.541392 TGCAGCGAGTGTAATGGGAT 59.459 50.000 0.00 0.00 0.00 3.85
3336 4108 0.940126 GCAGCGAGTGTAATGGGATG 59.060 55.000 0.00 0.00 0.00 3.51
3337 4109 0.940126 CAGCGAGTGTAATGGGATGC 59.060 55.000 0.00 0.00 0.00 3.91
3338 4110 0.833287 AGCGAGTGTAATGGGATGCT 59.167 50.000 0.00 0.00 0.00 3.79
3339 4111 1.210478 AGCGAGTGTAATGGGATGCTT 59.790 47.619 0.00 0.00 0.00 3.91
3340 4112 2.017049 GCGAGTGTAATGGGATGCTTT 58.983 47.619 0.00 0.00 0.00 3.51
3341 4113 2.423538 GCGAGTGTAATGGGATGCTTTT 59.576 45.455 0.00 0.00 0.00 2.27
3342 4114 3.731867 GCGAGTGTAATGGGATGCTTTTG 60.732 47.826 0.00 0.00 0.00 2.44
3343 4115 3.689161 CGAGTGTAATGGGATGCTTTTGA 59.311 43.478 0.00 0.00 0.00 2.69
3344 4116 4.155826 CGAGTGTAATGGGATGCTTTTGAA 59.844 41.667 0.00 0.00 0.00 2.69
3345 4117 5.163622 CGAGTGTAATGGGATGCTTTTGAAT 60.164 40.000 0.00 0.00 0.00 2.57
3346 4118 6.610075 AGTGTAATGGGATGCTTTTGAATT 57.390 33.333 0.00 0.00 0.00 2.17
3347 4119 7.008021 AGTGTAATGGGATGCTTTTGAATTT 57.992 32.000 0.00 0.00 0.00 1.82
3348 4120 8.133024 AGTGTAATGGGATGCTTTTGAATTTA 57.867 30.769 0.00 0.00 0.00 1.40
3349 4121 8.034804 AGTGTAATGGGATGCTTTTGAATTTAC 58.965 33.333 0.00 0.00 0.00 2.01
3350 4122 7.816995 GTGTAATGGGATGCTTTTGAATTTACA 59.183 33.333 0.00 0.00 0.00 2.41
3351 4123 8.370940 TGTAATGGGATGCTTTTGAATTTACAA 58.629 29.630 0.00 0.00 0.00 2.41
3352 4124 9.382275 GTAATGGGATGCTTTTGAATTTACAAT 57.618 29.630 0.00 0.00 0.00 2.71
3353 4125 8.866970 AATGGGATGCTTTTGAATTTACAATT 57.133 26.923 0.00 0.00 0.00 2.32
3354 4126 9.956640 AATGGGATGCTTTTGAATTTACAATTA 57.043 25.926 0.00 0.00 0.00 1.40
3355 4127 8.770438 TGGGATGCTTTTGAATTTACAATTAC 57.230 30.769 0.00 0.00 0.00 1.89
3356 4128 7.821846 TGGGATGCTTTTGAATTTACAATTACC 59.178 33.333 0.00 0.00 0.00 2.85
3357 4129 7.279981 GGGATGCTTTTGAATTTACAATTACCC 59.720 37.037 0.00 0.00 0.00 3.69
3358 4130 7.821846 GGATGCTTTTGAATTTACAATTACCCA 59.178 33.333 0.00 0.00 0.00 4.51
3359 4131 8.776376 ATGCTTTTGAATTTACAATTACCCAG 57.224 30.769 0.00 0.00 0.00 4.45
3360 4132 7.158021 TGCTTTTGAATTTACAATTACCCAGG 58.842 34.615 0.00 0.00 0.00 4.45
3361 4133 6.092122 GCTTTTGAATTTACAATTACCCAGGC 59.908 38.462 0.00 0.00 0.00 4.85
3362 4134 6.672266 TTTGAATTTACAATTACCCAGGCA 57.328 33.333 0.00 0.00 0.00 4.75
3363 4135 5.913137 TGAATTTACAATTACCCAGGCAG 57.087 39.130 0.00 0.00 0.00 4.85
3364 4136 4.709397 TGAATTTACAATTACCCAGGCAGG 59.291 41.667 0.00 0.00 37.03 4.85
3365 4137 4.601406 ATTTACAATTACCCAGGCAGGA 57.399 40.909 0.00 0.00 41.22 3.86
3366 4138 4.601406 TTTACAATTACCCAGGCAGGAT 57.399 40.909 0.00 0.00 41.22 3.24
3367 4139 5.718801 TTTACAATTACCCAGGCAGGATA 57.281 39.130 0.00 0.00 41.22 2.59
3368 4140 3.864789 ACAATTACCCAGGCAGGATAG 57.135 47.619 0.00 0.00 41.22 2.08
3369 4141 2.443255 ACAATTACCCAGGCAGGATAGG 59.557 50.000 0.00 0.00 41.22 2.57
3370 4142 2.711009 CAATTACCCAGGCAGGATAGGA 59.289 50.000 0.00 0.00 41.22 2.94
3371 4143 2.579624 TTACCCAGGCAGGATAGGAA 57.420 50.000 0.00 0.00 41.22 3.36
3372 4144 2.579624 TACCCAGGCAGGATAGGAAA 57.420 50.000 0.00 0.00 41.22 3.13
3373 4145 0.919710 ACCCAGGCAGGATAGGAAAC 59.080 55.000 0.00 0.00 41.22 2.78
3374 4146 1.216990 CCCAGGCAGGATAGGAAACT 58.783 55.000 0.00 0.00 42.58 2.66
3375 4147 2.293586 ACCCAGGCAGGATAGGAAACTA 60.294 50.000 0.00 0.00 40.56 2.24
3376 4148 2.104963 CCCAGGCAGGATAGGAAACTAC 59.895 54.545 0.00 0.00 40.56 2.73
3377 4149 5.081854 CCCAGGCAGGATAGGAAACTACC 62.082 56.522 0.00 0.00 40.56 3.18
3389 4161 4.737578 AGGAAACTACCTGACTCAGTACA 58.262 43.478 5.32 0.00 40.61 2.90
3390 4162 5.145564 AGGAAACTACCTGACTCAGTACAA 58.854 41.667 5.32 0.00 40.61 2.41
3391 4163 5.244178 AGGAAACTACCTGACTCAGTACAAG 59.756 44.000 5.32 0.00 40.61 3.16
3392 4164 5.010820 GGAAACTACCTGACTCAGTACAAGT 59.989 44.000 5.32 0.00 0.00 3.16
3393 4165 6.462628 GGAAACTACCTGACTCAGTACAAGTT 60.463 42.308 5.32 6.15 0.00 2.66
3394 4166 6.481434 AACTACCTGACTCAGTACAAGTTT 57.519 37.500 5.32 0.00 0.00 2.66
3395 4167 6.481434 ACTACCTGACTCAGTACAAGTTTT 57.519 37.500 5.32 0.00 0.00 2.43
3396 4168 6.885922 ACTACCTGACTCAGTACAAGTTTTT 58.114 36.000 5.32 0.00 0.00 1.94
3431 4203 7.496529 TTTACTATACATTGGATTCAGCTGC 57.503 36.000 9.47 0.00 0.00 5.25
3432 4204 4.060900 ACTATACATTGGATTCAGCTGCG 58.939 43.478 9.47 0.00 0.00 5.18
3433 4205 1.016627 TACATTGGATTCAGCTGCGC 58.983 50.000 9.47 0.00 0.00 6.09
3434 4206 0.961857 ACATTGGATTCAGCTGCGCA 60.962 50.000 10.98 10.98 0.00 6.09
3435 4207 0.248498 CATTGGATTCAGCTGCGCAG 60.248 55.000 32.83 32.83 0.00 5.18
3436 4208 1.381928 ATTGGATTCAGCTGCGCAGG 61.382 55.000 36.47 22.12 0.00 4.85
3437 4209 3.207669 GGATTCAGCTGCGCAGGG 61.208 66.667 36.47 16.13 0.00 4.45
3438 4210 2.437359 GATTCAGCTGCGCAGGGT 60.437 61.111 36.47 20.77 0.00 4.34
3439 4211 1.153369 GATTCAGCTGCGCAGGGTA 60.153 57.895 36.47 14.20 0.00 3.69
3440 4212 0.744414 GATTCAGCTGCGCAGGGTAA 60.744 55.000 36.47 13.81 0.00 2.85
3441 4213 0.322456 ATTCAGCTGCGCAGGGTAAA 60.322 50.000 36.47 16.84 0.00 2.01
3442 4214 0.322456 TTCAGCTGCGCAGGGTAAAT 60.322 50.000 36.47 0.09 0.00 1.40
3443 4215 0.539518 TCAGCTGCGCAGGGTAAATA 59.460 50.000 36.47 3.07 0.00 1.40
3444 4216 1.065782 TCAGCTGCGCAGGGTAAATAA 60.066 47.619 36.47 2.35 0.00 1.40
3445 4217 1.742831 CAGCTGCGCAGGGTAAATAAA 59.257 47.619 36.47 0.00 0.00 1.40
3446 4218 2.358898 CAGCTGCGCAGGGTAAATAAAT 59.641 45.455 36.47 0.00 0.00 1.40
3447 4219 2.358898 AGCTGCGCAGGGTAAATAAATG 59.641 45.455 36.47 9.81 0.00 2.32
3448 4220 2.543653 GCTGCGCAGGGTAAATAAATGG 60.544 50.000 36.47 9.34 0.00 3.16
3449 4221 2.687935 CTGCGCAGGGTAAATAAATGGT 59.312 45.455 29.88 0.00 0.00 3.55
3450 4222 2.685897 TGCGCAGGGTAAATAAATGGTC 59.314 45.455 5.66 0.00 0.00 4.02
3451 4223 2.034179 GCGCAGGGTAAATAAATGGTCC 59.966 50.000 0.30 0.00 0.00 4.46
3452 4224 3.283751 CGCAGGGTAAATAAATGGTCCA 58.716 45.455 0.00 0.00 0.00 4.02
3453 4225 3.315191 CGCAGGGTAAATAAATGGTCCAG 59.685 47.826 0.00 0.00 0.00 3.86
3454 4226 4.278310 GCAGGGTAAATAAATGGTCCAGT 58.722 43.478 0.00 0.00 0.00 4.00
3455 4227 4.097892 GCAGGGTAAATAAATGGTCCAGTG 59.902 45.833 0.00 0.00 0.00 3.66
3456 4228 5.505780 CAGGGTAAATAAATGGTCCAGTGA 58.494 41.667 0.00 0.00 0.00 3.41
3457 4229 6.129179 CAGGGTAAATAAATGGTCCAGTGAT 58.871 40.000 0.00 0.00 0.00 3.06
3458 4230 6.607198 CAGGGTAAATAAATGGTCCAGTGATT 59.393 38.462 0.00 0.00 0.00 2.57
3459 4231 6.607198 AGGGTAAATAAATGGTCCAGTGATTG 59.393 38.462 2.54 0.00 0.00 2.67
3460 4232 6.605594 GGGTAAATAAATGGTCCAGTGATTGA 59.394 38.462 2.54 0.00 0.00 2.57
3461 4233 7.123547 GGGTAAATAAATGGTCCAGTGATTGAA 59.876 37.037 2.54 0.00 0.00 2.69
3462 4234 8.695456 GGTAAATAAATGGTCCAGTGATTGAAT 58.305 33.333 2.54 0.00 0.00 2.57
3465 4237 8.599624 AATAAATGGTCCAGTGATTGAATTCT 57.400 30.769 7.05 0.00 0.00 2.40
3466 4238 6.923199 AAATGGTCCAGTGATTGAATTCTT 57.077 33.333 7.05 0.00 0.00 2.52
3467 4239 6.923199 AATGGTCCAGTGATTGAATTCTTT 57.077 33.333 7.05 0.00 0.00 2.52
3468 4240 6.923199 ATGGTCCAGTGATTGAATTCTTTT 57.077 33.333 7.05 0.00 0.00 2.27
3469 4241 6.729690 TGGTCCAGTGATTGAATTCTTTTT 57.270 33.333 7.05 0.00 0.00 1.94
3470 4242 6.514947 TGGTCCAGTGATTGAATTCTTTTTG 58.485 36.000 7.05 0.00 0.00 2.44
3471 4243 5.928264 GGTCCAGTGATTGAATTCTTTTTGG 59.072 40.000 7.05 7.33 0.00 3.28
3472 4244 6.462909 GGTCCAGTGATTGAATTCTTTTTGGT 60.463 38.462 7.05 0.00 0.00 3.67
3473 4245 6.986231 GTCCAGTGATTGAATTCTTTTTGGTT 59.014 34.615 7.05 0.00 0.00 3.67
3474 4246 8.141268 GTCCAGTGATTGAATTCTTTTTGGTTA 58.859 33.333 7.05 0.00 0.00 2.85
3475 4247 8.700051 TCCAGTGATTGAATTCTTTTTGGTTAA 58.300 29.630 7.05 0.00 0.00 2.01
3476 4248 9.323985 CCAGTGATTGAATTCTTTTTGGTTAAA 57.676 29.630 7.05 0.00 0.00 1.52
3486 4258 9.558396 AATTCTTTTTGGTTAAATCATGAAGCA 57.442 25.926 0.00 0.00 0.00 3.91
3487 4259 7.945033 TCTTTTTGGTTAAATCATGAAGCAC 57.055 32.000 0.00 0.00 33.08 4.40
3488 4260 7.495901 TCTTTTTGGTTAAATCATGAAGCACA 58.504 30.769 0.00 0.00 33.08 4.57
3489 4261 8.149647 TCTTTTTGGTTAAATCATGAAGCACAT 58.850 29.630 0.00 0.00 40.17 3.21
3490 4262 8.674263 TTTTTGGTTAAATCATGAAGCACATT 57.326 26.923 0.00 0.00 37.07 2.71
3491 4263 7.887996 TTTGGTTAAATCATGAAGCACATTC 57.112 32.000 0.00 0.00 37.07 2.67
3492 4264 5.964758 TGGTTAAATCATGAAGCACATTCC 58.035 37.500 0.00 0.00 37.07 3.01
3493 4265 5.716228 TGGTTAAATCATGAAGCACATTCCT 59.284 36.000 0.00 0.00 37.07 3.36
3494 4266 6.127647 TGGTTAAATCATGAAGCACATTCCTC 60.128 38.462 0.00 0.00 37.07 3.71
3495 4267 4.627611 AAATCATGAAGCACATTCCTCG 57.372 40.909 0.00 0.00 37.07 4.63
3496 4268 1.372582 TCATGAAGCACATTCCTCGC 58.627 50.000 0.00 0.00 37.07 5.03
3497 4269 0.379669 CATGAAGCACATTCCTCGCC 59.620 55.000 0.00 0.00 37.07 5.54
3498 4270 0.749454 ATGAAGCACATTCCTCGCCC 60.749 55.000 0.00 0.00 37.08 6.13
3499 4271 1.078143 GAAGCACATTCCTCGCCCT 60.078 57.895 0.00 0.00 31.14 5.19
3500 4272 1.372087 GAAGCACATTCCTCGCCCTG 61.372 60.000 0.00 0.00 31.14 4.45
3501 4273 1.841302 AAGCACATTCCTCGCCCTGA 61.841 55.000 0.00 0.00 0.00 3.86
3502 4274 1.153086 GCACATTCCTCGCCCTGAT 60.153 57.895 0.00 0.00 0.00 2.90
3503 4275 1.442526 GCACATTCCTCGCCCTGATG 61.443 60.000 0.00 0.00 0.00 3.07
3504 4276 0.107508 CACATTCCTCGCCCTGATGT 60.108 55.000 0.00 0.00 0.00 3.06
3505 4277 0.620556 ACATTCCTCGCCCTGATGTT 59.379 50.000 0.00 0.00 0.00 2.71
3506 4278 1.837439 ACATTCCTCGCCCTGATGTTA 59.163 47.619 0.00 0.00 0.00 2.41
3507 4279 2.238646 ACATTCCTCGCCCTGATGTTAA 59.761 45.455 0.00 0.00 0.00 2.01
3508 4280 2.396590 TTCCTCGCCCTGATGTTAAC 57.603 50.000 0.00 0.00 0.00 2.01
3509 4281 1.271856 TCCTCGCCCTGATGTTAACA 58.728 50.000 11.41 11.41 0.00 2.41
3510 4282 1.066430 TCCTCGCCCTGATGTTAACAC 60.066 52.381 11.22 5.88 0.00 3.32
3511 4283 1.369625 CTCGCCCTGATGTTAACACC 58.630 55.000 11.22 0.38 0.00 4.16
3512 4284 0.035820 TCGCCCTGATGTTAACACCC 60.036 55.000 11.22 6.66 0.00 4.61
3513 4285 0.322098 CGCCCTGATGTTAACACCCA 60.322 55.000 11.22 10.98 0.00 4.51
3514 4286 1.884497 CGCCCTGATGTTAACACCCAA 60.884 52.381 11.22 0.00 0.00 4.12
3515 4287 2.243810 GCCCTGATGTTAACACCCAAA 58.756 47.619 11.22 0.00 0.00 3.28
3516 4288 2.630580 GCCCTGATGTTAACACCCAAAA 59.369 45.455 11.22 0.00 0.00 2.44
3517 4289 3.260632 GCCCTGATGTTAACACCCAAAAT 59.739 43.478 11.22 0.00 0.00 1.82
3518 4290 4.262851 GCCCTGATGTTAACACCCAAAATT 60.263 41.667 11.22 0.00 0.00 1.82
3519 4291 5.046950 GCCCTGATGTTAACACCCAAAATTA 60.047 40.000 11.22 0.00 0.00 1.40
3520 4292 6.519213 GCCCTGATGTTAACACCCAAAATTAA 60.519 38.462 11.22 0.00 0.00 1.40
3521 4293 7.096551 CCCTGATGTTAACACCCAAAATTAAG 58.903 38.462 11.22 0.00 0.00 1.85
3522 4294 6.589907 CCTGATGTTAACACCCAAAATTAAGC 59.410 38.462 11.22 0.00 0.00 3.09
3523 4295 6.459923 TGATGTTAACACCCAAAATTAAGCC 58.540 36.000 11.22 0.00 0.00 4.35
3524 4296 6.268847 TGATGTTAACACCCAAAATTAAGCCT 59.731 34.615 11.22 0.00 0.00 4.58
3525 4297 7.451877 TGATGTTAACACCCAAAATTAAGCCTA 59.548 33.333 11.22 0.00 0.00 3.93
3526 4298 7.222000 TGTTAACACCCAAAATTAAGCCTAG 57.778 36.000 3.59 0.00 0.00 3.02
3527 4299 7.005296 TGTTAACACCCAAAATTAAGCCTAGA 58.995 34.615 3.59 0.00 0.00 2.43
3528 4300 7.175990 TGTTAACACCCAAAATTAAGCCTAGAG 59.824 37.037 3.59 0.00 0.00 2.43
3529 4301 4.600062 ACACCCAAAATTAAGCCTAGAGG 58.400 43.478 0.00 0.00 38.53 3.69
3530 4302 3.954258 CACCCAAAATTAAGCCTAGAGGG 59.046 47.826 0.00 0.00 39.66 4.30
3531 4303 3.052869 ACCCAAAATTAAGCCTAGAGGGG 60.053 47.826 0.00 0.00 38.09 4.79
3533 4305 4.207955 CCAAAATTAAGCCTAGAGGGGTC 58.792 47.826 0.00 0.00 46.33 4.46
3534 4306 3.840124 AAATTAAGCCTAGAGGGGTCG 57.160 47.619 0.00 0.00 46.33 4.79
3535 4307 1.049402 ATTAAGCCTAGAGGGGTCGC 58.951 55.000 0.00 0.00 46.33 5.19
3536 4308 0.032416 TTAAGCCTAGAGGGGTCGCT 60.032 55.000 0.00 0.00 46.33 4.93
3537 4309 0.032416 TAAGCCTAGAGGGGTCGCTT 60.032 55.000 5.63 5.63 46.33 4.68
3538 4310 1.331399 AAGCCTAGAGGGGTCGCTTC 61.331 60.000 0.00 0.00 46.33 3.86
3539 4311 2.798364 GCCTAGAGGGGTCGCTTCC 61.798 68.421 0.00 0.00 35.18 3.46
3540 4312 2.491022 CCTAGAGGGGTCGCTTCCG 61.491 68.421 0.00 0.00 0.00 4.30
3541 4313 3.140225 CTAGAGGGGTCGCTTCCGC 62.140 68.421 0.00 3.55 40.15 5.54
3573 4345 3.861263 GCGAAAACCTAGCCGCCG 61.861 66.667 0.00 0.00 41.59 6.46
3574 4346 3.861263 CGAAAACCTAGCCGCCGC 61.861 66.667 0.00 0.00 0.00 6.53
3575 4347 3.506096 GAAAACCTAGCCGCCGCC 61.506 66.667 0.00 0.00 34.57 6.13
3576 4348 4.338710 AAAACCTAGCCGCCGCCA 62.339 61.111 0.00 0.00 34.57 5.69
3577 4349 4.778143 AAACCTAGCCGCCGCCAG 62.778 66.667 0.00 0.00 34.57 4.85
3587 4359 4.166888 GCCGCCAGAGCAGATCCA 62.167 66.667 0.00 0.00 39.83 3.41
3588 4360 2.202987 CCGCCAGAGCAGATCCAC 60.203 66.667 0.00 0.00 39.83 4.02
3589 4361 2.202987 CGCCAGAGCAGATCCACC 60.203 66.667 0.00 0.00 39.83 4.61
3590 4362 2.202987 GCCAGAGCAGATCCACCG 60.203 66.667 0.00 0.00 39.53 4.94
3591 4363 2.503061 CCAGAGCAGATCCACCGG 59.497 66.667 0.00 0.00 0.00 5.28
3592 4364 2.202987 CAGAGCAGATCCACCGGC 60.203 66.667 0.00 0.00 0.00 6.13
3593 4365 3.474570 AGAGCAGATCCACCGGCC 61.475 66.667 0.00 0.00 0.00 6.13
3594 4366 3.785859 GAGCAGATCCACCGGCCA 61.786 66.667 0.00 0.00 0.00 5.36
3595 4367 3.092511 AGCAGATCCACCGGCCAT 61.093 61.111 0.00 0.00 0.00 4.40
3596 4368 2.592861 GCAGATCCACCGGCCATC 60.593 66.667 0.00 0.00 0.00 3.51
3597 4369 3.112205 GCAGATCCACCGGCCATCT 62.112 63.158 0.00 2.51 0.00 2.90
3598 4370 1.528824 CAGATCCACCGGCCATCTT 59.471 57.895 0.00 0.00 0.00 2.40
3599 4371 0.533755 CAGATCCACCGGCCATCTTC 60.534 60.000 0.00 0.00 0.00 2.87
3600 4372 1.227973 GATCCACCGGCCATCTTCC 60.228 63.158 0.00 0.00 0.00 3.46
3601 4373 2.682582 GATCCACCGGCCATCTTCCC 62.683 65.000 0.00 0.00 0.00 3.97
3602 4374 4.506255 CCACCGGCCATCTTCCCC 62.506 72.222 0.00 0.00 0.00 4.81
3603 4375 3.411517 CACCGGCCATCTTCCCCT 61.412 66.667 0.00 0.00 0.00 4.79
3604 4376 3.090532 ACCGGCCATCTTCCCCTC 61.091 66.667 0.00 0.00 0.00 4.30
3605 4377 4.241555 CCGGCCATCTTCCCCTCG 62.242 72.222 2.24 0.00 0.00 4.63
3606 4378 4.918201 CGGCCATCTTCCCCTCGC 62.918 72.222 2.24 0.00 0.00 5.03
3607 4379 4.570874 GGCCATCTTCCCCTCGCC 62.571 72.222 0.00 0.00 0.00 5.54
3608 4380 4.918201 GCCATCTTCCCCTCGCCG 62.918 72.222 0.00 0.00 0.00 6.46
3609 4381 4.918201 CCATCTTCCCCTCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
3610 4382 4.918201 CATCTTCCCCTCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
3633 4405 4.612412 AAGACGTCGCCGGGCAAA 62.612 61.111 20.71 3.03 38.78 3.68
3671 4443 4.475135 GCGGGGCACTTCCTCCTC 62.475 72.222 0.00 0.00 34.39 3.71
3672 4444 3.787001 CGGGGCACTTCCTCCTCC 61.787 72.222 0.00 0.00 34.39 4.30
3673 4445 3.412408 GGGGCACTTCCTCCTCCC 61.412 72.222 0.00 0.00 36.25 4.30
3674 4446 3.787001 GGGCACTTCCTCCTCCCG 61.787 72.222 0.00 0.00 34.39 5.14
3675 4447 3.003763 GGCACTTCCTCCTCCCGT 61.004 66.667 0.00 0.00 0.00 5.28
3676 4448 2.579738 GCACTTCCTCCTCCCGTC 59.420 66.667 0.00 0.00 0.00 4.79
3677 4449 1.985116 GCACTTCCTCCTCCCGTCT 60.985 63.158 0.00 0.00 0.00 4.18
3678 4450 1.893786 CACTTCCTCCTCCCGTCTG 59.106 63.158 0.00 0.00 0.00 3.51
3679 4451 0.612174 CACTTCCTCCTCCCGTCTGA 60.612 60.000 0.00 0.00 0.00 3.27
3680 4452 0.323908 ACTTCCTCCTCCCGTCTGAG 60.324 60.000 0.00 0.00 0.00 3.35
3681 4453 1.671901 CTTCCTCCTCCCGTCTGAGC 61.672 65.000 0.00 0.00 0.00 4.26
3682 4454 2.043450 CCTCCTCCCGTCTGAGCT 60.043 66.667 0.00 0.00 0.00 4.09
3683 4455 2.124693 CCTCCTCCCGTCTGAGCTC 61.125 68.421 6.82 6.82 0.00 4.09
3684 4456 2.043852 TCCTCCCGTCTGAGCTCC 60.044 66.667 12.15 0.00 0.00 4.70
3685 4457 2.363018 CCTCCCGTCTGAGCTCCA 60.363 66.667 12.15 0.00 0.00 3.86
3686 4458 2.422231 CCTCCCGTCTGAGCTCCAG 61.422 68.421 12.15 8.95 44.27 3.86
3687 4459 3.071206 TCCCGTCTGAGCTCCAGC 61.071 66.667 12.15 0.00 42.62 4.85
3688 4460 3.385384 CCCGTCTGAGCTCCAGCA 61.385 66.667 12.15 0.00 45.16 4.41
3689 4461 2.659016 CCGTCTGAGCTCCAGCAA 59.341 61.111 12.15 0.00 45.16 3.91
3690 4462 1.739562 CCGTCTGAGCTCCAGCAAC 60.740 63.158 12.15 3.58 45.16 4.17
3691 4463 2.091112 CGTCTGAGCTCCAGCAACG 61.091 63.158 12.15 11.12 45.16 4.10
3692 4464 2.047844 TCTGAGCTCCAGCAACGC 60.048 61.111 12.15 0.00 45.16 4.84
3693 4465 3.485431 CTGAGCTCCAGCAACGCG 61.485 66.667 12.15 3.53 45.16 6.01
3704 4476 3.508840 CAACGCGGGCTTCCCATC 61.509 66.667 12.47 0.00 45.83 3.51
3705 4477 3.717294 AACGCGGGCTTCCCATCT 61.717 61.111 12.47 0.00 45.83 2.90
3706 4478 3.682292 AACGCGGGCTTCCCATCTC 62.682 63.158 12.47 0.00 45.83 2.75
3708 4480 4.918201 GCGGGCTTCCCATCTCGG 62.918 72.222 2.47 0.00 45.83 4.63
3709 4481 4.918201 CGGGCTTCCCATCTCGGC 62.918 72.222 2.47 0.00 45.83 5.54
3710 4482 4.918201 GGGCTTCCCATCTCGGCG 62.918 72.222 0.00 0.00 44.65 6.46
3711 4483 4.918201 GGCTTCCCATCTCGGCGG 62.918 72.222 7.21 0.00 0.00 6.13
3712 4484 4.918201 GCTTCCCATCTCGGCGGG 62.918 72.222 7.21 2.41 44.60 6.13
3715 4487 2.917751 TCCCATCTCGGCGGGATC 60.918 66.667 21.35 0.00 46.93 3.36
3716 4488 4.008933 CCCATCTCGGCGGGATCC 62.009 72.222 21.35 1.92 46.34 3.36
3717 4489 3.233980 CCATCTCGGCGGGATCCA 61.234 66.667 21.35 0.00 0.00 3.41
3718 4490 2.341543 CATCTCGGCGGGATCCAG 59.658 66.667 21.35 11.38 0.00 3.86
3719 4491 2.919856 ATCTCGGCGGGATCCAGG 60.920 66.667 18.19 5.84 0.00 4.45
3728 4500 3.934962 GGATCCAGGGCGCTCCTC 61.935 72.222 13.74 1.64 46.12 3.71
3729 4501 3.934962 GATCCAGGGCGCTCCTCC 61.935 72.222 13.74 3.32 46.12 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 341 5.928976 TGTCTTGGATCTGTTTCTCTTCAA 58.071 37.500 0.00 0.00 0.00 2.69
514 515 8.608317 GCTCTCTAATCTTTCTCCATTAAACAC 58.392 37.037 0.00 0.00 0.00 3.32
628 629 5.926542 GCACTAATGACTGAGAACTGTGTTA 59.073 40.000 0.00 0.00 0.00 2.41
919 920 1.669760 GTCCAACATCGGTCGGCAA 60.670 57.895 0.00 0.00 0.00 4.52
1746 1747 1.499913 TTTCCTCCAGCCATGCCTCA 61.500 55.000 0.00 0.00 0.00 3.86
2791 2804 2.736144 TATGTGTCACGTGGTTCTCC 57.264 50.000 17.00 0.00 0.00 3.71
2793 2806 2.301870 ACCATATGTGTCACGTGGTTCT 59.698 45.455 17.00 0.00 40.08 3.01
2796 2809 3.857052 CTTACCATATGTGTCACGTGGT 58.143 45.455 22.94 22.94 44.75 4.16
2797 2810 2.607635 GCTTACCATATGTGTCACGTGG 59.392 50.000 17.00 16.14 36.06 4.94
2799 2812 3.603158 TGCTTACCATATGTGTCACGT 57.397 42.857 2.65 2.65 0.00 4.49
2800 2813 4.024893 GGATTGCTTACCATATGTGTCACG 60.025 45.833 1.24 0.00 0.00 4.35
2801 2814 4.881273 TGGATTGCTTACCATATGTGTCAC 59.119 41.667 1.24 0.00 0.00 3.67
2802 2815 5.109500 TGGATTGCTTACCATATGTGTCA 57.891 39.130 1.24 0.00 0.00 3.58
2804 2817 5.714333 TGTTTGGATTGCTTACCATATGTGT 59.286 36.000 1.24 2.24 36.02 3.72
2805 2818 6.206395 TGTTTGGATTGCTTACCATATGTG 57.794 37.500 1.24 0.00 36.02 3.21
2808 2821 8.076910 TGAATTGTTTGGATTGCTTACCATAT 57.923 30.769 0.00 0.00 36.02 1.78
2809 2822 7.473735 TGAATTGTTTGGATTGCTTACCATA 57.526 32.000 0.00 0.00 36.02 2.74
2810 2823 6.357579 TGAATTGTTTGGATTGCTTACCAT 57.642 33.333 0.00 0.00 36.02 3.55
2811 2824 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
2861 3591 5.038651 TGATCAATGTGGATGCTGTGATA 57.961 39.130 0.00 0.00 0.00 2.15
2931 3669 2.496817 GCTCCAGTAGGCGTGAGG 59.503 66.667 0.00 0.00 33.74 3.86
2967 3705 1.013596 TATCGATTTTGTGCCGCTGG 58.986 50.000 1.71 0.00 0.00 4.85
2973 3711 4.515191 TCCAGGCTTATATCGATTTTGTGC 59.485 41.667 1.71 2.45 0.00 4.57
3003 3741 3.423154 GGTCCCTTCGCGTTGCTG 61.423 66.667 5.77 0.00 0.00 4.41
3055 3822 2.006772 CTGGTCCTTCGCGTTATGC 58.993 57.895 5.77 0.00 41.47 3.14
3061 3828 4.697756 TTGGGCTGGTCCTTCGCG 62.698 66.667 0.00 0.00 34.39 5.87
3063 3830 1.202348 GATTTTTGGGCTGGTCCTTCG 59.798 52.381 0.00 0.00 34.39 3.79
3064 3831 2.247358 TGATTTTTGGGCTGGTCCTTC 58.753 47.619 0.00 0.00 34.39 3.46
3065 3832 2.397044 TGATTTTTGGGCTGGTCCTT 57.603 45.000 0.00 0.00 34.39 3.36
3066 3833 2.250924 CTTGATTTTTGGGCTGGTCCT 58.749 47.619 0.00 0.00 34.39 3.85
3067 3834 1.338105 GCTTGATTTTTGGGCTGGTCC 60.338 52.381 0.00 0.00 0.00 4.46
3068 3835 1.344114 TGCTTGATTTTTGGGCTGGTC 59.656 47.619 0.00 0.00 0.00 4.02
3069 3836 1.345415 CTGCTTGATTTTTGGGCTGGT 59.655 47.619 0.00 0.00 0.00 4.00
3111 3878 5.296035 GCAATGGGTTAATGGACTGTAGTAC 59.704 44.000 0.00 0.00 0.00 2.73
3113 3880 4.270008 GCAATGGGTTAATGGACTGTAGT 58.730 43.478 0.00 0.00 0.00 2.73
3115 3882 3.268334 AGGCAATGGGTTAATGGACTGTA 59.732 43.478 0.00 0.00 0.00 2.74
3116 3883 2.042979 AGGCAATGGGTTAATGGACTGT 59.957 45.455 0.00 0.00 0.00 3.55
3118 3885 2.624029 CCAGGCAATGGGTTAATGGACT 60.624 50.000 0.00 0.00 46.36 3.85
3119 3886 1.756538 CCAGGCAATGGGTTAATGGAC 59.243 52.381 0.00 0.00 46.36 4.02
3120 3887 2.157640 CCAGGCAATGGGTTAATGGA 57.842 50.000 0.00 0.00 46.36 3.41
3139 3906 7.487829 TCTGAAGCTTAAATGTTTTGTTCACAC 59.512 33.333 0.00 0.00 0.00 3.82
3141 3908 7.487829 TGTCTGAAGCTTAAATGTTTTGTTCAC 59.512 33.333 0.00 0.00 0.00 3.18
3245 4016 5.329035 TGCCATCTTTTTAATCAAGAGGC 57.671 39.130 19.04 19.04 40.88 4.70
3251 4022 8.537728 AGGTATGATTGCCATCTTTTTAATCA 57.462 30.769 0.00 0.00 40.68 2.57
3257 4028 6.610075 AACAAGGTATGATTGCCATCTTTT 57.390 33.333 0.00 0.00 36.71 2.27
3265 4036 4.705023 ACAACCCTAACAAGGTATGATTGC 59.295 41.667 0.00 0.00 36.27 3.56
3281 4052 2.779755 TATTCATGTGCGACAACCCT 57.220 45.000 0.00 0.00 0.00 4.34
3318 4090 0.940126 GCATCCCATTACACTCGCTG 59.060 55.000 0.00 0.00 0.00 5.18
3319 4091 0.833287 AGCATCCCATTACACTCGCT 59.167 50.000 0.00 0.00 0.00 4.93
3320 4092 1.668419 AAGCATCCCATTACACTCGC 58.332 50.000 0.00 0.00 0.00 5.03
3321 4093 3.689161 TCAAAAGCATCCCATTACACTCG 59.311 43.478 0.00 0.00 0.00 4.18
3322 4094 5.643379 TTCAAAAGCATCCCATTACACTC 57.357 39.130 0.00 0.00 0.00 3.51
3323 4095 6.610075 AATTCAAAAGCATCCCATTACACT 57.390 33.333 0.00 0.00 0.00 3.55
3324 4096 7.816995 TGTAAATTCAAAAGCATCCCATTACAC 59.183 33.333 0.00 0.00 0.00 2.90
3325 4097 7.901029 TGTAAATTCAAAAGCATCCCATTACA 58.099 30.769 0.00 0.00 0.00 2.41
3326 4098 8.770438 TTGTAAATTCAAAAGCATCCCATTAC 57.230 30.769 0.00 0.00 0.00 1.89
3327 4099 9.956640 AATTGTAAATTCAAAAGCATCCCATTA 57.043 25.926 0.00 0.00 0.00 1.90
3328 4100 8.866970 AATTGTAAATTCAAAAGCATCCCATT 57.133 26.923 0.00 0.00 0.00 3.16
3329 4101 9.382275 GTAATTGTAAATTCAAAAGCATCCCAT 57.618 29.630 0.00 0.00 0.00 4.00
3330 4102 7.821846 GGTAATTGTAAATTCAAAAGCATCCCA 59.178 33.333 0.00 0.00 0.00 4.37
3331 4103 7.279981 GGGTAATTGTAAATTCAAAAGCATCCC 59.720 37.037 0.00 0.00 0.00 3.85
3332 4104 7.821846 TGGGTAATTGTAAATTCAAAAGCATCC 59.178 33.333 0.00 0.00 0.00 3.51
3333 4105 8.770438 TGGGTAATTGTAAATTCAAAAGCATC 57.230 30.769 0.00 0.00 0.00 3.91
3334 4106 7.823799 CCTGGGTAATTGTAAATTCAAAAGCAT 59.176 33.333 0.00 0.00 0.00 3.79
3335 4107 7.158021 CCTGGGTAATTGTAAATTCAAAAGCA 58.842 34.615 0.00 0.00 0.00 3.91
3336 4108 6.092122 GCCTGGGTAATTGTAAATTCAAAAGC 59.908 38.462 0.00 0.00 0.00 3.51
3337 4109 7.158021 TGCCTGGGTAATTGTAAATTCAAAAG 58.842 34.615 0.00 0.00 0.00 2.27
3338 4110 7.067496 TGCCTGGGTAATTGTAAATTCAAAA 57.933 32.000 0.00 0.00 0.00 2.44
3339 4111 6.295575 CCTGCCTGGGTAATTGTAAATTCAAA 60.296 38.462 0.00 0.00 0.00 2.69
3340 4112 5.186797 CCTGCCTGGGTAATTGTAAATTCAA 59.813 40.000 0.00 0.00 0.00 2.69
3341 4113 4.709397 CCTGCCTGGGTAATTGTAAATTCA 59.291 41.667 0.00 0.00 0.00 2.57
3342 4114 4.953579 TCCTGCCTGGGTAATTGTAAATTC 59.046 41.667 0.00 0.00 36.20 2.17
3343 4115 4.941713 TCCTGCCTGGGTAATTGTAAATT 58.058 39.130 0.00 0.00 36.20 1.82
3344 4116 4.601406 TCCTGCCTGGGTAATTGTAAAT 57.399 40.909 0.00 0.00 36.20 1.40
3345 4117 4.601406 ATCCTGCCTGGGTAATTGTAAA 57.399 40.909 0.00 0.00 36.20 2.01
3346 4118 4.104102 CCTATCCTGCCTGGGTAATTGTAA 59.896 45.833 0.00 0.00 36.20 2.41
3347 4119 3.650942 CCTATCCTGCCTGGGTAATTGTA 59.349 47.826 0.00 0.00 36.20 2.41
3348 4120 2.443255 CCTATCCTGCCTGGGTAATTGT 59.557 50.000 0.00 0.00 36.20 2.71
3349 4121 2.711009 TCCTATCCTGCCTGGGTAATTG 59.289 50.000 0.00 0.00 36.20 2.32
3350 4122 3.074857 TCCTATCCTGCCTGGGTAATT 57.925 47.619 0.00 0.00 36.20 1.40
3351 4123 2.815357 TCCTATCCTGCCTGGGTAAT 57.185 50.000 0.00 0.00 36.20 1.89
3352 4124 2.508300 GTTTCCTATCCTGCCTGGGTAA 59.492 50.000 0.00 0.00 36.20 2.85
3353 4125 2.124411 GTTTCCTATCCTGCCTGGGTA 58.876 52.381 0.00 0.00 36.20 3.69
3354 4126 0.919710 GTTTCCTATCCTGCCTGGGT 59.080 55.000 0.00 0.00 36.20 4.51
3355 4127 1.216990 AGTTTCCTATCCTGCCTGGG 58.783 55.000 0.00 0.00 36.20 4.45
3356 4128 2.104963 GGTAGTTTCCTATCCTGCCTGG 59.895 54.545 0.00 0.00 37.10 4.45
3357 4129 3.041946 AGGTAGTTTCCTATCCTGCCTG 58.958 50.000 0.00 0.00 39.47 4.85
3358 4130 3.041946 CAGGTAGTTTCCTATCCTGCCT 58.958 50.000 0.00 0.00 41.31 4.75
3359 4131 3.039011 TCAGGTAGTTTCCTATCCTGCC 58.961 50.000 0.00 0.00 39.62 4.85
3360 4132 3.707102 AGTCAGGTAGTTTCCTATCCTGC 59.293 47.826 0.00 0.00 39.62 4.85
3361 4133 4.956700 TGAGTCAGGTAGTTTCCTATCCTG 59.043 45.833 0.00 0.00 40.32 3.86
3362 4134 5.205056 CTGAGTCAGGTAGTTTCCTATCCT 58.795 45.833 12.67 0.00 35.87 3.24
3363 4135 4.957327 ACTGAGTCAGGTAGTTTCCTATCC 59.043 45.833 23.79 0.00 35.87 2.59
3364 4136 6.602406 TGTACTGAGTCAGGTAGTTTCCTATC 59.398 42.308 23.79 1.23 35.87 2.08
3365 4137 6.491383 TGTACTGAGTCAGGTAGTTTCCTAT 58.509 40.000 23.79 1.15 35.87 2.57
3366 4138 5.884322 TGTACTGAGTCAGGTAGTTTCCTA 58.116 41.667 23.79 1.42 35.87 2.94
3367 4139 4.737578 TGTACTGAGTCAGGTAGTTTCCT 58.262 43.478 23.79 2.39 38.51 3.36
3368 4140 5.010820 ACTTGTACTGAGTCAGGTAGTTTCC 59.989 44.000 23.79 3.48 35.51 3.13
3369 4141 6.086785 ACTTGTACTGAGTCAGGTAGTTTC 57.913 41.667 23.79 1.62 35.51 2.78
3370 4142 6.481434 AACTTGTACTGAGTCAGGTAGTTT 57.519 37.500 23.79 4.57 35.51 2.66
3371 4143 6.481434 AAACTTGTACTGAGTCAGGTAGTT 57.519 37.500 23.79 20.30 35.51 2.24
3372 4144 6.481434 AAAACTTGTACTGAGTCAGGTAGT 57.519 37.500 23.79 16.34 35.51 2.73
3405 4177 9.219603 GCAGCTGAATCCAATGTATAGTAAATA 57.780 33.333 20.43 0.00 0.00 1.40
3406 4178 7.095060 CGCAGCTGAATCCAATGTATAGTAAAT 60.095 37.037 20.43 0.00 0.00 1.40
3407 4179 6.202762 CGCAGCTGAATCCAATGTATAGTAAA 59.797 38.462 20.43 0.00 0.00 2.01
3408 4180 5.696270 CGCAGCTGAATCCAATGTATAGTAA 59.304 40.000 20.43 0.00 0.00 2.24
3409 4181 5.230182 CGCAGCTGAATCCAATGTATAGTA 58.770 41.667 20.43 0.00 0.00 1.82
3410 4182 4.060900 CGCAGCTGAATCCAATGTATAGT 58.939 43.478 20.43 0.00 0.00 2.12
3411 4183 4.658713 CGCAGCTGAATCCAATGTATAG 57.341 45.455 20.43 0.00 0.00 1.31
3428 4200 2.687935 ACCATTTATTTACCCTGCGCAG 59.312 45.455 30.52 30.52 0.00 5.18
3429 4201 2.685897 GACCATTTATTTACCCTGCGCA 59.314 45.455 10.98 10.98 0.00 6.09
3430 4202 2.034179 GGACCATTTATTTACCCTGCGC 59.966 50.000 0.00 0.00 0.00 6.09
3431 4203 3.283751 TGGACCATTTATTTACCCTGCG 58.716 45.455 0.00 0.00 0.00 5.18
3432 4204 4.097892 CACTGGACCATTTATTTACCCTGC 59.902 45.833 0.00 0.00 0.00 4.85
3433 4205 5.505780 TCACTGGACCATTTATTTACCCTG 58.494 41.667 0.00 0.00 0.00 4.45
3434 4206 5.789574 TCACTGGACCATTTATTTACCCT 57.210 39.130 0.00 0.00 0.00 4.34
3435 4207 6.605594 TCAATCACTGGACCATTTATTTACCC 59.394 38.462 0.00 0.00 0.00 3.69
3436 4208 7.639113 TCAATCACTGGACCATTTATTTACC 57.361 36.000 0.00 0.00 0.00 2.85
3439 4211 9.039165 AGAATTCAATCACTGGACCATTTATTT 57.961 29.630 8.44 0.00 0.00 1.40
3440 4212 8.599624 AGAATTCAATCACTGGACCATTTATT 57.400 30.769 8.44 0.00 0.00 1.40
3441 4213 8.599624 AAGAATTCAATCACTGGACCATTTAT 57.400 30.769 8.44 0.00 0.00 1.40
3442 4214 8.421249 AAAGAATTCAATCACTGGACCATTTA 57.579 30.769 8.44 0.00 0.00 1.40
3443 4215 6.923199 AAGAATTCAATCACTGGACCATTT 57.077 33.333 8.44 0.00 0.00 2.32
3444 4216 6.923199 AAAGAATTCAATCACTGGACCATT 57.077 33.333 8.44 0.00 0.00 3.16
3445 4217 6.923199 AAAAGAATTCAATCACTGGACCAT 57.077 33.333 8.44 0.00 0.00 3.55
3446 4218 6.462768 CCAAAAAGAATTCAATCACTGGACCA 60.463 38.462 8.44 0.00 0.00 4.02
3447 4219 5.928264 CCAAAAAGAATTCAATCACTGGACC 59.072 40.000 8.44 0.00 0.00 4.46
3448 4220 6.515832 ACCAAAAAGAATTCAATCACTGGAC 58.484 36.000 8.44 0.00 0.00 4.02
3449 4221 6.729690 ACCAAAAAGAATTCAATCACTGGA 57.270 33.333 8.44 0.00 0.00 3.86
3450 4222 8.885494 TTAACCAAAAAGAATTCAATCACTGG 57.115 30.769 8.44 8.66 0.00 4.00
3460 4232 9.558396 TGCTTCATGATTTAACCAAAAAGAATT 57.442 25.926 0.00 0.00 0.00 2.17
3461 4233 8.992073 GTGCTTCATGATTTAACCAAAAAGAAT 58.008 29.630 0.00 0.00 0.00 2.40
3462 4234 7.984050 TGTGCTTCATGATTTAACCAAAAAGAA 59.016 29.630 0.00 0.00 0.00 2.52
3463 4235 7.495901 TGTGCTTCATGATTTAACCAAAAAGA 58.504 30.769 0.00 0.00 0.00 2.52
3464 4236 7.712264 TGTGCTTCATGATTTAACCAAAAAG 57.288 32.000 0.00 0.00 0.00 2.27
3465 4237 8.674263 AATGTGCTTCATGATTTAACCAAAAA 57.326 26.923 0.00 0.00 36.81 1.94
3466 4238 7.387397 GGAATGTGCTTCATGATTTAACCAAAA 59.613 33.333 0.00 0.00 36.81 2.44
3467 4239 6.873076 GGAATGTGCTTCATGATTTAACCAAA 59.127 34.615 0.00 0.00 36.81 3.28
3468 4240 6.211184 AGGAATGTGCTTCATGATTTAACCAA 59.789 34.615 0.00 0.00 36.81 3.67
3469 4241 5.716228 AGGAATGTGCTTCATGATTTAACCA 59.284 36.000 0.00 0.00 36.81 3.67
3470 4242 6.212888 AGGAATGTGCTTCATGATTTAACC 57.787 37.500 0.00 0.00 36.81 2.85
3471 4243 5.967674 CGAGGAATGTGCTTCATGATTTAAC 59.032 40.000 0.00 0.00 36.81 2.01
3472 4244 5.449041 GCGAGGAATGTGCTTCATGATTTAA 60.449 40.000 0.00 0.00 36.81 1.52
3473 4245 4.035558 GCGAGGAATGTGCTTCATGATTTA 59.964 41.667 0.00 0.00 36.81 1.40
3474 4246 3.181493 GCGAGGAATGTGCTTCATGATTT 60.181 43.478 0.00 0.00 36.81 2.17
3475 4247 2.357009 GCGAGGAATGTGCTTCATGATT 59.643 45.455 0.00 0.00 36.81 2.57
3476 4248 1.945394 GCGAGGAATGTGCTTCATGAT 59.055 47.619 0.00 0.00 36.81 2.45
3477 4249 1.372582 GCGAGGAATGTGCTTCATGA 58.627 50.000 0.00 0.00 36.81 3.07
3478 4250 0.379669 GGCGAGGAATGTGCTTCATG 59.620 55.000 0.00 0.00 36.81 3.07
3479 4251 0.749454 GGGCGAGGAATGTGCTTCAT 60.749 55.000 0.00 0.00 38.57 2.57
3480 4252 1.377202 GGGCGAGGAATGTGCTTCA 60.377 57.895 0.00 0.00 35.41 3.02
3481 4253 1.078143 AGGGCGAGGAATGTGCTTC 60.078 57.895 0.00 0.00 0.00 3.86
3482 4254 1.377725 CAGGGCGAGGAATGTGCTT 60.378 57.895 0.00 0.00 0.00 3.91
3483 4255 1.630126 ATCAGGGCGAGGAATGTGCT 61.630 55.000 0.00 0.00 0.00 4.40
3484 4256 1.153086 ATCAGGGCGAGGAATGTGC 60.153 57.895 0.00 0.00 0.00 4.57
3485 4257 0.107508 ACATCAGGGCGAGGAATGTG 60.108 55.000 0.00 0.00 0.00 3.21
3486 4258 0.620556 AACATCAGGGCGAGGAATGT 59.379 50.000 0.00 0.00 0.00 2.71
3487 4259 2.614057 GTTAACATCAGGGCGAGGAATG 59.386 50.000 0.00 0.00 0.00 2.67
3488 4260 2.238646 TGTTAACATCAGGGCGAGGAAT 59.761 45.455 3.59 0.00 0.00 3.01
3489 4261 1.626321 TGTTAACATCAGGGCGAGGAA 59.374 47.619 3.59 0.00 0.00 3.36
3490 4262 1.066430 GTGTTAACATCAGGGCGAGGA 60.066 52.381 12.26 0.00 0.00 3.71
3491 4263 1.369625 GTGTTAACATCAGGGCGAGG 58.630 55.000 12.26 0.00 0.00 4.63
3492 4264 1.369625 GGTGTTAACATCAGGGCGAG 58.630 55.000 14.10 0.00 0.00 5.03
3493 4265 0.035820 GGGTGTTAACATCAGGGCGA 60.036 55.000 20.14 0.00 0.00 5.54
3494 4266 0.322098 TGGGTGTTAACATCAGGGCG 60.322 55.000 20.14 0.00 0.00 6.13
3495 4267 1.917872 TTGGGTGTTAACATCAGGGC 58.082 50.000 20.14 3.74 0.00 5.19
3496 4268 5.482163 AATTTTGGGTGTTAACATCAGGG 57.518 39.130 20.14 0.00 0.00 4.45
3497 4269 6.589907 GCTTAATTTTGGGTGTTAACATCAGG 59.410 38.462 20.14 0.04 0.00 3.86
3498 4270 6.589907 GGCTTAATTTTGGGTGTTAACATCAG 59.410 38.462 20.14 7.57 0.00 2.90
3499 4271 6.268847 AGGCTTAATTTTGGGTGTTAACATCA 59.731 34.615 20.14 14.34 0.00 3.07
3500 4272 6.697395 AGGCTTAATTTTGGGTGTTAACATC 58.303 36.000 12.26 11.38 0.00 3.06
3501 4273 6.680148 AGGCTTAATTTTGGGTGTTAACAT 57.320 33.333 12.26 0.00 0.00 2.71
3502 4274 7.005296 TCTAGGCTTAATTTTGGGTGTTAACA 58.995 34.615 3.59 3.59 0.00 2.41
3503 4275 7.362660 CCTCTAGGCTTAATTTTGGGTGTTAAC 60.363 40.741 0.00 0.00 0.00 2.01
3504 4276 6.661805 CCTCTAGGCTTAATTTTGGGTGTTAA 59.338 38.462 0.00 0.00 0.00 2.01
3505 4277 6.184789 CCTCTAGGCTTAATTTTGGGTGTTA 58.815 40.000 0.00 0.00 0.00 2.41
3506 4278 5.016831 CCTCTAGGCTTAATTTTGGGTGTT 58.983 41.667 0.00 0.00 0.00 3.32
3507 4279 4.569865 CCCTCTAGGCTTAATTTTGGGTGT 60.570 45.833 0.00 0.00 0.00 4.16
3508 4280 3.954258 CCCTCTAGGCTTAATTTTGGGTG 59.046 47.826 0.00 0.00 0.00 4.61
3509 4281 3.052869 CCCCTCTAGGCTTAATTTTGGGT 60.053 47.826 0.00 0.00 0.00 4.51
3510 4282 3.052869 ACCCCTCTAGGCTTAATTTTGGG 60.053 47.826 0.00 0.00 35.40 4.12
3511 4283 4.207955 GACCCCTCTAGGCTTAATTTTGG 58.792 47.826 0.00 0.00 0.00 3.28
3512 4284 3.877508 CGACCCCTCTAGGCTTAATTTTG 59.122 47.826 0.00 0.00 0.00 2.44
3513 4285 3.684697 GCGACCCCTCTAGGCTTAATTTT 60.685 47.826 0.00 0.00 0.00 1.82
3514 4286 2.158798 GCGACCCCTCTAGGCTTAATTT 60.159 50.000 0.00 0.00 0.00 1.82
3515 4287 1.416772 GCGACCCCTCTAGGCTTAATT 59.583 52.381 0.00 0.00 0.00 1.40
3516 4288 1.049402 GCGACCCCTCTAGGCTTAAT 58.951 55.000 0.00 0.00 0.00 1.40
3517 4289 0.032416 AGCGACCCCTCTAGGCTTAA 60.032 55.000 0.00 0.00 0.00 1.85
3518 4290 0.032416 AAGCGACCCCTCTAGGCTTA 60.032 55.000 0.00 0.00 41.73 3.09
3519 4291 1.306226 AAGCGACCCCTCTAGGCTT 60.306 57.895 0.00 0.00 38.99 4.35
3520 4292 1.758906 GAAGCGACCCCTCTAGGCT 60.759 63.158 0.00 0.00 35.01 4.58
3521 4293 2.798364 GGAAGCGACCCCTCTAGGC 61.798 68.421 0.00 0.00 0.00 3.93
3522 4294 2.491022 CGGAAGCGACCCCTCTAGG 61.491 68.421 0.00 0.00 0.00 3.02
3523 4295 3.121019 CGGAAGCGACCCCTCTAG 58.879 66.667 0.00 0.00 0.00 2.43
3552 4324 2.439701 GGCTAGGTTTTCGCCCCC 60.440 66.667 0.00 0.00 37.86 5.40
3553 4325 2.822701 CGGCTAGGTTTTCGCCCC 60.823 66.667 0.00 0.00 40.70 5.80
3554 4326 3.506096 GCGGCTAGGTTTTCGCCC 61.506 66.667 0.00 0.00 42.02 6.13
3556 4328 3.861263 CGGCGGCTAGGTTTTCGC 61.861 66.667 7.61 0.00 46.35 4.70
3557 4329 3.861263 GCGGCGGCTAGGTTTTCG 61.861 66.667 9.78 0.00 35.83 3.46
3558 4330 3.506096 GGCGGCGGCTAGGTTTTC 61.506 66.667 27.22 0.00 39.81 2.29
3559 4331 4.338710 TGGCGGCGGCTAGGTTTT 62.339 61.111 33.21 0.00 39.81 2.43
3560 4332 4.778143 CTGGCGGCGGCTAGGTTT 62.778 66.667 33.21 0.00 43.43 3.27
3570 4342 4.166888 TGGATCTGCTCTGGCGGC 62.167 66.667 0.00 0.00 44.02 6.53
3571 4343 2.202987 GTGGATCTGCTCTGGCGG 60.203 66.667 0.00 0.00 45.61 6.13
3572 4344 2.202987 GGTGGATCTGCTCTGGCG 60.203 66.667 0.00 0.00 42.25 5.69
3573 4345 2.202987 CGGTGGATCTGCTCTGGC 60.203 66.667 0.00 0.00 39.26 4.85
3574 4346 2.503061 CCGGTGGATCTGCTCTGG 59.497 66.667 0.00 0.00 0.00 3.86
3575 4347 2.202987 GCCGGTGGATCTGCTCTG 60.203 66.667 1.90 0.00 0.00 3.35
3576 4348 3.474570 GGCCGGTGGATCTGCTCT 61.475 66.667 1.90 0.00 0.00 4.09
3577 4349 3.112205 ATGGCCGGTGGATCTGCTC 62.112 63.158 1.90 0.00 0.00 4.26
3578 4350 3.092511 ATGGCCGGTGGATCTGCT 61.093 61.111 1.90 0.00 0.00 4.24
3579 4351 2.592861 GATGGCCGGTGGATCTGC 60.593 66.667 1.90 0.00 0.00 4.26
3580 4352 0.533755 GAAGATGGCCGGTGGATCTG 60.534 60.000 1.90 0.00 0.00 2.90
3581 4353 1.700042 GGAAGATGGCCGGTGGATCT 61.700 60.000 1.90 4.70 0.00 2.75
3582 4354 1.227973 GGAAGATGGCCGGTGGATC 60.228 63.158 1.90 2.14 0.00 3.36
3583 4355 2.757124 GGGAAGATGGCCGGTGGAT 61.757 63.158 1.90 0.00 0.00 3.41
3584 4356 3.407967 GGGAAGATGGCCGGTGGA 61.408 66.667 1.90 0.00 0.00 4.02
3585 4357 4.506255 GGGGAAGATGGCCGGTGG 62.506 72.222 1.90 0.00 0.00 4.61
3586 4358 3.406595 GAGGGGAAGATGGCCGGTG 62.407 68.421 1.90 0.00 0.00 4.94
3587 4359 3.090532 GAGGGGAAGATGGCCGGT 61.091 66.667 1.90 0.00 0.00 5.28
3588 4360 4.241555 CGAGGGGAAGATGGCCGG 62.242 72.222 0.00 0.00 0.00 6.13
3589 4361 4.918201 GCGAGGGGAAGATGGCCG 62.918 72.222 0.00 0.00 0.00 6.13
3590 4362 4.570874 GGCGAGGGGAAGATGGCC 62.571 72.222 0.00 0.00 32.98 5.36
3591 4363 4.918201 CGGCGAGGGGAAGATGGC 62.918 72.222 0.00 0.00 0.00 4.40
3592 4364 4.918201 GCGGCGAGGGGAAGATGG 62.918 72.222 12.98 0.00 0.00 3.51
3593 4365 4.918201 GGCGGCGAGGGGAAGATG 62.918 72.222 12.98 0.00 0.00 2.90
3654 4426 4.475135 GAGGAGGAAGTGCCCCGC 62.475 72.222 0.00 0.00 37.37 6.13
3655 4427 3.787001 GGAGGAGGAAGTGCCCCG 61.787 72.222 0.00 0.00 37.37 5.73
3656 4428 3.412408 GGGAGGAGGAAGTGCCCC 61.412 72.222 0.00 0.00 37.37 5.80
3657 4429 3.787001 CGGGAGGAGGAAGTGCCC 61.787 72.222 0.00 0.00 37.37 5.36
3658 4430 3.003763 ACGGGAGGAGGAAGTGCC 61.004 66.667 0.00 0.00 0.00 5.01
3659 4431 1.985116 AGACGGGAGGAGGAAGTGC 60.985 63.158 0.00 0.00 0.00 4.40
3660 4432 0.612174 TCAGACGGGAGGAGGAAGTG 60.612 60.000 0.00 0.00 0.00 3.16
3661 4433 0.323908 CTCAGACGGGAGGAGGAAGT 60.324 60.000 0.00 0.00 0.00 3.01
3662 4434 1.671901 GCTCAGACGGGAGGAGGAAG 61.672 65.000 3.68 0.00 35.41 3.46
3663 4435 1.682684 GCTCAGACGGGAGGAGGAA 60.683 63.158 3.68 0.00 35.41 3.36
3664 4436 2.043852 GCTCAGACGGGAGGAGGA 60.044 66.667 3.68 0.00 35.41 3.71
3665 4437 2.043450 AGCTCAGACGGGAGGAGG 60.043 66.667 3.68 0.00 35.41 4.30
3666 4438 2.124693 GGAGCTCAGACGGGAGGAG 61.125 68.421 17.19 0.00 35.41 3.69
3667 4439 2.043852 GGAGCTCAGACGGGAGGA 60.044 66.667 17.19 0.00 35.41 3.71
3668 4440 2.363018 TGGAGCTCAGACGGGAGG 60.363 66.667 17.19 0.00 35.41 4.30
3669 4441 3.074999 GCTGGAGCTCAGACGGGAG 62.075 68.421 17.19 0.44 46.18 4.30
3670 4442 3.071206 GCTGGAGCTCAGACGGGA 61.071 66.667 17.19 0.00 46.18 5.14
3671 4443 2.947532 TTGCTGGAGCTCAGACGGG 61.948 63.158 17.19 0.00 46.18 5.28
3672 4444 1.739562 GTTGCTGGAGCTCAGACGG 60.740 63.158 17.19 4.42 46.18 4.79
3673 4445 2.091112 CGTTGCTGGAGCTCAGACG 61.091 63.158 17.19 13.12 46.18 4.18
3674 4446 2.386660 GCGTTGCTGGAGCTCAGAC 61.387 63.158 17.19 4.03 46.18 3.51
3675 4447 2.047844 GCGTTGCTGGAGCTCAGA 60.048 61.111 17.19 0.00 46.18 3.27
3676 4448 3.485431 CGCGTTGCTGGAGCTCAG 61.485 66.667 17.19 11.99 46.03 3.35
3693 4465 4.918201 CGCCGAGATGGGAAGCCC 62.918 72.222 0.00 0.00 45.71 5.19
3694 4466 4.918201 CCGCCGAGATGGGAAGCC 62.918 72.222 0.00 0.00 38.63 4.35
3700 4472 3.231889 CTGGATCCCGCCGAGATGG 62.232 68.421 9.90 0.00 42.50 3.51
3701 4473 2.341543 CTGGATCCCGCCGAGATG 59.658 66.667 9.90 0.00 0.00 2.90
3702 4474 2.919856 CCTGGATCCCGCCGAGAT 60.920 66.667 9.90 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.