Multiple sequence alignment - TraesCS7A01G521900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G521900 chr7A 100.000 6414 0 0 1 6414 705441424 705447837 0.000000e+00 11845.0
1 TraesCS7A01G521900 chr7A 93.919 444 20 5 5833 6276 705604064 705604500 0.000000e+00 664.0
2 TraesCS7A01G521900 chr7A 87.319 276 28 6 2353 2625 705489884 705490155 6.250000e-80 309.0
3 TraesCS7A01G521900 chr7A 87.745 204 15 5 5414 5609 705601866 705602067 5.000000e-56 230.0
4 TraesCS7A01G521900 chr7A 89.844 128 12 1 5597 5723 705603557 705603684 5.150000e-36 163.0
5 TraesCS7A01G521900 chr7A 87.719 114 8 3 3053 3161 705507878 705507990 1.880000e-25 128.0
6 TraesCS7A01G521900 chr7B 93.586 1902 97 17 2994 4887 704669989 704671873 0.000000e+00 2813.0
7 TraesCS7A01G521900 chr7B 91.566 1162 86 9 1846 2998 704668807 704669965 0.000000e+00 1592.0
8 TraesCS7A01G521900 chr7B 88.747 782 57 18 1041 1815 704667972 704668729 0.000000e+00 928.0
9 TraesCS7A01G521900 chr7B 90.034 592 44 10 4884 5464 704671995 704672582 0.000000e+00 752.0
10 TraesCS7A01G521900 chr7B 86.170 94 13 0 6309 6402 636877064 636877157 1.140000e-17 102.0
11 TraesCS7A01G521900 chr7D 92.510 1936 102 18 3768 5686 613700948 613702857 0.000000e+00 2732.0
12 TraesCS7A01G521900 chr7D 93.597 1187 66 7 1821 2998 613698938 613700123 0.000000e+00 1762.0
13 TraesCS7A01G521900 chr7D 89.630 810 41 19 2994 3783 613700146 613700932 0.000000e+00 990.0
14 TraesCS7A01G521900 chr7D 87.559 852 101 4 1 848 555175321 555176171 0.000000e+00 981.0
15 TraesCS7A01G521900 chr7D 86.391 823 47 27 884 1694 613697810 613698579 0.000000e+00 839.0
16 TraesCS7A01G521900 chr1A 96.698 848 26 1 1 848 532417987 532417142 0.000000e+00 1410.0
17 TraesCS7A01G521900 chr1A 96.108 848 32 1 1 848 588656836 588655990 0.000000e+00 1382.0
18 TraesCS7A01G521900 chr6A 96.344 848 31 0 1 848 60995222 60994375 0.000000e+00 1395.0
19 TraesCS7A01G521900 chr6A 87.755 98 8 4 6307 6402 545886027 545885932 1.890000e-20 111.0
20 TraesCS7A01G521900 chr2A 96.424 811 29 0 38 848 778613993 778614803 0.000000e+00 1338.0
21 TraesCS7A01G521900 chr1B 87.397 849 105 2 1 848 26873334 26872487 0.000000e+00 974.0
22 TraesCS7A01G521900 chr2D 86.987 853 102 7 1 848 14257194 14256346 0.000000e+00 952.0
23 TraesCS7A01G521900 chr2D 85.714 98 9 5 6307 6402 510219193 510219287 1.470000e-16 99.0
24 TraesCS7A01G521900 chr5B 86.219 849 115 2 1 848 377621336 377620489 0.000000e+00 918.0
25 TraesCS7A01G521900 chr5B 85.395 849 122 2 1 848 391449382 391448535 0.000000e+00 880.0
26 TraesCS7A01G521900 chr3B 79.794 970 141 39 3897 4840 46784879 46785819 0.000000e+00 654.0
27 TraesCS7A01G521900 chr3B 83.072 573 76 15 1913 2476 45517897 45518457 9.600000e-138 501.0
28 TraesCS7A01G521900 chr3B 82.488 611 68 10 3824 4429 45520053 45520629 3.450000e-137 499.0
29 TraesCS7A01G521900 chr3B 79.612 309 49 9 4647 4955 45520889 45521183 6.520000e-50 209.0
30 TraesCS7A01G521900 chr3B 96.522 115 4 0 1371 1485 45517198 45517312 2.360000e-44 191.0
31 TraesCS7A01G521900 chr3B 78.689 183 29 9 1091 1271 45516937 45517111 5.260000e-21 113.0
32 TraesCS7A01G521900 chr3A 83.763 659 77 19 1833 2476 37342804 37343447 1.190000e-166 597.0
33 TraesCS7A01G521900 chr3A 83.562 657 82 19 1833 2476 37430319 37430962 5.540000e-165 592.0
34 TraesCS7A01G521900 chr3A 81.724 673 70 16 3853 4511 37345166 37345799 4.440000e-141 512.0
35 TraesCS7A01G521900 chr3A 80.992 363 53 11 4593 4955 37345805 37346151 2.280000e-69 274.0
36 TraesCS7A01G521900 chr3A 83.214 280 32 12 1207 1485 37341623 37341888 6.420000e-60 243.0
37 TraesCS7A01G521900 chr3D 83.546 626 80 15 1863 2476 27248288 27248902 1.210000e-156 564.0
38 TraesCS7A01G521900 chr3D 82.132 666 79 18 3897 4540 27936816 27937463 9.470000e-148 534.0
39 TraesCS7A01G521900 chr3D 82.362 618 70 8 3824 4435 27249803 27250387 9.600000e-138 501.0
40 TraesCS7A01G521900 chr3D 81.267 363 46 17 4593 4951 27250464 27250808 2.280000e-69 274.0
41 TraesCS7A01G521900 chr3D 79.885 348 47 22 1207 1545 27246523 27246856 3.870000e-57 233.0
42 TraesCS7A01G521900 chr3D 87.368 95 12 0 6307 6401 340702237 340702331 6.800000e-20 110.0
43 TraesCS7A01G521900 chr3D 92.105 38 3 0 6365 6402 520225180 520225217 3.000000e-03 54.7
44 TraesCS7A01G521900 chrUn 86.598 194 22 2 1820 2010 112970841 112970649 1.810000e-50 211.0
45 TraesCS7A01G521900 chr6D 88.542 96 11 0 6307 6402 471306748 471306653 4.060000e-22 117.0
46 TraesCS7A01G521900 chr5A 88.542 96 11 0 6307 6402 513966145 513966050 4.060000e-22 117.0
47 TraesCS7A01G521900 chr2B 85.263 95 9 5 6310 6402 747808746 747808655 6.850000e-15 93.5
48 TraesCS7A01G521900 chr6B 82.653 98 13 4 6307 6402 24452067 24451972 4.120000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G521900 chr7A 705441424 705447837 6413 False 11845.000000 11845 100.000000 1 6414 1 chr7A.!!$F1 6413
1 TraesCS7A01G521900 chr7A 705601866 705604500 2634 False 352.333333 664 90.502667 5414 6276 3 chr7A.!!$F4 862
2 TraesCS7A01G521900 chr7B 704667972 704672582 4610 False 1521.250000 2813 90.983250 1041 5464 4 chr7B.!!$F2 4423
3 TraesCS7A01G521900 chr7D 613697810 613702857 5047 False 1580.750000 2732 90.532000 884 5686 4 chr7D.!!$F2 4802
4 TraesCS7A01G521900 chr7D 555175321 555176171 850 False 981.000000 981 87.559000 1 848 1 chr7D.!!$F1 847
5 TraesCS7A01G521900 chr1A 532417142 532417987 845 True 1410.000000 1410 96.698000 1 848 1 chr1A.!!$R1 847
6 TraesCS7A01G521900 chr1A 588655990 588656836 846 True 1382.000000 1382 96.108000 1 848 1 chr1A.!!$R2 847
7 TraesCS7A01G521900 chr6A 60994375 60995222 847 True 1395.000000 1395 96.344000 1 848 1 chr6A.!!$R1 847
8 TraesCS7A01G521900 chr2A 778613993 778614803 810 False 1338.000000 1338 96.424000 38 848 1 chr2A.!!$F1 810
9 TraesCS7A01G521900 chr1B 26872487 26873334 847 True 974.000000 974 87.397000 1 848 1 chr1B.!!$R1 847
10 TraesCS7A01G521900 chr2D 14256346 14257194 848 True 952.000000 952 86.987000 1 848 1 chr2D.!!$R1 847
11 TraesCS7A01G521900 chr5B 377620489 377621336 847 True 918.000000 918 86.219000 1 848 1 chr5B.!!$R1 847
12 TraesCS7A01G521900 chr5B 391448535 391449382 847 True 880.000000 880 85.395000 1 848 1 chr5B.!!$R2 847
13 TraesCS7A01G521900 chr3B 46784879 46785819 940 False 654.000000 654 79.794000 3897 4840 1 chr3B.!!$F1 943
14 TraesCS7A01G521900 chr3B 45516937 45521183 4246 False 302.600000 501 84.076600 1091 4955 5 chr3B.!!$F2 3864
15 TraesCS7A01G521900 chr3A 37430319 37430962 643 False 592.000000 592 83.562000 1833 2476 1 chr3A.!!$F1 643
16 TraesCS7A01G521900 chr3A 37341623 37346151 4528 False 406.500000 597 82.423250 1207 4955 4 chr3A.!!$F2 3748
17 TraesCS7A01G521900 chr3D 27936816 27937463 647 False 534.000000 534 82.132000 3897 4540 1 chr3D.!!$F1 643
18 TraesCS7A01G521900 chr3D 27246523 27250808 4285 False 393.000000 564 81.765000 1207 4951 4 chr3D.!!$F4 3744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 886 0.323302 TTGATGAAGGCGCCACTACA 59.677 50.000 31.54 21.65 0.00 2.74 F
1682 2457 1.064803 TGTTGTGAACGTTGACATGGC 59.935 47.619 21.13 14.25 0.00 4.40 F
2972 5398 0.193321 ATCCTTTGGCCCCAAACCTT 59.807 50.000 8.35 0.00 40.51 3.50 F
3310 5891 0.393537 GTCTCCCCTCATGGCAGTTG 60.394 60.000 0.00 0.00 0.00 3.16 F
4721 7573 0.390492 AGCAACAAAGAAGCCCAAGC 59.610 50.000 0.00 0.00 40.32 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 2488 0.596600 GTGACTCGCCGAACACTTGA 60.597 55.000 14.02 0.0 0.00 3.02 R
3523 6109 0.247736 GAGGTGGTCCTGTACTGCTG 59.752 60.000 0.00 0.0 45.24 4.41 R
3814 6440 1.066303 TCACCATGTGACCGTTTTTGC 59.934 47.619 0.00 0.0 37.67 3.68 R
5181 8166 0.393077 ATATTACTGAAGCCGCGCCT 59.607 50.000 0.00 0.0 0.00 5.52 R
6325 11098 0.036010 ACCTCTCAACGCCAAGATGG 60.036 55.000 0.00 0.0 41.55 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.886490 CCTGGCGACACTCTTTGCTT 60.886 55.000 0.00 0.00 35.60 3.91
94 95 1.291132 GAGATGTACTTGGGCGCTTC 58.709 55.000 7.64 0.02 0.00 3.86
283 284 3.384467 TCAGACTCCACATGCAATATCGA 59.616 43.478 0.00 0.00 0.00 3.59
363 367 1.746517 GACCACGACTGGGAACACT 59.253 57.895 0.00 0.00 42.74 3.55
641 645 2.176045 TGTTGACGATCTAGCCAAGGA 58.824 47.619 0.00 0.00 0.00 3.36
818 822 2.513753 CCAGCCACATGACCAAACTTA 58.486 47.619 0.00 0.00 0.00 2.24
826 830 6.070656 CCACATGACCAAACTTATATCCCAT 58.929 40.000 0.00 0.00 0.00 4.00
848 852 7.201767 CCCATTCTCTGTGGATTTTGAGTAATC 60.202 40.741 0.00 0.00 39.12 1.75
849 853 7.555554 CCATTCTCTGTGGATTTTGAGTAATCT 59.444 37.037 0.00 0.00 39.12 2.40
850 854 7.912056 TTCTCTGTGGATTTTGAGTAATCTG 57.088 36.000 0.00 0.00 35.37 2.90
851 855 7.009179 TCTCTGTGGATTTTGAGTAATCTGT 57.991 36.000 0.00 0.00 35.37 3.41
852 856 7.099764 TCTCTGTGGATTTTGAGTAATCTGTC 58.900 38.462 0.00 0.00 35.37 3.51
853 857 7.009179 TCTGTGGATTTTGAGTAATCTGTCT 57.991 36.000 0.00 0.00 35.37 3.41
854 858 7.453393 TCTGTGGATTTTGAGTAATCTGTCTT 58.547 34.615 0.00 0.00 35.37 3.01
855 859 7.939039 TCTGTGGATTTTGAGTAATCTGTCTTT 59.061 33.333 0.00 0.00 35.37 2.52
856 860 8.463930 TGTGGATTTTGAGTAATCTGTCTTTT 57.536 30.769 0.00 0.00 35.37 2.27
857 861 9.567776 TGTGGATTTTGAGTAATCTGTCTTTTA 57.432 29.630 0.00 0.00 35.37 1.52
859 863 9.231297 TGGATTTTGAGTAATCTGTCTTTTAGG 57.769 33.333 0.00 0.00 35.37 2.69
860 864 9.232473 GGATTTTGAGTAATCTGTCTTTTAGGT 57.768 33.333 0.00 0.00 35.37 3.08
872 876 8.792830 TCTGTCTTTTAGGTATTTGATGAAGG 57.207 34.615 0.00 0.00 0.00 3.46
873 877 7.336931 TCTGTCTTTTAGGTATTTGATGAAGGC 59.663 37.037 0.00 0.00 0.00 4.35
874 878 6.093495 TGTCTTTTAGGTATTTGATGAAGGCG 59.907 38.462 0.00 0.00 0.00 5.52
875 879 4.893424 TTTAGGTATTTGATGAAGGCGC 57.107 40.909 0.00 0.00 0.00 6.53
876 880 1.680338 AGGTATTTGATGAAGGCGCC 58.320 50.000 21.89 21.89 0.00 6.53
877 881 1.064758 AGGTATTTGATGAAGGCGCCA 60.065 47.619 31.54 8.70 0.00 5.69
878 882 1.065551 GGTATTTGATGAAGGCGCCAC 59.934 52.381 31.54 22.26 0.00 5.01
879 883 2.017049 GTATTTGATGAAGGCGCCACT 58.983 47.619 31.54 16.08 0.00 4.00
880 884 2.418368 ATTTGATGAAGGCGCCACTA 57.582 45.000 31.54 14.49 0.00 2.74
881 885 1.448985 TTTGATGAAGGCGCCACTAC 58.551 50.000 31.54 16.58 0.00 2.73
882 886 0.323302 TTGATGAAGGCGCCACTACA 59.677 50.000 31.54 21.65 0.00 2.74
984 991 1.218316 CGCTCTACTGAACCCCCAC 59.782 63.158 0.00 0.00 0.00 4.61
1085 1092 4.394712 CACTCCGCCTCCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
1101 1108 4.455137 CCCCACCTCCCCTCCCAT 62.455 72.222 0.00 0.00 0.00 4.00
1102 1109 2.774351 CCCACCTCCCCTCCCATC 60.774 72.222 0.00 0.00 0.00 3.51
1103 1110 2.774351 CCACCTCCCCTCCCATCC 60.774 72.222 0.00 0.00 0.00 3.51
1104 1111 3.164269 CACCTCCCCTCCCATCCG 61.164 72.222 0.00 0.00 0.00 4.18
1331 1361 4.214327 CTCTTCCCCGCGCTCTCC 62.214 72.222 5.56 0.00 0.00 3.71
1355 1386 3.057526 CCGGGACTGATGAAAAAGTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
1358 1400 3.565516 GACTGATGAAAAAGTTTCCGCC 58.434 45.455 0.00 0.00 0.00 6.13
1362 1404 4.367450 TGATGAAAAAGTTTCCGCCTTTG 58.633 39.130 0.00 0.00 32.66 2.77
1364 1406 3.776340 TGAAAAAGTTTCCGCCTTTGTC 58.224 40.909 0.00 0.00 36.90 3.18
1365 1407 3.445805 TGAAAAAGTTTCCGCCTTTGTCT 59.554 39.130 0.00 0.00 37.16 3.41
1582 2312 9.462606 TGAGAGTTCAGTCACAATAGATAGTAA 57.537 33.333 0.00 0.00 0.00 2.24
1583 2313 9.944663 GAGAGTTCAGTCACAATAGATAGTAAG 57.055 37.037 0.00 0.00 0.00 2.34
1584 2314 9.469097 AGAGTTCAGTCACAATAGATAGTAAGT 57.531 33.333 0.00 0.00 0.00 2.24
1591 2321 9.476928 AGTCACAATAGATAGTAAGTACTTGGT 57.523 33.333 18.56 7.51 37.73 3.67
1609 2378 4.471904 TGGTCAGTCAGTATGTTCCATC 57.528 45.455 0.00 0.00 37.40 3.51
1619 2388 6.434340 GTCAGTATGTTCCATCTTTCCCTTTT 59.566 38.462 0.00 0.00 37.40 2.27
1673 2448 2.808244 CATTGCCTTTGTTGTGAACGT 58.192 42.857 0.00 0.00 0.00 3.99
1682 2457 1.064803 TGTTGTGAACGTTGACATGGC 59.935 47.619 21.13 14.25 0.00 4.40
1702 2477 4.458989 TGGCAAATTCAGTTATGTCCTGTC 59.541 41.667 0.00 0.00 0.00 3.51
1935 3782 1.005332 TCTGCAGAGGCTAGAGTCACT 59.995 52.381 13.74 0.00 41.91 3.41
2130 3977 7.820648 ACTTATACATGAAAACTGCTGAAAGG 58.179 34.615 0.00 0.00 0.00 3.11
2214 4061 5.988310 TGGAAATCATCAACAAGCATCTT 57.012 34.783 0.00 0.00 0.00 2.40
2227 4074 6.276832 ACAAGCATCTTGTATGCATTTCTT 57.723 33.333 3.54 0.00 46.77 2.52
2228 4075 6.327934 ACAAGCATCTTGTATGCATTTCTTC 58.672 36.000 3.54 0.00 46.77 2.87
2245 4096 1.884579 CTTCCTGCTGTGCTTTGTCAT 59.115 47.619 0.00 0.00 0.00 3.06
2289 4148 5.252164 AGTTAGCCTTATGACACCCCTTTTA 59.748 40.000 0.00 0.00 0.00 1.52
2440 4299 4.877323 TTTACGCACACACACAACATAA 57.123 36.364 0.00 0.00 0.00 1.90
2457 4316 7.530525 CACAACATAAAGTTCGTGACAGTTATG 59.469 37.037 16.68 16.68 40.62 1.90
2480 4340 2.290577 GCTCCTGAATTCTGGGTTGACT 60.291 50.000 25.94 0.00 35.87 3.41
2557 4417 6.074676 GCACTGTTCTGTTTGCTTTTCTTATG 60.075 38.462 0.00 0.00 32.00 1.90
2677 4537 8.717717 TCACAGAGGACATAAATTAGGATCATT 58.282 33.333 0.00 0.00 0.00 2.57
2721 4581 7.931275 AGGCTTATTAGTTATGCTAAAGTTGC 58.069 34.615 0.00 0.00 42.35 4.17
2746 4876 3.290948 TGTTGAGCCCACAAACTTACT 57.709 42.857 0.00 0.00 0.00 2.24
2814 5237 0.380378 TCACTTTGGCAAACGTCAGC 59.620 50.000 8.93 3.77 0.00 4.26
2859 5282 3.069872 TGTCGGTTTAACCTCAGTTAGCA 59.930 43.478 12.66 0.00 39.58 3.49
2883 5306 2.503356 CACCCTTTCTAGCTCTGGTGAT 59.497 50.000 13.07 0.00 44.69 3.06
2928 5353 7.984422 TCAGTGTTTCATTATGTGAATCTGT 57.016 32.000 14.52 1.63 45.77 3.41
2929 5354 8.394971 TCAGTGTTTCATTATGTGAATCTGTT 57.605 30.769 14.52 0.00 45.77 3.16
2972 5398 0.193321 ATCCTTTGGCCCCAAACCTT 59.807 50.000 8.35 0.00 40.51 3.50
2996 5451 4.092968 GTGTAGCCAACTCTAAAATGTCCG 59.907 45.833 0.00 0.00 0.00 4.79
3012 5467 4.713824 TGTCCGTCTTCTACATACTTGG 57.286 45.455 0.00 0.00 0.00 3.61
3116 5678 7.800155 AAGAGGACAGAAAAGAAAGAGAAAG 57.200 36.000 0.00 0.00 0.00 2.62
3135 5701 3.036429 GCCTGGCCTGTGTAGGGAG 62.036 68.421 7.66 0.00 44.75 4.30
3144 5710 0.904865 TGTGTAGGGAGCAGGACCAG 60.905 60.000 0.00 0.00 0.00 4.00
3172 5752 2.394930 TCGCCTTGCAGCTTATAACA 57.605 45.000 0.00 0.00 0.00 2.41
3175 5755 3.312421 TCGCCTTGCAGCTTATAACATTC 59.688 43.478 0.00 0.00 0.00 2.67
3176 5756 3.621794 GCCTTGCAGCTTATAACATTCG 58.378 45.455 0.00 0.00 0.00 3.34
3283 5864 5.594725 AGGTACTAGGCATCGACCATATATG 59.405 44.000 5.68 5.68 36.02 1.78
3291 5872 3.044235 TCGACCATATATGCTGGCAAG 57.956 47.619 7.24 0.00 37.27 4.01
3309 5890 0.548682 AGTCTCCCCTCATGGCAGTT 60.549 55.000 0.00 0.00 0.00 3.16
3310 5891 0.393537 GTCTCCCCTCATGGCAGTTG 60.394 60.000 0.00 0.00 0.00 3.16
3328 5912 3.962530 GACCCCACCCCCTCCATCA 62.963 68.421 0.00 0.00 0.00 3.07
3336 5920 0.686441 CCCCCTCCATCACACTCGTA 60.686 60.000 0.00 0.00 0.00 3.43
3353 5937 1.275291 CGTACCTTTTCCTCCAGCAGA 59.725 52.381 0.00 0.00 0.00 4.26
3354 5938 2.093447 CGTACCTTTTCCTCCAGCAGAT 60.093 50.000 0.00 0.00 0.00 2.90
3397 5982 2.722094 TCTGCTCCACTGTTGTTTTGT 58.278 42.857 0.00 0.00 0.00 2.83
3408 5993 2.065906 TTGTTTTGTCGAAGGGCGGC 62.066 55.000 0.00 0.00 46.88 6.53
3428 6013 0.957888 GTCCTGCTCCTTTGCCTGTC 60.958 60.000 0.00 0.00 0.00 3.51
3443 6029 1.554822 CCTGTCTTTCCCCTACTCCCA 60.555 57.143 0.00 0.00 0.00 4.37
3451 6037 1.080354 CCCTACTCCCACTCCACCA 59.920 63.158 0.00 0.00 0.00 4.17
3453 6039 1.265454 CCTACTCCCACTCCACCACC 61.265 65.000 0.00 0.00 0.00 4.61
3520 6106 2.296831 CTGCTCATCAGTCTCACTGG 57.703 55.000 3.86 0.00 45.94 4.00
3521 6107 1.549620 CTGCTCATCAGTCTCACTGGT 59.450 52.381 3.86 0.00 45.94 4.00
3522 6108 2.757314 CTGCTCATCAGTCTCACTGGTA 59.243 50.000 3.86 0.00 45.94 3.25
3523 6109 2.493675 TGCTCATCAGTCTCACTGGTAC 59.506 50.000 3.86 0.00 45.94 3.34
3524 6110 2.493675 GCTCATCAGTCTCACTGGTACA 59.506 50.000 3.86 0.00 45.94 2.90
3805 6430 6.500684 TCAGTTACATGCTGATTCCTTTTC 57.499 37.500 0.00 0.00 37.98 2.29
3849 6518 6.434965 TCACATGGTGATTCATCTTGTTGATT 59.565 34.615 14.03 0.00 37.67 2.57
4067 6757 6.594788 ACATTGCCATGTTCTAACATCTTT 57.405 33.333 5.36 0.00 46.10 2.52
4075 6765 7.550906 GCCATGTTCTAACATCTTTCTTCTACT 59.449 37.037 5.36 0.00 46.10 2.57
4165 6858 2.755103 CCCCTTCAAGCAGTTTGATACC 59.245 50.000 0.00 0.00 44.90 2.73
4196 6889 4.263905 ACATGGAAAAGGATGAGTTGGCTA 60.264 41.667 0.00 0.00 0.00 3.93
4214 6907 5.519808 TGGCTACTGAGATAGAAGAGGAAA 58.480 41.667 0.00 0.00 0.00 3.13
4233 6934 6.534634 AGGAAAAAGTAAGCACAGTACTGAT 58.465 36.000 29.30 13.81 32.10 2.90
4394 7097 5.823045 GGACGATATGGAAGATTTTGAAGGT 59.177 40.000 0.00 0.00 0.00 3.50
4511 7231 8.815141 TTTTTCTGTGTTCATTGGATAATGTG 57.185 30.769 0.00 0.00 43.33 3.21
4557 7278 6.478512 TTATGGCCCTTGAAAATTCATACC 57.521 37.500 0.00 0.00 37.00 2.73
4644 7496 2.619074 GCCAACTGCCAATCTAACCTCT 60.619 50.000 0.00 0.00 0.00 3.69
4645 7497 3.012518 CCAACTGCCAATCTAACCTCTG 58.987 50.000 0.00 0.00 0.00 3.35
4721 7573 0.390492 AGCAACAAAGAAGCCCAAGC 59.610 50.000 0.00 0.00 40.32 4.01
4874 7726 8.689061 AGATAAAATCAAGCACATCTTATTGCA 58.311 29.630 0.00 0.00 41.48 4.08
4908 7885 2.810439 TTGCTGCCCAACACATAAAC 57.190 45.000 0.00 0.00 0.00 2.01
4909 7886 1.697284 TGCTGCCCAACACATAAACA 58.303 45.000 0.00 0.00 0.00 2.83
4910 7887 2.246469 TGCTGCCCAACACATAAACAT 58.754 42.857 0.00 0.00 0.00 2.71
4911 7888 3.425659 TGCTGCCCAACACATAAACATA 58.574 40.909 0.00 0.00 0.00 2.29
4912 7889 3.443329 TGCTGCCCAACACATAAACATAG 59.557 43.478 0.00 0.00 0.00 2.23
4914 7891 4.339247 GCTGCCCAACACATAAACATAGAT 59.661 41.667 0.00 0.00 0.00 1.98
4915 7892 5.530915 GCTGCCCAACACATAAACATAGATA 59.469 40.000 0.00 0.00 0.00 1.98
4916 7893 6.039270 GCTGCCCAACACATAAACATAGATAA 59.961 38.462 0.00 0.00 0.00 1.75
4917 7894 7.416213 GCTGCCCAACACATAAACATAGATAAA 60.416 37.037 0.00 0.00 0.00 1.40
4990 7975 7.443302 TTGATTATCTCTTCATGGGAGAAGT 57.557 36.000 18.23 9.36 44.18 3.01
5015 8000 4.603989 TTTCCAAGAGCATGCATTTTGA 57.396 36.364 21.98 11.63 0.00 2.69
5040 8025 9.983804 GAGGTGTAATATTAGGTTTTCTTTTCG 57.016 33.333 0.00 0.00 0.00 3.46
5181 8166 1.075542 GACGCGAATGTGATTCACCA 58.924 50.000 15.93 3.23 39.22 4.17
5209 8197 3.458189 GCTTCAGTAATATGCTCGGTGT 58.542 45.455 0.00 0.00 0.00 4.16
5292 8280 2.029828 TGTTGGTTATTTTGCGGCGAAT 60.030 40.909 12.98 4.01 0.00 3.34
5299 8287 3.791973 ATTTTGCGGCGAATATGGAAA 57.208 38.095 12.98 0.00 0.00 3.13
5300 8288 2.553079 TTTGCGGCGAATATGGAAAC 57.447 45.000 12.98 0.00 0.00 2.78
5316 8304 3.141398 GGAAACTGACATGAGCTGTGAA 58.859 45.455 0.00 0.00 38.54 3.18
5325 8313 5.640783 TGACATGAGCTGTGAATTAGAACAG 59.359 40.000 0.00 9.86 45.37 3.16
5336 8324 8.138365 TGTGAATTAGAACAGTGTTGTACTTC 57.862 34.615 24.61 24.61 37.60 3.01
5347 8335 2.863740 TGTTGTACTTCGAGCAGTGTTG 59.136 45.455 0.00 0.00 0.00 3.33
5394 8382 2.551270 GAAGCTGCGGTGAACGTG 59.449 61.111 0.00 0.00 46.52 4.49
5423 8412 7.887381 TGTTAATGTTAAGTTGTGTAATGGGG 58.113 34.615 0.00 0.00 0.00 4.96
5424 8413 5.400066 AATGTTAAGTTGTGTAATGGGGC 57.600 39.130 0.00 0.00 0.00 5.80
5445 8434 5.635700 GGGCGCTTTTGAATTTACAATTACA 59.364 36.000 7.64 0.00 0.00 2.41
5468 8457 1.351350 GGCAGGACAGGAAACTACCTT 59.649 52.381 0.00 0.00 42.13 3.50
5480 8469 7.070322 ACAGGAAACTACCTTACTCAGTACAAA 59.930 37.037 0.00 0.00 40.21 2.83
5524 8521 1.026182 TCAGCTGCGCAGGGTAAATG 61.026 55.000 36.47 12.15 0.00 2.32
5569 8566 8.909708 TCTTTTTGGTTATAAATCATGAAGCG 57.090 30.769 0.00 0.00 0.00 4.68
5609 8606 7.784470 TGTTAACACCCAAAATTAAGCCTAT 57.216 32.000 3.59 0.00 0.00 2.57
5617 10116 7.759433 CACCCAAAATTAAGCCTATAACAGTTG 59.241 37.037 0.00 0.00 0.00 3.16
5651 10150 0.179108 GCAGAGTAGGCTTGTACCGG 60.179 60.000 0.00 0.00 33.69 5.28
5686 10185 2.902705 TCAGAGTAACAACCGCAACT 57.097 45.000 0.00 0.00 0.00 3.16
5707 10207 0.107508 TGCTACCATGCTTCTGCCTC 60.108 55.000 0.00 0.00 38.71 4.70
5723 10223 2.562738 TGCCTCGAGAGAAGAATGTCAA 59.437 45.455 15.71 0.00 41.32 3.18
5724 10224 3.006859 TGCCTCGAGAGAAGAATGTCAAA 59.993 43.478 15.71 0.00 41.32 2.69
5727 10227 5.123027 GCCTCGAGAGAAGAATGTCAAAATT 59.877 40.000 15.71 0.00 41.32 1.82
5730 10230 7.095060 CCTCGAGAGAAGAATGTCAAAATTTGA 60.095 37.037 15.71 4.03 41.32 2.69
5731 10231 7.800767 TCGAGAGAAGAATGTCAAAATTTGAG 58.199 34.615 8.88 0.00 37.53 3.02
5732 10232 7.657354 TCGAGAGAAGAATGTCAAAATTTGAGA 59.343 33.333 8.88 8.42 37.53 3.27
5733 10233 8.285394 CGAGAGAAGAATGTCAAAATTTGAGAA 58.715 33.333 8.88 1.14 41.01 2.87
5734 10234 9.956720 GAGAGAAGAATGTCAAAATTTGAGAAA 57.043 29.630 8.88 0.00 41.01 2.52
5744 10244 8.412456 TGTCAAAATTTGAGAAATAAGAGTGCA 58.588 29.630 8.88 0.00 41.01 4.57
5745 10245 9.248291 GTCAAAATTTGAGAAATAAGAGTGCAA 57.752 29.630 8.88 0.00 41.01 4.08
5746 10246 9.985730 TCAAAATTTGAGAAATAAGAGTGCAAT 57.014 25.926 4.03 0.00 34.08 3.56
5764 10264 4.112793 CAATTTTTGCGCGTCAATGAAA 57.887 36.364 8.43 11.02 34.12 2.69
5765 10265 4.700332 CAATTTTTGCGCGTCAATGAAAT 58.300 34.783 8.43 12.65 34.12 2.17
5766 10266 5.841313 CAATTTTTGCGCGTCAATGAAATA 58.159 33.333 8.43 0.00 34.12 1.40
5768 10268 3.822594 TTTGCGCGTCAATGAAATAGT 57.177 38.095 8.43 0.00 34.12 2.12
5769 10269 3.822594 TTGCGCGTCAATGAAATAGTT 57.177 38.095 8.43 0.00 0.00 2.24
5771 10271 3.742786 TGCGCGTCAATGAAATAGTTTC 58.257 40.909 8.43 0.00 40.08 2.78
5781 10281 4.700268 TGAAATAGTTTCACATGCGCAT 57.300 36.364 19.28 19.28 44.21 4.73
5782 10282 4.413969 TGAAATAGTTTCACATGCGCATG 58.586 39.130 41.02 41.02 44.21 4.06
5783 10283 4.155644 TGAAATAGTTTCACATGCGCATGA 59.844 37.500 46.90 30.32 44.21 3.07
5786 10286 6.375945 AATAGTTTCACATGCGCATGATAA 57.624 33.333 46.90 35.71 41.20 1.75
5787 10287 4.019919 AGTTTCACATGCGCATGATAAC 57.980 40.909 46.90 38.77 41.20 1.89
5788 10288 3.439825 AGTTTCACATGCGCATGATAACA 59.560 39.130 46.90 27.16 41.20 2.41
5789 10289 3.678915 TTCACATGCGCATGATAACAG 57.321 42.857 46.90 29.30 41.20 3.16
5790 10290 2.903798 TCACATGCGCATGATAACAGA 58.096 42.857 46.90 30.65 41.20 3.41
5791 10291 2.867975 TCACATGCGCATGATAACAGAG 59.132 45.455 46.90 26.75 41.20 3.35
5792 10292 1.600957 ACATGCGCATGATAACAGAGC 59.399 47.619 46.90 0.00 41.20 4.09
5797 10340 3.129113 TGCGCATGATAACAGAGCAAAAT 59.871 39.130 5.66 0.00 33.41 1.82
5811 10354 8.807667 ACAGAGCAAAATTTGAGAAATAACAG 57.192 30.769 10.26 0.00 0.00 3.16
5812 10355 8.632679 ACAGAGCAAAATTTGAGAAATAACAGA 58.367 29.630 10.26 0.00 0.00 3.41
5813 10356 9.125906 CAGAGCAAAATTTGAGAAATAACAGAG 57.874 33.333 10.26 0.00 0.00 3.35
5814 10357 7.811713 AGAGCAAAATTTGAGAAATAACAGAGC 59.188 33.333 10.26 0.00 0.00 4.09
5816 10359 7.927629 AGCAAAATTTGAGAAATAACAGAGCAA 59.072 29.630 10.26 0.00 0.00 3.91
5817 10360 8.219105 GCAAAATTTGAGAAATAACAGAGCAAG 58.781 33.333 10.26 0.00 0.00 4.01
5818 10361 7.880059 AAATTTGAGAAATAACAGAGCAAGC 57.120 32.000 0.00 0.00 0.00 4.01
5829 10372 1.669115 GAGCAAGCTGGCGAGTTCA 60.669 57.895 7.63 0.00 39.27 3.18
5861 10634 6.588756 CAGACATTGCAGAATAGCACATTTTT 59.411 34.615 0.00 0.00 45.61 1.94
5867 10640 7.354025 TGCAGAATAGCACATTTTTGAAATG 57.646 32.000 10.86 10.86 40.11 2.32
5896 10669 2.668457 CGATCAAACTGTCTCGGAAAGG 59.332 50.000 0.00 0.00 0.00 3.11
5935 10708 3.904800 TGTAGAAGGAAATCGCCATGA 57.095 42.857 0.00 0.00 0.00 3.07
5948 10721 2.816672 TCGCCATGAAACAGCACAAATA 59.183 40.909 0.00 0.00 0.00 1.40
6188 10961 1.339055 TGGGAAAGACGCTTGAGATGG 60.339 52.381 0.00 0.00 0.00 3.51
6238 11011 3.629796 GCCTTTTAATCCCTCCCCATCAA 60.630 47.826 0.00 0.00 0.00 2.57
6271 11044 5.163195 CCTTAATTAGCCAGCTTTCTCCCTA 60.163 44.000 0.00 0.00 0.00 3.53
6276 11049 1.270041 GCCAGCTTTCTCCCTATCTCG 60.270 57.143 0.00 0.00 0.00 4.04
6277 11050 2.311463 CCAGCTTTCTCCCTATCTCGA 58.689 52.381 0.00 0.00 0.00 4.04
6278 11051 2.035321 CCAGCTTTCTCCCTATCTCGAC 59.965 54.545 0.00 0.00 0.00 4.20
6279 11052 2.955660 CAGCTTTCTCCCTATCTCGACT 59.044 50.000 0.00 0.00 0.00 4.18
6280 11053 3.004315 CAGCTTTCTCCCTATCTCGACTC 59.996 52.174 0.00 0.00 0.00 3.36
6281 11054 2.031508 GCTTTCTCCCTATCTCGACTCG 60.032 54.545 0.00 0.00 0.00 4.18
6282 11055 3.468770 CTTTCTCCCTATCTCGACTCGA 58.531 50.000 0.29 0.29 0.00 4.04
6298 11071 2.827652 CTCGAGAGGGTTTCCTATTGC 58.172 52.381 6.58 0.00 45.05 3.56
6299 11072 2.168521 CTCGAGAGGGTTTCCTATTGCA 59.831 50.000 6.58 0.00 45.05 4.08
6300 11073 2.168521 TCGAGAGGGTTTCCTATTGCAG 59.831 50.000 0.00 0.00 45.05 4.41
6301 11074 2.293170 GAGAGGGTTTCCTATTGCAGC 58.707 52.381 0.00 0.00 45.05 5.25
6302 11075 1.064389 AGAGGGTTTCCTATTGCAGCC 60.064 52.381 0.00 0.00 45.05 4.85
6303 11076 0.394352 AGGGTTTCCTATTGCAGCCG 60.394 55.000 0.00 0.00 42.75 5.52
6304 11077 1.433471 GGTTTCCTATTGCAGCCGC 59.567 57.895 0.00 0.00 39.24 6.53
6305 11078 1.433471 GTTTCCTATTGCAGCCGCC 59.567 57.895 0.00 0.00 37.32 6.13
6306 11079 2.112198 TTTCCTATTGCAGCCGCCG 61.112 57.895 0.00 0.00 37.32 6.46
6307 11080 2.813226 TTTCCTATTGCAGCCGCCGT 62.813 55.000 0.00 0.00 37.32 5.68
6308 11081 3.272334 CCTATTGCAGCCGCCGTC 61.272 66.667 0.00 0.00 37.32 4.79
6309 11082 3.272334 CTATTGCAGCCGCCGTCC 61.272 66.667 0.00 0.00 37.32 4.79
6310 11083 4.849310 TATTGCAGCCGCCGTCCC 62.849 66.667 0.00 0.00 37.32 4.46
6328 11101 4.473520 CTCGCCTCCGGTTGCCAT 62.474 66.667 0.00 0.00 34.56 4.40
6329 11102 4.467084 TCGCCTCCGGTTGCCATC 62.467 66.667 0.00 0.00 34.56 3.51
6330 11103 4.473520 CGCCTCCGGTTGCCATCT 62.474 66.667 0.00 0.00 0.00 2.90
6331 11104 2.044946 GCCTCCGGTTGCCATCTT 60.045 61.111 0.00 0.00 0.00 2.40
6332 11105 2.409870 GCCTCCGGTTGCCATCTTG 61.410 63.158 0.00 0.00 0.00 3.02
6333 11106 1.750399 CCTCCGGTTGCCATCTTGG 60.750 63.158 0.00 0.00 41.55 3.61
6343 11116 2.772739 CCATCTTGGCGTTGAGAGG 58.227 57.895 0.00 0.00 0.00 3.69
6344 11117 0.036010 CCATCTTGGCGTTGAGAGGT 60.036 55.000 0.00 0.00 0.00 3.85
6345 11118 1.081892 CATCTTGGCGTTGAGAGGTG 58.918 55.000 0.00 0.00 0.00 4.00
6346 11119 0.036010 ATCTTGGCGTTGAGAGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
6347 11120 1.672356 CTTGGCGTTGAGAGGTGGG 60.672 63.158 0.00 0.00 0.00 4.61
6348 11121 3.190738 TTGGCGTTGAGAGGTGGGG 62.191 63.158 0.00 0.00 0.00 4.96
6349 11122 4.410400 GGCGTTGAGAGGTGGGGG 62.410 72.222 0.00 0.00 0.00 5.40
6369 11142 4.732672 GGGACCTCGTGTATTTAAGAGT 57.267 45.455 0.00 0.00 0.00 3.24
6370 11143 5.082251 GGGACCTCGTGTATTTAAGAGTT 57.918 43.478 0.00 0.00 0.00 3.01
6371 11144 5.107824 GGGACCTCGTGTATTTAAGAGTTC 58.892 45.833 0.00 0.00 0.00 3.01
6372 11145 5.105432 GGGACCTCGTGTATTTAAGAGTTCT 60.105 44.000 0.00 0.00 0.00 3.01
6373 11146 6.096001 GGGACCTCGTGTATTTAAGAGTTCTA 59.904 42.308 0.00 0.00 0.00 2.10
6374 11147 7.201893 GGGACCTCGTGTATTTAAGAGTTCTAT 60.202 40.741 0.00 0.00 0.00 1.98
6375 11148 7.648510 GGACCTCGTGTATTTAAGAGTTCTATG 59.351 40.741 0.00 0.00 0.00 2.23
6376 11149 8.064336 ACCTCGTGTATTTAAGAGTTCTATGT 57.936 34.615 0.00 0.00 0.00 2.29
6377 11150 8.529476 ACCTCGTGTATTTAAGAGTTCTATGTT 58.471 33.333 0.00 0.00 0.00 2.71
6378 11151 9.021863 CCTCGTGTATTTAAGAGTTCTATGTTC 57.978 37.037 0.00 0.00 0.00 3.18
6379 11152 9.790389 CTCGTGTATTTAAGAGTTCTATGTTCT 57.210 33.333 0.00 0.00 0.00 3.01
6386 11159 9.706691 ATTTAAGAGTTCTATGTTCTTCGTCAA 57.293 29.630 0.00 0.00 33.51 3.18
6387 11160 8.516811 TTAAGAGTTCTATGTTCTTCGTCAAC 57.483 34.615 0.00 0.00 33.51 3.18
6388 11161 6.085555 AGAGTTCTATGTTCTTCGTCAACA 57.914 37.500 0.00 0.00 38.12 3.33
6389 11162 6.692486 AGAGTTCTATGTTCTTCGTCAACAT 58.308 36.000 11.99 11.99 44.78 2.71
6390 11163 6.809196 AGAGTTCTATGTTCTTCGTCAACATC 59.191 38.462 11.05 1.02 42.33 3.06
6391 11164 6.692486 AGTTCTATGTTCTTCGTCAACATCT 58.308 36.000 11.05 2.95 42.33 2.90
6392 11165 7.827701 AGTTCTATGTTCTTCGTCAACATCTA 58.172 34.615 11.05 1.90 42.33 1.98
6393 11166 7.971168 AGTTCTATGTTCTTCGTCAACATCTAG 59.029 37.037 11.05 6.52 42.33 2.43
6394 11167 7.392494 TCTATGTTCTTCGTCAACATCTAGT 57.608 36.000 11.05 0.00 42.33 2.57
6395 11168 7.251281 TCTATGTTCTTCGTCAACATCTAGTG 58.749 38.462 11.05 0.00 42.33 2.74
6396 11169 5.447624 TGTTCTTCGTCAACATCTAGTGA 57.552 39.130 0.00 0.00 0.00 3.41
6397 11170 6.025749 TGTTCTTCGTCAACATCTAGTGAT 57.974 37.500 0.00 0.00 0.00 3.06
6398 11171 6.093404 TGTTCTTCGTCAACATCTAGTGATC 58.907 40.000 0.00 0.00 0.00 2.92
6399 11172 5.897377 TCTTCGTCAACATCTAGTGATCA 57.103 39.130 0.00 0.00 0.00 2.92
6400 11173 6.456795 TCTTCGTCAACATCTAGTGATCAT 57.543 37.500 0.00 0.00 0.00 2.45
6401 11174 6.499172 TCTTCGTCAACATCTAGTGATCATC 58.501 40.000 0.00 0.00 0.00 2.92
6402 11175 4.848757 TCGTCAACATCTAGTGATCATCG 58.151 43.478 0.00 0.00 0.00 3.84
6403 11176 3.423536 CGTCAACATCTAGTGATCATCGC 59.576 47.826 0.00 0.00 0.00 4.58
6404 11177 4.363138 GTCAACATCTAGTGATCATCGCA 58.637 43.478 0.00 0.00 0.00 5.10
6405 11178 4.987285 GTCAACATCTAGTGATCATCGCAT 59.013 41.667 0.00 0.00 0.00 4.73
6406 11179 5.464722 GTCAACATCTAGTGATCATCGCATT 59.535 40.000 0.00 0.00 0.00 3.56
6407 11180 6.018425 GTCAACATCTAGTGATCATCGCATTT 60.018 38.462 0.00 0.00 0.00 2.32
6408 11181 7.169813 GTCAACATCTAGTGATCATCGCATTTA 59.830 37.037 0.00 0.00 0.00 1.40
6409 11182 7.874528 TCAACATCTAGTGATCATCGCATTTAT 59.125 33.333 0.00 0.00 0.00 1.40
6410 11183 7.592439 ACATCTAGTGATCATCGCATTTATG 57.408 36.000 0.00 1.80 0.00 1.90
6411 11184 7.381323 ACATCTAGTGATCATCGCATTTATGA 58.619 34.615 0.00 0.00 37.73 2.15
6412 11185 7.544915 ACATCTAGTGATCATCGCATTTATGAG 59.455 37.037 0.00 0.00 36.82 2.90
6413 11186 7.219484 TCTAGTGATCATCGCATTTATGAGA 57.781 36.000 0.00 0.00 40.76 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.676093 ACATCTCGAGACAGTACACTCA 58.324 45.455 19.30 0.00 33.86 3.41
94 95 0.457851 CAGCCTAACTCCTCGTCCAG 59.542 60.000 0.00 0.00 0.00 3.86
363 367 2.829003 CTCGGTCTCGCTGCCCTA 60.829 66.667 0.00 0.00 36.13 3.53
397 401 4.023450 CGCATCTACATGGATCTTTGCATT 60.023 41.667 0.00 0.00 30.50 3.56
641 645 2.381911 CACCATATGCTCCTTGGCTTT 58.618 47.619 0.00 0.00 33.66 3.51
734 738 1.620822 AGCTAACTTGTGGGCTTTGG 58.379 50.000 0.00 0.00 0.00 3.28
736 740 6.405842 GCATATTTAGCTAACTTGTGGGCTTT 60.406 38.462 5.45 0.00 36.40 3.51
818 822 6.914665 TCAAAATCCACAGAGAATGGGATAT 58.085 36.000 0.00 0.00 37.75 1.63
826 830 7.453393 ACAGATTACTCAAAATCCACAGAGAA 58.547 34.615 0.00 0.00 36.68 2.87
848 852 7.475840 GCCTTCATCAAATACCTAAAAGACAG 58.524 38.462 0.00 0.00 0.00 3.51
849 853 6.093495 CGCCTTCATCAAATACCTAAAAGACA 59.907 38.462 0.00 0.00 0.00 3.41
850 854 6.487103 CGCCTTCATCAAATACCTAAAAGAC 58.513 40.000 0.00 0.00 0.00 3.01
851 855 5.065988 GCGCCTTCATCAAATACCTAAAAGA 59.934 40.000 0.00 0.00 0.00 2.52
852 856 5.273944 GCGCCTTCATCAAATACCTAAAAG 58.726 41.667 0.00 0.00 0.00 2.27
853 857 4.097286 GGCGCCTTCATCAAATACCTAAAA 59.903 41.667 22.15 0.00 0.00 1.52
854 858 3.630312 GGCGCCTTCATCAAATACCTAAA 59.370 43.478 22.15 0.00 0.00 1.85
855 859 3.211045 GGCGCCTTCATCAAATACCTAA 58.789 45.455 22.15 0.00 0.00 2.69
856 860 2.171659 TGGCGCCTTCATCAAATACCTA 59.828 45.455 29.70 0.00 0.00 3.08
857 861 1.064758 TGGCGCCTTCATCAAATACCT 60.065 47.619 29.70 0.00 0.00 3.08
858 862 1.065551 GTGGCGCCTTCATCAAATACC 59.934 52.381 29.70 0.00 0.00 2.73
859 863 2.017049 AGTGGCGCCTTCATCAAATAC 58.983 47.619 29.70 13.21 0.00 1.89
860 864 2.418368 AGTGGCGCCTTCATCAAATA 57.582 45.000 29.70 0.00 0.00 1.40
861 865 2.017049 GTAGTGGCGCCTTCATCAAAT 58.983 47.619 29.70 6.96 0.00 2.32
862 866 1.271108 TGTAGTGGCGCCTTCATCAAA 60.271 47.619 29.70 0.07 0.00 2.69
863 867 0.323302 TGTAGTGGCGCCTTCATCAA 59.677 50.000 29.70 1.01 0.00 2.57
864 868 0.323302 TTGTAGTGGCGCCTTCATCA 59.677 50.000 29.70 16.79 0.00 3.07
865 869 1.448985 TTTGTAGTGGCGCCTTCATC 58.551 50.000 29.70 14.37 0.00 2.92
866 870 2.128771 ATTTGTAGTGGCGCCTTCAT 57.871 45.000 29.70 13.07 0.00 2.57
867 871 2.772077 TATTTGTAGTGGCGCCTTCA 57.228 45.000 29.70 17.50 0.00 3.02
868 872 3.730963 GCTTTATTTGTAGTGGCGCCTTC 60.731 47.826 29.70 20.25 0.00 3.46
869 873 2.163613 GCTTTATTTGTAGTGGCGCCTT 59.836 45.455 29.70 18.41 0.00 4.35
870 874 1.743394 GCTTTATTTGTAGTGGCGCCT 59.257 47.619 29.70 11.31 0.00 5.52
871 875 1.202256 GGCTTTATTTGTAGTGGCGCC 60.202 52.381 22.73 22.73 0.00 6.53
872 876 1.202256 GGGCTTTATTTGTAGTGGCGC 60.202 52.381 0.00 0.00 0.00 6.53
873 877 2.088423 TGGGCTTTATTTGTAGTGGCG 58.912 47.619 0.00 0.00 0.00 5.69
874 878 2.159240 GCTGGGCTTTATTTGTAGTGGC 60.159 50.000 0.00 0.00 0.00 5.01
875 879 3.088532 TGCTGGGCTTTATTTGTAGTGG 58.911 45.455 0.00 0.00 0.00 4.00
876 880 4.009675 TCTGCTGGGCTTTATTTGTAGTG 58.990 43.478 0.00 0.00 0.00 2.74
877 881 4.301072 TCTGCTGGGCTTTATTTGTAGT 57.699 40.909 0.00 0.00 0.00 2.73
878 882 4.142381 GGTTCTGCTGGGCTTTATTTGTAG 60.142 45.833 0.00 0.00 0.00 2.74
879 883 3.761752 GGTTCTGCTGGGCTTTATTTGTA 59.238 43.478 0.00 0.00 0.00 2.41
880 884 2.562738 GGTTCTGCTGGGCTTTATTTGT 59.437 45.455 0.00 0.00 0.00 2.83
881 885 2.415893 CGGTTCTGCTGGGCTTTATTTG 60.416 50.000 0.00 0.00 0.00 2.32
882 886 1.818674 CGGTTCTGCTGGGCTTTATTT 59.181 47.619 0.00 0.00 0.00 1.40
1080 1087 4.677151 GAGGGGAGGTGGGGTGGT 62.677 72.222 0.00 0.00 0.00 4.16
1085 1092 2.774351 GATGGGAGGGGAGGTGGG 60.774 72.222 0.00 0.00 0.00 4.61
1331 1361 1.271926 ACTTTTTCATCAGTCCCGGGG 60.272 52.381 23.50 6.77 0.00 5.73
1355 1386 2.169832 TCCTGAGAAAGACAAAGGCG 57.830 50.000 0.00 0.00 0.00 5.52
1358 1400 4.862018 GTCTCGATCCTGAGAAAGACAAAG 59.138 45.833 2.30 0.00 46.02 2.77
1362 1404 2.223386 CCGTCTCGATCCTGAGAAAGAC 60.223 54.545 2.30 0.00 46.02 3.01
1364 1406 1.066303 CCCGTCTCGATCCTGAGAAAG 59.934 57.143 2.30 1.22 46.02 2.62
1365 1407 1.103803 CCCGTCTCGATCCTGAGAAA 58.896 55.000 2.30 0.00 46.02 2.52
1582 2312 5.047235 GGAACATACTGACTGACCAAGTACT 60.047 44.000 0.00 0.00 40.07 2.73
1583 2313 5.169295 GGAACATACTGACTGACCAAGTAC 58.831 45.833 0.00 0.00 40.07 2.73
1584 2314 4.836175 TGGAACATACTGACTGACCAAGTA 59.164 41.667 0.00 0.00 40.07 2.24
1585 2315 3.646162 TGGAACATACTGACTGACCAAGT 59.354 43.478 0.00 0.00 43.85 3.16
1609 2378 3.059166 CAATTGCGGTGAAAAGGGAAAG 58.941 45.455 0.00 0.00 0.00 2.62
1619 2388 2.352617 GCTGGAAAATCAATTGCGGTGA 60.353 45.455 0.00 0.00 30.44 4.02
1652 2427 1.522258 CGTTCACAACAAAGGCAATGC 59.478 47.619 0.00 0.00 0.00 3.56
1673 2448 6.343716 ACATAACTGAATTTGCCATGTCAA 57.656 33.333 0.00 0.00 0.00 3.18
1682 2457 5.124457 CCCTGACAGGACATAACTGAATTTG 59.876 44.000 23.77 0.00 37.67 2.32
1702 2477 2.162681 GAACACTTGATTGTCCCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
1713 2488 0.596600 GTGACTCGCCGAACACTTGA 60.597 55.000 14.02 0.00 0.00 3.02
1714 2489 0.597637 AGTGACTCGCCGAACACTTG 60.598 55.000 16.89 0.00 40.03 3.16
1815 3544 8.239314 GCTTCAATCATCATGTTTCTGACTAAA 58.761 33.333 0.00 0.00 0.00 1.85
1816 3545 7.391275 TGCTTCAATCATCATGTTTCTGACTAA 59.609 33.333 0.00 0.00 0.00 2.24
1817 3546 6.880529 TGCTTCAATCATCATGTTTCTGACTA 59.119 34.615 0.00 0.00 0.00 2.59
1819 3548 5.946298 TGCTTCAATCATCATGTTTCTGAC 58.054 37.500 0.00 0.00 0.00 3.51
1823 3654 4.995124 AGCTGCTTCAATCATCATGTTTC 58.005 39.130 0.00 0.00 0.00 2.78
1969 3816 2.679059 GCATGCAGGCCACGATATCTAT 60.679 50.000 13.44 0.00 0.00 1.98
2214 4061 3.441222 CACAGCAGGAAGAAATGCATACA 59.559 43.478 0.00 0.00 45.01 2.29
2227 4074 1.881973 GAATGACAAAGCACAGCAGGA 59.118 47.619 0.00 0.00 0.00 3.86
2228 4075 1.068055 GGAATGACAAAGCACAGCAGG 60.068 52.381 0.00 0.00 0.00 4.85
2245 4096 4.079970 ACTAGACTCGTGTTCAGATGGAA 58.920 43.478 0.00 0.00 0.00 3.53
2289 4148 6.098266 GGGCCAAAATTCCTACATAGTGAAAT 59.902 38.462 4.39 0.00 0.00 2.17
2440 4299 3.728845 AGCACATAACTGTCACGAACTT 58.271 40.909 0.00 0.00 31.62 2.66
2457 4316 1.815003 CAACCCAGAATTCAGGAGCAC 59.185 52.381 17.95 0.00 0.00 4.40
2592 4452 5.295292 TCCTCTTTAACGATCTCGAACGTAT 59.705 40.000 6.60 6.12 41.87 3.06
2677 4537 3.628942 GCCTTGTCACATGATCATTGCTA 59.371 43.478 5.16 0.00 0.00 3.49
2721 4581 3.149196 AGTTTGTGGGCTCAACATGTAG 58.851 45.455 0.00 0.00 0.00 2.74
2814 5237 6.910433 ACAAACAAACTTACATTAACTCGCAG 59.090 34.615 0.00 0.00 0.00 5.18
2859 5282 2.183679 CCAGAGCTAGAAAGGGTGTCT 58.816 52.381 0.00 0.00 0.00 3.41
2928 5353 8.698973 TTTGACAAGATAAGGTTGGATTACAA 57.301 30.769 0.00 0.00 36.54 2.41
2929 5354 8.877864 ATTTGACAAGATAAGGTTGGATTACA 57.122 30.769 0.00 0.00 0.00 2.41
2972 5398 5.001232 GGACATTTTAGAGTTGGCTACACA 58.999 41.667 1.24 0.00 0.00 3.72
2996 5451 4.402793 TGCTCTCCCAAGTATGTAGAAGAC 59.597 45.833 0.00 0.00 0.00 3.01
3012 5467 1.588597 GCCCAAAAGCTTGCTCTCC 59.411 57.895 0.00 0.00 0.00 3.71
3135 5701 1.072159 AACAGTGAGCTGGTCCTGC 59.928 57.895 12.66 12.66 46.62 4.85
3144 5710 2.180131 CTGCAAGGCGAACAGTGAGC 62.180 60.000 0.00 0.00 0.00 4.26
3172 5752 4.310769 CTCAGAAACTGGAACTGTCGAAT 58.689 43.478 0.00 0.00 40.38 3.34
3175 5755 2.224066 ACCTCAGAAACTGGAACTGTCG 60.224 50.000 0.00 0.00 40.38 4.35
3176 5756 3.070302 AGACCTCAGAAACTGGAACTGTC 59.930 47.826 0.00 0.00 40.38 3.51
3283 5864 1.919600 ATGAGGGGAGACTTGCCAGC 61.920 60.000 0.00 0.00 36.32 4.85
3309 5890 3.962530 GATGGAGGGGGTGGGGTCA 62.963 68.421 0.00 0.00 0.00 4.02
3310 5891 3.097162 GATGGAGGGGGTGGGGTC 61.097 72.222 0.00 0.00 0.00 4.46
3328 5912 2.299297 CTGGAGGAAAAGGTACGAGTGT 59.701 50.000 0.00 0.00 0.00 3.55
3336 5920 2.376518 TGAATCTGCTGGAGGAAAAGGT 59.623 45.455 0.00 0.00 0.00 3.50
3353 5937 3.006752 GGATGAAGAGCGAGAGGATGAAT 59.993 47.826 0.00 0.00 0.00 2.57
3354 5938 2.363680 GGATGAAGAGCGAGAGGATGAA 59.636 50.000 0.00 0.00 0.00 2.57
3408 5993 2.037136 CAGGCAAAGGAGCAGGACG 61.037 63.158 0.00 0.00 35.83 4.79
3428 6013 1.205055 GGAGTGGGAGTAGGGGAAAG 58.795 60.000 0.00 0.00 0.00 2.62
3443 6029 4.320456 CTGCTGCGGTGGTGGAGT 62.320 66.667 0.00 0.00 0.00 3.85
3451 6037 1.811266 CGTTGATAGCTGCTGCGGT 60.811 57.895 13.43 5.92 45.42 5.68
3453 6039 1.633171 GACGTTGATAGCTGCTGCG 59.367 57.895 13.43 10.93 45.42 5.18
3516 6102 1.893801 GTCCTGTACTGCTGTACCAGT 59.106 52.381 25.51 9.35 46.19 4.00
3520 6106 1.067071 GGTGGTCCTGTACTGCTGTAC 60.067 57.143 22.87 22.87 46.74 2.90
3521 6107 1.203137 AGGTGGTCCTGTACTGCTGTA 60.203 52.381 0.00 0.00 43.33 2.74
3522 6108 0.471971 AGGTGGTCCTGTACTGCTGT 60.472 55.000 0.66 0.66 43.33 4.40
3523 6109 0.247736 GAGGTGGTCCTGTACTGCTG 59.752 60.000 0.00 0.00 45.24 4.41
3524 6110 0.905337 GGAGGTGGTCCTGTACTGCT 60.905 60.000 0.00 0.00 45.24 4.24
3525 6111 1.597461 GGAGGTGGTCCTGTACTGC 59.403 63.158 0.00 0.00 45.24 4.40
3534 6120 1.078143 GCATGGAGTGGAGGTGGTC 60.078 63.158 0.00 0.00 0.00 4.02
3670 6256 7.919690 ACAGGTTTGTGATTGACATAATATCG 58.080 34.615 0.00 0.00 35.83 2.92
3730 6322 7.795047 TGTATACCATCAAGTCAAGTCATCAT 58.205 34.615 0.00 0.00 0.00 2.45
3812 6438 1.478510 ACCATGTGACCGTTTTTGCAA 59.521 42.857 0.00 0.00 0.00 4.08
3813 6439 1.107114 ACCATGTGACCGTTTTTGCA 58.893 45.000 0.00 0.00 0.00 4.08
3814 6440 1.066303 TCACCATGTGACCGTTTTTGC 59.934 47.619 0.00 0.00 37.67 3.68
3816 6442 3.634448 TGAATCACCATGTGACCGTTTTT 59.366 39.130 0.00 0.00 45.65 1.94
3821 6447 2.910199 AGATGAATCACCATGTGACCG 58.090 47.619 0.00 0.00 45.65 4.79
3822 6448 4.012374 ACAAGATGAATCACCATGTGACC 58.988 43.478 0.00 0.00 45.65 4.02
4067 6757 7.451877 ACTTTCAATACTCTGACCAGTAGAAGA 59.548 37.037 0.00 0.00 32.28 2.87
4075 6765 4.284490 AGCTCACTTTCAATACTCTGACCA 59.716 41.667 0.00 0.00 0.00 4.02
4196 6889 8.038351 GCTTACTTTTTCCTCTTCTATCTCAGT 58.962 37.037 0.00 0.00 0.00 3.41
4214 6907 8.531982 TCTCATAATCAGTACTGTGCTTACTTT 58.468 33.333 21.99 7.31 0.00 2.66
4307 7010 3.073798 TCTCACCTTCCTGTATTGGCAAA 59.926 43.478 3.01 0.00 0.00 3.68
4394 7097 6.968263 TGTTTACCATCTTCATCACCAAAA 57.032 33.333 0.00 0.00 0.00 2.44
4557 7278 8.987599 ACATAGCAATCGTATTAAACAAATCG 57.012 30.769 0.00 0.00 0.00 3.34
4589 7310 5.690865 TGAGTAACCATTTTGTCCAAGAGT 58.309 37.500 0.00 0.00 0.00 3.24
4721 7573 1.202580 CCTTGAATCGGAGCCTGGTAG 60.203 57.143 0.00 0.00 0.00 3.18
4874 7726 4.339247 GGGCAGCAAATAGTATGTGACAAT 59.661 41.667 4.36 0.00 0.00 2.71
4914 7891 9.561069 GAGGAAAGCATAATACTGATTCCTTTA 57.439 33.333 5.70 0.00 40.83 1.85
4915 7892 8.277918 AGAGGAAAGCATAATACTGATTCCTTT 58.722 33.333 5.70 0.00 40.83 3.11
4916 7893 7.810260 AGAGGAAAGCATAATACTGATTCCTT 58.190 34.615 5.70 0.00 40.83 3.36
4917 7894 7.385894 AGAGGAAAGCATAATACTGATTCCT 57.614 36.000 3.95 3.95 42.17 3.36
4967 7952 7.443302 AACTTCTCCCATGAAGAGATAATCA 57.557 36.000 14.02 1.64 44.40 2.57
4996 7981 2.494471 CCTCAAAATGCATGCTCTTGGA 59.506 45.455 20.33 13.30 0.00 3.53
5000 7985 2.522185 ACACCTCAAAATGCATGCTCT 58.478 42.857 20.33 3.10 0.00 4.09
5001 7986 4.439305 TTACACCTCAAAATGCATGCTC 57.561 40.909 20.33 0.00 0.00 4.26
5015 8000 9.729281 TCGAAAAGAAAACCTAATATTACACCT 57.271 29.630 0.00 0.00 0.00 4.00
5040 8025 3.824414 ACCGGACAATGAAATCGTTTC 57.176 42.857 9.46 4.24 40.08 2.78
5181 8166 0.393077 ATATTACTGAAGCCGCGCCT 59.607 50.000 0.00 0.00 0.00 5.52
5234 8222 7.786943 ACAGATTACCATCAGAAGATAAGAGGA 59.213 37.037 0.00 0.00 31.88 3.71
5292 8280 4.020307 TCACAGCTCATGTCAGTTTCCATA 60.020 41.667 0.00 0.00 41.41 2.74
5299 8287 5.411831 TCTAATTCACAGCTCATGTCAGT 57.588 39.130 0.00 0.00 41.41 3.41
5300 8288 5.640783 TGTTCTAATTCACAGCTCATGTCAG 59.359 40.000 0.00 0.00 41.41 3.51
5316 8304 5.634020 GCTCGAAGTACAACACTGTTCTAAT 59.366 40.000 0.00 0.00 37.63 1.73
5325 8313 2.470821 ACACTGCTCGAAGTACAACAC 58.529 47.619 0.00 0.00 0.00 3.32
5336 8324 1.269257 TGAGACACTCAACACTGCTCG 60.269 52.381 0.00 0.00 37.57 5.03
5347 8335 3.509575 ACTGGTTCTGATCTGAGACACTC 59.490 47.826 2.33 0.00 0.00 3.51
5387 8375 7.542534 ACTTAACATTAACAGTTCACGTTCA 57.457 32.000 0.00 0.00 0.00 3.18
5390 8378 7.148373 ACACAACTTAACATTAACAGTTCACGT 60.148 33.333 0.00 0.00 0.00 4.49
5391 8379 7.184106 ACACAACTTAACATTAACAGTTCACG 58.816 34.615 0.00 0.00 0.00 4.35
5423 8412 7.099666 TGTGTAATTGTAAATTCAAAAGCGC 57.900 32.000 0.00 0.00 0.00 5.92
5424 8413 7.619161 GCCTGTGTAATTGTAAATTCAAAAGCG 60.619 37.037 0.00 0.00 0.00 4.68
5445 8434 1.348036 GTAGTTTCCTGTCCTGCCTGT 59.652 52.381 0.00 0.00 0.00 4.00
5490 8479 3.257393 CAGCTGAATCCGATGTATAGCC 58.743 50.000 8.42 0.00 0.00 3.93
5491 8480 2.670414 GCAGCTGAATCCGATGTATAGC 59.330 50.000 20.43 0.00 0.00 2.97
5556 8553 4.035558 GTGAGGAATGCGCTTCATGATTTA 59.964 41.667 9.73 0.00 35.13 1.40
5557 8554 3.018856 TGAGGAATGCGCTTCATGATTT 58.981 40.909 9.73 0.00 35.13 2.17
5569 8566 2.134789 AACATCAGGGTGAGGAATGC 57.865 50.000 0.00 0.00 31.79 3.56
5609 8606 7.836842 TGCTCAGAGATGTAATACAACTGTTA 58.163 34.615 7.93 0.00 31.03 2.41
5645 10144 1.265905 CAAAACAAGTGCTCCCGGTAC 59.734 52.381 0.00 0.00 0.00 3.34
5651 10150 3.817647 ACTCTGATCAAAACAAGTGCTCC 59.182 43.478 0.00 0.00 0.00 4.70
5686 10185 0.677731 GGCAGAAGCATGGTAGCACA 60.678 55.000 15.67 0.00 44.61 4.57
5700 10200 2.425312 GACATTCTTCTCTCGAGGCAGA 59.575 50.000 13.56 6.13 0.00 4.26
5707 10207 7.800767 TCTCAAATTTTGACATTCTTCTCTCG 58.199 34.615 7.74 0.00 35.46 4.04
5744 10244 4.988708 ATTTCATTGACGCGCAAAAATT 57.011 31.818 17.38 9.96 40.48 1.82
5745 10245 5.160641 ACTATTTCATTGACGCGCAAAAAT 58.839 33.333 17.38 18.76 40.48 1.82
5746 10246 4.541779 ACTATTTCATTGACGCGCAAAAA 58.458 34.783 17.38 14.50 40.48 1.94
5747 10247 4.153958 ACTATTTCATTGACGCGCAAAA 57.846 36.364 17.38 9.69 40.48 2.44
5748 10248 3.822594 ACTATTTCATTGACGCGCAAA 57.177 38.095 17.38 8.15 40.48 3.68
5749 10249 3.822594 AACTATTTCATTGACGCGCAA 57.177 38.095 16.15 16.15 41.53 4.85
5750 10250 3.187432 TGAAACTATTTCATTGACGCGCA 59.813 39.130 5.73 1.71 44.21 6.09
5751 10251 3.742786 TGAAACTATTTCATTGACGCGC 58.257 40.909 5.73 0.00 44.21 6.86
5760 10260 4.155644 TCATGCGCATGTGAAACTATTTCA 59.844 37.500 40.57 20.28 40.96 2.69
5761 10261 4.661125 TCATGCGCATGTGAAACTATTTC 58.339 39.130 40.57 0.00 39.72 2.17
5764 10264 5.296531 TGTTATCATGCGCATGTGAAACTAT 59.703 36.000 40.57 29.07 39.72 2.12
5765 10265 4.633565 TGTTATCATGCGCATGTGAAACTA 59.366 37.500 40.57 27.53 39.72 2.24
5766 10266 3.439825 TGTTATCATGCGCATGTGAAACT 59.560 39.130 40.57 24.16 39.72 2.66
5768 10268 3.688673 TCTGTTATCATGCGCATGTGAAA 59.311 39.130 40.57 30.31 39.72 2.69
5769 10269 3.269178 TCTGTTATCATGCGCATGTGAA 58.731 40.909 40.57 32.32 39.72 3.18
5771 10271 2.601504 GCTCTGTTATCATGCGCATGTG 60.602 50.000 40.57 25.15 39.72 3.21
5772 10272 1.600957 GCTCTGTTATCATGCGCATGT 59.399 47.619 40.57 30.95 39.72 3.21
5773 10273 1.600485 TGCTCTGTTATCATGCGCATG 59.400 47.619 38.48 38.48 40.09 4.06
5775 10275 1.736612 TTGCTCTGTTATCATGCGCA 58.263 45.000 14.96 14.96 0.00 6.09
5776 10276 2.830772 TTTGCTCTGTTATCATGCGC 57.169 45.000 0.00 0.00 0.00 6.09
5778 10278 7.031372 TCTCAAATTTTGCTCTGTTATCATGC 58.969 34.615 4.19 0.00 0.00 4.06
5779 10279 8.975410 TTCTCAAATTTTGCTCTGTTATCATG 57.025 30.769 4.19 0.00 0.00 3.07
5786 10286 8.632679 TCTGTTATTTCTCAAATTTTGCTCTGT 58.367 29.630 4.19 0.00 32.38 3.41
5787 10287 9.125906 CTCTGTTATTTCTCAAATTTTGCTCTG 57.874 33.333 4.19 0.00 32.38 3.35
5788 10288 7.811713 GCTCTGTTATTTCTCAAATTTTGCTCT 59.188 33.333 4.19 0.00 32.38 4.09
5789 10289 7.596248 TGCTCTGTTATTTCTCAAATTTTGCTC 59.404 33.333 4.19 0.00 32.38 4.26
5790 10290 7.436118 TGCTCTGTTATTTCTCAAATTTTGCT 58.564 30.769 4.19 0.00 32.38 3.91
5791 10291 7.642071 TGCTCTGTTATTTCTCAAATTTTGC 57.358 32.000 4.19 0.00 32.38 3.68
5792 10292 8.219105 GCTTGCTCTGTTATTTCTCAAATTTTG 58.781 33.333 2.59 2.59 32.38 2.44
5797 10340 5.048504 CCAGCTTGCTCTGTTATTTCTCAAA 60.049 40.000 0.00 0.00 32.32 2.69
5807 10350 1.670406 CTCGCCAGCTTGCTCTGTT 60.670 57.895 8.31 0.00 32.32 3.16
5808 10351 2.047465 CTCGCCAGCTTGCTCTGT 60.047 61.111 8.31 0.00 32.32 3.41
5809 10352 1.633852 GAACTCGCCAGCTTGCTCTG 61.634 60.000 8.31 0.60 0.00 3.35
5810 10353 1.375268 GAACTCGCCAGCTTGCTCT 60.375 57.895 8.31 0.00 0.00 4.09
5811 10354 1.023513 ATGAACTCGCCAGCTTGCTC 61.024 55.000 8.31 0.00 0.00 4.26
5812 10355 1.002868 ATGAACTCGCCAGCTTGCT 60.003 52.632 8.31 0.00 0.00 3.91
5813 10356 1.136147 CATGAACTCGCCAGCTTGC 59.864 57.895 0.00 0.00 0.00 4.01
5814 10357 0.445436 GTCATGAACTCGCCAGCTTG 59.555 55.000 0.00 0.00 0.00 4.01
5816 10359 1.078848 GGTCATGAACTCGCCAGCT 60.079 57.895 2.64 0.00 0.00 4.24
5817 10360 1.078848 AGGTCATGAACTCGCCAGC 60.079 57.895 7.68 0.00 0.00 4.85
5818 10361 3.056628 GAGGTCATGAACTCGCCAG 57.943 57.895 24.41 0.00 35.18 4.85
5829 10372 3.708403 TTCTGCAATGTCTGAGGTCAT 57.292 42.857 0.00 0.00 0.00 3.06
5861 10634 1.916506 TGATCGGTTTGCCCATTTCA 58.083 45.000 0.00 0.00 0.00 2.69
5867 10640 0.958822 ACAGTTTGATCGGTTTGCCC 59.041 50.000 0.00 0.00 0.00 5.36
5914 10687 4.214986 TCATGGCGATTTCCTTCTACAA 57.785 40.909 0.00 0.00 0.00 2.41
5916 10689 4.394920 TGTTTCATGGCGATTTCCTTCTAC 59.605 41.667 0.00 0.00 0.00 2.59
5935 10708 6.532302 CACATGTATGCATATTTGTGCTGTTT 59.468 34.615 25.96 5.22 45.27 2.83
6041 10814 8.299570 GGGTGCCAAATTATAGAAATAGATGTG 58.700 37.037 0.00 0.00 0.00 3.21
6046 10819 6.877611 ACGGGTGCCAAATTATAGAAATAG 57.122 37.500 0.00 0.00 0.00 1.73
6101 10874 3.555966 CGGGAGCCAGGAATTAAAGATT 58.444 45.455 0.00 0.00 0.00 2.40
6141 10914 3.327404 GCCTTTGGTCCCCTCGGA 61.327 66.667 0.00 0.00 35.01 4.55
6143 10916 2.269241 GAGCCTTTGGTCCCCTCG 59.731 66.667 0.00 0.00 32.76 4.63
6144 10917 2.269241 CGAGCCTTTGGTCCCCTC 59.731 66.667 0.00 0.00 35.55 4.30
6164 10937 0.960364 TCAAGCGTCTTTCCCATGGC 60.960 55.000 6.09 0.00 0.00 4.40
6165 10938 1.089920 CTCAAGCGTCTTTCCCATGG 58.910 55.000 4.14 4.14 0.00 3.66
6166 10939 2.099141 TCTCAAGCGTCTTTCCCATG 57.901 50.000 0.00 0.00 0.00 3.66
6167 10940 2.636830 CATCTCAAGCGTCTTTCCCAT 58.363 47.619 0.00 0.00 0.00 4.00
6168 10941 1.339055 CCATCTCAAGCGTCTTTCCCA 60.339 52.381 0.00 0.00 0.00 4.37
6169 10942 1.339151 ACCATCTCAAGCGTCTTTCCC 60.339 52.381 0.00 0.00 0.00 3.97
6188 10961 2.177531 CAAGCGGCTGTGCATCAC 59.822 61.111 1.81 0.00 37.31 3.06
6213 10986 2.512476 TGGGGAGGGATTAAAAGGCTAC 59.488 50.000 0.00 0.00 0.00 3.58
6238 11011 2.677914 GGCTAATTAAGGCCACCCAAT 58.322 47.619 5.01 0.00 46.84 3.16
6247 11020 3.885901 GGGAGAAAGCTGGCTAATTAAGG 59.114 47.826 0.00 0.00 0.00 2.69
6258 11031 2.955660 AGTCGAGATAGGGAGAAAGCTG 59.044 50.000 0.00 0.00 0.00 4.24
6276 11049 3.738590 GCAATAGGAAACCCTCTCGAGTC 60.739 52.174 13.13 0.76 35.26 3.36
6277 11050 2.168728 GCAATAGGAAACCCTCTCGAGT 59.831 50.000 13.13 0.00 35.26 4.18
6278 11051 2.168521 TGCAATAGGAAACCCTCTCGAG 59.831 50.000 5.93 5.93 35.26 4.04
6279 11052 2.168521 CTGCAATAGGAAACCCTCTCGA 59.831 50.000 0.00 0.00 35.26 4.04
6280 11053 2.555199 CTGCAATAGGAAACCCTCTCG 58.445 52.381 0.00 0.00 35.26 4.04
6281 11054 2.293170 GCTGCAATAGGAAACCCTCTC 58.707 52.381 0.00 0.00 35.26 3.20
6282 11055 1.064389 GGCTGCAATAGGAAACCCTCT 60.064 52.381 0.50 0.00 35.26 3.69
6283 11056 1.393603 GGCTGCAATAGGAAACCCTC 58.606 55.000 0.50 0.00 35.26 4.30
6284 11057 0.394352 CGGCTGCAATAGGAAACCCT 60.394 55.000 0.50 0.00 37.84 4.34
6285 11058 2.004808 GCGGCTGCAATAGGAAACCC 62.005 60.000 14.08 0.00 42.15 4.11
6286 11059 1.433471 GCGGCTGCAATAGGAAACC 59.567 57.895 14.08 0.00 42.15 3.27
6287 11060 1.433471 GGCGGCTGCAATAGGAAAC 59.567 57.895 21.31 0.00 45.35 2.78
6288 11061 2.112198 CGGCGGCTGCAATAGGAAA 61.112 57.895 21.31 0.00 45.35 3.13
6289 11062 2.513666 CGGCGGCTGCAATAGGAA 60.514 61.111 21.31 0.00 45.35 3.36
6290 11063 3.733344 GACGGCGGCTGCAATAGGA 62.733 63.158 21.31 0.00 45.35 2.94
6291 11064 3.272334 GACGGCGGCTGCAATAGG 61.272 66.667 21.31 5.06 45.35 2.57
6292 11065 3.272334 GGACGGCGGCTGCAATAG 61.272 66.667 21.31 9.81 45.35 1.73
6293 11066 4.849310 GGGACGGCGGCTGCAATA 62.849 66.667 21.31 0.00 45.35 1.90
6316 11089 3.909662 CCAAGATGGCAACCGGAG 58.090 61.111 9.46 0.15 0.00 4.63
6325 11098 0.036010 ACCTCTCAACGCCAAGATGG 60.036 55.000 0.00 0.00 41.55 3.51
6326 11099 1.081892 CACCTCTCAACGCCAAGATG 58.918 55.000 0.00 0.00 0.00 2.90
6327 11100 0.036010 CCACCTCTCAACGCCAAGAT 60.036 55.000 0.00 0.00 0.00 2.40
6328 11101 1.371183 CCACCTCTCAACGCCAAGA 59.629 57.895 0.00 0.00 0.00 3.02
6329 11102 1.672356 CCCACCTCTCAACGCCAAG 60.672 63.158 0.00 0.00 0.00 3.61
6330 11103 2.429930 CCCACCTCTCAACGCCAA 59.570 61.111 0.00 0.00 0.00 4.52
6331 11104 3.636231 CCCCACCTCTCAACGCCA 61.636 66.667 0.00 0.00 0.00 5.69
6332 11105 4.410400 CCCCCACCTCTCAACGCC 62.410 72.222 0.00 0.00 0.00 5.68
6346 11119 2.767960 TCTTAAATACACGAGGTCCCCC 59.232 50.000 0.00 0.00 0.00 5.40
6347 11120 3.450096 ACTCTTAAATACACGAGGTCCCC 59.550 47.826 0.00 0.00 0.00 4.81
6348 11121 4.732672 ACTCTTAAATACACGAGGTCCC 57.267 45.455 0.00 0.00 0.00 4.46
6349 11122 5.963594 AGAACTCTTAAATACACGAGGTCC 58.036 41.667 0.00 0.00 40.26 4.46
6350 11123 8.189460 ACATAGAACTCTTAAATACACGAGGTC 58.811 37.037 0.00 0.00 39.82 3.85
6351 11124 8.064336 ACATAGAACTCTTAAATACACGAGGT 57.936 34.615 0.00 0.00 0.00 3.85
6352 11125 8.928270 AACATAGAACTCTTAAATACACGAGG 57.072 34.615 0.00 0.00 0.00 4.63
6353 11126 9.790389 AGAACATAGAACTCTTAAATACACGAG 57.210 33.333 0.00 0.00 0.00 4.18
6360 11133 9.706691 TTGACGAAGAACATAGAACTCTTAAAT 57.293 29.630 0.00 0.00 29.59 1.40
6361 11134 8.975439 GTTGACGAAGAACATAGAACTCTTAAA 58.025 33.333 0.00 0.00 29.59 1.52
6362 11135 8.139350 TGTTGACGAAGAACATAGAACTCTTAA 58.861 33.333 0.00 0.00 29.59 1.85
6363 11136 7.654568 TGTTGACGAAGAACATAGAACTCTTA 58.345 34.615 0.00 0.00 29.59 2.10
6364 11137 6.513180 TGTTGACGAAGAACATAGAACTCTT 58.487 36.000 0.00 0.00 32.11 2.85
6365 11138 6.085555 TGTTGACGAAGAACATAGAACTCT 57.914 37.500 0.00 0.00 0.00 3.24
6366 11139 6.809196 AGATGTTGACGAAGAACATAGAACTC 59.191 38.462 10.11 1.40 42.74 3.01
6367 11140 6.692486 AGATGTTGACGAAGAACATAGAACT 58.308 36.000 10.11 3.30 42.74 3.01
6368 11141 6.952935 AGATGTTGACGAAGAACATAGAAC 57.047 37.500 10.11 0.00 42.74 3.01
6369 11142 7.755373 CACTAGATGTTGACGAAGAACATAGAA 59.245 37.037 0.00 1.81 42.74 2.10
6370 11143 7.120726 TCACTAGATGTTGACGAAGAACATAGA 59.879 37.037 0.00 3.39 42.74 1.98
6371 11144 7.251281 TCACTAGATGTTGACGAAGAACATAG 58.749 38.462 0.00 8.37 42.74 2.23
6372 11145 7.153217 TCACTAGATGTTGACGAAGAACATA 57.847 36.000 0.00 0.00 42.74 2.29
6373 11146 6.025749 TCACTAGATGTTGACGAAGAACAT 57.974 37.500 0.00 9.97 44.82 2.71
6374 11147 5.447624 TCACTAGATGTTGACGAAGAACA 57.552 39.130 0.00 0.00 37.70 3.18
6375 11148 6.093404 TGATCACTAGATGTTGACGAAGAAC 58.907 40.000 0.00 0.00 33.72 3.01
6376 11149 6.267496 TGATCACTAGATGTTGACGAAGAA 57.733 37.500 0.00 0.00 33.72 2.52
6377 11150 5.897377 TGATCACTAGATGTTGACGAAGA 57.103 39.130 0.00 0.00 33.72 2.87
6378 11151 5.397828 CGATGATCACTAGATGTTGACGAAG 59.602 44.000 0.00 0.00 33.72 3.79
6379 11152 5.273944 CGATGATCACTAGATGTTGACGAA 58.726 41.667 0.00 0.00 33.72 3.85
6380 11153 4.789802 GCGATGATCACTAGATGTTGACGA 60.790 45.833 0.00 0.00 33.72 4.20
6381 11154 3.423536 GCGATGATCACTAGATGTTGACG 59.576 47.826 0.00 0.00 33.72 4.35
6382 11155 4.363138 TGCGATGATCACTAGATGTTGAC 58.637 43.478 0.00 0.00 33.72 3.18
6383 11156 4.654091 TGCGATGATCACTAGATGTTGA 57.346 40.909 0.00 0.00 33.72 3.18
6384 11157 5.919272 AATGCGATGATCACTAGATGTTG 57.081 39.130 0.00 0.00 33.72 3.33
6385 11158 7.874528 TCATAAATGCGATGATCACTAGATGTT 59.125 33.333 0.00 0.00 33.72 2.71
6386 11159 7.381323 TCATAAATGCGATGATCACTAGATGT 58.619 34.615 0.00 0.00 33.72 3.06
6387 11160 7.758528 TCTCATAAATGCGATGATCACTAGATG 59.241 37.037 0.00 0.00 33.72 2.90
6388 11161 7.834803 TCTCATAAATGCGATGATCACTAGAT 58.165 34.615 0.00 0.00 37.13 1.98
6389 11162 7.219484 TCTCATAAATGCGATGATCACTAGA 57.781 36.000 0.00 0.00 32.96 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.