Multiple sequence alignment - TraesCS7A01G521700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G521700 chr7A 100.000 3620 0 0 1 3620 705333575 705329956 0.000000e+00 6685
1 TraesCS7A01G521700 chr7A 86.380 1674 184 23 774 2424 705296893 705298545 0.000000e+00 1788
2 TraesCS7A01G521700 chr7A 88.496 113 12 1 235 346 659590348 659590236 6.300000e-28 135
3 TraesCS7A01G521700 chr7A 81.690 142 20 6 209 346 102489894 102490033 2.950000e-21 113
4 TraesCS7A01G521700 chr7D 93.508 2403 108 15 709 3107 613661770 613659412 0.000000e+00 3530
5 TraesCS7A01G521700 chr7D 87.024 1680 164 30 774 2424 627449593 627451247 0.000000e+00 1845
6 TraesCS7A01G521700 chr7D 87.050 1529 182 13 905 2424 613626240 613627761 0.000000e+00 1712
7 TraesCS7A01G521700 chr7D 96.101 513 20 0 3108 3620 375364556 375364044 0.000000e+00 837
8 TraesCS7A01G521700 chr7D 95.906 513 21 0 3108 3620 119876862 119876350 0.000000e+00 832
9 TraesCS7A01G521700 chr7D 95.551 517 23 0 3104 3620 378502283 378502799 0.000000e+00 828
10 TraesCS7A01G521700 chr7D 94.857 525 25 2 3098 3620 294123695 294123171 0.000000e+00 819
11 TraesCS7A01G521700 chr7D 84.387 269 27 11 905 1168 613649464 613649722 2.160000e-62 250
12 TraesCS7A01G521700 chr7D 91.228 114 8 1 1 114 613662338 613662227 1.740000e-33 154
13 TraesCS7A01G521700 chr7B 93.428 1826 73 18 709 2494 704637738 704635920 0.000000e+00 2663
14 TraesCS7A01G521700 chr7B 87.908 1563 167 15 874 2424 704547786 704549338 0.000000e+00 1820
15 TraesCS7A01G521700 chr7B 87.966 1529 158 16 904 2424 704289544 704291054 0.000000e+00 1781
16 TraesCS7A01G521700 chr7B 85.499 931 116 9 929 1844 728933715 728934641 0.000000e+00 953
17 TraesCS7A01G521700 chr7B 88.269 699 79 2 1729 2424 704317466 704316768 0.000000e+00 833
18 TraesCS7A01G521700 chr7B 84.962 798 113 7 905 1699 704318255 704317462 0.000000e+00 802
19 TraesCS7A01G521700 chr7B 88.200 661 76 2 1764 2424 729217430 729218088 0.000000e+00 787
20 TraesCS7A01G521700 chr7B 92.806 278 18 2 328 605 498256805 498256530 5.630000e-108 401
21 TraesCS7A01G521700 chr7B 92.982 114 5 2 1 114 704641067 704640957 2.890000e-36 163
22 TraesCS7A01G521700 chr1A 96.101 513 20 0 3108 3620 391913961 391914473 0.000000e+00 837
23 TraesCS7A01G521700 chr4A 95.906 513 21 0 3108 3620 512531798 512532310 0.000000e+00 832
24 TraesCS7A01G521700 chr4A 87.611 113 13 1 235 346 609563194 609563082 2.930000e-26 130
25 TraesCS7A01G521700 chr4A 77.637 237 38 10 2593 2821 659767165 659767394 2.930000e-26 130
26 TraesCS7A01G521700 chr4A 77.215 237 39 10 2593 2821 659796827 659797056 1.360000e-24 124
27 TraesCS7A01G521700 chr2A 95.906 513 21 0 3108 3620 410817765 410818277 0.000000e+00 832
28 TraesCS7A01G521700 chr2A 89.720 107 10 1 600 705 158059925 158059819 6.300000e-28 135
29 TraesCS7A01G521700 chr2A 90.291 103 9 1 600 701 50428419 50428317 2.270000e-27 134
30 TraesCS7A01G521700 chr1D 95.411 523 23 1 3098 3620 225047451 225046930 0.000000e+00 832
31 TraesCS7A01G521700 chr1D 95.543 516 23 0 3105 3620 212050016 212050531 0.000000e+00 826
32 TraesCS7A01G521700 chr1D 86.726 113 14 1 235 346 320973495 320973607 1.360000e-24 124
33 TraesCS7A01G521700 chr6D 95.785 261 11 0 345 605 272142898 272143158 4.320000e-114 422
34 TraesCS7A01G521700 chr6D 95.019 261 13 0 345 605 168010114 168009854 9.350000e-111 411
35 TraesCS7A01G521700 chr6D 94.636 261 14 0 345 605 168651859 168652119 4.350000e-109 405
36 TraesCS7A01G521700 chr6D 94.636 261 14 0 345 605 221678569 221678309 4.350000e-109 405
37 TraesCS7A01G521700 chr3D 95.402 261 12 0 345 605 231411677 231411417 2.010000e-112 416
38 TraesCS7A01G521700 chr3D 88.785 107 11 1 600 705 582299652 582299546 2.930000e-26 130
39 TraesCS7A01G521700 chr3D 86.842 114 12 3 235 346 591661077 591660965 1.360000e-24 124
40 TraesCS7A01G521700 chr2D 95.402 261 12 0 345 605 408068383 408068643 2.010000e-112 416
41 TraesCS7A01G521700 chr2D 95.402 261 11 1 345 605 126207407 126207666 7.230000e-112 414
42 TraesCS7A01G521700 chr2D 87.611 113 13 1 235 346 204145411 204145299 2.930000e-26 130
43 TraesCS7A01G521700 chr2D 88.350 103 11 1 600 701 406960353 406960455 4.910000e-24 122
44 TraesCS7A01G521700 chr4B 95.019 261 13 0 345 605 327338180 327338440 9.350000e-111 411
45 TraesCS7A01G521700 chr6B 81.281 203 30 4 2878 3072 48223516 48223314 1.350000e-34 158
46 TraesCS7A01G521700 chr6B 90.654 107 9 1 600 705 557419280 557419174 1.360000e-29 141
47 TraesCS7A01G521700 chr5B 90.654 107 10 0 599 705 594745736 594745842 3.770000e-30 143
48 TraesCS7A01G521700 chr5A 89.381 113 11 1 235 346 690786193 690786081 1.360000e-29 141
49 TraesCS7A01G521700 chr6A 88.596 114 10 3 235 346 612293707 612293819 6.300000e-28 135
50 TraesCS7A01G521700 chr1B 88.785 107 11 1 600 705 389004635 389004741 2.930000e-26 130
51 TraesCS7A01G521700 chr1B 87.156 109 12 2 599 705 584475906 584476014 4.910000e-24 122
52 TraesCS7A01G521700 chr5D 89.796 98 8 2 600 696 129485168 129485264 1.360000e-24 124
53 TraesCS7A01G521700 chr3B 84.800 125 16 3 225 346 690108601 690108725 4.910000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G521700 chr7A 705329956 705333575 3619 True 6685.0 6685 100.0000 1 3620 1 chr7A.!!$R2 3619
1 TraesCS7A01G521700 chr7A 705296893 705298545 1652 False 1788.0 1788 86.3800 774 2424 1 chr7A.!!$F2 1650
2 TraesCS7A01G521700 chr7D 627449593 627451247 1654 False 1845.0 1845 87.0240 774 2424 1 chr7D.!!$F4 1650
3 TraesCS7A01G521700 chr7D 613659412 613662338 2926 True 1842.0 3530 92.3680 1 3107 2 chr7D.!!$R4 3106
4 TraesCS7A01G521700 chr7D 613626240 613627761 1521 False 1712.0 1712 87.0500 905 2424 1 chr7D.!!$F2 1519
5 TraesCS7A01G521700 chr7D 375364044 375364556 512 True 837.0 837 96.1010 3108 3620 1 chr7D.!!$R3 512
6 TraesCS7A01G521700 chr7D 119876350 119876862 512 True 832.0 832 95.9060 3108 3620 1 chr7D.!!$R1 512
7 TraesCS7A01G521700 chr7D 378502283 378502799 516 False 828.0 828 95.5510 3104 3620 1 chr7D.!!$F1 516
8 TraesCS7A01G521700 chr7D 294123171 294123695 524 True 819.0 819 94.8570 3098 3620 1 chr7D.!!$R2 522
9 TraesCS7A01G521700 chr7B 704547786 704549338 1552 False 1820.0 1820 87.9080 874 2424 1 chr7B.!!$F2 1550
10 TraesCS7A01G521700 chr7B 704289544 704291054 1510 False 1781.0 1781 87.9660 904 2424 1 chr7B.!!$F1 1520
11 TraesCS7A01G521700 chr7B 704635920 704641067 5147 True 1413.0 2663 93.2050 1 2494 2 chr7B.!!$R3 2493
12 TraesCS7A01G521700 chr7B 728933715 728934641 926 False 953.0 953 85.4990 929 1844 1 chr7B.!!$F3 915
13 TraesCS7A01G521700 chr7B 704316768 704318255 1487 True 817.5 833 86.6155 905 2424 2 chr7B.!!$R2 1519
14 TraesCS7A01G521700 chr7B 729217430 729218088 658 False 787.0 787 88.2000 1764 2424 1 chr7B.!!$F4 660
15 TraesCS7A01G521700 chr1A 391913961 391914473 512 False 837.0 837 96.1010 3108 3620 1 chr1A.!!$F1 512
16 TraesCS7A01G521700 chr4A 512531798 512532310 512 False 832.0 832 95.9060 3108 3620 1 chr4A.!!$F1 512
17 TraesCS7A01G521700 chr2A 410817765 410818277 512 False 832.0 832 95.9060 3108 3620 1 chr2A.!!$F1 512
18 TraesCS7A01G521700 chr1D 225046930 225047451 521 True 832.0 832 95.4110 3098 3620 1 chr1D.!!$R1 522
19 TraesCS7A01G521700 chr1D 212050016 212050531 515 False 826.0 826 95.5430 3105 3620 1 chr1D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 3692 0.107165 GCTGGGTGTATTGGAGGACC 60.107 60.000 0.00 0.0 0.00 4.46 F
332 3756 0.515564 CCGAAAAGAATTCCGCGTGT 59.484 50.000 4.92 0.0 0.00 4.49 F
372 3796 0.883833 CGGTCCTTTTTGCTCTGCAT 59.116 50.000 0.00 0.0 38.76 3.96 F
824 4250 1.033746 AGGTGCTCAAATGGCATCCG 61.034 55.000 0.00 0.0 41.27 4.18 F
2289 5781 1.006805 GCCATCATAGAGCTCGCGT 60.007 57.895 8.37 0.0 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 4644 1.488705 TTCATCACCTCCTTGGCCGT 61.489 55.000 0.00 0.0 40.22 5.68 R
2274 5766 0.598680 GCCAACGCGAGCTCTATGAT 60.599 55.000 15.93 0.0 0.00 2.45 R
2289 5781 2.660064 GGAAGAGGAGGCTCGCCAA 61.660 63.158 11.02 0.0 38.92 4.52 R
2453 5969 0.107848 ACCCGGAGCTTATTTGGACG 60.108 55.000 0.73 0.0 0.00 4.79 R
3588 7107 2.094700 CCTCTCCGACAATCGAAGTGAA 60.095 50.000 6.48 0.0 43.74 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 9.709495 AATTGTCTAAAATTGCAAGCAGATTTA 57.291 25.926 4.94 11.80 0.00 1.40
115 116 9.880157 ATTGTCTAAAATTGCAAGCAGATTTAT 57.120 25.926 4.94 0.00 0.00 1.40
116 117 8.915871 TGTCTAAAATTGCAAGCAGATTTATC 57.084 30.769 4.94 9.89 0.00 1.75
121 122 7.548196 AAATTGCAAGCAGATTTATCAATGG 57.452 32.000 4.94 0.00 0.00 3.16
122 123 4.659111 TGCAAGCAGATTTATCAATGGG 57.341 40.909 0.00 0.00 0.00 4.00
124 125 3.069158 GCAAGCAGATTTATCAATGGGCT 59.931 43.478 0.00 0.00 32.34 5.19
125 126 4.795308 GCAAGCAGATTTATCAATGGGCTC 60.795 45.833 0.00 0.00 30.63 4.70
126 127 3.144506 AGCAGATTTATCAATGGGCTCG 58.855 45.455 0.00 0.00 0.00 5.03
127 128 2.351157 GCAGATTTATCAATGGGCTCGC 60.351 50.000 0.00 0.00 0.00 5.03
129 130 2.158623 AGATTTATCAATGGGCTCGCCA 60.159 45.455 10.51 0.00 37.98 5.69
130 131 1.388547 TTTATCAATGGGCTCGCCAC 58.611 50.000 10.51 0.02 37.98 5.01
131 132 0.465460 TTATCAATGGGCTCGCCACC 60.465 55.000 10.51 0.00 37.98 4.61
132 133 1.631071 TATCAATGGGCTCGCCACCA 61.631 55.000 10.51 0.00 41.76 4.17
134 135 3.650950 AATGGGCTCGCCACCACT 61.651 61.111 10.51 0.00 40.05 4.00
135 136 3.210012 AATGGGCTCGCCACCACTT 62.210 57.895 10.51 0.00 40.05 3.16
138 139 2.045926 GGCTCGCCACCACTTGAT 60.046 61.111 2.41 0.00 35.81 2.57
139 140 1.675641 GGCTCGCCACCACTTGATT 60.676 57.895 2.41 0.00 35.81 2.57
141 142 0.598065 GCTCGCCACCACTTGATTTT 59.402 50.000 0.00 0.00 0.00 1.82
143 144 2.159517 GCTCGCCACCACTTGATTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
144 145 2.420022 CTCGCCACCACTTGATTTTAGG 59.580 50.000 0.00 0.00 0.00 2.69
146 147 2.161609 CGCCACCACTTGATTTTAGGTC 59.838 50.000 0.00 0.00 0.00 3.85
147 148 3.421844 GCCACCACTTGATTTTAGGTCT 58.578 45.455 0.00 0.00 0.00 3.85
148 149 3.191371 GCCACCACTTGATTTTAGGTCTG 59.809 47.826 0.00 0.00 0.00 3.51
149 150 4.651778 CCACCACTTGATTTTAGGTCTGA 58.348 43.478 0.00 0.00 0.00 3.27
151 152 5.063204 CACCACTTGATTTTAGGTCTGACA 58.937 41.667 10.38 0.00 0.00 3.58
153 154 4.154918 CCACTTGATTTTAGGTCTGACAGC 59.845 45.833 10.38 0.00 0.00 4.40
154 155 4.756642 CACTTGATTTTAGGTCTGACAGCA 59.243 41.667 10.38 0.00 0.00 4.41
157 158 4.910195 TGATTTTAGGTCTGACAGCACAT 58.090 39.130 10.38 0.00 0.00 3.21
158 159 4.696877 TGATTTTAGGTCTGACAGCACATG 59.303 41.667 10.38 0.00 0.00 3.21
160 161 4.558226 TTTAGGTCTGACAGCACATGAT 57.442 40.909 10.38 0.00 0.00 2.45
161 162 4.558226 TTAGGTCTGACAGCACATGATT 57.442 40.909 10.38 0.00 0.00 2.57
162 163 3.430042 AGGTCTGACAGCACATGATTT 57.570 42.857 10.38 0.00 0.00 2.17
163 164 3.341823 AGGTCTGACAGCACATGATTTC 58.658 45.455 10.38 0.00 0.00 2.17
165 166 3.126514 GGTCTGACAGCACATGATTTCAG 59.873 47.826 10.38 6.91 33.11 3.02
167 168 4.214971 GTCTGACAGCACATGATTTCAGTT 59.785 41.667 11.79 0.00 33.42 3.16
168 169 4.214758 TCTGACAGCACATGATTTCAGTTG 59.785 41.667 11.79 0.00 33.42 3.16
169 170 3.253921 TGACAGCACATGATTTCAGTTGG 59.746 43.478 0.00 0.00 0.00 3.77
170 171 2.029649 ACAGCACATGATTTCAGTTGGC 60.030 45.455 0.00 0.00 0.00 4.52
171 172 2.230508 CAGCACATGATTTCAGTTGGCT 59.769 45.455 0.00 0.00 0.00 4.75
172 173 2.490903 AGCACATGATTTCAGTTGGCTC 59.509 45.455 0.00 0.00 0.00 4.70
173 174 2.490903 GCACATGATTTCAGTTGGCTCT 59.509 45.455 0.00 0.00 0.00 4.09
174 175 3.427233 GCACATGATTTCAGTTGGCTCTC 60.427 47.826 0.00 0.00 0.00 3.20
177 491 5.014858 ACATGATTTCAGTTGGCTCTCAAT 58.985 37.500 0.00 0.00 37.73 2.57
195 509 7.838771 TCTCAATGAGCATATATACATGTGC 57.161 36.000 9.11 1.62 46.51 4.57
206 3630 5.734855 ATATACATGTGCCGAACTCAAAC 57.265 39.130 9.11 0.00 0.00 2.93
209 3633 3.674997 ACATGTGCCGAACTCAAACTAT 58.325 40.909 0.00 0.00 0.00 2.12
252 3676 5.964958 TCTAAGTGGATTTTTGGAAGCTG 57.035 39.130 0.00 0.00 0.00 4.24
253 3677 4.766891 TCTAAGTGGATTTTTGGAAGCTGG 59.233 41.667 0.00 0.00 0.00 4.85
254 3678 2.250924 AGTGGATTTTTGGAAGCTGGG 58.749 47.619 0.00 0.00 0.00 4.45
255 3679 1.970640 GTGGATTTTTGGAAGCTGGGT 59.029 47.619 0.00 0.00 0.00 4.51
256 3680 1.969923 TGGATTTTTGGAAGCTGGGTG 59.030 47.619 0.00 0.00 0.00 4.61
257 3681 1.970640 GGATTTTTGGAAGCTGGGTGT 59.029 47.619 0.00 0.00 0.00 4.16
258 3682 3.161866 GGATTTTTGGAAGCTGGGTGTA 58.838 45.455 0.00 0.00 0.00 2.90
259 3683 3.769300 GGATTTTTGGAAGCTGGGTGTAT 59.231 43.478 0.00 0.00 0.00 2.29
260 3684 4.222810 GGATTTTTGGAAGCTGGGTGTATT 59.777 41.667 0.00 0.00 0.00 1.89
261 3685 4.599047 TTTTTGGAAGCTGGGTGTATTG 57.401 40.909 0.00 0.00 0.00 1.90
262 3686 2.214376 TTGGAAGCTGGGTGTATTGG 57.786 50.000 0.00 0.00 0.00 3.16
263 3687 1.367346 TGGAAGCTGGGTGTATTGGA 58.633 50.000 0.00 0.00 0.00 3.53
264 3688 1.281867 TGGAAGCTGGGTGTATTGGAG 59.718 52.381 0.00 0.00 0.00 3.86
265 3689 1.408822 GGAAGCTGGGTGTATTGGAGG 60.409 57.143 0.00 0.00 0.00 4.30
266 3690 1.559682 GAAGCTGGGTGTATTGGAGGA 59.440 52.381 0.00 0.00 0.00 3.71
267 3691 0.912486 AGCTGGGTGTATTGGAGGAC 59.088 55.000 0.00 0.00 0.00 3.85
268 3692 0.107165 GCTGGGTGTATTGGAGGACC 60.107 60.000 0.00 0.00 0.00 4.46
269 3693 1.584724 CTGGGTGTATTGGAGGACCT 58.415 55.000 0.00 0.00 37.04 3.85
270 3694 1.916181 CTGGGTGTATTGGAGGACCTT 59.084 52.381 0.00 0.00 37.04 3.50
271 3695 3.112263 CTGGGTGTATTGGAGGACCTTA 58.888 50.000 0.00 0.00 37.04 2.69
272 3696 3.716872 CTGGGTGTATTGGAGGACCTTAT 59.283 47.826 0.00 0.00 37.04 1.73
273 3697 4.116113 TGGGTGTATTGGAGGACCTTATT 58.884 43.478 0.00 0.00 37.04 1.40
274 3698 4.542525 TGGGTGTATTGGAGGACCTTATTT 59.457 41.667 0.00 0.00 37.04 1.40
275 3699 5.015817 TGGGTGTATTGGAGGACCTTATTTT 59.984 40.000 0.00 0.00 37.04 1.82
276 3700 6.217900 TGGGTGTATTGGAGGACCTTATTTTA 59.782 38.462 0.00 0.00 37.04 1.52
277 3701 7.120716 GGGTGTATTGGAGGACCTTATTTTAA 58.879 38.462 0.00 0.00 37.04 1.52
278 3702 7.616542 GGGTGTATTGGAGGACCTTATTTTAAA 59.383 37.037 0.00 0.00 37.04 1.52
279 3703 9.197306 GGTGTATTGGAGGACCTTATTTTAAAT 57.803 33.333 0.00 0.00 37.04 1.40
328 3752 5.839262 AAAAATTCCGAAAAGAATTCCGC 57.161 34.783 0.65 0.00 43.90 5.54
329 3753 2.825086 ATTCCGAAAAGAATTCCGCG 57.175 45.000 0.00 0.00 32.46 6.46
330 3754 1.515081 TTCCGAAAAGAATTCCGCGT 58.485 45.000 4.92 0.00 0.00 6.01
331 3755 0.793861 TCCGAAAAGAATTCCGCGTG 59.206 50.000 4.92 0.00 0.00 5.34
332 3756 0.515564 CCGAAAAGAATTCCGCGTGT 59.484 50.000 4.92 0.00 0.00 4.49
333 3757 1.069500 CCGAAAAGAATTCCGCGTGTT 60.069 47.619 4.92 0.00 0.00 3.32
334 3758 2.603652 CCGAAAAGAATTCCGCGTGTTT 60.604 45.455 4.92 0.00 0.00 2.83
335 3759 3.364167 CCGAAAAGAATTCCGCGTGTTTA 60.364 43.478 4.92 0.00 0.00 2.01
336 3760 4.399978 CGAAAAGAATTCCGCGTGTTTAT 58.600 39.130 4.92 0.00 0.00 1.40
337 3761 5.446206 CCGAAAAGAATTCCGCGTGTTTATA 60.446 40.000 4.92 0.00 0.00 0.98
338 3762 6.189567 CGAAAAGAATTCCGCGTGTTTATAT 58.810 36.000 4.92 0.00 0.00 0.86
339 3763 6.138546 CGAAAAGAATTCCGCGTGTTTATATG 59.861 38.462 4.92 0.00 0.00 1.78
340 3764 6.431198 AAAGAATTCCGCGTGTTTATATGT 57.569 33.333 4.92 0.00 0.00 2.29
341 3765 7.542534 AAAGAATTCCGCGTGTTTATATGTA 57.457 32.000 4.92 0.00 0.00 2.29
342 3766 7.724305 AAGAATTCCGCGTGTTTATATGTAT 57.276 32.000 4.92 0.00 0.00 2.29
343 3767 7.117241 AGAATTCCGCGTGTTTATATGTATG 57.883 36.000 4.92 0.00 0.00 2.39
344 3768 6.704493 AGAATTCCGCGTGTTTATATGTATGT 59.296 34.615 4.92 0.00 0.00 2.29
345 3769 7.868922 AGAATTCCGCGTGTTTATATGTATGTA 59.131 33.333 4.92 0.00 0.00 2.29
346 3770 6.752335 TTCCGCGTGTTTATATGTATGTAC 57.248 37.500 4.92 0.00 0.00 2.90
347 3771 6.075762 TCCGCGTGTTTATATGTATGTACT 57.924 37.500 4.92 0.00 0.00 2.73
348 3772 6.144854 TCCGCGTGTTTATATGTATGTACTC 58.855 40.000 4.92 0.00 0.00 2.59
349 3773 5.916320 CCGCGTGTTTATATGTATGTACTCA 59.084 40.000 4.92 0.00 0.00 3.41
350 3774 6.584942 CCGCGTGTTTATATGTATGTACTCAT 59.415 38.462 4.92 0.00 38.00 2.90
351 3775 7.115805 CCGCGTGTTTATATGTATGTACTCATT 59.884 37.037 4.92 0.00 35.70 2.57
352 3776 8.154038 CGCGTGTTTATATGTATGTACTCATTC 58.846 37.037 0.00 0.00 35.70 2.67
353 3777 8.433126 GCGTGTTTATATGTATGTACTCATTCC 58.567 37.037 0.00 0.00 35.70 3.01
354 3778 8.635983 CGTGTTTATATGTATGTACTCATTCCG 58.364 37.037 0.00 0.00 35.70 4.30
355 3779 8.922676 GTGTTTATATGTATGTACTCATTCCGG 58.077 37.037 0.00 0.00 35.70 5.14
356 3780 8.644216 TGTTTATATGTATGTACTCATTCCGGT 58.356 33.333 0.00 0.00 35.70 5.28
357 3781 9.136952 GTTTATATGTATGTACTCATTCCGGTC 57.863 37.037 0.00 0.00 35.70 4.79
358 3782 4.602340 ATGTATGTACTCATTCCGGTCC 57.398 45.455 0.00 0.00 35.70 4.46
359 3783 3.638860 TGTATGTACTCATTCCGGTCCT 58.361 45.455 0.00 0.00 35.70 3.85
360 3784 4.028131 TGTATGTACTCATTCCGGTCCTT 58.972 43.478 0.00 0.00 35.70 3.36
361 3785 4.468510 TGTATGTACTCATTCCGGTCCTTT 59.531 41.667 0.00 0.00 35.70 3.11
362 3786 4.569719 ATGTACTCATTCCGGTCCTTTT 57.430 40.909 0.00 0.00 0.00 2.27
363 3787 4.360951 TGTACTCATTCCGGTCCTTTTT 57.639 40.909 0.00 0.00 0.00 1.94
364 3788 4.069304 TGTACTCATTCCGGTCCTTTTTG 58.931 43.478 0.00 0.00 0.00 2.44
365 3789 1.886542 ACTCATTCCGGTCCTTTTTGC 59.113 47.619 0.00 0.00 0.00 3.68
366 3790 2.162681 CTCATTCCGGTCCTTTTTGCT 58.837 47.619 0.00 0.00 0.00 3.91
367 3791 2.159382 TCATTCCGGTCCTTTTTGCTC 58.841 47.619 0.00 0.00 0.00 4.26
368 3792 2.162681 CATTCCGGTCCTTTTTGCTCT 58.837 47.619 0.00 0.00 0.00 4.09
369 3793 1.604604 TTCCGGTCCTTTTTGCTCTG 58.395 50.000 0.00 0.00 0.00 3.35
370 3794 0.889186 TCCGGTCCTTTTTGCTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
371 3795 1.172180 CCGGTCCTTTTTGCTCTGCA 61.172 55.000 0.00 0.00 36.47 4.41
372 3796 0.883833 CGGTCCTTTTTGCTCTGCAT 59.116 50.000 0.00 0.00 38.76 3.96
373 3797 2.083774 CGGTCCTTTTTGCTCTGCATA 58.916 47.619 0.00 0.00 38.76 3.14
374 3798 2.684881 CGGTCCTTTTTGCTCTGCATAT 59.315 45.455 0.00 0.00 38.76 1.78
375 3799 3.876914 CGGTCCTTTTTGCTCTGCATATA 59.123 43.478 0.00 0.00 38.76 0.86
376 3800 4.335315 CGGTCCTTTTTGCTCTGCATATAA 59.665 41.667 0.00 0.00 38.76 0.98
377 3801 5.504665 CGGTCCTTTTTGCTCTGCATATAAG 60.505 44.000 0.00 0.00 38.76 1.73
378 3802 5.590259 GGTCCTTTTTGCTCTGCATATAAGA 59.410 40.000 0.00 0.00 38.76 2.10
379 3803 6.095440 GGTCCTTTTTGCTCTGCATATAAGAA 59.905 38.462 0.00 0.00 38.76 2.52
380 3804 7.201857 GGTCCTTTTTGCTCTGCATATAAGAAT 60.202 37.037 0.00 0.00 38.76 2.40
381 3805 8.193438 GTCCTTTTTGCTCTGCATATAAGAATT 58.807 33.333 0.00 0.00 38.76 2.17
382 3806 8.192774 TCCTTTTTGCTCTGCATATAAGAATTG 58.807 33.333 0.00 0.00 38.76 2.32
383 3807 7.977853 CCTTTTTGCTCTGCATATAAGAATTGT 59.022 33.333 0.00 0.00 38.76 2.71
384 3808 8.915871 TTTTTGCTCTGCATATAAGAATTGTC 57.084 30.769 0.00 0.00 38.76 3.18
385 3809 7.870509 TTTGCTCTGCATATAAGAATTGTCT 57.129 32.000 0.00 0.00 38.76 3.41
386 3810 6.856135 TGCTCTGCATATAAGAATTGTCTG 57.144 37.500 0.00 0.00 30.61 3.51
387 3811 6.585416 TGCTCTGCATATAAGAATTGTCTGA 58.415 36.000 0.00 0.00 30.61 3.27
388 3812 7.049754 TGCTCTGCATATAAGAATTGTCTGAA 58.950 34.615 0.00 0.00 30.61 3.02
389 3813 7.226128 TGCTCTGCATATAAGAATTGTCTGAAG 59.774 37.037 0.00 0.00 30.61 3.02
390 3814 7.226325 GCTCTGCATATAAGAATTGTCTGAAGT 59.774 37.037 0.00 0.00 33.05 3.01
391 3815 8.654230 TCTGCATATAAGAATTGTCTGAAGTC 57.346 34.615 0.00 0.00 33.05 3.01
392 3816 8.260114 TCTGCATATAAGAATTGTCTGAAGTCA 58.740 33.333 0.00 0.00 33.05 3.41
393 3817 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
394 3818 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
395 3819 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
452 3876 8.915057 AATATCAACATCTAGCATGCTAAAGT 57.085 30.769 26.71 20.87 0.00 2.66
453 3877 8.915057 ATATCAACATCTAGCATGCTAAAGTT 57.085 30.769 26.71 24.52 0.00 2.66
455 3879 8.915057 ATCAACATCTAGCATGCTAAAGTTAT 57.085 30.769 26.71 18.58 0.00 1.89
488 3912 9.891828 TGAAAATTAAAGTCATGACACATGTAC 57.108 29.630 27.02 10.95 0.00 2.90
490 3914 9.897744 AAAATTAAAGTCATGACACATGTACTG 57.102 29.630 27.02 0.00 0.00 2.74
491 3915 8.846943 AATTAAAGTCATGACACATGTACTGA 57.153 30.769 27.02 0.00 0.00 3.41
492 3916 9.453572 AATTAAAGTCATGACACATGTACTGAT 57.546 29.630 27.02 0.00 0.00 2.90
496 3920 9.453572 AAAGTCATGACACATGTACTGATATTT 57.546 29.630 27.02 10.69 0.00 1.40
557 3981 8.752766 ATGTTGATCAAACTTTAAGATGCTTG 57.247 30.769 10.35 0.00 39.70 4.01
558 3982 7.939782 TGTTGATCAAACTTTAAGATGCTTGA 58.060 30.769 10.35 2.99 39.70 3.02
559 3983 7.862372 TGTTGATCAAACTTTAAGATGCTTGAC 59.138 33.333 10.35 0.00 39.70 3.18
560 3984 7.750229 TGATCAAACTTTAAGATGCTTGACT 57.250 32.000 0.00 0.00 0.00 3.41
561 3985 8.169977 TGATCAAACTTTAAGATGCTTGACTT 57.830 30.769 0.00 0.00 0.00 3.01
562 3986 8.632679 TGATCAAACTTTAAGATGCTTGACTTT 58.367 29.630 0.00 0.00 0.00 2.66
565 3989 9.337396 TCAAACTTTAAGATGCTTGACTTTAGA 57.663 29.630 0.00 0.00 0.00 2.10
566 3990 9.387123 CAAACTTTAAGATGCTTGACTTTAGAC 57.613 33.333 0.00 0.00 0.00 2.59
567 3991 8.677148 AACTTTAAGATGCTTGACTTTAGACA 57.323 30.769 0.00 0.00 0.00 3.41
568 3992 8.677148 ACTTTAAGATGCTTGACTTTAGACAA 57.323 30.769 0.00 0.00 0.00 3.18
569 3993 9.120538 ACTTTAAGATGCTTGACTTTAGACAAA 57.879 29.630 0.00 0.00 30.22 2.83
572 3996 7.992754 AAGATGCTTGACTTTAGACAAATCT 57.007 32.000 4.44 4.44 39.15 2.40
573 3997 7.992754 AGATGCTTGACTTTAGACAAATCTT 57.007 32.000 4.44 0.00 36.29 2.40
574 3998 9.507329 AAGATGCTTGACTTTAGACAAATCTTA 57.493 29.630 14.46 0.00 36.50 2.10
575 3999 9.678260 AGATGCTTGACTTTAGACAAATCTTAT 57.322 29.630 4.44 0.00 36.29 1.73
579 4003 9.657121 GCTTGACTTTAGACAAATCTTATATGC 57.343 33.333 0.00 0.00 36.29 3.14
580 4004 9.855361 CTTGACTTTAGACAAATCTTATATGCG 57.145 33.333 0.00 0.00 36.29 4.73
581 4005 9.594478 TTGACTTTAGACAAATCTTATATGCGA 57.406 29.630 0.00 0.00 36.29 5.10
582 4006 9.594478 TGACTTTAGACAAATCTTATATGCGAA 57.406 29.630 0.00 0.00 36.29 4.70
583 4007 9.851043 GACTTTAGACAAATCTTATATGCGAAC 57.149 33.333 0.00 0.00 36.29 3.95
584 4008 9.601217 ACTTTAGACAAATCTTATATGCGAACT 57.399 29.630 0.00 0.00 36.29 3.01
595 4019 8.294341 TCTTATATGCGAACTAAAAAGATCCG 57.706 34.615 0.00 0.00 0.00 4.18
596 4020 5.924475 ATATGCGAACTAAAAAGATCCGG 57.076 39.130 0.00 0.00 0.00 5.14
597 4021 3.322211 TGCGAACTAAAAAGATCCGGA 57.678 42.857 6.61 6.61 0.00 5.14
598 4022 3.259064 TGCGAACTAAAAAGATCCGGAG 58.741 45.455 11.34 0.00 0.00 4.63
618 4042 7.406031 CGGAGGGAGTATATTACATATGTGT 57.594 40.000 18.81 9.42 42.39 3.72
619 4043 8.515695 CGGAGGGAGTATATTACATATGTGTA 57.484 38.462 18.81 11.26 39.77 2.90
652 4076 8.236586 TGTGATGAAATAAGTAAACATGTGAGC 58.763 33.333 0.00 0.00 0.00 4.26
653 4077 8.454106 GTGATGAAATAAGTAAACATGTGAGCT 58.546 33.333 0.00 0.00 0.00 4.09
654 4078 9.665719 TGATGAAATAAGTAAACATGTGAGCTA 57.334 29.630 0.00 0.00 0.00 3.32
657 4081 8.397906 TGAAATAAGTAAACATGTGAGCTATGC 58.602 33.333 0.00 0.00 0.00 3.14
658 4082 7.864108 AATAAGTAAACATGTGAGCTATGCA 57.136 32.000 0.00 0.00 0.00 3.96
659 4083 7.864108 ATAAGTAAACATGTGAGCTATGCAA 57.136 32.000 0.00 0.00 0.00 4.08
660 4084 6.573664 AAGTAAACATGTGAGCTATGCAAA 57.426 33.333 0.00 0.00 0.00 3.68
661 4085 6.573664 AGTAAACATGTGAGCTATGCAAAA 57.426 33.333 0.00 0.00 0.00 2.44
662 4086 7.161773 AGTAAACATGTGAGCTATGCAAAAT 57.838 32.000 0.00 0.00 0.00 1.82
663 4087 7.605449 AGTAAACATGTGAGCTATGCAAAATT 58.395 30.769 0.00 0.00 0.00 1.82
664 4088 6.715344 AAACATGTGAGCTATGCAAAATTG 57.285 33.333 0.00 0.00 0.00 2.32
665 4089 5.648178 ACATGTGAGCTATGCAAAATTGA 57.352 34.783 0.00 0.00 0.00 2.57
666 4090 5.404946 ACATGTGAGCTATGCAAAATTGAC 58.595 37.500 0.00 0.00 0.00 3.18
667 4091 5.047872 ACATGTGAGCTATGCAAAATTGACA 60.048 36.000 0.00 0.00 0.00 3.58
668 4092 5.450592 TGTGAGCTATGCAAAATTGACAA 57.549 34.783 0.00 0.00 0.00 3.18
669 4093 5.840715 TGTGAGCTATGCAAAATTGACAAA 58.159 33.333 0.00 0.00 0.00 2.83
670 4094 6.279123 TGTGAGCTATGCAAAATTGACAAAA 58.721 32.000 0.00 0.00 0.00 2.44
671 4095 6.930164 TGTGAGCTATGCAAAATTGACAAAAT 59.070 30.769 0.00 0.00 0.00 1.82
672 4096 7.095565 TGTGAGCTATGCAAAATTGACAAAATG 60.096 33.333 0.00 0.00 0.00 2.32
673 4097 6.128499 TGAGCTATGCAAAATTGACAAAATGC 60.128 34.615 13.32 13.32 0.00 3.56
674 4098 5.935789 AGCTATGCAAAATTGACAAAATGCT 59.064 32.000 18.21 10.24 34.97 3.79
675 4099 6.019152 GCTATGCAAAATTGACAAAATGCTG 58.981 36.000 18.21 12.07 34.97 4.41
676 4100 6.128499 GCTATGCAAAATTGACAAAATGCTGA 60.128 34.615 18.21 9.40 34.97 4.26
677 4101 6.811253 ATGCAAAATTGACAAAATGCTGAT 57.189 29.167 18.21 7.19 34.97 2.90
678 4102 6.621316 TGCAAAATTGACAAAATGCTGATT 57.379 29.167 18.21 0.00 34.97 2.57
679 4103 7.028926 TGCAAAATTGACAAAATGCTGATTT 57.971 28.000 18.21 0.66 34.97 2.17
680 4104 7.133513 TGCAAAATTGACAAAATGCTGATTTC 58.866 30.769 18.21 0.00 34.97 2.17
681 4105 6.579666 GCAAAATTGACAAAATGCTGATTTCC 59.420 34.615 13.07 0.00 30.02 3.13
682 4106 7.640852 CAAAATTGACAAAATGCTGATTTCCA 58.359 30.769 0.00 0.00 30.02 3.53
683 4107 7.804843 AAATTGACAAAATGCTGATTTCCAA 57.195 28.000 0.00 0.00 30.02 3.53
684 4108 7.804843 AATTGACAAAATGCTGATTTCCAAA 57.195 28.000 0.00 0.00 30.02 3.28
685 4109 7.989416 ATTGACAAAATGCTGATTTCCAAAT 57.011 28.000 0.00 0.00 30.02 2.32
686 4110 9.504708 AATTGACAAAATGCTGATTTCCAAATA 57.495 25.926 0.00 0.00 30.02 1.40
687 4111 8.537049 TTGACAAAATGCTGATTTCCAAATAG 57.463 30.769 0.00 0.00 30.02 1.73
688 4112 7.669427 TGACAAAATGCTGATTTCCAAATAGT 58.331 30.769 0.00 0.00 30.02 2.12
689 4113 7.814107 TGACAAAATGCTGATTTCCAAATAGTC 59.186 33.333 0.00 0.00 30.02 2.59
690 4114 7.669427 ACAAAATGCTGATTTCCAAATAGTCA 58.331 30.769 0.00 0.00 30.02 3.41
691 4115 8.149647 ACAAAATGCTGATTTCCAAATAGTCAA 58.850 29.630 0.00 0.00 30.02 3.18
692 4116 9.158233 CAAAATGCTGATTTCCAAATAGTCAAT 57.842 29.630 0.00 0.00 30.02 2.57
696 4120 9.976511 ATGCTGATTTCCAAATAGTCAATAATG 57.023 29.630 0.00 0.00 0.00 1.90
697 4121 7.922278 TGCTGATTTCCAAATAGTCAATAATGC 59.078 33.333 0.00 0.00 0.00 3.56
698 4122 7.922278 GCTGATTTCCAAATAGTCAATAATGCA 59.078 33.333 0.00 0.00 0.00 3.96
699 4123 9.976511 CTGATTTCCAAATAGTCAATAATGCAT 57.023 29.630 0.00 0.00 0.00 3.96
700 4124 9.752961 TGATTTCCAAATAGTCAATAATGCATG 57.247 29.630 0.00 0.00 0.00 4.06
701 4125 9.970395 GATTTCCAAATAGTCAATAATGCATGA 57.030 29.630 0.00 0.00 0.00 3.07
703 4127 9.585099 TTTCCAAATAGTCAATAATGCATGAAC 57.415 29.630 0.00 0.00 0.00 3.18
704 4128 8.523915 TCCAAATAGTCAATAATGCATGAACT 57.476 30.769 0.00 2.58 0.00 3.01
705 4129 9.625747 TCCAAATAGTCAATAATGCATGAACTA 57.374 29.630 0.00 4.80 0.00 2.24
706 4130 9.669353 CCAAATAGTCAATAATGCATGAACTAC 57.331 33.333 0.00 0.00 0.00 2.73
743 4167 4.427096 TCTAGACAGCTCTGACGAAAAG 57.573 45.455 3.60 0.00 0.00 2.27
755 4179 4.805719 TCTGACGAAAAGCAGCATGTATAG 59.194 41.667 0.00 0.00 39.31 1.31
757 4181 4.566759 TGACGAAAAGCAGCATGTATAGTC 59.433 41.667 0.00 0.00 39.31 2.59
772 4196 7.526860 GCATGTATAGTCCTGAAAGATGATCCT 60.527 40.741 0.00 0.00 34.07 3.24
823 4249 1.952296 CTAGGTGCTCAAATGGCATCC 59.048 52.381 0.00 0.00 41.27 3.51
824 4250 1.033746 AGGTGCTCAAATGGCATCCG 61.034 55.000 0.00 0.00 41.27 4.18
825 4251 1.226773 GTGCTCAAATGGCATCCGC 60.227 57.895 0.00 1.88 41.86 5.54
962 4415 2.045280 CCATCCTACTGCTCCCTCG 58.955 63.158 0.00 0.00 0.00 4.63
1031 4493 2.685380 CCTCTGAACCCGCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
1341 4803 4.724602 GCGTCACGGAGCTGCTCA 62.725 66.667 28.95 7.64 31.08 4.26
1545 5013 4.243008 TGGCGTGCCTGGACGAAA 62.243 61.111 15.47 0.00 42.10 3.46
1581 5049 2.281484 GGTTCAGCCTTGCCGACA 60.281 61.111 0.00 0.00 0.00 4.35
2274 5766 2.894240 GATTACGTTCGGGCTCGCCA 62.894 60.000 0.00 0.00 37.98 5.69
2279 5771 1.069090 GTTCGGGCTCGCCATCATA 59.931 57.895 0.00 0.00 37.98 2.15
2289 5781 1.006805 GCCATCATAGAGCTCGCGT 60.007 57.895 8.37 0.00 0.00 6.01
2453 5969 2.685388 GCCAGTTCTTTTGAGCTATCCC 59.315 50.000 0.00 0.00 37.94 3.85
2456 5972 3.619038 CAGTTCTTTTGAGCTATCCCGTC 59.381 47.826 0.00 0.00 37.94 4.79
2457 5973 2.937149 GTTCTTTTGAGCTATCCCGTCC 59.063 50.000 0.00 0.00 0.00 4.79
2469 5985 0.177141 TCCCGTCCAAATAAGCTCCG 59.823 55.000 0.00 0.00 0.00 4.63
2471 5987 0.814010 CCGTCCAAATAAGCTCCGGG 60.814 60.000 0.00 0.00 0.00 5.73
2481 5997 2.269241 GCTCCGGGTAAGCTTGCT 59.731 61.111 14.47 0.00 36.80 3.91
2488 6004 3.504520 TCCGGGTAAGCTTGCTTAAAAAG 59.495 43.478 15.51 8.41 0.00 2.27
2510 6026 9.467796 AAAAGAAGCTCCAAATAATAAGCTAGT 57.532 29.630 0.00 0.00 44.03 2.57
2512 6028 7.796054 AGAAGCTCCAAATAATAAGCTAGTCA 58.204 34.615 0.00 0.00 44.03 3.41
2527 6043 4.457257 AGCTAGTCAATTCTTTTCAGTGCC 59.543 41.667 0.00 0.00 0.00 5.01
2535 6051 9.691362 GTCAATTCTTTTCAGTGCCTATTTTTA 57.309 29.630 0.00 0.00 0.00 1.52
2561 6077 9.823647 ATCTTATTATCCGTGGTATGATCAATC 57.176 33.333 0.00 0.00 0.00 2.67
2566 6082 6.624352 ATCCGTGGTATGATCAATCAAAAG 57.376 37.500 0.00 0.00 40.69 2.27
2570 6086 6.761242 CCGTGGTATGATCAATCAAAAGTCTA 59.239 38.462 0.00 0.00 40.69 2.59
2647 6163 2.730550 GCATTTTGCTGCCTGTAACT 57.269 45.000 0.00 0.00 40.96 2.24
2648 6164 3.848272 GCATTTTGCTGCCTGTAACTA 57.152 42.857 0.00 0.00 40.96 2.24
2649 6165 4.173036 GCATTTTGCTGCCTGTAACTAA 57.827 40.909 0.00 0.00 40.96 2.24
2656 6172 4.002982 TGCTGCCTGTAACTAAGAACATG 58.997 43.478 0.00 0.00 0.00 3.21
2665 6181 7.545965 CCTGTAACTAAGAACATGAATTCGACT 59.454 37.037 0.00 0.00 33.57 4.18
2677 6193 5.568685 TGAATTCGACTTCAAAACACCAA 57.431 34.783 15.04 0.00 32.35 3.67
2679 6195 6.033341 TGAATTCGACTTCAAAACACCAAAG 58.967 36.000 15.04 0.00 32.35 2.77
2716 6232 9.958180 TCAAACATAAGGAAGATAATTGTCTGA 57.042 29.630 5.38 0.00 0.00 3.27
2741 6257 8.953368 ACATACGAATATCATACATGCATCAT 57.047 30.769 0.00 0.00 0.00 2.45
2742 6258 8.823818 ACATACGAATATCATACATGCATCATG 58.176 33.333 0.00 3.71 46.18 3.07
2872 6388 3.129813 AGCATACACACAAGCCATCAATG 59.870 43.478 0.00 0.00 0.00 2.82
2889 6405 7.254319 GCCATCAATGTTTCTTCTATGCAAATG 60.254 37.037 0.00 0.00 0.00 2.32
2924 6440 1.282157 AGAGGGCAACAATCCTGTACC 59.718 52.381 0.00 0.00 33.45 3.34
3042 6558 5.698089 CCGCTCATAGCAAATCTAGATGAAA 59.302 40.000 5.86 0.00 42.58 2.69
3043 6559 6.203530 CCGCTCATAGCAAATCTAGATGAAAA 59.796 38.462 5.86 0.00 42.58 2.29
3044 6560 7.254898 CCGCTCATAGCAAATCTAGATGAAAAA 60.255 37.037 5.86 0.00 42.58 1.94
3087 6604 2.436646 CTCATGGTCACGGCCACC 60.437 66.667 2.24 3.10 41.94 4.61
3367 6886 4.778579 AGAGAATGATGTGATGGACAAGG 58.221 43.478 0.00 0.00 38.36 3.61
3370 6889 0.697658 TGATGTGATGGACAAGGCCA 59.302 50.000 5.01 0.00 43.23 5.36
3424 6943 7.212274 AGTTTGTTGCTATTGCTTTCTTCATT 58.788 30.769 0.00 0.00 40.48 2.57
3588 7107 9.482627 GTTGACATAGATCGAGATTAGGATTTT 57.517 33.333 0.00 0.00 0.00 1.82
3614 7133 2.927028 TCGATTGTCGGAGAGGTATCA 58.073 47.619 0.00 0.00 40.88 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.338118 GGCGAAAATGAGATGGATTGGTAA 59.662 41.667 0.00 0.00 0.00 2.85
37 38 3.882888 GGCGAAAATGAGATGGATTGGTA 59.117 43.478 0.00 0.00 0.00 3.25
44 45 5.922544 GGATAATTTGGCGAAAATGAGATGG 59.077 40.000 0.00 0.00 38.52 3.51
51 52 9.665719 ATTAACAAAGGATAATTTGGCGAAAAT 57.334 25.926 0.00 0.00 43.10 1.82
82 83 8.469200 TGCTTGCAATTTTAGACAATTATAGCT 58.531 29.630 0.00 0.00 31.15 3.32
120 121 3.628646 ATCAAGTGGTGGCGAGCCC 62.629 63.158 12.05 2.94 34.56 5.19
121 122 1.244019 AAATCAAGTGGTGGCGAGCC 61.244 55.000 7.26 7.26 0.00 4.70
122 123 0.598065 AAAATCAAGTGGTGGCGAGC 59.402 50.000 0.00 0.00 0.00 5.03
124 125 2.224670 ACCTAAAATCAAGTGGTGGCGA 60.225 45.455 0.00 0.00 0.00 5.54
125 126 2.159382 ACCTAAAATCAAGTGGTGGCG 58.841 47.619 0.00 0.00 0.00 5.69
126 127 3.191371 CAGACCTAAAATCAAGTGGTGGC 59.809 47.826 0.00 0.00 0.00 5.01
127 128 4.455877 GTCAGACCTAAAATCAAGTGGTGG 59.544 45.833 0.00 0.00 0.00 4.61
129 130 5.304686 TGTCAGACCTAAAATCAAGTGGT 57.695 39.130 0.00 0.00 0.00 4.16
130 131 4.154918 GCTGTCAGACCTAAAATCAAGTGG 59.845 45.833 3.32 0.00 0.00 4.00
131 132 4.756642 TGCTGTCAGACCTAAAATCAAGTG 59.243 41.667 3.32 0.00 0.00 3.16
132 133 4.757149 GTGCTGTCAGACCTAAAATCAAGT 59.243 41.667 3.32 0.00 0.00 3.16
134 135 4.713553 TGTGCTGTCAGACCTAAAATCAA 58.286 39.130 3.32 0.00 0.00 2.57
135 136 4.350368 TGTGCTGTCAGACCTAAAATCA 57.650 40.909 3.32 0.00 0.00 2.57
138 139 4.350368 TCATGTGCTGTCAGACCTAAAA 57.650 40.909 3.32 0.00 0.00 1.52
139 140 4.558226 ATCATGTGCTGTCAGACCTAAA 57.442 40.909 3.32 0.00 0.00 1.85
141 142 4.020307 TGAAATCATGTGCTGTCAGACCTA 60.020 41.667 3.32 0.00 0.00 3.08
143 144 3.076621 TGAAATCATGTGCTGTCAGACC 58.923 45.455 3.32 0.00 0.00 3.85
144 145 3.750130 ACTGAAATCATGTGCTGTCAGAC 59.250 43.478 10.20 0.00 36.75 3.51
146 147 4.473199 CAACTGAAATCATGTGCTGTCAG 58.527 43.478 3.18 3.18 38.72 3.51
147 148 3.253921 CCAACTGAAATCATGTGCTGTCA 59.746 43.478 0.00 0.00 0.00 3.58
148 149 3.829948 CCAACTGAAATCATGTGCTGTC 58.170 45.455 0.00 0.00 0.00 3.51
149 150 2.029649 GCCAACTGAAATCATGTGCTGT 60.030 45.455 0.00 0.00 0.00 4.40
151 152 2.490903 GAGCCAACTGAAATCATGTGCT 59.509 45.455 0.00 0.00 0.00 4.40
153 154 3.754850 TGAGAGCCAACTGAAATCATGTG 59.245 43.478 0.00 0.00 0.00 3.21
154 155 4.025040 TGAGAGCCAACTGAAATCATGT 57.975 40.909 0.00 0.00 0.00 3.21
157 158 4.654915 TCATTGAGAGCCAACTGAAATCA 58.345 39.130 0.00 0.00 37.63 2.57
158 159 5.232610 CTCATTGAGAGCCAACTGAAATC 57.767 43.478 8.00 0.00 37.59 2.17
171 172 6.820152 GGCACATGTATATATGCTCATTGAGA 59.180 38.462 17.87 3.32 38.18 3.27
172 173 6.238022 CGGCACATGTATATATGCTCATTGAG 60.238 42.308 9.40 9.40 38.18 3.02
173 174 5.581874 CGGCACATGTATATATGCTCATTGA 59.418 40.000 9.21 0.00 38.18 2.57
174 175 5.581874 TCGGCACATGTATATATGCTCATTG 59.418 40.000 9.21 1.83 38.18 2.82
177 491 4.799564 TCGGCACATGTATATATGCTCA 57.200 40.909 9.21 0.00 38.18 4.26
191 505 3.991773 GTGTATAGTTTGAGTTCGGCACA 59.008 43.478 0.00 0.00 0.00 4.57
195 509 8.697846 TTCTTATGTGTATAGTTTGAGTTCGG 57.302 34.615 0.00 0.00 0.00 4.30
236 3660 1.969923 CACCCAGCTTCCAAAAATCCA 59.030 47.619 0.00 0.00 0.00 3.41
237 3661 1.970640 ACACCCAGCTTCCAAAAATCC 59.029 47.619 0.00 0.00 0.00 3.01
238 3662 5.170748 CAATACACCCAGCTTCCAAAAATC 58.829 41.667 0.00 0.00 0.00 2.17
240 3664 3.323403 CCAATACACCCAGCTTCCAAAAA 59.677 43.478 0.00 0.00 0.00 1.94
242 3666 2.109128 TCCAATACACCCAGCTTCCAAA 59.891 45.455 0.00 0.00 0.00 3.28
244 3668 1.281867 CTCCAATACACCCAGCTTCCA 59.718 52.381 0.00 0.00 0.00 3.53
245 3669 1.408822 CCTCCAATACACCCAGCTTCC 60.409 57.143 0.00 0.00 0.00 3.46
246 3670 1.559682 TCCTCCAATACACCCAGCTTC 59.440 52.381 0.00 0.00 0.00 3.86
249 3673 0.107165 GGTCCTCCAATACACCCAGC 60.107 60.000 0.00 0.00 0.00 4.85
252 3676 4.790718 AATAAGGTCCTCCAATACACCC 57.209 45.455 0.00 0.00 35.89 4.61
253 3677 8.584063 TTTAAAATAAGGTCCTCCAATACACC 57.416 34.615 0.00 0.00 35.89 4.16
306 3730 4.384547 CGCGGAATTCTTTTCGGAATTTTT 59.615 37.500 5.23 0.00 43.36 1.94
307 3731 3.917985 CGCGGAATTCTTTTCGGAATTTT 59.082 39.130 5.23 0.00 43.36 1.82
308 3732 3.057806 ACGCGGAATTCTTTTCGGAATTT 60.058 39.130 12.47 0.00 43.36 1.82
309 3733 2.486592 ACGCGGAATTCTTTTCGGAATT 59.513 40.909 12.47 2.65 45.19 2.17
310 3734 2.081462 ACGCGGAATTCTTTTCGGAAT 58.919 42.857 12.47 0.00 34.24 3.01
311 3735 1.195900 CACGCGGAATTCTTTTCGGAA 59.804 47.619 12.47 0.00 34.24 4.30
312 3736 0.793861 CACGCGGAATTCTTTTCGGA 59.206 50.000 12.47 0.00 34.24 4.55
313 3737 0.515564 ACACGCGGAATTCTTTTCGG 59.484 50.000 12.47 0.00 34.24 4.30
314 3738 2.309898 AACACGCGGAATTCTTTTCG 57.690 45.000 12.47 1.37 36.88 3.46
315 3739 6.964934 ACATATAAACACGCGGAATTCTTTTC 59.035 34.615 12.47 0.00 0.00 2.29
316 3740 6.848451 ACATATAAACACGCGGAATTCTTTT 58.152 32.000 12.47 1.23 0.00 2.27
317 3741 6.431198 ACATATAAACACGCGGAATTCTTT 57.569 33.333 12.47 0.00 0.00 2.52
318 3742 7.225931 ACATACATATAAACACGCGGAATTCTT 59.774 33.333 12.47 0.00 0.00 2.52
319 3743 6.704493 ACATACATATAAACACGCGGAATTCT 59.296 34.615 12.47 0.00 0.00 2.40
320 3744 6.884187 ACATACATATAAACACGCGGAATTC 58.116 36.000 12.47 0.00 0.00 2.17
321 3745 6.854496 ACATACATATAAACACGCGGAATT 57.146 33.333 12.47 4.26 0.00 2.17
322 3746 7.149973 AGTACATACATATAAACACGCGGAAT 58.850 34.615 12.47 0.00 0.00 3.01
323 3747 6.506147 AGTACATACATATAAACACGCGGAA 58.494 36.000 12.47 0.00 0.00 4.30
324 3748 6.075762 AGTACATACATATAAACACGCGGA 57.924 37.500 12.47 0.00 0.00 5.54
325 3749 5.916320 TGAGTACATACATATAAACACGCGG 59.084 40.000 12.47 1.27 0.00 6.46
326 3750 6.979701 TGAGTACATACATATAAACACGCG 57.020 37.500 3.53 3.53 0.00 6.01
327 3751 8.433126 GGAATGAGTACATACATATAAACACGC 58.567 37.037 0.00 0.00 35.50 5.34
328 3752 8.635983 CGGAATGAGTACATACATATAAACACG 58.364 37.037 0.00 0.00 35.50 4.49
329 3753 8.922676 CCGGAATGAGTACATACATATAAACAC 58.077 37.037 0.00 0.00 35.50 3.32
330 3754 8.644216 ACCGGAATGAGTACATACATATAAACA 58.356 33.333 9.46 0.00 35.50 2.83
331 3755 9.136952 GACCGGAATGAGTACATACATATAAAC 57.863 37.037 9.46 0.00 35.50 2.01
332 3756 8.308931 GGACCGGAATGAGTACATACATATAAA 58.691 37.037 9.46 0.00 35.50 1.40
333 3757 7.672660 AGGACCGGAATGAGTACATACATATAA 59.327 37.037 9.46 0.00 35.50 0.98
334 3758 7.179966 AGGACCGGAATGAGTACATACATATA 58.820 38.462 9.46 0.00 35.50 0.86
335 3759 6.017192 AGGACCGGAATGAGTACATACATAT 58.983 40.000 9.46 0.00 35.50 1.78
336 3760 5.391256 AGGACCGGAATGAGTACATACATA 58.609 41.667 9.46 0.00 35.50 2.29
337 3761 4.223953 AGGACCGGAATGAGTACATACAT 58.776 43.478 9.46 0.00 35.50 2.29
338 3762 3.638860 AGGACCGGAATGAGTACATACA 58.361 45.455 9.46 0.00 35.50 2.29
339 3763 4.667519 AAGGACCGGAATGAGTACATAC 57.332 45.455 9.46 0.00 35.50 2.39
340 3764 5.687166 AAAAGGACCGGAATGAGTACATA 57.313 39.130 9.46 0.00 35.50 2.29
341 3765 4.569719 AAAAGGACCGGAATGAGTACAT 57.430 40.909 9.46 0.00 38.50 2.29
342 3766 4.069304 CAAAAAGGACCGGAATGAGTACA 58.931 43.478 9.46 0.00 0.00 2.90
343 3767 3.119955 GCAAAAAGGACCGGAATGAGTAC 60.120 47.826 9.46 0.00 0.00 2.73
344 3768 3.078837 GCAAAAAGGACCGGAATGAGTA 58.921 45.455 9.46 0.00 0.00 2.59
345 3769 1.886542 GCAAAAAGGACCGGAATGAGT 59.113 47.619 9.46 0.00 0.00 3.41
346 3770 2.162408 GAGCAAAAAGGACCGGAATGAG 59.838 50.000 9.46 0.00 0.00 2.90
347 3771 2.159382 GAGCAAAAAGGACCGGAATGA 58.841 47.619 9.46 0.00 0.00 2.57
348 3772 2.095059 CAGAGCAAAAAGGACCGGAATG 60.095 50.000 9.46 0.00 0.00 2.67
349 3773 2.162681 CAGAGCAAAAAGGACCGGAAT 58.837 47.619 9.46 0.00 0.00 3.01
350 3774 1.604604 CAGAGCAAAAAGGACCGGAA 58.395 50.000 9.46 0.00 0.00 4.30
351 3775 0.889186 GCAGAGCAAAAAGGACCGGA 60.889 55.000 9.46 0.00 0.00 5.14
352 3776 1.172180 TGCAGAGCAAAAAGGACCGG 61.172 55.000 0.00 0.00 34.76 5.28
353 3777 0.883833 ATGCAGAGCAAAAAGGACCG 59.116 50.000 0.00 0.00 43.62 4.79
354 3778 5.590259 TCTTATATGCAGAGCAAAAAGGACC 59.410 40.000 0.00 0.00 43.62 4.46
355 3779 6.683974 TCTTATATGCAGAGCAAAAAGGAC 57.316 37.500 0.00 0.00 43.62 3.85
356 3780 7.886629 ATTCTTATATGCAGAGCAAAAAGGA 57.113 32.000 0.00 0.00 43.62 3.36
357 3781 7.977853 ACAATTCTTATATGCAGAGCAAAAAGG 59.022 33.333 0.00 0.00 43.62 3.11
358 3782 8.922058 ACAATTCTTATATGCAGAGCAAAAAG 57.078 30.769 0.00 0.98 43.62 2.27
359 3783 8.742777 AGACAATTCTTATATGCAGAGCAAAAA 58.257 29.630 0.00 0.00 43.62 1.94
360 3784 8.186163 CAGACAATTCTTATATGCAGAGCAAAA 58.814 33.333 0.00 0.00 43.62 2.44
361 3785 7.553760 TCAGACAATTCTTATATGCAGAGCAAA 59.446 33.333 0.00 0.00 43.62 3.68
362 3786 7.049754 TCAGACAATTCTTATATGCAGAGCAA 58.950 34.615 0.00 0.00 43.62 3.91
363 3787 6.585416 TCAGACAATTCTTATATGCAGAGCA 58.415 36.000 0.00 0.00 44.86 4.26
364 3788 7.226325 ACTTCAGACAATTCTTATATGCAGAGC 59.774 37.037 0.00 0.00 0.00 4.09
365 3789 8.659925 ACTTCAGACAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
366 3790 8.260114 TGACTTCAGACAATTCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
367 3791 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
368 3792 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
369 3793 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
426 3850 9.347240 ACTTTAGCATGCTAGATGTTGATATTT 57.653 29.630 25.56 0.00 0.00 1.40
427 3851 8.915057 ACTTTAGCATGCTAGATGTTGATATT 57.085 30.769 25.56 0.00 0.00 1.28
428 3852 8.915057 AACTTTAGCATGCTAGATGTTGATAT 57.085 30.769 25.56 9.08 0.00 1.63
430 3854 8.915057 ATAACTTTAGCATGCTAGATGTTGAT 57.085 30.769 30.46 22.39 0.00 2.57
462 3886 9.891828 GTACATGTGTCATGACTTTAATTTTCA 57.108 29.630 25.55 11.05 0.00 2.69
464 3888 9.897744 CAGTACATGTGTCATGACTTTAATTTT 57.102 29.630 25.55 4.73 0.00 1.82
465 3889 9.283768 TCAGTACATGTGTCATGACTTTAATTT 57.716 29.630 25.55 9.99 0.00 1.82
466 3890 8.846943 TCAGTACATGTGTCATGACTTTAATT 57.153 30.769 25.55 9.08 0.00 1.40
470 3894 9.453572 AAATATCAGTACATGTGTCATGACTTT 57.546 29.630 25.55 10.14 0.00 2.66
531 3955 9.199982 CAAGCATCTTAAAGTTTGATCAACATT 57.800 29.630 7.89 6.24 37.93 2.71
532 3956 8.579006 TCAAGCATCTTAAAGTTTGATCAACAT 58.421 29.630 7.89 0.00 37.93 2.71
533 3957 7.862372 GTCAAGCATCTTAAAGTTTGATCAACA 59.138 33.333 7.89 0.00 37.93 3.33
534 3958 8.078596 AGTCAAGCATCTTAAAGTTTGATCAAC 58.921 33.333 7.89 3.85 35.32 3.18
535 3959 8.169977 AGTCAAGCATCTTAAAGTTTGATCAA 57.830 30.769 3.38 3.38 0.00 2.57
536 3960 7.750229 AGTCAAGCATCTTAAAGTTTGATCA 57.250 32.000 0.00 0.00 0.00 2.92
539 3963 9.337396 TCTAAAGTCAAGCATCTTAAAGTTTGA 57.663 29.630 0.00 0.00 0.00 2.69
540 3964 9.387123 GTCTAAAGTCAAGCATCTTAAAGTTTG 57.613 33.333 0.00 0.00 0.00 2.93
541 3965 9.120538 TGTCTAAAGTCAAGCATCTTAAAGTTT 57.879 29.630 0.00 0.00 0.00 2.66
542 3966 8.677148 TGTCTAAAGTCAAGCATCTTAAAGTT 57.323 30.769 0.00 0.00 0.00 2.66
543 3967 8.677148 TTGTCTAAAGTCAAGCATCTTAAAGT 57.323 30.769 0.00 0.00 0.00 2.66
546 3970 9.507329 AGATTTGTCTAAAGTCAAGCATCTTAA 57.493 29.630 0.00 0.00 0.00 1.85
547 3971 9.507329 AAGATTTGTCTAAAGTCAAGCATCTTA 57.493 29.630 11.69 0.00 33.35 2.10
548 3972 7.992754 AGATTTGTCTAAAGTCAAGCATCTT 57.007 32.000 0.00 0.00 0.00 2.40
549 3973 7.992754 AAGATTTGTCTAAAGTCAAGCATCT 57.007 32.000 0.00 0.98 28.90 2.90
553 3977 9.657121 GCATATAAGATTTGTCTAAAGTCAAGC 57.343 33.333 0.00 0.00 0.00 4.01
554 3978 9.855361 CGCATATAAGATTTGTCTAAAGTCAAG 57.145 33.333 0.00 0.00 0.00 3.02
555 3979 9.594478 TCGCATATAAGATTTGTCTAAAGTCAA 57.406 29.630 0.00 0.00 0.00 3.18
556 3980 9.594478 TTCGCATATAAGATTTGTCTAAAGTCA 57.406 29.630 0.00 0.00 0.00 3.41
557 3981 9.851043 GTTCGCATATAAGATTTGTCTAAAGTC 57.149 33.333 0.00 0.00 0.00 3.01
558 3982 9.601217 AGTTCGCATATAAGATTTGTCTAAAGT 57.399 29.630 0.00 0.00 0.00 2.66
569 3993 8.926710 CGGATCTTTTTAGTTCGCATATAAGAT 58.073 33.333 0.00 0.00 34.72 2.40
570 3994 7.384115 CCGGATCTTTTTAGTTCGCATATAAGA 59.616 37.037 0.00 0.00 0.00 2.10
571 3995 7.384115 TCCGGATCTTTTTAGTTCGCATATAAG 59.616 37.037 0.00 0.00 0.00 1.73
572 3996 7.211573 TCCGGATCTTTTTAGTTCGCATATAA 58.788 34.615 0.00 0.00 0.00 0.98
573 3997 6.751157 TCCGGATCTTTTTAGTTCGCATATA 58.249 36.000 0.00 0.00 0.00 0.86
574 3998 5.607477 TCCGGATCTTTTTAGTTCGCATAT 58.393 37.500 0.00 0.00 0.00 1.78
575 3999 5.013568 TCCGGATCTTTTTAGTTCGCATA 57.986 39.130 0.00 0.00 0.00 3.14
576 4000 3.869065 TCCGGATCTTTTTAGTTCGCAT 58.131 40.909 0.00 0.00 0.00 4.73
577 4001 3.259064 CTCCGGATCTTTTTAGTTCGCA 58.741 45.455 3.57 0.00 0.00 5.10
578 4002 2.608090 CCTCCGGATCTTTTTAGTTCGC 59.392 50.000 3.57 0.00 0.00 4.70
579 4003 3.118884 TCCCTCCGGATCTTTTTAGTTCG 60.119 47.826 3.57 0.00 31.13 3.95
580 4004 4.081031 ACTCCCTCCGGATCTTTTTAGTTC 60.081 45.833 3.57 0.00 37.60 3.01
581 4005 3.844804 ACTCCCTCCGGATCTTTTTAGTT 59.155 43.478 3.57 0.00 37.60 2.24
582 4006 3.451890 ACTCCCTCCGGATCTTTTTAGT 58.548 45.455 3.57 0.00 37.60 2.24
583 4007 5.810080 ATACTCCCTCCGGATCTTTTTAG 57.190 43.478 3.57 0.00 37.60 1.85
584 4008 7.867160 AATATACTCCCTCCGGATCTTTTTA 57.133 36.000 3.57 0.00 37.60 1.52
585 4009 6.765355 AATATACTCCCTCCGGATCTTTTT 57.235 37.500 3.57 0.00 37.60 1.94
586 4010 6.785963 TGTAATATACTCCCTCCGGATCTTTT 59.214 38.462 3.57 0.00 37.60 2.27
587 4011 6.320518 TGTAATATACTCCCTCCGGATCTTT 58.679 40.000 3.57 0.00 37.60 2.52
588 4012 5.900437 TGTAATATACTCCCTCCGGATCTT 58.100 41.667 3.57 0.00 37.60 2.40
589 4013 5.531753 TGTAATATACTCCCTCCGGATCT 57.468 43.478 3.57 0.00 37.60 2.75
590 4014 7.506261 ACATATGTAATATACTCCCTCCGGATC 59.494 40.741 3.57 0.00 37.44 3.36
591 4015 7.287927 CACATATGTAATATACTCCCTCCGGAT 59.712 40.741 3.57 0.00 37.44 4.18
592 4016 6.605995 CACATATGTAATATACTCCCTCCGGA 59.394 42.308 8.32 2.93 37.44 5.14
593 4017 6.380274 ACACATATGTAATATACTCCCTCCGG 59.620 42.308 8.32 0.00 37.44 5.14
594 4018 7.406031 ACACATATGTAATATACTCCCTCCG 57.594 40.000 8.32 0.00 37.44 4.63
626 4050 8.236586 GCTCACATGTTTACTTATTTCATCACA 58.763 33.333 0.00 0.00 0.00 3.58
627 4051 8.454106 AGCTCACATGTTTACTTATTTCATCAC 58.546 33.333 0.00 0.00 0.00 3.06
628 4052 8.565896 AGCTCACATGTTTACTTATTTCATCA 57.434 30.769 0.00 0.00 0.00 3.07
631 4055 8.397906 GCATAGCTCACATGTTTACTTATTTCA 58.602 33.333 0.00 0.00 0.00 2.69
632 4056 8.397906 TGCATAGCTCACATGTTTACTTATTTC 58.602 33.333 0.00 0.00 0.00 2.17
633 4057 8.279970 TGCATAGCTCACATGTTTACTTATTT 57.720 30.769 0.00 0.00 0.00 1.40
634 4058 7.864108 TGCATAGCTCACATGTTTACTTATT 57.136 32.000 0.00 0.00 0.00 1.40
635 4059 7.864108 TTGCATAGCTCACATGTTTACTTAT 57.136 32.000 0.00 0.00 0.00 1.73
636 4060 7.680442 TTTGCATAGCTCACATGTTTACTTA 57.320 32.000 0.00 0.00 0.00 2.24
637 4061 6.573664 TTTGCATAGCTCACATGTTTACTT 57.426 33.333 0.00 0.00 0.00 2.24
638 4062 6.573664 TTTTGCATAGCTCACATGTTTACT 57.426 33.333 0.00 0.00 0.00 2.24
639 4063 7.541783 TCAATTTTGCATAGCTCACATGTTTAC 59.458 33.333 0.00 0.00 0.00 2.01
640 4064 7.541783 GTCAATTTTGCATAGCTCACATGTTTA 59.458 33.333 0.00 0.00 0.00 2.01
641 4065 6.366877 GTCAATTTTGCATAGCTCACATGTTT 59.633 34.615 0.00 0.00 0.00 2.83
642 4066 5.865552 GTCAATTTTGCATAGCTCACATGTT 59.134 36.000 0.00 0.00 0.00 2.71
643 4067 5.047872 TGTCAATTTTGCATAGCTCACATGT 60.048 36.000 0.00 0.00 0.00 3.21
644 4068 5.404096 TGTCAATTTTGCATAGCTCACATG 58.596 37.500 0.00 0.00 0.00 3.21
645 4069 5.648178 TGTCAATTTTGCATAGCTCACAT 57.352 34.783 0.00 0.00 0.00 3.21
646 4070 5.450592 TTGTCAATTTTGCATAGCTCACA 57.549 34.783 0.00 0.00 0.00 3.58
647 4071 6.768029 TTTTGTCAATTTTGCATAGCTCAC 57.232 33.333 0.00 0.00 0.00 3.51
648 4072 6.128499 GCATTTTGTCAATTTTGCATAGCTCA 60.128 34.615 0.00 0.00 0.00 4.26
649 4073 6.091713 AGCATTTTGTCAATTTTGCATAGCTC 59.908 34.615 13.93 0.00 32.66 4.09
650 4074 5.935789 AGCATTTTGTCAATTTTGCATAGCT 59.064 32.000 13.93 0.00 32.66 3.32
651 4075 6.019152 CAGCATTTTGTCAATTTTGCATAGC 58.981 36.000 13.93 0.00 32.66 2.97
652 4076 7.354025 TCAGCATTTTGTCAATTTTGCATAG 57.646 32.000 13.93 6.65 32.66 2.23
653 4077 7.908827 ATCAGCATTTTGTCAATTTTGCATA 57.091 28.000 13.93 5.33 32.66 3.14
654 4078 6.811253 ATCAGCATTTTGTCAATTTTGCAT 57.189 29.167 13.93 1.97 32.66 3.96
655 4079 6.621316 AATCAGCATTTTGTCAATTTTGCA 57.379 29.167 13.93 0.00 32.66 4.08
656 4080 6.579666 GGAAATCAGCATTTTGTCAATTTTGC 59.420 34.615 6.74 6.74 31.94 3.68
657 4081 7.640852 TGGAAATCAGCATTTTGTCAATTTTG 58.359 30.769 0.00 0.00 31.94 2.44
658 4082 7.804843 TGGAAATCAGCATTTTGTCAATTTT 57.195 28.000 0.00 0.00 31.94 1.82
659 4083 7.804843 TTGGAAATCAGCATTTTGTCAATTT 57.195 28.000 0.00 0.00 31.94 1.82
660 4084 7.804843 TTTGGAAATCAGCATTTTGTCAATT 57.195 28.000 0.00 0.00 31.94 2.32
661 4085 7.989416 ATTTGGAAATCAGCATTTTGTCAAT 57.011 28.000 0.00 0.00 31.94 2.57
662 4086 8.149647 ACTATTTGGAAATCAGCATTTTGTCAA 58.850 29.630 0.00 0.00 31.94 3.18
663 4087 7.669427 ACTATTTGGAAATCAGCATTTTGTCA 58.331 30.769 0.00 0.00 31.94 3.58
664 4088 7.814107 TGACTATTTGGAAATCAGCATTTTGTC 59.186 33.333 0.00 0.00 31.94 3.18
665 4089 7.669427 TGACTATTTGGAAATCAGCATTTTGT 58.331 30.769 0.00 0.00 31.94 2.83
666 4090 8.537049 TTGACTATTTGGAAATCAGCATTTTG 57.463 30.769 0.00 0.00 31.94 2.44
670 4094 9.976511 CATTATTGACTATTTGGAAATCAGCAT 57.023 29.630 0.00 0.00 0.00 3.79
671 4095 7.922278 GCATTATTGACTATTTGGAAATCAGCA 59.078 33.333 0.00 0.00 0.00 4.41
672 4096 7.922278 TGCATTATTGACTATTTGGAAATCAGC 59.078 33.333 0.00 0.00 0.00 4.26
673 4097 9.976511 ATGCATTATTGACTATTTGGAAATCAG 57.023 29.630 0.00 0.00 0.00 2.90
674 4098 9.752961 CATGCATTATTGACTATTTGGAAATCA 57.247 29.630 0.00 0.00 0.00 2.57
675 4099 9.970395 TCATGCATTATTGACTATTTGGAAATC 57.030 29.630 0.00 0.00 0.00 2.17
677 4101 9.585099 GTTCATGCATTATTGACTATTTGGAAA 57.415 29.630 0.00 0.00 0.00 3.13
678 4102 8.970020 AGTTCATGCATTATTGACTATTTGGAA 58.030 29.630 0.00 0.00 0.00 3.53
679 4103 8.523915 AGTTCATGCATTATTGACTATTTGGA 57.476 30.769 0.00 0.00 0.00 3.53
680 4104 9.669353 GTAGTTCATGCATTATTGACTATTTGG 57.331 33.333 0.00 0.00 0.00 3.28
686 4110 9.319143 GTTAGAGTAGTTCATGCATTATTGACT 57.681 33.333 0.00 0.00 0.00 3.41
687 4111 8.552034 GGTTAGAGTAGTTCATGCATTATTGAC 58.448 37.037 0.00 0.00 0.00 3.18
688 4112 7.438160 CGGTTAGAGTAGTTCATGCATTATTGA 59.562 37.037 0.00 0.00 0.00 2.57
689 4113 7.307396 CCGGTTAGAGTAGTTCATGCATTATTG 60.307 40.741 0.00 0.00 0.00 1.90
690 4114 6.706270 CCGGTTAGAGTAGTTCATGCATTATT 59.294 38.462 0.00 0.00 0.00 1.40
691 4115 6.183360 ACCGGTTAGAGTAGTTCATGCATTAT 60.183 38.462 0.00 0.00 0.00 1.28
692 4116 5.128171 ACCGGTTAGAGTAGTTCATGCATTA 59.872 40.000 0.00 0.00 0.00 1.90
693 4117 4.081087 ACCGGTTAGAGTAGTTCATGCATT 60.081 41.667 0.00 0.00 0.00 3.56
694 4118 3.451178 ACCGGTTAGAGTAGTTCATGCAT 59.549 43.478 0.00 0.00 0.00 3.96
695 4119 2.829720 ACCGGTTAGAGTAGTTCATGCA 59.170 45.455 0.00 0.00 0.00 3.96
696 4120 3.119245 TCACCGGTTAGAGTAGTTCATGC 60.119 47.826 2.97 0.00 0.00 4.06
697 4121 4.713824 TCACCGGTTAGAGTAGTTCATG 57.286 45.455 2.97 0.00 0.00 3.07
698 4122 4.954202 TCATCACCGGTTAGAGTAGTTCAT 59.046 41.667 2.97 0.00 0.00 2.57
699 4123 4.338012 TCATCACCGGTTAGAGTAGTTCA 58.662 43.478 2.97 0.00 0.00 3.18
700 4124 4.978083 TCATCACCGGTTAGAGTAGTTC 57.022 45.455 2.97 0.00 0.00 3.01
701 4125 5.202004 AGATCATCACCGGTTAGAGTAGTT 58.798 41.667 2.97 0.00 0.00 2.24
702 4126 4.794334 AGATCATCACCGGTTAGAGTAGT 58.206 43.478 2.97 0.00 0.00 2.73
703 4127 6.148150 GTCTAGATCATCACCGGTTAGAGTAG 59.852 46.154 2.97 8.61 0.00 2.57
704 4128 5.996513 GTCTAGATCATCACCGGTTAGAGTA 59.003 44.000 2.97 0.00 0.00 2.59
705 4129 4.822896 GTCTAGATCATCACCGGTTAGAGT 59.177 45.833 2.97 0.00 0.00 3.24
706 4130 4.822350 TGTCTAGATCATCACCGGTTAGAG 59.178 45.833 2.97 0.00 0.00 2.43
707 4131 4.788679 TGTCTAGATCATCACCGGTTAGA 58.211 43.478 2.97 4.90 0.00 2.10
743 4167 4.697514 TCTTTCAGGACTATACATGCTGC 58.302 43.478 0.00 0.00 35.63 5.25
755 4179 5.711976 TCCAAAAAGGATCATCTTTCAGGAC 59.288 40.000 10.85 0.00 43.07 3.85
772 4196 2.577700 TGCTTAGCTCCGTTCCAAAAA 58.422 42.857 5.60 0.00 0.00 1.94
788 4212 1.558756 ACCTAGCAGAGATGCTTGCTT 59.441 47.619 8.20 0.00 43.52 3.91
807 4232 1.226773 GCGGATGCCATTTGAGCAC 60.227 57.895 0.00 0.00 44.40 4.40
824 4250 3.638592 AATGGTAGGTGGTGCCGGC 62.639 63.158 22.73 22.73 43.70 6.13
825 4251 0.610785 AAAATGGTAGGTGGTGCCGG 60.611 55.000 0.00 0.00 43.70 6.13
826 4252 0.525761 CAAAATGGTAGGTGGTGCCG 59.474 55.000 0.00 0.00 43.70 5.69
827 4253 1.818674 CTCAAAATGGTAGGTGGTGCC 59.181 52.381 0.00 0.00 37.58 5.01
828 4254 2.749621 CTCTCAAAATGGTAGGTGGTGC 59.250 50.000 0.00 0.00 0.00 5.01
862 4289 4.117685 CGTAGTTTATGTAGGAGCAACCC 58.882 47.826 0.00 0.00 40.05 4.11
962 4415 0.454196 GAGCTTGACGAGGAGGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
1182 4644 1.488705 TTCATCACCTCCTTGGCCGT 61.489 55.000 0.00 0.00 40.22 5.68
2084 5573 2.616330 CGCGTTGACCAGCACCATT 61.616 57.895 0.00 0.00 0.00 3.16
2274 5766 0.598680 GCCAACGCGAGCTCTATGAT 60.599 55.000 15.93 0.00 0.00 2.45
2289 5781 2.660064 GGAAGAGGAGGCTCGCCAA 61.660 63.158 11.02 0.00 38.92 4.52
2339 5831 3.002583 TCCGCCATGTCCAGCTCA 61.003 61.111 0.00 0.00 0.00 4.26
2453 5969 0.107848 ACCCGGAGCTTATTTGGACG 60.108 55.000 0.73 0.00 0.00 4.79
2456 5972 1.947456 GCTTACCCGGAGCTTATTTGG 59.053 52.381 0.73 0.00 37.18 3.28
2488 6004 8.438676 TTGACTAGCTTATTATTTGGAGCTTC 57.561 34.615 1.77 0.00 42.46 3.86
2505 6021 4.457257 AGGCACTGAAAAGAATTGACTAGC 59.543 41.667 0.00 0.00 37.18 3.42
2509 6025 8.593492 AAAAATAGGCACTGAAAAGAATTGAC 57.407 30.769 0.00 0.00 41.52 3.18
2524 6040 9.226606 CCACGGATAATAAGATAAAAATAGGCA 57.773 33.333 0.00 0.00 0.00 4.75
2535 6051 9.823647 GATTGATCATACCACGGATAATAAGAT 57.176 33.333 0.00 0.00 0.00 2.40
2536 6052 8.811994 TGATTGATCATACCACGGATAATAAGA 58.188 33.333 0.00 0.00 0.00 2.10
2537 6053 9.435688 TTGATTGATCATACCACGGATAATAAG 57.564 33.333 0.00 0.00 36.56 1.73
2538 6054 9.785982 TTTGATTGATCATACCACGGATAATAA 57.214 29.630 0.00 0.00 36.56 1.40
2539 6055 9.785982 TTTTGATTGATCATACCACGGATAATA 57.214 29.630 0.00 0.00 36.56 0.98
2540 6056 8.690203 TTTTGATTGATCATACCACGGATAAT 57.310 30.769 0.00 0.00 36.56 1.28
2546 6062 6.668541 AGACTTTTGATTGATCATACCACG 57.331 37.500 0.00 0.00 36.56 4.94
2641 6157 8.827177 AAGTCGAATTCATGTTCTTAGTTACA 57.173 30.769 6.22 0.00 0.00 2.41
2646 6162 9.107367 GTTTTGAAGTCGAATTCATGTTCTTAG 57.893 33.333 26.79 0.00 38.90 2.18
2647 6163 8.616942 TGTTTTGAAGTCGAATTCATGTTCTTA 58.383 29.630 26.79 9.25 38.90 2.10
2648 6164 7.432252 GTGTTTTGAAGTCGAATTCATGTTCTT 59.568 33.333 26.79 3.98 38.90 2.52
2649 6165 6.912591 GTGTTTTGAAGTCGAATTCATGTTCT 59.087 34.615 26.79 0.00 38.90 3.01
2656 6172 6.033966 ACTTTGGTGTTTTGAAGTCGAATTC 58.966 36.000 18.22 18.22 0.00 2.17
2716 6232 8.823818 CATGATGCATGTATGATATTCGTATGT 58.176 33.333 2.46 0.00 37.12 2.29
2741 6257 2.462456 AGTACTCGTACGTGAGACCA 57.538 50.000 22.86 0.00 40.80 4.02
2742 6258 2.738846 TCAAGTACTCGTACGTGAGACC 59.261 50.000 22.86 6.87 45.05 3.85
2842 6358 5.071115 TGGCTTGTGTGTATGCTACCATATA 59.929 40.000 0.00 0.00 36.40 0.86
2843 6359 4.141505 TGGCTTGTGTGTATGCTACCATAT 60.142 41.667 0.00 0.00 36.40 1.78
2844 6360 3.198853 TGGCTTGTGTGTATGCTACCATA 59.801 43.478 0.00 0.00 32.85 2.74
2872 6388 9.294030 CTACCATTTCATTTGCATAGAAGAAAC 57.706 33.333 0.00 0.00 0.00 2.78
2889 6405 2.620585 GCCCTCTGATTGCTACCATTTC 59.379 50.000 0.00 0.00 0.00 2.17
2924 6440 1.460504 AGATGTGCTGATTGTGCCTG 58.539 50.000 0.00 0.00 0.00 4.85
2978 6494 6.630443 CGTTTTCATACTGATTTGCTATGAGC 59.370 38.462 0.00 0.00 42.82 4.26
3013 6529 1.450531 ATTTGCTATGAGCGGCTGCC 61.451 55.000 15.55 9.11 46.26 4.85
3055 6572 3.285484 CCATGAGCAGCTCCTATGTTTT 58.715 45.455 20.16 0.00 0.00 2.43
3061 6578 0.826715 GTGACCATGAGCAGCTCCTA 59.173 55.000 20.16 2.02 0.00 2.94
3087 6604 3.849951 CCGTCCCCATCCCAGTCG 61.850 72.222 0.00 0.00 0.00 4.18
3367 6886 3.274288 AGTGCTAAGCTAACAGATTGGC 58.726 45.455 5.68 5.68 46.24 4.52
3370 6889 6.865726 CGATCATAGTGCTAAGCTAACAGATT 59.134 38.462 0.00 0.00 0.00 2.40
3439 6958 8.016301 AGAGTTGCATAATCTCATAGTCAGAA 57.984 34.615 0.00 0.00 0.00 3.02
3588 7107 2.094700 CCTCTCCGACAATCGAAGTGAA 60.095 50.000 6.48 0.00 43.74 3.18
3594 7113 2.617308 GTGATACCTCTCCGACAATCGA 59.383 50.000 0.00 0.00 43.74 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.