Multiple sequence alignment - TraesCS7A01G521500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G521500 chr7A 100.000 2862 0 0 1 2862 705280937 705283798 0.000000e+00 5286
1 TraesCS7A01G521500 chr7A 98.530 2245 32 1 618 2862 556141848 556139605 0.000000e+00 3962
2 TraesCS7A01G521500 chr5B 98.930 2244 24 0 619 2862 448586418 448588661 0.000000e+00 4012
3 TraesCS7A01G521500 chr4A 98.085 2245 24 2 618 2862 3252927 3255152 0.000000e+00 3890
4 TraesCS7A01G521500 chr1A 96.990 2259 34 5 618 2862 485328196 485330434 0.000000e+00 3764
5 TraesCS7A01G521500 chr1A 97.822 1745 18 3 616 2358 507989874 507991600 0.000000e+00 2994
6 TraesCS7A01G521500 chr1B 97.149 2245 26 2 618 2862 30529927 30532133 0.000000e+00 3757
7 TraesCS7A01G521500 chr1B 89.551 890 62 14 1986 2862 663658095 663657224 0.000000e+00 1099
8 TraesCS7A01G521500 chr2B 96.582 2282 41 16 610 2862 629108925 629111198 0.000000e+00 3747
9 TraesCS7A01G521500 chr2B 97.400 1346 15 2 619 1962 90434083 90435410 0.000000e+00 2274
10 TraesCS7A01G521500 chr2B 95.464 485 22 0 2377 2861 571948016 571948500 0.000000e+00 774
11 TraesCS7A01G521500 chr4B 92.882 2276 92 33 612 2861 134586684 134584453 0.000000e+00 3241
12 TraesCS7A01G521500 chr5A 97.667 1629 18 1 613 2241 666315900 666317508 0.000000e+00 2780
13 TraesCS7A01G521500 chr3B 90.277 1553 71 40 619 2116 379678261 379676734 0.000000e+00 1958
14 TraesCS7A01G521500 chr3B 95.924 368 14 1 618 985 457636053 457636419 1.900000e-166 595
15 TraesCS7A01G521500 chr7D 93.959 629 21 4 6 618 613619920 613620547 0.000000e+00 935
16 TraesCS7A01G521500 chr3A 95.885 486 20 0 2377 2862 11578954 11579439 0.000000e+00 787
17 TraesCS7A01G521500 chr7B 88.527 645 25 13 1 618 704282122 704282744 0.000000e+00 736


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G521500 chr7A 705280937 705283798 2861 False 5286 5286 100.000 1 2862 1 chr7A.!!$F1 2861
1 TraesCS7A01G521500 chr7A 556139605 556141848 2243 True 3962 3962 98.530 618 2862 1 chr7A.!!$R1 2244
2 TraesCS7A01G521500 chr5B 448586418 448588661 2243 False 4012 4012 98.930 619 2862 1 chr5B.!!$F1 2243
3 TraesCS7A01G521500 chr4A 3252927 3255152 2225 False 3890 3890 98.085 618 2862 1 chr4A.!!$F1 2244
4 TraesCS7A01G521500 chr1A 485328196 485330434 2238 False 3764 3764 96.990 618 2862 1 chr1A.!!$F1 2244
5 TraesCS7A01G521500 chr1A 507989874 507991600 1726 False 2994 2994 97.822 616 2358 1 chr1A.!!$F2 1742
6 TraesCS7A01G521500 chr1B 30529927 30532133 2206 False 3757 3757 97.149 618 2862 1 chr1B.!!$F1 2244
7 TraesCS7A01G521500 chr1B 663657224 663658095 871 True 1099 1099 89.551 1986 2862 1 chr1B.!!$R1 876
8 TraesCS7A01G521500 chr2B 629108925 629111198 2273 False 3747 3747 96.582 610 2862 1 chr2B.!!$F3 2252
9 TraesCS7A01G521500 chr2B 90434083 90435410 1327 False 2274 2274 97.400 619 1962 1 chr2B.!!$F1 1343
10 TraesCS7A01G521500 chr4B 134584453 134586684 2231 True 3241 3241 92.882 612 2861 1 chr4B.!!$R1 2249
11 TraesCS7A01G521500 chr5A 666315900 666317508 1608 False 2780 2780 97.667 613 2241 1 chr5A.!!$F1 1628
12 TraesCS7A01G521500 chr3B 379676734 379678261 1527 True 1958 1958 90.277 619 2116 1 chr3B.!!$R1 1497
13 TraesCS7A01G521500 chr7D 613619920 613620547 627 False 935 935 93.959 6 618 1 chr7D.!!$F1 612
14 TraesCS7A01G521500 chr7B 704282122 704282744 622 False 736 736 88.527 1 618 1 chr7B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.023732 CGCAGATCAACAACTACGCG 59.976 55.0 3.53 3.53 35.14 6.01 F
585 586 0.030638 ATGTGCTGGTTCAAACGTGC 59.969 50.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 2069 1.601903 ACAACACCATACAACAGTGCG 59.398 47.619 0.00 0.0 34.83 5.34 R
2220 2596 4.465660 TGTGCCAAATATGCCAAGTTGTAT 59.534 37.500 1.45 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.817709 TTCCCTTTCTTGGCAAAACAG 57.182 42.857 0.00 0.00 0.00 3.16
22 23 2.038659 TCCCTTTCTTGGCAAAACAGG 58.961 47.619 0.00 0.00 0.00 4.00
23 24 2.038659 CCCTTTCTTGGCAAAACAGGA 58.961 47.619 7.32 0.00 0.00 3.86
24 25 2.433970 CCCTTTCTTGGCAAAACAGGAA 59.566 45.455 7.32 1.23 35.08 3.36
25 26 3.118445 CCCTTTCTTGGCAAAACAGGAAA 60.118 43.478 7.32 8.94 42.00 3.13
26 27 4.512484 CCTTTCTTGGCAAAACAGGAAAA 58.488 39.130 0.00 0.00 43.07 2.29
27 28 4.332543 CCTTTCTTGGCAAAACAGGAAAAC 59.667 41.667 0.00 0.00 43.07 2.43
28 29 4.543590 TTCTTGGCAAAACAGGAAAACA 57.456 36.364 0.00 0.00 34.13 2.83
29 30 4.751767 TCTTGGCAAAACAGGAAAACAT 57.248 36.364 0.00 0.00 0.00 2.71
30 31 4.440880 TCTTGGCAAAACAGGAAAACATG 58.559 39.130 0.00 0.00 0.00 3.21
31 32 4.161189 TCTTGGCAAAACAGGAAAACATGA 59.839 37.500 0.00 0.00 0.00 3.07
32 33 4.686191 TGGCAAAACAGGAAAACATGAT 57.314 36.364 0.00 0.00 0.00 2.45
33 34 4.378774 TGGCAAAACAGGAAAACATGATG 58.621 39.130 0.00 0.00 0.00 3.07
34 35 3.187022 GGCAAAACAGGAAAACATGATGC 59.813 43.478 0.00 0.00 0.00 3.91
35 36 4.060205 GCAAAACAGGAAAACATGATGCT 58.940 39.130 0.00 0.00 0.00 3.79
36 37 4.151157 GCAAAACAGGAAAACATGATGCTC 59.849 41.667 0.00 0.00 0.00 4.26
37 38 5.291178 CAAAACAGGAAAACATGATGCTCA 58.709 37.500 0.00 0.00 0.00 4.26
38 39 5.534207 AAACAGGAAAACATGATGCTCAA 57.466 34.783 0.00 0.00 0.00 3.02
39 40 4.778534 ACAGGAAAACATGATGCTCAAG 57.221 40.909 0.00 0.00 0.00 3.02
40 41 3.508793 ACAGGAAAACATGATGCTCAAGG 59.491 43.478 0.00 0.00 0.00 3.61
41 42 3.760151 CAGGAAAACATGATGCTCAAGGA 59.240 43.478 0.00 0.00 0.00 3.36
42 43 4.015084 AGGAAAACATGATGCTCAAGGAG 58.985 43.478 0.00 0.00 0.00 3.69
53 54 1.654317 CTCAAGGAGCAGATGACAGC 58.346 55.000 0.00 0.00 0.00 4.40
54 55 0.251354 TCAAGGAGCAGATGACAGCC 59.749 55.000 0.00 0.00 0.00 4.85
55 56 1.088340 CAAGGAGCAGATGACAGCCG 61.088 60.000 0.00 0.00 0.00 5.52
56 57 1.548357 AAGGAGCAGATGACAGCCGT 61.548 55.000 0.00 0.00 0.00 5.68
57 58 1.520342 GGAGCAGATGACAGCCGTC 60.520 63.158 0.00 0.00 42.93 4.79
58 59 1.520342 GAGCAGATGACAGCCGTCC 60.520 63.158 0.00 0.00 41.85 4.79
59 60 1.954362 GAGCAGATGACAGCCGTCCT 61.954 60.000 0.00 0.00 41.85 3.85
67 68 4.056125 CAGCCGTCCTGTCGCAGA 62.056 66.667 8.20 0.00 36.79 4.26
68 69 3.303135 AGCCGTCCTGTCGCAGAA 61.303 61.111 8.20 0.00 39.69 3.02
69 70 3.112709 GCCGTCCTGTCGCAGAAC 61.113 66.667 8.20 0.00 39.69 3.01
70 71 2.805353 CCGTCCTGTCGCAGAACG 60.805 66.667 10.63 10.63 39.69 3.95
71 72 3.470567 CGTCCTGTCGCAGAACGC 61.471 66.667 5.80 0.00 43.23 4.84
80 81 2.357034 GCAGAACGCGGTCCTGAA 60.357 61.111 22.82 0.00 0.00 3.02
81 82 2.383527 GCAGAACGCGGTCCTGAAG 61.384 63.158 22.82 7.16 0.00 3.02
82 83 2.048127 AGAACGCGGTCCTGAAGC 60.048 61.111 22.82 0.00 0.00 3.86
105 106 2.887568 GTGGCGATCCAGCACGAG 60.888 66.667 0.00 0.00 44.48 4.18
106 107 4.819761 TGGCGATCCAGCACGAGC 62.820 66.667 0.00 0.00 37.47 5.03
116 117 4.742201 GCACGAGCGGCAGAAGGA 62.742 66.667 1.45 0.00 0.00 3.36
117 118 2.507992 CACGAGCGGCAGAAGGAG 60.508 66.667 1.45 0.00 0.00 3.69
118 119 2.992114 ACGAGCGGCAGAAGGAGT 60.992 61.111 1.45 0.00 0.00 3.85
119 120 2.262915 CGAGCGGCAGAAGGAGTT 59.737 61.111 1.45 0.00 0.00 3.01
120 121 1.374758 CGAGCGGCAGAAGGAGTTT 60.375 57.895 1.45 0.00 0.00 2.66
121 122 1.630244 CGAGCGGCAGAAGGAGTTTG 61.630 60.000 1.45 0.00 0.00 2.93
122 123 0.320771 GAGCGGCAGAAGGAGTTTGA 60.321 55.000 1.45 0.00 0.00 2.69
123 124 0.603975 AGCGGCAGAAGGAGTTTGAC 60.604 55.000 1.45 0.00 0.00 3.18
124 125 1.901650 GCGGCAGAAGGAGTTTGACG 61.902 60.000 0.00 0.00 45.76 4.35
125 126 0.319555 CGGCAGAAGGAGTTTGACGA 60.320 55.000 0.00 0.00 45.87 4.20
126 127 1.433534 GGCAGAAGGAGTTTGACGAG 58.566 55.000 0.00 0.00 0.00 4.18
127 128 0.793250 GCAGAAGGAGTTTGACGAGC 59.207 55.000 0.00 0.00 0.00 5.03
128 129 1.063806 CAGAAGGAGTTTGACGAGCG 58.936 55.000 0.00 0.00 0.00 5.03
129 130 0.038159 AGAAGGAGTTTGACGAGCGG 60.038 55.000 0.00 0.00 0.00 5.52
130 131 0.038526 GAAGGAGTTTGACGAGCGGA 60.039 55.000 0.00 0.00 0.00 5.54
131 132 0.038159 AAGGAGTTTGACGAGCGGAG 60.038 55.000 0.00 0.00 0.00 4.63
149 150 4.335647 CAACGAGGTGCAGGGCCT 62.336 66.667 0.00 0.00 39.42 5.19
150 151 4.335647 AACGAGGTGCAGGGCCTG 62.336 66.667 29.44 29.44 36.29 4.85
152 153 4.020617 CGAGGTGCAGGGCCTGAA 62.021 66.667 37.07 26.01 36.29 3.02
153 154 2.045536 GAGGTGCAGGGCCTGAAG 60.046 66.667 37.07 11.76 36.29 3.02
154 155 4.357279 AGGTGCAGGGCCTGAAGC 62.357 66.667 37.07 34.60 37.76 3.86
155 156 4.666253 GGTGCAGGGCCTGAAGCA 62.666 66.667 37.07 24.64 46.50 3.91
156 157 3.060615 GTGCAGGGCCTGAAGCAG 61.061 66.667 37.07 10.08 46.50 4.24
158 159 4.737177 GCAGGGCCTGAAGCAGCT 62.737 66.667 37.07 0.00 46.50 4.24
159 160 2.438075 CAGGGCCTGAAGCAGCTC 60.438 66.667 29.96 0.00 46.50 4.09
160 161 4.093291 AGGGCCTGAAGCAGCTCG 62.093 66.667 4.50 0.00 46.50 5.03
161 162 4.400961 GGGCCTGAAGCAGCTCGT 62.401 66.667 0.84 0.00 46.50 4.18
162 163 2.817396 GGCCTGAAGCAGCTCGTC 60.817 66.667 0.00 0.00 46.50 4.20
163 164 2.817396 GCCTGAAGCAGCTCGTCC 60.817 66.667 0.00 0.00 42.97 4.79
164 165 2.977178 CCTGAAGCAGCTCGTCCT 59.023 61.111 0.00 0.00 0.00 3.85
165 166 1.447489 CCTGAAGCAGCTCGTCCTG 60.447 63.158 0.00 1.57 35.93 3.86
171 172 4.485554 CAGCTCGTCCTGCAGTAC 57.514 61.111 13.81 6.10 0.00 2.73
172 173 1.153745 CAGCTCGTCCTGCAGTACC 60.154 63.158 13.81 0.00 0.00 3.34
173 174 1.606601 AGCTCGTCCTGCAGTACCA 60.607 57.895 13.81 0.00 0.00 3.25
174 175 1.153745 GCTCGTCCTGCAGTACCAG 60.154 63.158 13.81 6.31 0.00 4.00
180 181 4.928398 CTGCAGTACCAGGAGCAG 57.072 61.111 5.25 11.56 46.98 4.24
181 182 1.449246 CTGCAGTACCAGGAGCAGC 60.449 63.158 5.25 5.57 46.51 5.25
182 183 1.897225 CTGCAGTACCAGGAGCAGCT 61.897 60.000 5.25 0.00 46.51 4.24
183 184 1.449246 GCAGTACCAGGAGCAGCTG 60.449 63.158 10.11 10.11 0.00 4.24
184 185 1.892819 GCAGTACCAGGAGCAGCTGA 61.893 60.000 20.43 0.00 0.00 4.26
185 186 0.175302 CAGTACCAGGAGCAGCTGAG 59.825 60.000 20.43 0.53 0.00 3.35
186 187 0.975040 AGTACCAGGAGCAGCTGAGG 60.975 60.000 20.43 12.54 0.00 3.86
187 188 0.972983 GTACCAGGAGCAGCTGAGGA 60.973 60.000 20.43 0.00 0.00 3.71
188 189 0.972983 TACCAGGAGCAGCTGAGGAC 60.973 60.000 20.43 3.82 0.00 3.85
189 190 1.988956 CCAGGAGCAGCTGAGGACT 60.989 63.158 20.43 4.25 0.00 3.85
190 191 1.516892 CAGGAGCAGCTGAGGACTC 59.483 63.158 20.43 14.05 0.00 3.36
191 192 0.971959 CAGGAGCAGCTGAGGACTCT 60.972 60.000 20.43 2.93 0.00 3.24
192 193 0.684153 AGGAGCAGCTGAGGACTCTC 60.684 60.000 20.43 12.90 40.36 3.20
193 194 1.433064 GAGCAGCTGAGGACTCTCG 59.567 63.158 20.43 0.00 42.79 4.04
194 195 1.001517 AGCAGCTGAGGACTCTCGA 60.002 57.895 20.43 0.00 42.79 4.04
195 196 1.031571 AGCAGCTGAGGACTCTCGAG 61.032 60.000 20.43 5.93 42.79 4.04
196 197 2.003658 GCAGCTGAGGACTCTCGAGG 62.004 65.000 20.43 5.96 42.79 4.63
197 198 0.679640 CAGCTGAGGACTCTCGAGGT 60.680 60.000 8.42 9.47 42.79 3.85
198 199 0.679640 AGCTGAGGACTCTCGAGGTG 60.680 60.000 13.56 8.64 42.79 4.00
199 200 0.678366 GCTGAGGACTCTCGAGGTGA 60.678 60.000 13.56 0.00 42.79 4.02
200 201 1.091537 CTGAGGACTCTCGAGGTGAC 58.908 60.000 13.56 6.45 42.79 3.67
201 202 0.673956 TGAGGACTCTCGAGGTGACG 60.674 60.000 13.56 0.00 42.79 4.35
202 203 0.391395 GAGGACTCTCGAGGTGACGA 60.391 60.000 13.56 0.00 40.00 4.20
203 204 0.253610 AGGACTCTCGAGGTGACGAT 59.746 55.000 13.56 0.00 41.39 3.73
204 205 0.658897 GGACTCTCGAGGTGACGATC 59.341 60.000 13.56 0.27 41.39 3.69
205 206 0.302288 GACTCTCGAGGTGACGATCG 59.698 60.000 14.88 14.88 41.39 3.69
206 207 0.108281 ACTCTCGAGGTGACGATCGA 60.108 55.000 24.34 10.40 45.06 3.59
207 208 0.302288 CTCTCGAGGTGACGATCGAC 59.698 60.000 24.34 17.11 42.61 4.20
208 209 1.088340 TCTCGAGGTGACGATCGACC 61.088 60.000 24.34 19.66 42.61 4.79
209 210 2.049475 CTCGAGGTGACGATCGACCC 62.049 65.000 24.34 17.94 42.61 4.46
210 211 2.113433 CGAGGTGACGATCGACCCT 61.113 63.158 24.34 22.09 41.40 4.34
211 212 0.812811 CGAGGTGACGATCGACCCTA 60.813 60.000 24.34 0.00 41.40 3.53
212 213 0.945813 GAGGTGACGATCGACCCTAG 59.054 60.000 24.34 0.00 32.03 3.02
213 214 0.465824 AGGTGACGATCGACCCTAGG 60.466 60.000 24.34 0.06 32.03 3.02
214 215 1.359475 GTGACGATCGACCCTAGGC 59.641 63.158 24.34 0.00 0.00 3.93
215 216 1.826921 TGACGATCGACCCTAGGCC 60.827 63.158 24.34 0.00 0.00 5.19
216 217 2.521224 ACGATCGACCCTAGGCCC 60.521 66.667 24.34 0.00 0.00 5.80
217 218 3.303928 CGATCGACCCTAGGCCCC 61.304 72.222 10.26 0.00 0.00 5.80
218 219 2.201771 GATCGACCCTAGGCCCCT 59.798 66.667 2.05 0.00 0.00 4.79
219 220 1.909287 GATCGACCCTAGGCCCCTC 60.909 68.421 2.05 0.00 0.00 4.30
220 221 3.469978 ATCGACCCTAGGCCCCTCC 62.470 68.421 2.05 0.00 0.00 4.30
222 223 2.373100 GACCCTAGGCCCCTCCTT 59.627 66.667 2.05 0.00 44.75 3.36
223 224 1.307953 GACCCTAGGCCCCTCCTTT 60.308 63.158 2.05 0.00 44.75 3.11
224 225 1.307953 ACCCTAGGCCCCTCCTTTC 60.308 63.158 2.05 0.00 44.75 2.62
225 226 2.444256 CCCTAGGCCCCTCCTTTCG 61.444 68.421 2.05 0.00 44.75 3.46
226 227 2.444256 CCTAGGCCCCTCCTTTCGG 61.444 68.421 0.00 0.00 44.75 4.30
227 228 3.087906 TAGGCCCCTCCTTTCGGC 61.088 66.667 0.00 0.00 44.75 5.54
228 229 3.935456 TAGGCCCCTCCTTTCGGCA 62.935 63.158 0.00 0.00 44.75 5.69
229 230 4.360405 GGCCCCTCCTTTCGGCAA 62.360 66.667 0.00 0.00 44.90 4.52
230 231 2.282887 GCCCCTCCTTTCGGCAAA 60.283 61.111 0.00 0.00 42.52 3.68
231 232 1.682344 GCCCCTCCTTTCGGCAAAT 60.682 57.895 0.00 0.00 42.52 2.32
232 233 1.257750 GCCCCTCCTTTCGGCAAATT 61.258 55.000 0.00 0.00 42.52 1.82
233 234 0.817654 CCCCTCCTTTCGGCAAATTC 59.182 55.000 0.00 0.00 0.00 2.17
234 235 1.544724 CCCTCCTTTCGGCAAATTCA 58.455 50.000 0.00 0.00 0.00 2.57
235 236 1.202348 CCCTCCTTTCGGCAAATTCAC 59.798 52.381 0.00 0.00 0.00 3.18
236 237 1.885887 CCTCCTTTCGGCAAATTCACA 59.114 47.619 0.00 0.00 0.00 3.58
237 238 2.351738 CCTCCTTTCGGCAAATTCACAC 60.352 50.000 0.00 0.00 0.00 3.82
238 239 2.293122 CTCCTTTCGGCAAATTCACACA 59.707 45.455 0.00 0.00 0.00 3.72
239 240 2.890311 TCCTTTCGGCAAATTCACACAT 59.110 40.909 0.00 0.00 0.00 3.21
240 241 3.057596 TCCTTTCGGCAAATTCACACATC 60.058 43.478 0.00 0.00 0.00 3.06
241 242 3.244976 CTTTCGGCAAATTCACACATCC 58.755 45.455 0.00 0.00 0.00 3.51
242 243 2.198827 TCGGCAAATTCACACATCCT 57.801 45.000 0.00 0.00 0.00 3.24
243 244 2.513753 TCGGCAAATTCACACATCCTT 58.486 42.857 0.00 0.00 0.00 3.36
244 245 2.890311 TCGGCAAATTCACACATCCTTT 59.110 40.909 0.00 0.00 0.00 3.11
245 246 3.320541 TCGGCAAATTCACACATCCTTTT 59.679 39.130 0.00 0.00 0.00 2.27
246 247 3.674753 CGGCAAATTCACACATCCTTTTC 59.325 43.478 0.00 0.00 0.00 2.29
247 248 4.559300 CGGCAAATTCACACATCCTTTTCT 60.559 41.667 0.00 0.00 0.00 2.52
248 249 4.687483 GGCAAATTCACACATCCTTTTCTG 59.313 41.667 0.00 0.00 0.00 3.02
249 250 5.291971 GCAAATTCACACATCCTTTTCTGT 58.708 37.500 0.00 0.00 0.00 3.41
250 251 5.754890 GCAAATTCACACATCCTTTTCTGTT 59.245 36.000 0.00 0.00 0.00 3.16
251 252 6.258507 GCAAATTCACACATCCTTTTCTGTTT 59.741 34.615 0.00 0.00 0.00 2.83
252 253 7.623770 CAAATTCACACATCCTTTTCTGTTTG 58.376 34.615 0.00 0.00 0.00 2.93
253 254 6.713762 ATTCACACATCCTTTTCTGTTTGA 57.286 33.333 0.00 0.00 32.00 2.69
254 255 6.713762 TTCACACATCCTTTTCTGTTTGAT 57.286 33.333 0.00 0.00 33.48 2.57
255 256 6.075762 TCACACATCCTTTTCTGTTTGATG 57.924 37.500 0.00 0.00 38.94 3.07
256 257 5.827267 TCACACATCCTTTTCTGTTTGATGA 59.173 36.000 4.93 0.00 37.01 2.92
257 258 5.916883 CACACATCCTTTTCTGTTTGATGAC 59.083 40.000 4.93 0.00 37.01 3.06
258 259 5.593909 ACACATCCTTTTCTGTTTGATGACA 59.406 36.000 4.93 0.00 37.01 3.58
259 260 6.266103 ACACATCCTTTTCTGTTTGATGACAT 59.734 34.615 4.93 0.00 37.01 3.06
260 261 7.448161 ACACATCCTTTTCTGTTTGATGACATA 59.552 33.333 4.93 0.00 37.01 2.29
261 262 8.464404 CACATCCTTTTCTGTTTGATGACATAT 58.536 33.333 4.93 0.00 37.01 1.78
262 263 8.464404 ACATCCTTTTCTGTTTGATGACATATG 58.536 33.333 0.00 0.00 37.01 1.78
263 264 8.680001 CATCCTTTTCTGTTTGATGACATATGA 58.320 33.333 10.38 0.00 35.89 2.15
264 265 8.634335 TCCTTTTCTGTTTGATGACATATGAA 57.366 30.769 10.38 0.00 0.00 2.57
265 266 8.514594 TCCTTTTCTGTTTGATGACATATGAAC 58.485 33.333 10.38 2.78 0.00 3.18
266 267 8.517878 CCTTTTCTGTTTGATGACATATGAACT 58.482 33.333 10.38 0.00 0.00 3.01
267 268 9.338291 CTTTTCTGTTTGATGACATATGAACTG 57.662 33.333 10.38 6.50 0.00 3.16
268 269 8.620116 TTTCTGTTTGATGACATATGAACTGA 57.380 30.769 10.38 8.64 0.00 3.41
269 270 8.620116 TTCTGTTTGATGACATATGAACTGAA 57.380 30.769 10.38 13.56 33.26 3.02
270 271 8.260270 TCTGTTTGATGACATATGAACTGAAG 57.740 34.615 10.38 0.00 0.00 3.02
271 272 8.096414 TCTGTTTGATGACATATGAACTGAAGA 58.904 33.333 10.38 0.00 0.00 2.87
272 273 8.620116 TGTTTGATGACATATGAACTGAAGAA 57.380 30.769 10.38 0.00 0.00 2.52
273 274 9.234827 TGTTTGATGACATATGAACTGAAGAAT 57.765 29.630 10.38 0.00 0.00 2.40
274 275 9.713740 GTTTGATGACATATGAACTGAAGAATC 57.286 33.333 10.38 2.57 0.00 2.52
275 276 9.676861 TTTGATGACATATGAACTGAAGAATCT 57.323 29.630 10.38 0.00 0.00 2.40
277 278 9.755804 TGATGACATATGAACTGAAGAATCTAC 57.244 33.333 10.38 0.00 0.00 2.59
278 279 9.979578 GATGACATATGAACTGAAGAATCTACT 57.020 33.333 10.38 0.00 0.00 2.57
282 283 9.950496 ACATATGAACTGAAGAATCTACTTTGT 57.050 29.630 10.38 0.00 0.00 2.83
284 285 9.950496 ATATGAACTGAAGAATCTACTTTGTGT 57.050 29.630 0.00 0.00 0.00 3.72
285 286 7.715265 TGAACTGAAGAATCTACTTTGTGTC 57.285 36.000 0.00 0.00 0.00 3.67
286 287 6.420903 TGAACTGAAGAATCTACTTTGTGTCG 59.579 38.462 0.00 0.00 0.00 4.35
287 288 4.686554 ACTGAAGAATCTACTTTGTGTCGC 59.313 41.667 0.00 0.00 0.00 5.19
288 289 4.627058 TGAAGAATCTACTTTGTGTCGCA 58.373 39.130 0.00 0.00 0.00 5.10
289 290 4.686091 TGAAGAATCTACTTTGTGTCGCAG 59.314 41.667 0.00 0.00 0.00 5.18
290 291 4.521130 AGAATCTACTTTGTGTCGCAGA 57.479 40.909 0.00 0.00 0.00 4.26
291 292 5.078411 AGAATCTACTTTGTGTCGCAGAT 57.922 39.130 0.00 0.00 40.67 2.90
292 293 5.105752 AGAATCTACTTTGTGTCGCAGATC 58.894 41.667 0.00 0.00 40.67 2.75
293 294 3.934457 TCTACTTTGTGTCGCAGATCA 57.066 42.857 0.00 0.00 40.67 2.92
294 295 4.251543 TCTACTTTGTGTCGCAGATCAA 57.748 40.909 0.00 0.00 40.67 2.57
295 296 3.987868 TCTACTTTGTGTCGCAGATCAAC 59.012 43.478 0.00 0.00 40.67 3.18
296 297 2.560504 ACTTTGTGTCGCAGATCAACA 58.439 42.857 0.00 0.00 40.67 3.33
297 298 2.942376 ACTTTGTGTCGCAGATCAACAA 59.058 40.909 0.00 0.00 40.67 2.83
298 299 3.242739 ACTTTGTGTCGCAGATCAACAAC 60.243 43.478 0.00 0.00 40.67 3.32
299 300 2.238942 TGTGTCGCAGATCAACAACT 57.761 45.000 0.00 0.00 40.67 3.16
300 301 3.378911 TGTGTCGCAGATCAACAACTA 57.621 42.857 0.00 0.00 40.67 2.24
301 302 3.057019 TGTGTCGCAGATCAACAACTAC 58.943 45.455 0.00 0.00 40.67 2.73
302 303 2.090658 GTGTCGCAGATCAACAACTACG 59.909 50.000 0.00 0.00 40.67 3.51
303 304 1.059264 GTCGCAGATCAACAACTACGC 59.941 52.381 0.00 0.00 40.67 4.42
304 305 0.023732 CGCAGATCAACAACTACGCG 59.976 55.000 3.53 3.53 35.14 6.01
305 306 0.247301 GCAGATCAACAACTACGCGC 60.247 55.000 5.73 0.00 0.00 6.86
306 307 1.350193 CAGATCAACAACTACGCGCT 58.650 50.000 5.73 0.00 0.00 5.92
307 308 1.059692 CAGATCAACAACTACGCGCTG 59.940 52.381 5.73 0.62 0.00 5.18
308 309 0.247301 GATCAACAACTACGCGCTGC 60.247 55.000 5.73 0.00 0.00 5.25
309 310 0.948623 ATCAACAACTACGCGCTGCA 60.949 50.000 5.73 0.00 0.00 4.41
310 311 1.154599 CAACAACTACGCGCTGCAG 60.155 57.895 10.11 10.11 0.00 4.41
311 312 1.300620 AACAACTACGCGCTGCAGA 60.301 52.632 20.43 0.00 0.00 4.26
312 313 0.670546 AACAACTACGCGCTGCAGAT 60.671 50.000 20.43 1.30 0.00 2.90
313 314 1.346197 CAACTACGCGCTGCAGATG 59.654 57.895 20.43 10.19 0.00 2.90
314 315 2.456119 AACTACGCGCTGCAGATGC 61.456 57.895 20.43 19.18 42.50 3.91
327 328 3.097461 AGATGCATCTGAAGCAGGC 57.903 52.632 28.21 7.85 46.36 4.85
328 329 0.465824 AGATGCATCTGAAGCAGGCC 60.466 55.000 28.21 0.00 46.36 5.19
329 330 1.453762 GATGCATCTGAAGCAGGCCC 61.454 60.000 19.70 0.00 46.36 5.80
330 331 2.044650 GCATCTGAAGCAGGCCCA 60.045 61.111 0.00 0.00 31.51 5.36
331 332 2.119655 GCATCTGAAGCAGGCCCAG 61.120 63.158 0.00 0.00 31.51 4.45
332 333 2.119655 CATCTGAAGCAGGCCCAGC 61.120 63.158 9.68 9.68 31.51 4.85
333 334 2.609534 ATCTGAAGCAGGCCCAGCA 61.610 57.895 18.87 1.26 31.51 4.41
334 335 2.553765 ATCTGAAGCAGGCCCAGCAG 62.554 60.000 18.87 10.70 31.51 4.24
335 336 3.251509 TGAAGCAGGCCCAGCAGA 61.252 61.111 18.87 0.62 0.00 4.26
336 337 2.438075 GAAGCAGGCCCAGCAGAG 60.438 66.667 18.87 0.00 0.00 3.35
337 338 4.737177 AAGCAGGCCCAGCAGAGC 62.737 66.667 18.87 3.60 0.00 4.09
344 345 3.714001 CCCAGCAGAGCAGCTCCA 61.714 66.667 19.40 0.00 44.54 3.86
345 346 2.590645 CCAGCAGAGCAGCTCCAT 59.409 61.111 19.40 2.13 44.54 3.41
346 347 1.820056 CCAGCAGAGCAGCTCCATG 60.820 63.158 19.40 12.73 44.54 3.66
347 348 2.124653 AGCAGAGCAGCTCCATGC 60.125 61.111 23.13 23.13 42.18 4.06
369 370 4.729856 GCGCTACAACCCGGACGT 62.730 66.667 0.73 0.00 0.00 4.34
370 371 2.505557 CGCTACAACCCGGACGTC 60.506 66.667 7.13 7.13 0.00 4.34
371 372 2.968206 GCTACAACCCGGACGTCT 59.032 61.111 16.46 0.00 0.00 4.18
372 373 1.291272 GCTACAACCCGGACGTCTT 59.709 57.895 16.46 0.00 0.00 3.01
373 374 0.735287 GCTACAACCCGGACGTCTTC 60.735 60.000 16.46 0.00 0.00 2.87
374 375 0.886563 CTACAACCCGGACGTCTTCT 59.113 55.000 16.46 0.00 0.00 2.85
375 376 2.086869 CTACAACCCGGACGTCTTCTA 58.913 52.381 16.46 0.00 0.00 2.10
376 377 1.331214 ACAACCCGGACGTCTTCTAA 58.669 50.000 16.46 0.00 0.00 2.10
377 378 1.897802 ACAACCCGGACGTCTTCTAAT 59.102 47.619 16.46 0.00 0.00 1.73
378 379 2.301009 ACAACCCGGACGTCTTCTAATT 59.699 45.455 16.46 0.23 0.00 1.40
379 380 3.244318 ACAACCCGGACGTCTTCTAATTT 60.244 43.478 16.46 0.00 0.00 1.82
380 381 2.968675 ACCCGGACGTCTTCTAATTTG 58.031 47.619 16.46 0.00 0.00 2.32
381 382 2.277084 CCCGGACGTCTTCTAATTTGG 58.723 52.381 16.46 3.86 0.00 3.28
382 383 1.664151 CCGGACGTCTTCTAATTTGGC 59.336 52.381 16.46 0.00 0.00 4.52
383 384 2.618053 CGGACGTCTTCTAATTTGGCT 58.382 47.619 16.46 0.00 0.00 4.75
384 385 3.000727 CGGACGTCTTCTAATTTGGCTT 58.999 45.455 16.46 0.00 0.00 4.35
385 386 3.181520 CGGACGTCTTCTAATTTGGCTTG 60.182 47.826 16.46 0.00 0.00 4.01
386 387 4.000988 GGACGTCTTCTAATTTGGCTTGA 58.999 43.478 16.46 0.00 0.00 3.02
387 388 4.093556 GGACGTCTTCTAATTTGGCTTGAG 59.906 45.833 16.46 0.00 0.00 3.02
388 389 4.003648 ACGTCTTCTAATTTGGCTTGAGG 58.996 43.478 0.00 0.00 0.00 3.86
389 390 3.375299 CGTCTTCTAATTTGGCTTGAGGG 59.625 47.826 0.00 0.00 0.00 4.30
390 391 4.336280 GTCTTCTAATTTGGCTTGAGGGT 58.664 43.478 0.00 0.00 0.00 4.34
391 392 4.156739 GTCTTCTAATTTGGCTTGAGGGTG 59.843 45.833 0.00 0.00 0.00 4.61
392 393 4.042809 TCTTCTAATTTGGCTTGAGGGTGA 59.957 41.667 0.00 0.00 0.00 4.02
393 394 4.591321 TCTAATTTGGCTTGAGGGTGAT 57.409 40.909 0.00 0.00 0.00 3.06
394 395 4.272489 TCTAATTTGGCTTGAGGGTGATG 58.728 43.478 0.00 0.00 0.00 3.07
395 396 2.905415 ATTTGGCTTGAGGGTGATGA 57.095 45.000 0.00 0.00 0.00 2.92
396 397 2.905415 TTTGGCTTGAGGGTGATGAT 57.095 45.000 0.00 0.00 0.00 2.45
397 398 2.133281 TTGGCTTGAGGGTGATGATG 57.867 50.000 0.00 0.00 0.00 3.07
398 399 0.256752 TGGCTTGAGGGTGATGATGG 59.743 55.000 0.00 0.00 0.00 3.51
399 400 0.257039 GGCTTGAGGGTGATGATGGT 59.743 55.000 0.00 0.00 0.00 3.55
400 401 1.386533 GCTTGAGGGTGATGATGGTG 58.613 55.000 0.00 0.00 0.00 4.17
401 402 1.065199 GCTTGAGGGTGATGATGGTGA 60.065 52.381 0.00 0.00 0.00 4.02
402 403 2.915349 CTTGAGGGTGATGATGGTGAG 58.085 52.381 0.00 0.00 0.00 3.51
403 404 0.543277 TGAGGGTGATGATGGTGAGC 59.457 55.000 0.00 0.00 0.00 4.26
404 405 0.179034 GAGGGTGATGATGGTGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
405 406 1.152881 GGGTGATGATGGTGAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
406 407 1.639635 GGGTGATGATGGTGAGCCCT 61.640 60.000 0.00 0.00 0.00 5.19
407 408 0.465097 GGTGATGATGGTGAGCCCTG 60.465 60.000 0.00 0.00 0.00 4.45
408 409 0.465097 GTGATGATGGTGAGCCCTGG 60.465 60.000 0.00 0.00 0.00 4.45
409 410 1.527844 GATGATGGTGAGCCCTGGC 60.528 63.158 0.00 0.00 42.33 4.85
410 411 2.972892 GATGATGGTGAGCCCTGGCC 62.973 65.000 4.13 0.00 43.17 5.36
411 412 4.512914 GATGGTGAGCCCTGGCCC 62.513 72.222 4.13 0.00 43.17 5.80
414 415 4.748144 GGTGAGCCCTGGCCCTTG 62.748 72.222 4.13 0.00 43.17 3.61
415 416 4.748144 GTGAGCCCTGGCCCTTGG 62.748 72.222 4.13 0.00 43.17 3.61
430 431 2.996631 CCTTGGGGATTGAGAGTTGAG 58.003 52.381 0.00 0.00 33.58 3.02
431 432 2.573462 CCTTGGGGATTGAGAGTTGAGA 59.427 50.000 0.00 0.00 33.58 3.27
432 433 3.009473 CCTTGGGGATTGAGAGTTGAGAA 59.991 47.826 0.00 0.00 33.58 2.87
433 434 4.324874 CCTTGGGGATTGAGAGTTGAGAAT 60.325 45.833 0.00 0.00 33.58 2.40
434 435 5.104360 CCTTGGGGATTGAGAGTTGAGAATA 60.104 44.000 0.00 0.00 33.58 1.75
435 436 5.620738 TGGGGATTGAGAGTTGAGAATAG 57.379 43.478 0.00 0.00 0.00 1.73
436 437 4.141620 TGGGGATTGAGAGTTGAGAATAGC 60.142 45.833 0.00 0.00 0.00 2.97
437 438 4.054671 GGGATTGAGAGTTGAGAATAGCG 58.945 47.826 0.00 0.00 0.00 4.26
438 439 4.054671 GGATTGAGAGTTGAGAATAGCGG 58.945 47.826 0.00 0.00 0.00 5.52
439 440 4.442192 GGATTGAGAGTTGAGAATAGCGGT 60.442 45.833 0.00 0.00 0.00 5.68
440 441 3.510388 TGAGAGTTGAGAATAGCGGTG 57.490 47.619 0.00 0.00 0.00 4.94
441 442 2.197577 GAGAGTTGAGAATAGCGGTGC 58.802 52.381 0.00 0.00 0.00 5.01
442 443 1.827969 AGAGTTGAGAATAGCGGTGCT 59.172 47.619 0.00 0.00 43.41 4.40
443 444 2.159170 AGAGTTGAGAATAGCGGTGCTC 60.159 50.000 0.00 2.13 40.44 4.26
444 445 1.827969 AGTTGAGAATAGCGGTGCTCT 59.172 47.619 0.00 0.00 40.44 4.09
445 446 1.929836 GTTGAGAATAGCGGTGCTCTG 59.070 52.381 0.00 0.00 40.44 3.35
446 447 0.179100 TGAGAATAGCGGTGCTCTGC 60.179 55.000 11.66 11.66 45.49 4.26
447 448 0.878086 GAGAATAGCGGTGCTCTGCC 60.878 60.000 15.72 0.95 46.23 4.85
453 454 2.494445 CGGTGCTCTGCCGTATGA 59.506 61.111 0.00 0.00 43.84 2.15
454 455 1.068083 CGGTGCTCTGCCGTATGAT 59.932 57.895 0.00 0.00 43.84 2.45
455 456 1.217585 CGGTGCTCTGCCGTATGATG 61.218 60.000 0.00 0.00 43.84 3.07
456 457 0.104855 GGTGCTCTGCCGTATGATGA 59.895 55.000 0.00 0.00 0.00 2.92
457 458 1.270518 GGTGCTCTGCCGTATGATGAT 60.271 52.381 0.00 0.00 0.00 2.45
458 459 1.797046 GTGCTCTGCCGTATGATGATG 59.203 52.381 0.00 0.00 0.00 3.07
459 460 1.688197 TGCTCTGCCGTATGATGATGA 59.312 47.619 0.00 0.00 0.00 2.92
460 461 2.301009 TGCTCTGCCGTATGATGATGAT 59.699 45.455 0.00 0.00 0.00 2.45
461 462 2.671888 GCTCTGCCGTATGATGATGATG 59.328 50.000 0.00 0.00 0.00 3.07
462 463 3.615834 GCTCTGCCGTATGATGATGATGA 60.616 47.826 0.00 0.00 0.00 2.92
463 464 4.563061 CTCTGCCGTATGATGATGATGAA 58.437 43.478 0.00 0.00 0.00 2.57
464 465 4.563061 TCTGCCGTATGATGATGATGAAG 58.437 43.478 0.00 0.00 0.00 3.02
465 466 4.281688 TCTGCCGTATGATGATGATGAAGA 59.718 41.667 0.00 0.00 0.00 2.87
466 467 5.046807 TCTGCCGTATGATGATGATGAAGAT 60.047 40.000 0.00 0.00 0.00 2.40
467 468 4.933400 TGCCGTATGATGATGATGAAGATG 59.067 41.667 0.00 0.00 0.00 2.90
468 469 5.173664 GCCGTATGATGATGATGAAGATGA 58.826 41.667 0.00 0.00 0.00 2.92
469 470 5.063186 GCCGTATGATGATGATGAAGATGAC 59.937 44.000 0.00 0.00 0.00 3.06
470 471 6.396450 CCGTATGATGATGATGAAGATGACT 58.604 40.000 0.00 0.00 0.00 3.41
471 472 7.542025 CCGTATGATGATGATGAAGATGACTA 58.458 38.462 0.00 0.00 0.00 2.59
472 473 7.701501 CCGTATGATGATGATGAAGATGACTAG 59.298 40.741 0.00 0.00 0.00 2.57
473 474 8.457261 CGTATGATGATGATGAAGATGACTAGA 58.543 37.037 0.00 0.00 0.00 2.43
479 480 9.848710 ATGATGATGAAGATGACTAGAAAATGT 57.151 29.630 0.00 0.00 0.00 2.71
480 481 9.676861 TGATGATGAAGATGACTAGAAAATGTT 57.323 29.630 0.00 0.00 0.00 2.71
481 482 9.932699 GATGATGAAGATGACTAGAAAATGTTG 57.067 33.333 0.00 0.00 0.00 3.33
482 483 8.853077 TGATGAAGATGACTAGAAAATGTTGT 57.147 30.769 0.00 0.00 0.00 3.32
483 484 9.288576 TGATGAAGATGACTAGAAAATGTTGTT 57.711 29.630 0.00 0.00 0.00 2.83
484 485 9.552114 GATGAAGATGACTAGAAAATGTTGTTG 57.448 33.333 0.00 0.00 0.00 3.33
485 486 8.450578 TGAAGATGACTAGAAAATGTTGTTGT 57.549 30.769 0.00 0.00 0.00 3.32
486 487 8.559536 TGAAGATGACTAGAAAATGTTGTTGTC 58.440 33.333 0.00 1.15 34.69 3.18
487 488 8.682936 AAGATGACTAGAAAATGTTGTTGTCT 57.317 30.769 8.43 0.00 35.01 3.41
488 489 8.092521 AGATGACTAGAAAATGTTGTTGTCTG 57.907 34.615 8.43 0.00 35.01 3.51
489 490 6.618287 TGACTAGAAAATGTTGTTGTCTGG 57.382 37.500 8.43 0.00 35.01 3.86
490 491 5.530915 TGACTAGAAAATGTTGTTGTCTGGG 59.469 40.000 8.43 0.00 35.01 4.45
491 492 5.690865 ACTAGAAAATGTTGTTGTCTGGGA 58.309 37.500 0.00 0.00 0.00 4.37
492 493 6.306987 ACTAGAAAATGTTGTTGTCTGGGAT 58.693 36.000 0.00 0.00 0.00 3.85
493 494 6.777580 ACTAGAAAATGTTGTTGTCTGGGATT 59.222 34.615 0.00 0.00 0.00 3.01
494 495 6.484364 AGAAAATGTTGTTGTCTGGGATTT 57.516 33.333 0.00 0.00 0.00 2.17
495 496 6.282930 AGAAAATGTTGTTGTCTGGGATTTG 58.717 36.000 0.00 0.00 0.00 2.32
496 497 5.612725 AAATGTTGTTGTCTGGGATTTGT 57.387 34.783 0.00 0.00 0.00 2.83
497 498 5.612725 AATGTTGTTGTCTGGGATTTGTT 57.387 34.783 0.00 0.00 0.00 2.83
498 499 4.383850 TGTTGTTGTCTGGGATTTGTTG 57.616 40.909 0.00 0.00 0.00 3.33
499 500 3.131933 TGTTGTTGTCTGGGATTTGTTGG 59.868 43.478 0.00 0.00 0.00 3.77
500 501 2.315176 TGTTGTCTGGGATTTGTTGGG 58.685 47.619 0.00 0.00 0.00 4.12
501 502 2.316108 GTTGTCTGGGATTTGTTGGGT 58.684 47.619 0.00 0.00 0.00 4.51
502 503 1.993956 TGTCTGGGATTTGTTGGGTG 58.006 50.000 0.00 0.00 0.00 4.61
503 504 1.256812 GTCTGGGATTTGTTGGGTGG 58.743 55.000 0.00 0.00 0.00 4.61
504 505 1.153539 TCTGGGATTTGTTGGGTGGA 58.846 50.000 0.00 0.00 0.00 4.02
505 506 1.715931 TCTGGGATTTGTTGGGTGGAT 59.284 47.619 0.00 0.00 0.00 3.41
506 507 1.826720 CTGGGATTTGTTGGGTGGATG 59.173 52.381 0.00 0.00 0.00 3.51
507 508 1.148867 TGGGATTTGTTGGGTGGATGT 59.851 47.619 0.00 0.00 0.00 3.06
508 509 2.256306 GGGATTTGTTGGGTGGATGTT 58.744 47.619 0.00 0.00 0.00 2.71
509 510 2.028203 GGGATTTGTTGGGTGGATGTTG 60.028 50.000 0.00 0.00 0.00 3.33
510 511 2.028203 GGATTTGTTGGGTGGATGTTGG 60.028 50.000 0.00 0.00 0.00 3.77
511 512 0.755686 TTTGTTGGGTGGATGTTGGC 59.244 50.000 0.00 0.00 0.00 4.52
512 513 0.105760 TTGTTGGGTGGATGTTGGCT 60.106 50.000 0.00 0.00 0.00 4.75
513 514 0.105760 TGTTGGGTGGATGTTGGCTT 60.106 50.000 0.00 0.00 0.00 4.35
514 515 0.318120 GTTGGGTGGATGTTGGCTTG 59.682 55.000 0.00 0.00 0.00 4.01
515 516 1.470996 TTGGGTGGATGTTGGCTTGC 61.471 55.000 0.00 0.00 0.00 4.01
516 517 1.607467 GGGTGGATGTTGGCTTGCT 60.607 57.895 0.00 0.00 0.00 3.91
517 518 1.588082 GGTGGATGTTGGCTTGCTG 59.412 57.895 0.00 0.00 0.00 4.41
518 519 0.895100 GGTGGATGTTGGCTTGCTGA 60.895 55.000 0.00 0.00 0.00 4.26
519 520 0.242017 GTGGATGTTGGCTTGCTGAC 59.758 55.000 0.00 0.00 0.00 3.51
520 521 0.895100 TGGATGTTGGCTTGCTGACC 60.895 55.000 0.00 0.00 0.00 4.02
521 522 0.895100 GGATGTTGGCTTGCTGACCA 60.895 55.000 0.00 0.00 0.00 4.02
522 523 0.242017 GATGTTGGCTTGCTGACCAC 59.758 55.000 0.00 0.00 35.10 4.16
523 524 1.181098 ATGTTGGCTTGCTGACCACC 61.181 55.000 0.00 0.00 35.10 4.61
524 525 2.203480 TTGGCTTGCTGACCACCC 60.203 61.111 0.00 0.00 35.10 4.61
525 526 3.808218 TTGGCTTGCTGACCACCCC 62.808 63.158 0.00 0.00 35.10 4.95
527 528 4.643387 GCTTGCTGACCACCCCGT 62.643 66.667 0.00 0.00 0.00 5.28
528 529 2.113139 CTTGCTGACCACCCCGTT 59.887 61.111 0.00 0.00 0.00 4.44
529 530 2.203280 TTGCTGACCACCCCGTTG 60.203 61.111 0.00 0.00 0.00 4.10
530 531 3.783362 TTGCTGACCACCCCGTTGG 62.783 63.158 0.00 0.00 43.04 3.77
560 561 2.517875 GCGCAAGGCTCCCATGAT 60.518 61.111 0.30 0.00 39.11 2.45
561 562 1.227943 GCGCAAGGCTCCCATGATA 60.228 57.895 0.30 0.00 39.11 2.15
562 563 1.233285 GCGCAAGGCTCCCATGATAG 61.233 60.000 0.30 0.00 39.11 2.08
563 564 0.394192 CGCAAGGCTCCCATGATAGA 59.606 55.000 0.00 0.00 0.00 1.98
564 565 1.002888 CGCAAGGCTCCCATGATAGAT 59.997 52.381 0.00 0.00 0.00 1.98
565 566 2.434428 GCAAGGCTCCCATGATAGATG 58.566 52.381 0.00 0.00 0.00 2.90
566 567 2.039480 GCAAGGCTCCCATGATAGATGA 59.961 50.000 0.00 0.00 0.00 2.92
567 568 3.308259 GCAAGGCTCCCATGATAGATGAT 60.308 47.826 0.00 0.00 0.00 2.45
568 569 4.262617 CAAGGCTCCCATGATAGATGATG 58.737 47.826 0.00 0.00 0.00 3.07
569 570 3.528976 AGGCTCCCATGATAGATGATGT 58.471 45.455 0.00 0.00 0.00 3.06
570 571 3.263681 AGGCTCCCATGATAGATGATGTG 59.736 47.826 0.00 0.00 0.00 3.21
571 572 3.008330 GCTCCCATGATAGATGATGTGC 58.992 50.000 0.00 0.00 0.00 4.57
572 573 3.307550 GCTCCCATGATAGATGATGTGCT 60.308 47.826 0.00 0.00 0.00 4.40
573 574 4.254492 CTCCCATGATAGATGATGTGCTG 58.746 47.826 0.00 0.00 0.00 4.41
574 575 3.008704 TCCCATGATAGATGATGTGCTGG 59.991 47.826 0.00 0.00 0.00 4.85
575 576 3.244805 CCCATGATAGATGATGTGCTGGT 60.245 47.826 0.00 0.00 0.00 4.00
576 577 4.395625 CCATGATAGATGATGTGCTGGTT 58.604 43.478 0.00 0.00 0.00 3.67
577 578 4.454847 CCATGATAGATGATGTGCTGGTTC 59.545 45.833 0.00 0.00 0.00 3.62
578 579 4.758773 TGATAGATGATGTGCTGGTTCA 57.241 40.909 0.00 0.00 0.00 3.18
579 580 5.101648 TGATAGATGATGTGCTGGTTCAA 57.898 39.130 0.00 0.00 0.00 2.69
580 581 5.499313 TGATAGATGATGTGCTGGTTCAAA 58.501 37.500 0.00 0.00 0.00 2.69
581 582 5.355071 TGATAGATGATGTGCTGGTTCAAAC 59.645 40.000 0.00 0.00 0.00 2.93
582 583 2.485426 AGATGATGTGCTGGTTCAAACG 59.515 45.455 0.00 0.00 0.00 3.60
583 584 1.674359 TGATGTGCTGGTTCAAACGT 58.326 45.000 0.00 0.00 0.00 3.99
584 585 1.333308 TGATGTGCTGGTTCAAACGTG 59.667 47.619 0.00 0.00 0.00 4.49
585 586 0.030638 ATGTGCTGGTTCAAACGTGC 59.969 50.000 0.00 0.00 0.00 5.34
586 587 1.029408 TGTGCTGGTTCAAACGTGCT 61.029 50.000 0.00 0.00 0.00 4.40
587 588 0.592247 GTGCTGGTTCAAACGTGCTG 60.592 55.000 0.00 0.00 0.00 4.41
588 589 1.658409 GCTGGTTCAAACGTGCTGC 60.658 57.895 0.00 0.00 0.00 5.25
763 764 3.363351 TGCGACATTTGGCATGCA 58.637 50.000 21.36 2.54 33.52 3.96
912 935 2.517402 TTTGCCGTCGCCCTTGTT 60.517 55.556 0.00 0.00 0.00 2.83
940 963 2.663196 CGTCTTCGCCTTCCCCTT 59.337 61.111 0.00 0.00 0.00 3.95
1813 2069 1.239968 CCTGTTTGGTCTGCTGCTCC 61.240 60.000 0.00 1.75 0.00 4.70
2220 2596 1.213296 GCCCAGGGATCTTCAGGTAA 58.787 55.000 10.89 0.00 0.00 2.85
2683 3070 2.185350 CGGCAGGAGCTCGACATT 59.815 61.111 7.83 0.00 41.70 2.71
2706 3093 3.776158 GCATGTTTCTGCCACCCA 58.224 55.556 0.00 0.00 36.10 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.817709 TTCCTGTTTTGCCAAGAAAGG 57.182 42.857 0.00 0.00 0.00 3.11
5 6 4.934602 TGTTTTCCTGTTTTGCCAAGAAAG 59.065 37.500 0.00 0.00 29.23 2.62
10 11 4.478206 TCATGTTTTCCTGTTTTGCCAA 57.522 36.364 0.00 0.00 0.00 4.52
11 12 4.378774 CATCATGTTTTCCTGTTTTGCCA 58.621 39.130 0.00 0.00 0.00 4.92
12 13 3.187022 GCATCATGTTTTCCTGTTTTGCC 59.813 43.478 0.00 0.00 0.00 4.52
13 14 4.060205 AGCATCATGTTTTCCTGTTTTGC 58.940 39.130 0.00 0.00 0.00 3.68
14 15 5.291178 TGAGCATCATGTTTTCCTGTTTTG 58.709 37.500 0.00 0.00 42.56 2.44
15 16 5.534207 TGAGCATCATGTTTTCCTGTTTT 57.466 34.783 0.00 0.00 42.56 2.43
34 35 1.654317 GCTGTCATCTGCTCCTTGAG 58.346 55.000 0.00 0.00 35.98 3.02
35 36 0.251354 GGCTGTCATCTGCTCCTTGA 59.749 55.000 0.00 0.00 38.34 3.02
36 37 1.088340 CGGCTGTCATCTGCTCCTTG 61.088 60.000 0.00 0.00 38.34 3.61
37 38 1.220206 CGGCTGTCATCTGCTCCTT 59.780 57.895 0.00 0.00 38.34 3.36
38 39 1.954362 GACGGCTGTCATCTGCTCCT 61.954 60.000 21.02 0.00 44.82 3.69
39 40 1.520342 GACGGCTGTCATCTGCTCC 60.520 63.158 21.02 0.00 44.82 4.70
40 41 4.100981 GACGGCTGTCATCTGCTC 57.899 61.111 21.02 0.00 44.82 4.26
48 49 4.357947 TGCGACAGGACGGCTGTC 62.358 66.667 17.83 17.83 45.44 3.51
49 50 4.363990 CTGCGACAGGACGGCTGT 62.364 66.667 0.00 0.00 37.81 4.40
50 51 3.573772 TTCTGCGACAGGACGGCTG 62.574 63.158 6.95 0.00 31.51 4.85
51 52 3.303135 TTCTGCGACAGGACGGCT 61.303 61.111 6.95 0.00 31.51 5.52
52 53 3.112709 GTTCTGCGACAGGACGGC 61.113 66.667 6.95 0.00 29.75 5.68
63 64 2.357034 TTCAGGACCGCGTTCTGC 60.357 61.111 4.92 0.00 38.92 4.26
64 65 2.383527 GCTTCAGGACCGCGTTCTG 61.384 63.158 4.92 9.72 40.32 3.02
65 66 2.048127 GCTTCAGGACCGCGTTCT 60.048 61.111 4.92 0.00 0.00 3.01
66 67 3.479269 CGCTTCAGGACCGCGTTC 61.479 66.667 4.92 0.00 41.78 3.95
87 88 4.451150 TCGTGCTGGATCGCCACC 62.451 66.667 4.19 0.00 39.92 4.61
88 89 2.887568 CTCGTGCTGGATCGCCAC 60.888 66.667 0.00 0.00 39.92 5.01
89 90 4.819761 GCTCGTGCTGGATCGCCA 62.820 66.667 1.41 0.00 43.47 5.69
93 94 4.819761 TGCCGCTCGTGCTGGATC 62.820 66.667 19.50 7.43 35.80 3.36
94 95 4.827087 CTGCCGCTCGTGCTGGAT 62.827 66.667 19.50 0.00 35.80 3.41
97 98 3.485431 CTTCTGCCGCTCGTGCTG 61.485 66.667 7.97 1.93 36.97 4.41
98 99 4.749310 CCTTCTGCCGCTCGTGCT 62.749 66.667 7.97 0.00 36.97 4.40
99 100 4.742201 TCCTTCTGCCGCTCGTGC 62.742 66.667 0.00 0.00 0.00 5.34
100 101 2.507992 CTCCTTCTGCCGCTCGTG 60.508 66.667 0.00 0.00 0.00 4.35
101 102 2.100879 AAACTCCTTCTGCCGCTCGT 62.101 55.000 0.00 0.00 0.00 4.18
102 103 1.374758 AAACTCCTTCTGCCGCTCG 60.375 57.895 0.00 0.00 0.00 5.03
103 104 0.320771 TCAAACTCCTTCTGCCGCTC 60.321 55.000 0.00 0.00 0.00 5.03
104 105 0.603975 GTCAAACTCCTTCTGCCGCT 60.604 55.000 0.00 0.00 0.00 5.52
105 106 1.869690 GTCAAACTCCTTCTGCCGC 59.130 57.895 0.00 0.00 0.00 6.53
106 107 0.319555 TCGTCAAACTCCTTCTGCCG 60.320 55.000 0.00 0.00 0.00 5.69
107 108 1.433534 CTCGTCAAACTCCTTCTGCC 58.566 55.000 0.00 0.00 0.00 4.85
108 109 0.793250 GCTCGTCAAACTCCTTCTGC 59.207 55.000 0.00 0.00 0.00 4.26
109 110 1.063806 CGCTCGTCAAACTCCTTCTG 58.936 55.000 0.00 0.00 0.00 3.02
110 111 0.038159 CCGCTCGTCAAACTCCTTCT 60.038 55.000 0.00 0.00 0.00 2.85
111 112 0.038526 TCCGCTCGTCAAACTCCTTC 60.039 55.000 0.00 0.00 0.00 3.46
112 113 0.038159 CTCCGCTCGTCAAACTCCTT 60.038 55.000 0.00 0.00 0.00 3.36
113 114 1.587054 CTCCGCTCGTCAAACTCCT 59.413 57.895 0.00 0.00 0.00 3.69
114 115 2.095252 GCTCCGCTCGTCAAACTCC 61.095 63.158 0.00 0.00 0.00 3.85
115 116 0.944311 TTGCTCCGCTCGTCAAACTC 60.944 55.000 0.00 0.00 0.00 3.01
116 117 1.069090 TTGCTCCGCTCGTCAAACT 59.931 52.632 0.00 0.00 0.00 2.66
117 118 1.204312 GTTGCTCCGCTCGTCAAAC 59.796 57.895 0.00 0.00 0.00 2.93
118 119 2.307309 CGTTGCTCCGCTCGTCAAA 61.307 57.895 0.00 0.00 0.00 2.69
119 120 2.733218 CGTTGCTCCGCTCGTCAA 60.733 61.111 0.00 0.00 0.00 3.18
120 121 3.610791 CTCGTTGCTCCGCTCGTCA 62.611 63.158 0.00 0.00 0.00 4.35
121 122 2.876645 CTCGTTGCTCCGCTCGTC 60.877 66.667 0.00 0.00 0.00 4.20
122 123 4.421479 CCTCGTTGCTCCGCTCGT 62.421 66.667 0.00 0.00 0.00 4.18
123 124 4.421479 ACCTCGTTGCTCCGCTCG 62.421 66.667 0.00 0.00 0.00 5.03
124 125 2.811317 CACCTCGTTGCTCCGCTC 60.811 66.667 0.00 0.00 0.00 5.03
127 128 3.114616 CTGCACCTCGTTGCTCCG 61.115 66.667 7.69 0.00 43.41 4.63
128 129 2.743928 CCTGCACCTCGTTGCTCC 60.744 66.667 7.69 0.00 43.41 4.70
129 130 2.743928 CCCTGCACCTCGTTGCTC 60.744 66.667 7.69 0.00 43.41 4.26
132 133 4.335647 AGGCCCTGCACCTCGTTG 62.336 66.667 0.00 0.00 28.76 4.10
133 134 4.335647 CAGGCCCTGCACCTCGTT 62.336 66.667 0.00 0.00 34.42 3.85
135 136 3.965539 CTTCAGGCCCTGCACCTCG 62.966 68.421 5.66 0.00 34.42 4.63
136 137 2.045536 CTTCAGGCCCTGCACCTC 60.046 66.667 5.66 0.00 34.42 3.85
137 138 4.357279 GCTTCAGGCCCTGCACCT 62.357 66.667 5.66 0.00 38.35 4.00
138 139 4.666253 TGCTTCAGGCCCTGCACC 62.666 66.667 5.66 0.00 40.92 5.01
139 140 3.060615 CTGCTTCAGGCCCTGCAC 61.061 66.667 5.66 0.00 40.92 4.57
141 142 4.737177 AGCTGCTTCAGGCCCTGC 62.737 66.667 5.66 0.00 40.92 4.85
142 143 2.438075 GAGCTGCTTCAGGCCCTG 60.438 66.667 3.69 3.69 40.92 4.45
143 144 4.093291 CGAGCTGCTTCAGGCCCT 62.093 66.667 2.53 0.00 40.92 5.19
144 145 4.400961 ACGAGCTGCTTCAGGCCC 62.401 66.667 2.53 0.00 40.92 5.80
145 146 2.817396 GACGAGCTGCTTCAGGCC 60.817 66.667 2.53 0.00 40.92 5.19
146 147 2.817396 GGACGAGCTGCTTCAGGC 60.817 66.667 2.53 0.38 42.22 4.85
147 148 1.447489 CAGGACGAGCTGCTTCAGG 60.447 63.158 2.53 0.00 31.21 3.86
148 149 2.099431 GCAGGACGAGCTGCTTCAG 61.099 63.158 2.53 1.19 42.73 3.02
149 150 2.047844 GCAGGACGAGCTGCTTCA 60.048 61.111 2.53 0.00 42.73 3.02
150 151 2.047844 TGCAGGACGAGCTGCTTC 60.048 61.111 2.53 0.00 45.87 3.86
151 152 1.536073 TACTGCAGGACGAGCTGCTT 61.536 55.000 19.93 0.00 45.87 3.91
152 153 1.979155 TACTGCAGGACGAGCTGCT 60.979 57.895 19.93 0.00 45.87 4.24
153 154 1.807573 GTACTGCAGGACGAGCTGC 60.808 63.158 14.67 0.00 45.89 5.25
154 155 1.153745 GGTACTGCAGGACGAGCTG 60.154 63.158 22.77 0.00 37.04 4.24
155 156 1.599606 CTGGTACTGCAGGACGAGCT 61.600 60.000 25.81 1.95 0.00 4.09
156 157 1.153745 CTGGTACTGCAGGACGAGC 60.154 63.158 25.81 12.07 0.00 5.03
157 158 0.965866 TCCTGGTACTGCAGGACGAG 60.966 60.000 29.01 29.01 42.20 4.18
158 159 0.965866 CTCCTGGTACTGCAGGACGA 60.966 60.000 22.77 18.28 42.20 4.20
159 160 1.513158 CTCCTGGTACTGCAGGACG 59.487 63.158 22.77 9.93 42.20 4.79
160 161 1.219393 GCTCCTGGTACTGCAGGAC 59.781 63.158 21.65 21.65 42.20 3.85
161 162 1.229177 TGCTCCTGGTACTGCAGGA 60.229 57.895 19.93 17.03 44.60 3.86
162 163 1.220206 CTGCTCCTGGTACTGCAGG 59.780 63.158 19.93 10.96 46.24 4.85
163 164 4.928398 CTGCTCCTGGTACTGCAG 57.072 61.111 13.48 13.48 45.15 4.41
164 165 1.915266 AGCTGCTCCTGGTACTGCA 60.915 57.895 17.47 12.16 0.00 4.41
165 166 1.449246 CAGCTGCTCCTGGTACTGC 60.449 63.158 0.00 10.79 0.00 4.40
166 167 0.175302 CTCAGCTGCTCCTGGTACTG 59.825 60.000 9.47 0.00 33.64 2.74
167 168 0.975040 CCTCAGCTGCTCCTGGTACT 60.975 60.000 9.47 0.00 33.64 2.73
168 169 0.972983 TCCTCAGCTGCTCCTGGTAC 60.973 60.000 9.47 0.00 33.64 3.34
169 170 0.972983 GTCCTCAGCTGCTCCTGGTA 60.973 60.000 9.47 0.00 33.64 3.25
170 171 2.121385 TCCTCAGCTGCTCCTGGT 59.879 61.111 9.47 0.00 33.64 4.00
171 172 1.958902 GAGTCCTCAGCTGCTCCTGG 61.959 65.000 9.47 6.05 33.64 4.45
172 173 0.971959 AGAGTCCTCAGCTGCTCCTG 60.972 60.000 9.47 0.00 0.00 3.86
173 174 0.684153 GAGAGTCCTCAGCTGCTCCT 60.684 60.000 9.47 1.54 39.24 3.69
174 175 1.815866 GAGAGTCCTCAGCTGCTCC 59.184 63.158 9.47 0.89 39.24 4.70
175 176 1.029408 TCGAGAGTCCTCAGCTGCTC 61.029 60.000 9.47 9.90 39.39 4.26
176 177 1.001517 TCGAGAGTCCTCAGCTGCT 60.002 57.895 9.47 0.00 39.39 4.24
177 178 1.433064 CTCGAGAGTCCTCAGCTGC 59.567 63.158 9.47 0.00 39.39 5.25
178 179 0.679640 ACCTCGAGAGTCCTCAGCTG 60.680 60.000 15.71 7.63 39.39 4.24
179 180 0.679640 CACCTCGAGAGTCCTCAGCT 60.680 60.000 15.71 0.00 39.39 4.24
180 181 0.678366 TCACCTCGAGAGTCCTCAGC 60.678 60.000 15.71 0.00 39.39 4.26
181 182 1.091537 GTCACCTCGAGAGTCCTCAG 58.908 60.000 15.71 0.00 39.39 3.35
182 183 0.673956 CGTCACCTCGAGAGTCCTCA 60.674 60.000 15.71 0.00 39.39 3.86
183 184 0.391395 TCGTCACCTCGAGAGTCCTC 60.391 60.000 15.71 2.56 34.85 3.71
184 185 0.253610 ATCGTCACCTCGAGAGTCCT 59.746 55.000 15.71 0.00 43.00 3.85
185 186 0.658897 GATCGTCACCTCGAGAGTCC 59.341 60.000 15.71 2.58 43.00 3.85
186 187 0.302288 CGATCGTCACCTCGAGAGTC 59.698 60.000 15.71 3.09 43.00 3.36
187 188 0.108281 TCGATCGTCACCTCGAGAGT 60.108 55.000 15.71 7.40 43.00 3.24
188 189 0.302288 GTCGATCGTCACCTCGAGAG 59.698 60.000 15.71 6.69 43.86 3.20
189 190 1.088340 GGTCGATCGTCACCTCGAGA 61.088 60.000 15.71 0.00 43.86 4.04
190 191 1.352404 GGTCGATCGTCACCTCGAG 59.648 63.158 15.94 5.13 43.86 4.04
191 192 2.110967 GGGTCGATCGTCACCTCGA 61.111 63.158 21.34 0.00 43.86 4.04
192 193 0.812811 TAGGGTCGATCGTCACCTCG 60.813 60.000 23.76 0.00 36.25 4.63
193 194 0.945813 CTAGGGTCGATCGTCACCTC 59.054 60.000 23.76 15.03 32.69 3.85
194 195 0.465824 CCTAGGGTCGATCGTCACCT 60.466 60.000 21.34 22.59 32.69 4.00
195 196 2.031360 CCTAGGGTCGATCGTCACC 58.969 63.158 15.94 15.83 0.00 4.02
196 197 1.359475 GCCTAGGGTCGATCGTCAC 59.641 63.158 15.94 11.14 0.00 3.67
197 198 1.826921 GGCCTAGGGTCGATCGTCA 60.827 63.158 15.94 0.00 0.00 4.35
198 199 2.562876 GGGCCTAGGGTCGATCGTC 61.563 68.421 15.94 9.66 0.00 4.20
199 200 2.521224 GGGCCTAGGGTCGATCGT 60.521 66.667 15.94 0.00 0.00 3.73
200 201 3.303928 GGGGCCTAGGGTCGATCG 61.304 72.222 11.72 9.36 0.00 3.69
201 202 1.909287 GAGGGGCCTAGGGTCGATC 60.909 68.421 11.72 0.00 0.00 3.69
202 203 2.201771 GAGGGGCCTAGGGTCGAT 59.798 66.667 11.72 0.00 0.00 3.59
203 204 4.153330 GGAGGGGCCTAGGGTCGA 62.153 72.222 11.72 0.00 0.00 4.20
220 221 3.057315 AGGATGTGTGAATTTGCCGAAAG 60.057 43.478 0.00 0.00 0.00 2.62
221 222 2.890311 AGGATGTGTGAATTTGCCGAAA 59.110 40.909 0.00 0.00 0.00 3.46
222 223 2.513753 AGGATGTGTGAATTTGCCGAA 58.486 42.857 0.00 0.00 0.00 4.30
223 224 2.198827 AGGATGTGTGAATTTGCCGA 57.801 45.000 0.00 0.00 0.00 5.54
224 225 3.302365 AAAGGATGTGTGAATTTGCCG 57.698 42.857 0.00 0.00 0.00 5.69
225 226 4.687483 CAGAAAAGGATGTGTGAATTTGCC 59.313 41.667 0.00 0.00 0.00 4.52
226 227 5.291971 ACAGAAAAGGATGTGTGAATTTGC 58.708 37.500 0.00 0.00 0.00 3.68
227 228 7.492020 TCAAACAGAAAAGGATGTGTGAATTTG 59.508 33.333 0.00 0.00 40.00 2.32
228 229 7.555087 TCAAACAGAAAAGGATGTGTGAATTT 58.445 30.769 0.00 0.00 40.00 1.82
229 230 7.111247 TCAAACAGAAAAGGATGTGTGAATT 57.889 32.000 0.00 0.00 40.00 2.17
230 231 6.713762 TCAAACAGAAAAGGATGTGTGAAT 57.286 33.333 0.00 0.00 40.00 2.57
231 232 6.320926 TCATCAAACAGAAAAGGATGTGTGAA 59.679 34.615 2.57 0.00 44.61 3.18
232 233 5.827267 TCATCAAACAGAAAAGGATGTGTGA 59.173 36.000 0.99 0.99 45.30 3.58
233 234 5.916883 GTCATCAAACAGAAAAGGATGTGTG 59.083 40.000 0.00 0.00 37.29 3.82
234 235 5.593909 TGTCATCAAACAGAAAAGGATGTGT 59.406 36.000 0.00 0.00 37.29 3.72
235 236 6.075762 TGTCATCAAACAGAAAAGGATGTG 57.924 37.500 0.00 0.00 37.29 3.21
236 237 6.906157 ATGTCATCAAACAGAAAAGGATGT 57.094 33.333 0.00 0.00 37.29 3.06
237 238 8.680001 TCATATGTCATCAAACAGAAAAGGATG 58.320 33.333 1.90 0.00 37.33 3.51
238 239 8.812513 TCATATGTCATCAAACAGAAAAGGAT 57.187 30.769 1.90 0.00 31.50 3.24
239 240 8.514594 GTTCATATGTCATCAAACAGAAAAGGA 58.485 33.333 1.90 0.00 31.50 3.36
240 241 8.517878 AGTTCATATGTCATCAAACAGAAAAGG 58.482 33.333 1.90 0.00 31.50 3.11
241 242 9.338291 CAGTTCATATGTCATCAAACAGAAAAG 57.662 33.333 1.90 0.00 31.50 2.27
242 243 9.065798 TCAGTTCATATGTCATCAAACAGAAAA 57.934 29.630 1.90 0.00 31.50 2.29
243 244 8.620116 TCAGTTCATATGTCATCAAACAGAAA 57.380 30.769 1.90 0.00 31.50 2.52
244 245 8.620116 TTCAGTTCATATGTCATCAAACAGAA 57.380 30.769 1.90 4.82 31.50 3.02
245 246 8.096414 TCTTCAGTTCATATGTCATCAAACAGA 58.904 33.333 1.90 0.00 31.50 3.41
246 247 8.260270 TCTTCAGTTCATATGTCATCAAACAG 57.740 34.615 1.90 0.00 31.50 3.16
247 248 8.620116 TTCTTCAGTTCATATGTCATCAAACA 57.380 30.769 1.90 0.00 0.00 2.83
248 249 9.713740 GATTCTTCAGTTCATATGTCATCAAAC 57.286 33.333 1.90 0.00 0.00 2.93
249 250 9.676861 AGATTCTTCAGTTCATATGTCATCAAA 57.323 29.630 1.90 0.00 0.00 2.69
251 252 9.755804 GTAGATTCTTCAGTTCATATGTCATCA 57.244 33.333 1.90 0.00 0.00 3.07
252 253 9.979578 AGTAGATTCTTCAGTTCATATGTCATC 57.020 33.333 1.90 0.00 0.00 2.92
256 257 9.950496 ACAAAGTAGATTCTTCAGTTCATATGT 57.050 29.630 1.90 0.00 0.00 2.29
258 259 9.950496 ACACAAAGTAGATTCTTCAGTTCATAT 57.050 29.630 0.00 0.00 0.00 1.78
259 260 9.424319 GACACAAAGTAGATTCTTCAGTTCATA 57.576 33.333 0.00 0.00 0.00 2.15
260 261 7.116948 CGACACAAAGTAGATTCTTCAGTTCAT 59.883 37.037 0.00 0.00 0.00 2.57
261 262 6.420903 CGACACAAAGTAGATTCTTCAGTTCA 59.579 38.462 0.00 0.00 0.00 3.18
262 263 6.616682 GCGACACAAAGTAGATTCTTCAGTTC 60.617 42.308 0.00 0.00 0.00 3.01
263 264 5.177696 GCGACACAAAGTAGATTCTTCAGTT 59.822 40.000 0.00 0.00 0.00 3.16
264 265 4.686554 GCGACACAAAGTAGATTCTTCAGT 59.313 41.667 0.00 0.00 0.00 3.41
265 266 4.686091 TGCGACACAAAGTAGATTCTTCAG 59.314 41.667 0.00 0.00 0.00 3.02
266 267 4.627058 TGCGACACAAAGTAGATTCTTCA 58.373 39.130 0.00 0.00 0.00 3.02
267 268 4.923871 TCTGCGACACAAAGTAGATTCTTC 59.076 41.667 0.00 0.00 0.00 2.87
268 269 4.883083 TCTGCGACACAAAGTAGATTCTT 58.117 39.130 0.00 0.00 0.00 2.52
269 270 4.521130 TCTGCGACACAAAGTAGATTCT 57.479 40.909 0.00 0.00 0.00 2.40
270 271 4.864806 TGATCTGCGACACAAAGTAGATTC 59.135 41.667 0.00 0.00 39.34 2.52
271 272 4.820897 TGATCTGCGACACAAAGTAGATT 58.179 39.130 0.00 0.00 39.34 2.40
272 273 4.456280 TGATCTGCGACACAAAGTAGAT 57.544 40.909 0.00 0.00 41.35 1.98
273 274 3.934457 TGATCTGCGACACAAAGTAGA 57.066 42.857 0.00 0.00 33.88 2.59
274 275 3.740832 TGTTGATCTGCGACACAAAGTAG 59.259 43.478 0.00 0.00 35.96 2.57
275 276 3.723260 TGTTGATCTGCGACACAAAGTA 58.277 40.909 0.00 0.00 35.96 2.24
276 277 2.560504 TGTTGATCTGCGACACAAAGT 58.439 42.857 0.00 0.00 35.96 2.66
277 278 3.002656 AGTTGTTGATCTGCGACACAAAG 59.997 43.478 0.00 0.00 40.60 2.77
278 279 2.942376 AGTTGTTGATCTGCGACACAAA 59.058 40.909 0.00 0.00 40.60 2.83
279 280 2.560504 AGTTGTTGATCTGCGACACAA 58.439 42.857 0.00 0.00 40.60 3.33
280 281 2.238942 AGTTGTTGATCTGCGACACA 57.761 45.000 0.00 0.00 40.60 3.72
281 282 2.090658 CGTAGTTGTTGATCTGCGACAC 59.909 50.000 0.00 0.00 40.60 3.67
282 283 2.324860 CGTAGTTGTTGATCTGCGACA 58.675 47.619 0.00 0.00 40.93 4.35
283 284 1.059264 GCGTAGTTGTTGATCTGCGAC 59.941 52.381 6.82 0.00 40.93 5.19
284 285 1.346365 GCGTAGTTGTTGATCTGCGA 58.654 50.000 6.82 0.00 40.93 5.10
285 286 0.023732 CGCGTAGTTGTTGATCTGCG 59.976 55.000 0.00 0.00 41.26 5.18
286 287 0.247301 GCGCGTAGTTGTTGATCTGC 60.247 55.000 8.43 0.00 0.00 4.26
287 288 1.059692 CAGCGCGTAGTTGTTGATCTG 59.940 52.381 8.43 0.00 0.00 2.90
288 289 1.350193 CAGCGCGTAGTTGTTGATCT 58.650 50.000 8.43 0.00 0.00 2.75
289 290 0.247301 GCAGCGCGTAGTTGTTGATC 60.247 55.000 8.43 0.00 33.27 2.92
290 291 0.948623 TGCAGCGCGTAGTTGTTGAT 60.949 50.000 8.43 0.00 33.27 2.57
291 292 1.556591 CTGCAGCGCGTAGTTGTTGA 61.557 55.000 8.43 0.00 33.27 3.18
292 293 1.154599 CTGCAGCGCGTAGTTGTTG 60.155 57.895 8.43 0.00 33.27 3.33
293 294 0.670546 ATCTGCAGCGCGTAGTTGTT 60.671 50.000 9.47 0.00 33.27 2.83
294 295 1.079819 ATCTGCAGCGCGTAGTTGT 60.080 52.632 9.47 0.00 33.27 3.32
295 296 1.346197 CATCTGCAGCGCGTAGTTG 59.654 57.895 9.47 7.76 0.00 3.16
296 297 2.456119 GCATCTGCAGCGCGTAGTT 61.456 57.895 9.47 0.00 41.59 2.24
297 298 2.887568 GCATCTGCAGCGCGTAGT 60.888 61.111 9.47 0.00 41.59 2.73
309 310 0.465824 GGCCTGCTTCAGATGCATCT 60.466 55.000 23.75 23.75 39.86 2.90
310 311 1.453762 GGGCCTGCTTCAGATGCATC 61.454 60.000 19.37 19.37 39.86 3.91
311 312 1.455217 GGGCCTGCTTCAGATGCAT 60.455 57.895 11.23 0.00 39.86 3.96
312 313 2.044650 GGGCCTGCTTCAGATGCA 60.045 61.111 10.42 10.42 38.81 3.96
313 314 2.044650 TGGGCCTGCTTCAGATGC 60.045 61.111 4.53 1.18 32.44 3.91
314 315 2.119655 GCTGGGCCTGCTTCAGATG 61.120 63.158 26.17 0.00 32.44 2.90
315 316 2.274760 GCTGGGCCTGCTTCAGAT 59.725 61.111 26.17 0.00 32.44 2.90
316 317 3.251509 TGCTGGGCCTGCTTCAGA 61.252 61.111 31.52 12.14 32.44 3.27
317 318 2.750637 CTGCTGGGCCTGCTTCAG 60.751 66.667 31.52 19.31 0.00 3.02
318 319 3.251509 TCTGCTGGGCCTGCTTCA 61.252 61.111 31.52 14.29 0.00 3.02
319 320 2.438075 CTCTGCTGGGCCTGCTTC 60.438 66.667 31.52 8.12 0.00 3.86
320 321 4.737177 GCTCTGCTGGGCCTGCTT 62.737 66.667 31.52 0.00 0.00 3.91
327 328 3.045267 ATGGAGCTGCTCTGCTGGG 62.045 63.158 27.09 0.00 44.17 4.45
328 329 1.820056 CATGGAGCTGCTCTGCTGG 60.820 63.158 27.09 10.47 44.17 4.85
329 330 2.473760 GCATGGAGCTGCTCTGCTG 61.474 63.158 27.07 21.73 44.17 4.41
331 332 3.210528 GGCATGGAGCTGCTCTGC 61.211 66.667 26.66 26.66 44.79 4.26
332 333 2.516460 GGGCATGGAGCTGCTCTG 60.516 66.667 27.09 19.66 44.79 3.35
333 334 4.172512 CGGGCATGGAGCTGCTCT 62.173 66.667 27.09 7.60 40.63 4.09
352 353 4.729856 ACGTCCGGGTTGTAGCGC 62.730 66.667 0.00 0.00 0.00 5.92
353 354 2.482296 AAGACGTCCGGGTTGTAGCG 62.482 60.000 13.01 0.00 0.00 4.26
354 355 0.735287 GAAGACGTCCGGGTTGTAGC 60.735 60.000 13.01 0.00 0.00 3.58
355 356 0.886563 AGAAGACGTCCGGGTTGTAG 59.113 55.000 13.01 0.00 0.00 2.74
356 357 2.198827 TAGAAGACGTCCGGGTTGTA 57.801 50.000 13.01 0.00 0.00 2.41
357 358 1.331214 TTAGAAGACGTCCGGGTTGT 58.669 50.000 13.01 0.79 0.00 3.32
358 359 2.667473 ATTAGAAGACGTCCGGGTTG 57.333 50.000 13.01 0.00 0.00 3.77
359 360 3.332034 CAAATTAGAAGACGTCCGGGTT 58.668 45.455 13.01 0.00 0.00 4.11
360 361 2.354403 CCAAATTAGAAGACGTCCGGGT 60.354 50.000 13.01 0.00 0.00 5.28
361 362 2.277084 CCAAATTAGAAGACGTCCGGG 58.723 52.381 13.01 0.00 0.00 5.73
362 363 1.664151 GCCAAATTAGAAGACGTCCGG 59.336 52.381 13.01 0.00 0.00 5.14
363 364 2.618053 AGCCAAATTAGAAGACGTCCG 58.382 47.619 13.01 0.00 0.00 4.79
364 365 4.000988 TCAAGCCAAATTAGAAGACGTCC 58.999 43.478 13.01 0.00 0.00 4.79
365 366 4.093556 CCTCAAGCCAAATTAGAAGACGTC 59.906 45.833 7.70 7.70 0.00 4.34
366 367 4.003648 CCTCAAGCCAAATTAGAAGACGT 58.996 43.478 0.00 0.00 0.00 4.34
367 368 3.375299 CCCTCAAGCCAAATTAGAAGACG 59.625 47.826 0.00 0.00 0.00 4.18
368 369 4.156739 CACCCTCAAGCCAAATTAGAAGAC 59.843 45.833 0.00 0.00 0.00 3.01
369 370 4.042809 TCACCCTCAAGCCAAATTAGAAGA 59.957 41.667 0.00 0.00 0.00 2.87
370 371 4.335416 TCACCCTCAAGCCAAATTAGAAG 58.665 43.478 0.00 0.00 0.00 2.85
371 372 4.380843 TCACCCTCAAGCCAAATTAGAA 57.619 40.909 0.00 0.00 0.00 2.10
372 373 4.018506 TCATCACCCTCAAGCCAAATTAGA 60.019 41.667 0.00 0.00 0.00 2.10
373 374 4.272489 TCATCACCCTCAAGCCAAATTAG 58.728 43.478 0.00 0.00 0.00 1.73
374 375 4.314522 TCATCACCCTCAAGCCAAATTA 57.685 40.909 0.00 0.00 0.00 1.40
375 376 3.173953 TCATCACCCTCAAGCCAAATT 57.826 42.857 0.00 0.00 0.00 1.82
376 377 2.905415 TCATCACCCTCAAGCCAAAT 57.095 45.000 0.00 0.00 0.00 2.32
377 378 2.449464 CATCATCACCCTCAAGCCAAA 58.551 47.619 0.00 0.00 0.00 3.28
378 379 1.341285 CCATCATCACCCTCAAGCCAA 60.341 52.381 0.00 0.00 0.00 4.52
379 380 0.256752 CCATCATCACCCTCAAGCCA 59.743 55.000 0.00 0.00 0.00 4.75
380 381 0.257039 ACCATCATCACCCTCAAGCC 59.743 55.000 0.00 0.00 0.00 4.35
381 382 1.065199 TCACCATCATCACCCTCAAGC 60.065 52.381 0.00 0.00 0.00 4.01
382 383 2.915349 CTCACCATCATCACCCTCAAG 58.085 52.381 0.00 0.00 0.00 3.02
383 384 1.065199 GCTCACCATCATCACCCTCAA 60.065 52.381 0.00 0.00 0.00 3.02
384 385 0.543277 GCTCACCATCATCACCCTCA 59.457 55.000 0.00 0.00 0.00 3.86
385 386 0.179034 GGCTCACCATCATCACCCTC 60.179 60.000 0.00 0.00 35.26 4.30
386 387 1.639635 GGGCTCACCATCATCACCCT 61.640 60.000 0.00 0.00 39.85 4.34
387 388 1.152881 GGGCTCACCATCATCACCC 60.153 63.158 0.00 0.00 39.85 4.61
388 389 0.465097 CAGGGCTCACCATCATCACC 60.465 60.000 0.00 0.00 43.89 4.02
389 390 0.465097 CCAGGGCTCACCATCATCAC 60.465 60.000 0.00 0.00 43.89 3.06
390 391 1.917495 CCAGGGCTCACCATCATCA 59.083 57.895 0.00 0.00 43.89 3.07
391 392 1.527844 GCCAGGGCTCACCATCATC 60.528 63.158 2.30 0.00 43.89 2.92
392 393 2.599597 GCCAGGGCTCACCATCAT 59.400 61.111 2.30 0.00 43.89 2.45
393 394 3.731728 GGCCAGGGCTCACCATCA 61.732 66.667 10.60 0.00 43.89 3.07
394 395 4.512914 GGGCCAGGGCTCACCATC 62.513 72.222 13.81 0.00 42.14 3.51
397 398 4.748144 CAAGGGCCAGGGCTCACC 62.748 72.222 13.60 4.41 45.68 4.02
398 399 4.748144 CCAAGGGCCAGGGCTCAC 62.748 72.222 13.60 2.65 45.68 3.51
403 404 3.358824 AATCCCCAAGGGCCAGGG 61.359 66.667 23.32 23.32 43.94 4.45
404 405 2.042639 CAATCCCCAAGGGCCAGG 60.043 66.667 6.18 7.26 43.94 4.45
405 406 1.076485 CTCAATCCCCAAGGGCCAG 60.076 63.158 6.18 0.00 43.94 4.85
406 407 1.543642 TCTCAATCCCCAAGGGCCA 60.544 57.895 6.18 0.00 43.94 5.36
407 408 1.228510 CTCTCAATCCCCAAGGGCC 59.771 63.158 0.00 0.00 43.94 5.80
408 409 0.332972 AACTCTCAATCCCCAAGGGC 59.667 55.000 0.00 0.00 43.94 5.19
409 410 1.635487 TCAACTCTCAATCCCCAAGGG 59.365 52.381 0.00 0.00 46.11 3.95
410 411 2.573462 TCTCAACTCTCAATCCCCAAGG 59.427 50.000 0.00 0.00 0.00 3.61
411 412 3.988976 TCTCAACTCTCAATCCCCAAG 57.011 47.619 0.00 0.00 0.00 3.61
412 413 4.934797 ATTCTCAACTCTCAATCCCCAA 57.065 40.909 0.00 0.00 0.00 4.12
413 414 4.141620 GCTATTCTCAACTCTCAATCCCCA 60.142 45.833 0.00 0.00 0.00 4.96
414 415 4.384940 GCTATTCTCAACTCTCAATCCCC 58.615 47.826 0.00 0.00 0.00 4.81
415 416 4.054671 CGCTATTCTCAACTCTCAATCCC 58.945 47.826 0.00 0.00 0.00 3.85
416 417 4.054671 CCGCTATTCTCAACTCTCAATCC 58.945 47.826 0.00 0.00 0.00 3.01
417 418 4.505922 CACCGCTATTCTCAACTCTCAATC 59.494 45.833 0.00 0.00 0.00 2.67
418 419 4.437239 CACCGCTATTCTCAACTCTCAAT 58.563 43.478 0.00 0.00 0.00 2.57
419 420 3.849911 CACCGCTATTCTCAACTCTCAA 58.150 45.455 0.00 0.00 0.00 3.02
420 421 2.417379 GCACCGCTATTCTCAACTCTCA 60.417 50.000 0.00 0.00 0.00 3.27
421 422 2.159170 AGCACCGCTATTCTCAACTCTC 60.159 50.000 0.00 0.00 36.99 3.20
422 423 1.827969 AGCACCGCTATTCTCAACTCT 59.172 47.619 0.00 0.00 36.99 3.24
423 424 2.159170 AGAGCACCGCTATTCTCAACTC 60.159 50.000 0.00 0.00 39.88 3.01
424 425 1.827969 AGAGCACCGCTATTCTCAACT 59.172 47.619 0.00 0.00 39.88 3.16
425 426 1.929836 CAGAGCACCGCTATTCTCAAC 59.070 52.381 0.00 0.00 39.88 3.18
426 427 1.740380 GCAGAGCACCGCTATTCTCAA 60.740 52.381 0.00 0.00 39.88 3.02
427 428 0.179100 GCAGAGCACCGCTATTCTCA 60.179 55.000 0.00 0.00 39.88 3.27
428 429 0.878086 GGCAGAGCACCGCTATTCTC 60.878 60.000 0.00 0.00 39.88 2.87
429 430 1.144936 GGCAGAGCACCGCTATTCT 59.855 57.895 0.00 0.00 39.88 2.40
430 431 2.240500 CGGCAGAGCACCGCTATTC 61.241 63.158 0.00 0.00 44.90 1.75
431 432 2.202932 CGGCAGAGCACCGCTATT 60.203 61.111 0.00 0.00 44.90 1.73
437 438 0.104855 TCATCATACGGCAGAGCACC 59.895 55.000 0.00 0.00 0.00 5.01
438 439 1.797046 CATCATCATACGGCAGAGCAC 59.203 52.381 0.00 0.00 0.00 4.40
439 440 1.688197 TCATCATCATACGGCAGAGCA 59.312 47.619 0.00 0.00 0.00 4.26
440 441 2.445565 TCATCATCATACGGCAGAGC 57.554 50.000 0.00 0.00 0.00 4.09
441 442 4.184079 TCATCATCATCATACGGCAGAG 57.816 45.455 0.00 0.00 0.00 3.35
442 443 4.281688 TCTTCATCATCATCATACGGCAGA 59.718 41.667 0.00 0.00 0.00 4.26
443 444 4.563061 TCTTCATCATCATCATACGGCAG 58.437 43.478 0.00 0.00 0.00 4.85
444 445 4.605640 TCTTCATCATCATCATACGGCA 57.394 40.909 0.00 0.00 0.00 5.69
445 446 5.063186 GTCATCTTCATCATCATCATACGGC 59.937 44.000 0.00 0.00 0.00 5.68
446 447 6.396450 AGTCATCTTCATCATCATCATACGG 58.604 40.000 0.00 0.00 0.00 4.02
447 448 8.457261 TCTAGTCATCTTCATCATCATCATACG 58.543 37.037 0.00 0.00 0.00 3.06
453 454 9.848710 ACATTTTCTAGTCATCTTCATCATCAT 57.151 29.630 0.00 0.00 0.00 2.45
454 455 9.676861 AACATTTTCTAGTCATCTTCATCATCA 57.323 29.630 0.00 0.00 0.00 3.07
455 456 9.932699 CAACATTTTCTAGTCATCTTCATCATC 57.067 33.333 0.00 0.00 0.00 2.92
456 457 9.458727 ACAACATTTTCTAGTCATCTTCATCAT 57.541 29.630 0.00 0.00 0.00 2.45
457 458 8.853077 ACAACATTTTCTAGTCATCTTCATCA 57.147 30.769 0.00 0.00 0.00 3.07
458 459 9.552114 CAACAACATTTTCTAGTCATCTTCATC 57.448 33.333 0.00 0.00 0.00 2.92
459 460 9.071276 ACAACAACATTTTCTAGTCATCTTCAT 57.929 29.630 0.00 0.00 0.00 2.57
460 461 8.450578 ACAACAACATTTTCTAGTCATCTTCA 57.549 30.769 0.00 0.00 0.00 3.02
461 462 8.778358 AGACAACAACATTTTCTAGTCATCTTC 58.222 33.333 0.00 0.00 0.00 2.87
462 463 8.562892 CAGACAACAACATTTTCTAGTCATCTT 58.437 33.333 0.00 0.00 0.00 2.40
463 464 7.173907 CCAGACAACAACATTTTCTAGTCATCT 59.826 37.037 0.00 0.00 0.00 2.90
464 465 7.301054 CCAGACAACAACATTTTCTAGTCATC 58.699 38.462 0.00 0.00 0.00 2.92
465 466 6.207417 CCCAGACAACAACATTTTCTAGTCAT 59.793 38.462 0.00 0.00 0.00 3.06
466 467 5.530915 CCCAGACAACAACATTTTCTAGTCA 59.469 40.000 0.00 0.00 0.00 3.41
467 468 5.763204 TCCCAGACAACAACATTTTCTAGTC 59.237 40.000 0.00 0.00 0.00 2.59
468 469 5.690865 TCCCAGACAACAACATTTTCTAGT 58.309 37.500 0.00 0.00 0.00 2.57
469 470 6.824305 ATCCCAGACAACAACATTTTCTAG 57.176 37.500 0.00 0.00 0.00 2.43
470 471 7.069331 ACAAATCCCAGACAACAACATTTTCTA 59.931 33.333 0.00 0.00 0.00 2.10
471 472 6.127083 ACAAATCCCAGACAACAACATTTTCT 60.127 34.615 0.00 0.00 0.00 2.52
472 473 6.048509 ACAAATCCCAGACAACAACATTTTC 58.951 36.000 0.00 0.00 0.00 2.29
473 474 5.988287 ACAAATCCCAGACAACAACATTTT 58.012 33.333 0.00 0.00 0.00 1.82
474 475 5.612725 ACAAATCCCAGACAACAACATTT 57.387 34.783 0.00 0.00 0.00 2.32
475 476 5.358922 CAACAAATCCCAGACAACAACATT 58.641 37.500 0.00 0.00 0.00 2.71
476 477 4.202243 CCAACAAATCCCAGACAACAACAT 60.202 41.667 0.00 0.00 0.00 2.71
477 478 3.131933 CCAACAAATCCCAGACAACAACA 59.868 43.478 0.00 0.00 0.00 3.33
478 479 3.492482 CCCAACAAATCCCAGACAACAAC 60.492 47.826 0.00 0.00 0.00 3.32
479 480 2.697751 CCCAACAAATCCCAGACAACAA 59.302 45.455 0.00 0.00 0.00 2.83
480 481 2.315176 CCCAACAAATCCCAGACAACA 58.685 47.619 0.00 0.00 0.00 3.33
481 482 2.035832 CACCCAACAAATCCCAGACAAC 59.964 50.000 0.00 0.00 0.00 3.32
482 483 2.315176 CACCCAACAAATCCCAGACAA 58.685 47.619 0.00 0.00 0.00 3.18
483 484 1.480312 CCACCCAACAAATCCCAGACA 60.480 52.381 0.00 0.00 0.00 3.41
484 485 1.203001 TCCACCCAACAAATCCCAGAC 60.203 52.381 0.00 0.00 0.00 3.51
485 486 1.153539 TCCACCCAACAAATCCCAGA 58.846 50.000 0.00 0.00 0.00 3.86
486 487 1.826720 CATCCACCCAACAAATCCCAG 59.173 52.381 0.00 0.00 0.00 4.45
487 488 1.148867 ACATCCACCCAACAAATCCCA 59.851 47.619 0.00 0.00 0.00 4.37
488 489 1.937191 ACATCCACCCAACAAATCCC 58.063 50.000 0.00 0.00 0.00 3.85
489 490 2.028203 CCAACATCCACCCAACAAATCC 60.028 50.000 0.00 0.00 0.00 3.01
490 491 2.612721 GCCAACATCCACCCAACAAATC 60.613 50.000 0.00 0.00 0.00 2.17
491 492 1.347378 GCCAACATCCACCCAACAAAT 59.653 47.619 0.00 0.00 0.00 2.32
492 493 0.755686 GCCAACATCCACCCAACAAA 59.244 50.000 0.00 0.00 0.00 2.83
493 494 0.105760 AGCCAACATCCACCCAACAA 60.106 50.000 0.00 0.00 0.00 2.83
494 495 0.105760 AAGCCAACATCCACCCAACA 60.106 50.000 0.00 0.00 0.00 3.33
495 496 0.318120 CAAGCCAACATCCACCCAAC 59.682 55.000 0.00 0.00 0.00 3.77
496 497 1.470996 GCAAGCCAACATCCACCCAA 61.471 55.000 0.00 0.00 0.00 4.12
497 498 1.907807 GCAAGCCAACATCCACCCA 60.908 57.895 0.00 0.00 0.00 4.51
498 499 1.607467 AGCAAGCCAACATCCACCC 60.607 57.895 0.00 0.00 0.00 4.61
499 500 0.895100 TCAGCAAGCCAACATCCACC 60.895 55.000 0.00 0.00 0.00 4.61
500 501 0.242017 GTCAGCAAGCCAACATCCAC 59.758 55.000 0.00 0.00 0.00 4.02
501 502 0.895100 GGTCAGCAAGCCAACATCCA 60.895 55.000 0.00 0.00 0.00 3.41
502 503 0.895100 TGGTCAGCAAGCCAACATCC 60.895 55.000 0.00 0.00 0.00 3.51
503 504 0.242017 GTGGTCAGCAAGCCAACATC 59.758 55.000 0.00 0.00 36.41 3.06
504 505 1.181098 GGTGGTCAGCAAGCCAACAT 61.181 55.000 4.00 0.00 41.86 2.71
505 506 1.827789 GGTGGTCAGCAAGCCAACA 60.828 57.895 4.00 0.00 41.86 3.33
506 507 2.564721 GGGTGGTCAGCAAGCCAAC 61.565 63.158 2.55 0.54 41.54 3.77
507 508 2.203480 GGGTGGTCAGCAAGCCAA 60.203 61.111 2.55 0.00 36.24 4.52
508 509 4.284550 GGGGTGGTCAGCAAGCCA 62.285 66.667 2.55 0.00 37.94 4.75
510 511 4.643387 ACGGGGTGGTCAGCAAGC 62.643 66.667 2.55 0.00 0.00 4.01
511 512 2.113139 AACGGGGTGGTCAGCAAG 59.887 61.111 2.55 0.00 0.00 4.01
512 513 2.203280 CAACGGGGTGGTCAGCAA 60.203 61.111 2.55 0.00 0.00 3.91
513 514 4.263572 CCAACGGGGTGGTCAGCA 62.264 66.667 0.00 0.00 33.63 4.41
543 544 1.227943 TATCATGGGAGCCTTGCGC 60.228 57.895 0.00 0.00 37.98 6.09
544 545 0.394192 TCTATCATGGGAGCCTTGCG 59.606 55.000 0.00 0.00 0.00 4.85
545 546 2.039480 TCATCTATCATGGGAGCCTTGC 59.961 50.000 0.00 0.00 0.00 4.01
546 547 4.262617 CATCATCTATCATGGGAGCCTTG 58.737 47.826 0.00 0.00 0.00 3.61
547 548 3.915073 ACATCATCTATCATGGGAGCCTT 59.085 43.478 0.00 0.00 0.00 4.35
548 549 3.263681 CACATCATCTATCATGGGAGCCT 59.736 47.826 0.00 0.00 0.00 4.58
549 550 3.607741 CACATCATCTATCATGGGAGCC 58.392 50.000 0.00 0.00 0.00 4.70
550 551 3.008330 GCACATCATCTATCATGGGAGC 58.992 50.000 0.00 0.00 0.00 4.70
551 552 4.254492 CAGCACATCATCTATCATGGGAG 58.746 47.826 0.00 0.00 0.00 4.30
552 553 3.008704 CCAGCACATCATCTATCATGGGA 59.991 47.826 0.00 0.00 0.00 4.37
553 554 3.244805 ACCAGCACATCATCTATCATGGG 60.245 47.826 0.00 0.00 0.00 4.00
554 555 4.017177 ACCAGCACATCATCTATCATGG 57.983 45.455 0.00 0.00 0.00 3.66
555 556 5.061179 TGAACCAGCACATCATCTATCATG 58.939 41.667 0.00 0.00 0.00 3.07
556 557 5.300411 TGAACCAGCACATCATCTATCAT 57.700 39.130 0.00 0.00 0.00 2.45
557 558 4.758773 TGAACCAGCACATCATCTATCA 57.241 40.909 0.00 0.00 0.00 2.15
558 559 5.503031 CGTTTGAACCAGCACATCATCTATC 60.503 44.000 0.00 0.00 0.00 2.08
559 560 4.333649 CGTTTGAACCAGCACATCATCTAT 59.666 41.667 0.00 0.00 0.00 1.98
560 561 3.684305 CGTTTGAACCAGCACATCATCTA 59.316 43.478 0.00 0.00 0.00 1.98
561 562 2.485426 CGTTTGAACCAGCACATCATCT 59.515 45.455 0.00 0.00 0.00 2.90
562 563 2.226437 ACGTTTGAACCAGCACATCATC 59.774 45.455 0.00 0.00 0.00 2.92
563 564 2.030893 CACGTTTGAACCAGCACATCAT 60.031 45.455 0.00 0.00 0.00 2.45
564 565 1.333308 CACGTTTGAACCAGCACATCA 59.667 47.619 0.00 0.00 0.00 3.07
565 566 1.925946 GCACGTTTGAACCAGCACATC 60.926 52.381 0.00 0.00 0.00 3.06
566 567 0.030638 GCACGTTTGAACCAGCACAT 59.969 50.000 0.00 0.00 0.00 3.21
567 568 1.029408 AGCACGTTTGAACCAGCACA 61.029 50.000 0.00 0.00 0.00 4.57
568 569 0.592247 CAGCACGTTTGAACCAGCAC 60.592 55.000 0.00 0.00 0.00 4.40
569 570 1.726865 CAGCACGTTTGAACCAGCA 59.273 52.632 0.00 0.00 0.00 4.41
570 571 1.658409 GCAGCACGTTTGAACCAGC 60.658 57.895 1.14 0.00 0.00 4.85
571 572 1.369209 CGCAGCACGTTTGAACCAG 60.369 57.895 1.14 0.00 36.87 4.00
572 573 2.712539 CGCAGCACGTTTGAACCA 59.287 55.556 1.14 0.00 36.87 3.67
763 764 1.966762 CAGGCCAAAATCCAGCGTT 59.033 52.632 5.01 0.00 0.00 4.84
928 951 3.755628 CGTCGAAGGGGAAGGCGA 61.756 66.667 0.00 0.00 34.63 5.54
1678 1792 6.037391 CAGCATCCTTGTCAAACACAAATTTT 59.963 34.615 0.00 0.00 44.71 1.82
1813 2069 1.601903 ACAACACCATACAACAGTGCG 59.398 47.619 0.00 0.00 34.83 5.34
2220 2596 4.465660 TGTGCCAAATATGCCAAGTTGTAT 59.534 37.500 1.45 0.00 0.00 2.29
2681 3068 2.973694 GCAGAAACATGCCCATCAAT 57.026 45.000 0.00 0.00 40.43 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.