AutoCloner

Multiple sequence alignment - TraesCS7A01G520000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G520000	chr7A	100.000	2942	0	0	1	2942	704386759	704389700	0.000000e+00	5433.0
1	TraesCS7A01G520000	chr7A	97.826	644	14	0	1	644	67569269	67569912	0.000000e+00	1112.0
2	TraesCS7A01G520000	chr7A	78.830	359	57	12	2591	2942	24532511	24532857	1.060000e-54	224.0
3	TraesCS7A01G520000	chr7B	88.889	1584	77	33	643	2192	702854775	702853257	0.000000e+00	1858.0
4	TraesCS7A01G520000	chr7B	92.084	1238	48	26	992	2192	702535209	702536433	0.000000e+00	1698.0
5	TraesCS7A01G520000	chr7B	98.300	647	11	0	1	647	28890212	28889566	0.000000e+00	1134.0
6	TraesCS7A01G520000	chr7B	93.075	361	10	5	1623	1983	702824103	702823758	5.620000e-142	514.0
7	TraesCS7A01G520000	chr7B	86.239	436	57	3	2508	2942	702820702	702820269	1.230000e-128	470.0
8	TraesCS7A01G520000	chr7B	94.257	296	17	0	2188	2483	702555075	702555370	1.240000e-123	453.0
9	TraesCS7A01G520000	chr7B	84.354	441	64	5	2503	2942	702555356	702555792	7.540000e-116	427.0
10	TraesCS7A01G520000	chr7B	92.177	294	22	1	2191	2483	702820986	702820693	5.870000e-112	414.0
11	TraesCS7A01G520000	chr7B	92.177	294	20	3	2191	2483	702850795	702850504	2.110000e-111	412.0
12	TraesCS7A01G520000	chr7B	88.645	273	16	4	766	1036	702824353	702824094	4.730000e-83	318.0
13	TraesCS7A01G520000	chr7B	88.152	211	9	4	1986	2192	702823721	702823523	1.360000e-58	237.0
14	TraesCS7A01G520000	chr7B	89.091	110	9	2	643	749	702535111	702535220	1.840000e-27	134.0
15	TraesCS7A01G520000	chr7B	93.878	49	2	1	728	775	702825213	702825165	4.070000e-09	73.1
16	TraesCS7A01G520000	chr7D	89.957	1394	52	27	643	1983	612977049	612978407	0.000000e+00	1718.0
17	TraesCS7A01G520000	chr7D	92.417	211	8	3	1982	2188	612978445	612978651	7.970000e-76	294.0
18	TraesCS7A01G520000	chr7D	78.169	142	23	8	2809	2942	1951502	1951643	1.880000e-12	84.2
19	TraesCS7A01G520000	chr1B	98.445	643	10	0	1	643	614567191	614567833	0.000000e+00	1133.0
20	TraesCS7A01G520000	chr1B	97.984	645	11	2	1	643	634675516	634674872	0.000000e+00	1118.0
21	TraesCS7A01G520000	chr4B	86.385	1065	104	27	688	1737	641236	640198	0.000000e+00	1125.0
22	TraesCS7A01G520000	chr4B	91.234	308	21	2	1633	1934	640245	639938	5.870000e-112	414.0
23	TraesCS7A01G520000	chr4B	91.515	165	6	2	1986	2147	639797	639638	1.370000e-53	220.0
24	TraesCS7A01G520000	chr4B	97.368	38	1	0	2153	2190	639496	639459	6.810000e-07	65.8
25	TraesCS7A01G520000	chr5B	97.846	650	14	0	1	650	428572235	428571586	0.000000e+00	1123.0
26	TraesCS7A01G520000	chr5B	96.340	683	18	4	1	678	62200410	62199730	0.000000e+00	1116.0
27	TraesCS7A01G520000	chr5B	75.633	316	55	15	2593	2890	634316971	634317282	1.420000e-28	137.0
28	TraesCS7A01G520000	chr3B	97.843	649	11	2	1	647	623088581	623087934	0.000000e+00	1118.0
29	TraesCS7A01G520000	chr3B	83.684	190	22	7	2591	2779	801163434	801163253	1.400000e-38	171.0
30	TraesCS7A01G520000	chr3B	84.874	119	16	2	2662	2779	803017317	803017200	5.150000e-23	119.0
31	TraesCS7A01G520000	chr2B	97.542	651	16	0	1	651	251122013	251121363	0.000000e+00	1114.0
32	TraesCS7A01G520000	chr2B	74.185	368	67	16	2602	2942	433934436	433934070	8.560000e-26	128.0
33	TraesCS7A01G520000	chr6A	97.826	644	14	0	1	644	119756385	119757028	0.000000e+00	1112.0
34	TraesCS7A01G520000	chr6A	82.469	405	66	5	1001	1401	85261741	85262144	1.680000e-92	350.0
35	TraesCS7A01G520000	chr4D	86.484	1058	90	25	688	1718	1239175	1240206	0.000000e+00	1112.0
36	TraesCS7A01G520000	chr4D	89.711	311	23	3	1633	1934	1240178	1240488	3.560000e-104	388.0
37	TraesCS7A01G520000	chr4D	81.068	206	10	16	1982	2179	1240578	1240762	1.420000e-28	137.0
38	TraesCS7A01G520000	chr4A	84.543	854	66	28	883	1716	603535103	603534296	0.000000e+00	785.0
39	TraesCS7A01G520000	chr4A	87.138	311	22	11	1633	1934	603534322	603534021	1.310000e-88	337.0
40	TraesCS7A01G520000	chr6D	83.744	406	59	6	1001	1401	67569268	67569671	7.700000e-101	377.0
41	TraesCS7A01G520000	chr6B	83.744	406	59	6	1001	1401	142612543	142612946	7.700000e-101	377.0
42	TraesCS7A01G520000	chr2A	81.742	356	55	8	2592	2942	16504067	16504417	3.710000e-74	289.0
43	TraesCS7A01G520000	chr2D	81.180	356	60	5	2590	2942	14136096	14136447	2.230000e-71	279.0
44	TraesCS7A01G520000	chr2D	76.953	256	49	7	2696	2942	505600687	505600941	1.420000e-28	137.0
45	TraesCS7A01G520000	chr2D	73.596	356	71	12	2589	2925	10226191	10226542	6.660000e-22	115.0
46	TraesCS7A01G520000	chrUn	86.667	105	13	1	2591	2694	45281983	45282087	6.660000e-22	115.0
47	TraesCS7A01G520000	chr1D	77.174	184	29	10	2591	2769	487357642	487357467	8.680000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G520000	chr7A	704386759	704389700	2941	False	5433.000000	5433	100.000000	1	2942	1	chr7A.!!$F3	2941
1	TraesCS7A01G520000	chr7A	67569269	67569912	643	False	1112.000000	1112	97.826000	1	644	1	chr7A.!!$F2	643
2	TraesCS7A01G520000	chr7B	702850504	702854775	4271	True	1135.000000	1858	90.533000	643	2483	2	chr7B.!!$R3	1840
3	TraesCS7A01G520000	chr7B	28889566	28890212	646	True	1134.000000	1134	98.300000	1	647	1	chr7B.!!$R1	646
4	TraesCS7A01G520000	chr7B	702535111	702536433	1322	False	916.000000	1698	90.587500	643	2192	2	chr7B.!!$F1	1549
5	TraesCS7A01G520000	chr7B	702555075	702555792	717	False	440.000000	453	89.305500	2188	2942	2	chr7B.!!$F2	754
6	TraesCS7A01G520000	chr7B	702820269	702825213	4944	True	337.683333	514	90.361000	728	2942	6	chr7B.!!$R2	2214
7	TraesCS7A01G520000	chr7D	612977049	612978651	1602	False	1006.000000	1718	91.187000	643	2188	2	chr7D.!!$F2	1545
8	TraesCS7A01G520000	chr1B	614567191	614567833	642	False	1133.000000	1133	98.445000	1	643	1	chr1B.!!$F1	642
9	TraesCS7A01G520000	chr1B	634674872	634675516	644	True	1118.000000	1118	97.984000	1	643	1	chr1B.!!$R1	642
10	TraesCS7A01G520000	chr4B	639459	641236	1777	True	456.200000	1125	91.625500	688	2190	4	chr4B.!!$R1	1502
11	TraesCS7A01G520000	chr5B	428571586	428572235	649	True	1123.000000	1123	97.846000	1	650	1	chr5B.!!$R2	649
12	TraesCS7A01G520000	chr5B	62199730	62200410	680	True	1116.000000	1116	96.340000	1	678	1	chr5B.!!$R1	677
13	TraesCS7A01G520000	chr3B	623087934	623088581	647	True	1118.000000	1118	97.843000	1	647	1	chr3B.!!$R1	646
14	TraesCS7A01G520000	chr2B	251121363	251122013	650	True	1114.000000	1114	97.542000	1	651	1	chr2B.!!$R1	650
15	TraesCS7A01G520000	chr6A	119756385	119757028	643	False	1112.000000	1112	97.826000	1	644	1	chr6A.!!$F2	643
16	TraesCS7A01G520000	chr4D	1239175	1240762	1587	False	545.666667	1112	85.754333	688	2179	3	chr4D.!!$F1	1491
17	TraesCS7A01G520000	chr4A	603534021	603535103	1082	True	561.000000	785	85.840500	883	1934	2	chr4A.!!$R1	1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
540	545	0.104934	AGGGAGGGAGAGTGTGTGTT	60.105	55.0	0.0	0.0	0.0	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2359	6186	0.445829	GCGAAGAAGGCAAGAAGCTC	59.554	55.0	0.0	0.0	44.79	4.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
144	145	6.202762	TGGCGCATAGAAATAAGAGTATTGTG	59.797	38.462	10.83	0.00	30.04	3.33
458	459	7.554959	AATAGATGAATTATGGTCCCGTACT	57.445	36.000	0.00	0.00	0.00	2.73
540	545	0.104934	AGGGAGGGAGAGTGTGTGTT	60.105	55.000	0.00	0.00	0.00	3.32
664	671	9.232473	CTAGTAGATATAGGATGCGCCAATATA	57.768	37.037	4.18	3.08	40.02	0.86
675	682	6.260714	GGATGCGCCAATATATCATGACAATA	59.739	38.462	4.18	0.00	36.34	1.90
676	683	7.040892	GGATGCGCCAATATATCATGACAATAT	60.041	37.037	4.18	1.98	36.34	1.28
677	684	8.907222	ATGCGCCAATATATCATGACAATATA	57.093	30.769	4.18	0.00	0.00	0.86
678	685	8.907222	TGCGCCAATATATCATGACAATATAT	57.093	30.769	4.18	0.00	34.99	0.86
679	686	9.995003	TGCGCCAATATATCATGACAATATATA	57.005	29.630	4.18	0.00	33.26	0.86
783	1618	6.381498	TCATATCCTACCAAACCAAAGACA	57.619	37.500	0.00	0.00	0.00	3.41
805	1640	0.469144	GGGGCCACTTTCCAGTCAAA	60.469	55.000	4.39	0.00	0.00	2.69
806	1641	0.673985	GGGCCACTTTCCAGTCAAAC	59.326	55.000	4.39	0.00	0.00	2.93
807	1642	1.398692	GGCCACTTTCCAGTCAAACA	58.601	50.000	0.00	0.00	0.00	2.83
808	1643	1.754226	GGCCACTTTCCAGTCAAACAA	59.246	47.619	0.00	0.00	0.00	2.83
937	1790	4.343323	CATCCACCACCGCACCCA	62.343	66.667	0.00	0.00	0.00	4.51
949	1802	1.441311	GCACCCAACCACAACCAAG	59.559	57.895	0.00	0.00	0.00	3.61
1102	1975	4.514577	CCTACGCCGTGCTCTGGG	62.515	72.222	0.00	0.00	0.00	4.45
1708	2689	1.304962	TCCTCTGCTCCGGCTTACA	60.305	57.895	0.00	0.00	39.59	2.41
2056	3188	7.854534	TGTGCGTATCATGAAGATGAAATTAG	58.145	34.615	0.00	0.00	42.02	1.73
2201	6027	5.301805	CCACCACAAGTCTATTGGAAAAAGT	59.698	40.000	6.65	0.00	34.24	2.66
2202	6028	6.183360	CCACCACAAGTCTATTGGAAAAAGTT	60.183	38.462	6.65	0.00	34.24	2.66
2289	6116	4.829064	TGGCACAAGTTATTCAGTTCAC	57.171	40.909	0.00	0.00	31.92	3.18
2311	6138	3.296628	GTGTTATTTGCCAGTGACAACG	58.703	45.455	0.00	0.00	0.00	4.10
2359	6186	4.046938	AGCATGTTACGATACTGACAGG	57.953	45.455	7.51	0.00	0.00	4.00
2364	6191	3.762288	TGTTACGATACTGACAGGAGCTT	59.238	43.478	7.51	0.00	0.00	3.74
2411	6238	2.607499	TGCCAACCAAGATTGTCCATT	58.393	42.857	0.00	0.00	0.00	3.16
2438	6265	7.046652	ACATGATTCTCATCCTCTAGTTTGTG	58.953	38.462	0.00	0.00	34.28	3.33
2483	6310	6.288941	TGACGACCAACTCCTTATGATTTA	57.711	37.500	0.00	0.00	0.00	1.40
2484	6311	6.103997	TGACGACCAACTCCTTATGATTTAC	58.896	40.000	0.00	0.00	0.00	2.01
2485	6312	5.425630	ACGACCAACTCCTTATGATTTACC	58.574	41.667	0.00	0.00	0.00	2.85
2486	6313	4.814771	CGACCAACTCCTTATGATTTACCC	59.185	45.833	0.00	0.00	0.00	3.69
2487	6314	5.125367	ACCAACTCCTTATGATTTACCCC	57.875	43.478	0.00	0.00	0.00	4.95
2488	6315	4.134563	CCAACTCCTTATGATTTACCCCG	58.865	47.826	0.00	0.00	0.00	5.73
2489	6316	3.487120	ACTCCTTATGATTTACCCCGC	57.513	47.619	0.00	0.00	0.00	6.13
2490	6317	2.775384	ACTCCTTATGATTTACCCCGCA	59.225	45.455	0.00	0.00	0.00	5.69
2491	6318	3.201266	ACTCCTTATGATTTACCCCGCAA	59.799	43.478	0.00	0.00	0.00	4.85
2492	6319	4.204012	CTCCTTATGATTTACCCCGCAAA	58.796	43.478	0.00	0.00	0.00	3.68
2493	6320	4.601084	TCCTTATGATTTACCCCGCAAAA	58.399	39.130	0.00	0.00	0.00	2.44
2494	6321	5.017490	TCCTTATGATTTACCCCGCAAAAA	58.983	37.500	0.00	0.00	0.00	1.94
2537	6364	6.616774	TTTGATTTGGTTTCAGGAATTTGC	57.383	33.333	0.00	0.00	0.00	3.68
2554	6381	2.203538	CCTGGTTTGGTGCAGGCT	60.204	61.111	0.00	0.00	0.00	4.58
2562	6389	0.459489	TTGGTGCAGGCTTTCAACAC	59.541	50.000	3.95	0.00	28.35	3.32
2582	6409	3.983344	CACAGCCATTGTTTTAGCAGTTC	59.017	43.478	0.00	0.00	38.16	3.01
2587	6414	4.499696	GCCATTGTTTTAGCAGTTCACTGT	60.500	41.667	8.72	0.00	45.45	3.55
2590	6417	6.017109	CCATTGTTTTAGCAGTTCACTGTAGT	60.017	38.462	8.72	0.00	45.45	2.73
2621	6449	7.872138	TGATAAAGGGTGGATCTTATTCACTT	58.128	34.615	0.00	0.00	0.00	3.16
2683	6511	1.591703	CGGCCTCTGCACACTTAGA	59.408	57.895	0.00	0.00	40.13	2.10
2694	6522	2.549754	GCACACTTAGAATGCACACAGT	59.450	45.455	7.39	0.00	39.23	3.55
2701	6529	1.599071	AGAATGCACACAGTCAACACG	59.401	47.619	0.00	0.00	43.32	4.49
2729	6557	2.193536	ACACAGAAAACAGGCCGGC	61.194	57.895	21.18	21.18	0.00	6.13
2735	6563	2.362329	GAAAACAGGCCGGCAAAGCA	62.362	55.000	30.85	0.00	0.00	3.91
2751	6579	5.464168	GCAAAGCACAAAGTCATACAAGAT	58.536	37.500	0.00	0.00	0.00	2.40
2752	6580	5.570589	GCAAAGCACAAAGTCATACAAGATC	59.429	40.000	0.00	0.00	0.00	2.75
2760	6588	8.671921	CACAAAGTCATACAAGATCAAAGCTAT	58.328	33.333	0.00	0.00	0.00	2.97
2761	6589	8.671921	ACAAAGTCATACAAGATCAAAGCTATG	58.328	33.333	0.00	0.00	0.00	2.23
2763	6591	5.762218	AGTCATACAAGATCAAAGCTATGCC	59.238	40.000	0.00	0.00	0.00	4.40
2764	6592	5.762218	GTCATACAAGATCAAAGCTATGCCT	59.238	40.000	0.00	0.00	0.00	4.75
2766	6594	7.442364	GTCATACAAGATCAAAGCTATGCCTAA	59.558	37.037	0.00	0.00	0.00	2.69
2767	6595	7.658982	TCATACAAGATCAAAGCTATGCCTAAG	59.341	37.037	0.00	0.00	0.00	2.18
2768	6596	4.578105	ACAAGATCAAAGCTATGCCTAAGC	59.422	41.667	0.00	0.00	40.40	3.09
2799	6627	2.086869	ACCATGAAGCGATCACCAAAG	58.913	47.619	0.00	0.00	41.93	2.77
2803	6631	3.678056	TGAAGCGATCACCAAAGTACT	57.322	42.857	0.00	0.00	31.50	2.73
2808	6636	4.243270	AGCGATCACCAAAGTACTACAAC	58.757	43.478	0.00	0.00	0.00	3.32
2809	6637	3.991773	GCGATCACCAAAGTACTACAACA	59.008	43.478	0.00	0.00	0.00	3.33
2823	6651	1.459450	ACAACAACCATATCCGCACC	58.541	50.000	0.00	0.00	0.00	5.01
2830	6658	1.064017	ACCATATCCGCACCAACCATT	60.064	47.619	0.00	0.00	0.00	3.16
2843	6671	3.194062	CCAACCATTTTTGACACCACAC	58.806	45.455	0.00	0.00	0.00	3.82
2844	6672	3.118811	CCAACCATTTTTGACACCACACT	60.119	43.478	0.00	0.00	0.00	3.55
2847	6675	3.960102	ACCATTTTTGACACCACACTGAT	59.040	39.130	0.00	0.00	0.00	2.90
2849	6677	5.774690	ACCATTTTTGACACCACACTGATAT	59.225	36.000	0.00	0.00	0.00	1.63
2856	6684	4.041567	TGACACCACACTGATATTGAGGTT	59.958	41.667	0.00	0.00	35.95	3.50
2871	6699	3.472652	TGAGGTTCTGCAACAATAACGT	58.527	40.909	0.00	0.00	33.70	3.99
2880	6708	7.694388	TCTGCAACAATAACGTCTATATGAC	57.306	36.000	0.00	0.00	42.06	3.06
2909	6737	2.031919	TCAAGCGCCACCGTCATT	59.968	55.556	2.29	0.00	36.67	2.57
2917	6745	0.679640	GCCACCGTCATTGGATCCAA	60.680	55.000	28.92	28.92	40.47	3.53

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
144	145	7.041098	CCATACTCAATTGAATACCTAACCTGC	60.041	40.741	9.88	0.00	0.00	4.85
458	459	7.337938	ACACACACACATATCCATCTTATTGA	58.662	34.615	0.00	0.00	0.00	2.57
540	545	3.569277	CCATCAAATCCTCACACACACAA	59.431	43.478	0.00	0.00	0.00	3.33
574	581	9.661563	TTAAGAGTTCAATATTACGACATTGGT	57.338	29.630	0.00	0.00	33.77	3.67
783	1618	3.966543	CTGGAAAGTGGCCCCGGT	61.967	66.667	0.00	0.00	0.00	5.28
805	1640	2.616330	CGCAGCCCGTCATGTTTGT	61.616	57.895	0.00	0.00	0.00	2.83
806	1641	2.176546	CGCAGCCCGTCATGTTTG	59.823	61.111	0.00	0.00	0.00	2.93
937	1790	1.774110	TGATGTGCTTGGTTGTGGTT	58.226	45.000	0.00	0.00	0.00	3.67
949	1802	3.643978	GAGGCGGCGATGATGTGC	61.644	66.667	12.98	0.00	0.00	4.57
1325	2198	2.359975	GGTTCCTGGACGCCTTGG	60.360	66.667	0.00	0.00	0.00	3.61
2056	3188	8.652810	AGCTAAATTTATGCAATCAACAATCC	57.347	30.769	16.68	0.00	0.00	3.01
2108	3247	2.042686	ACCCGATTGTCATCCACATG	57.957	50.000	0.00	0.00	33.90	3.21
2109	3248	2.026356	TCAACCCGATTGTCATCCACAT	60.026	45.455	0.00	0.00	39.54	3.21
2110	3249	1.349357	TCAACCCGATTGTCATCCACA	59.651	47.619	0.00	0.00	39.54	4.17
2111	3250	2.107950	TCAACCCGATTGTCATCCAC	57.892	50.000	0.00	0.00	39.54	4.02
2160	3435	2.507769	GAAGCCGCCATTGCAAGC	60.508	61.111	4.94	2.55	37.32	4.01
2210	6036	8.010733	ACGGCATAACTAACTGTAGGTAATTA	57.989	34.615	0.00	0.00	33.16	1.40
2232	6058	3.941483	ACAGGCTAATGAATTTCAGACGG	59.059	43.478	5.21	0.00	0.00	4.79
2282	6109	3.003275	ACTGGCAAATAACACGTGAACTG	59.997	43.478	25.01	12.32	0.00	3.16
2289	6116	3.296628	GTTGTCACTGGCAAATAACACG	58.703	45.455	0.00	0.00	0.00	4.49
2311	6138	7.478520	AGTAGTCGCCATATTTGTAAACATC	57.521	36.000	0.00	0.00	0.00	3.06
2359	6186	0.445829	GCGAAGAAGGCAAGAAGCTC	59.554	55.000	0.00	0.00	44.79	4.09
2364	6191	1.003355	CCCTGCGAAGAAGGCAAGA	60.003	57.895	0.00	0.00	40.39	3.02
2438	6265	1.202568	CGACGCGCATCATGAATCC	59.797	57.895	5.73	0.00	0.00	3.01
2499	6326	8.907222	ACCAAATCAAATCATAAGCAGTTTTT	57.093	26.923	0.00	0.00	0.00	1.94
2500	6327	8.907222	AACCAAATCAAATCATAAGCAGTTTT	57.093	26.923	0.00	0.00	0.00	2.43
2501	6328	8.907222	AAACCAAATCAAATCATAAGCAGTTT	57.093	26.923	0.00	0.00	0.00	2.66
2502	6329	8.149647	TGAAACCAAATCAAATCATAAGCAGTT	58.850	29.630	0.00	0.00	0.00	3.16
2503	6330	7.669427	TGAAACCAAATCAAATCATAAGCAGT	58.331	30.769	0.00	0.00	0.00	4.40
2504	6331	7.277098	CCTGAAACCAAATCAAATCATAAGCAG	59.723	37.037	0.00	0.00	0.00	4.24
2505	6332	7.039152	TCCTGAAACCAAATCAAATCATAAGCA	60.039	33.333	0.00	0.00	0.00	3.91
2506	6333	7.322664	TCCTGAAACCAAATCAAATCATAAGC	58.677	34.615	0.00	0.00	0.00	3.09
2507	6334	9.880157	ATTCCTGAAACCAAATCAAATCATAAG	57.120	29.630	0.00	0.00	0.00	1.73
2510	6337	9.005777	CAAATTCCTGAAACCAAATCAAATCAT	57.994	29.630	0.00	0.00	0.00	2.45
2511	6338	7.041235	GCAAATTCCTGAAACCAAATCAAATCA	60.041	33.333	0.00	0.00	0.00	2.57
2512	6339	7.300320	GCAAATTCCTGAAACCAAATCAAATC	58.700	34.615	0.00	0.00	0.00	2.17
2513	6340	6.207221	GGCAAATTCCTGAAACCAAATCAAAT	59.793	34.615	0.00	0.00	0.00	2.32
2514	6341	5.530543	GGCAAATTCCTGAAACCAAATCAAA	59.469	36.000	0.00	0.00	0.00	2.69
2515	6342	5.062528	GGCAAATTCCTGAAACCAAATCAA	58.937	37.500	0.00	0.00	0.00	2.57
2516	6343	4.347583	AGGCAAATTCCTGAAACCAAATCA	59.652	37.500	0.00	0.00	34.56	2.57
2554	6381	4.808364	GCTAAAACAATGGCTGTGTTGAAA	59.192	37.500	7.06	0.00	39.14	2.69
2562	6389	3.983344	GTGAACTGCTAAAACAATGGCTG	59.017	43.478	0.00	0.00	0.00	4.85
2596	6423	7.451731	AGTGAATAAGATCCACCCTTTATCA	57.548	36.000	0.00	0.00	0.00	2.15
2603	6430	8.519799	TCATTTTAAGTGAATAAGATCCACCC	57.480	34.615	0.00	0.00	0.00	4.61
2617	6445	4.148696	CCGCTTGTTGCTTCATTTTAAGTG	59.851	41.667	0.00	0.00	40.11	3.16
2621	6449	4.782019	ATCCGCTTGTTGCTTCATTTTA	57.218	36.364	0.00	0.00	40.11	1.52
2633	6461	2.113860	ATGTGCTTGTATCCGCTTGT	57.886	45.000	0.00	0.00	0.00	3.16
2644	6472	2.226437	GGGTGTGTACTCAATGTGCTTG	59.774	50.000	0.00	0.00	36.09	4.01
2683	6511	1.662517	TCGTGTTGACTGTGTGCATT	58.337	45.000	0.00	0.00	0.00	3.56
2694	6522	2.886124	TGTGCGCGTTCGTGTTGA	60.886	55.556	8.43	0.00	38.14	3.18
2701	6529	0.247894	TTTTCTGTGTGTGCGCGTTC	60.248	50.000	8.43	1.34	0.00	3.95
2729	6557	6.671190	TGATCTTGTATGACTTTGTGCTTTG	58.329	36.000	0.00	0.00	0.00	2.77
2735	6563	8.671921	CATAGCTTTGATCTTGTATGACTTTGT	58.328	33.333	0.00	0.00	0.00	2.83
2783	6611	3.678056	AGTACTTTGGTGATCGCTTCA	57.322	42.857	6.18	0.00	0.00	3.02
2794	6622	6.036735	CGGATATGGTTGTTGTAGTACTTTGG	59.963	42.308	0.00	0.00	0.00	3.28
2799	6627	4.269363	GTGCGGATATGGTTGTTGTAGTAC	59.731	45.833	0.00	0.00	0.00	2.73
2803	6631	2.027100	TGGTGCGGATATGGTTGTTGTA	60.027	45.455	0.00	0.00	0.00	2.41
2808	6636	0.738389	GGTTGGTGCGGATATGGTTG	59.262	55.000	0.00	0.00	0.00	3.77
2809	6637	0.329931	TGGTTGGTGCGGATATGGTT	59.670	50.000	0.00	0.00	0.00	3.67
2823	6651	3.864583	CAGTGTGGTGTCAAAAATGGTTG	59.135	43.478	0.00	0.00	0.00	3.77
2830	6658	5.473162	CCTCAATATCAGTGTGGTGTCAAAA	59.527	40.000	0.00	0.00	0.00	2.44
2843	6671	5.885230	TTGTTGCAGAACCTCAATATCAG	57.115	39.130	0.00	0.00	0.00	2.90
2844	6672	7.413988	CGTTATTGTTGCAGAACCTCAATATCA	60.414	37.037	0.00	0.00	33.19	2.15
2847	6675	5.703592	ACGTTATTGTTGCAGAACCTCAATA	59.296	36.000	0.00	0.00	32.27	1.90
2849	6677	3.880490	ACGTTATTGTTGCAGAACCTCAA	59.120	39.130	0.00	0.00	0.00	3.02
2856	6684	7.694388	GTCATATAGACGTTATTGTTGCAGA	57.306	36.000	0.00	0.00	37.53	4.26
2871	6699	1.265095	GCGTCGTTCCCGTCATATAGA	59.735	52.381	0.00	0.00	35.01	1.98
2880	6708	3.479269	GCTTGAGCGTCGTTCCCG	61.479	66.667	6.63	0.00	0.00	5.14
2901	6729	0.695924	TGGTTGGATCCAATGACGGT	59.304	50.000	29.37	0.00	38.28	4.83
2909	6737	1.079796	TGGATTGGTGGTTGGATCCA	58.920	50.000	11.44	11.44	44.21	3.41
2917	6745	4.675063	AACCTAGATTTGGATTGGTGGT	57.325	40.909	0.00	0.00	0.00	4.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.