Multiple sequence alignment - TraesCS7A01G519600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G519600 chr7A 100.000 5677 0 0 1 5677 704270019 704275695 0.000000e+00 10484.0
1 TraesCS7A01G519600 chr7A 98.246 114 0 2 3451 3562 18962202 18962315 1.250000e-46 198.0
2 TraesCS7A01G519600 chr7A 99.074 108 1 0 3455 3562 605175710 605175603 1.610000e-45 195.0
3 TraesCS7A01G519600 chr7A 97.403 77 2 0 5216 5292 661454794 661454870 1.280000e-26 132.0
4 TraesCS7A01G519600 chr7A 100.000 34 0 0 1 34 83529702 83529669 4.750000e-06 63.9
5 TraesCS7A01G519600 chr7D 94.605 2669 102 16 803 3456 612889420 612892061 0.000000e+00 4093.0
6 TraesCS7A01G519600 chr7D 92.424 1650 55 18 3597 5214 612892051 612893662 0.000000e+00 2290.0
7 TraesCS7A01G519600 chr7D 90.855 667 45 12 26 687 612888764 612889419 0.000000e+00 880.0
8 TraesCS7A01G519600 chr7D 97.938 194 4 0 5484 5677 612893836 612894029 2.530000e-88 337.0
9 TraesCS7A01G519600 chr7D 97.403 154 4 0 5358 5511 612893662 612893815 4.360000e-66 263.0
10 TraesCS7A01G519600 chr7D 96.053 76 3 0 5216 5291 598012953 598013028 2.150000e-24 124.0
11 TraesCS7A01G519600 chr7B 96.566 1718 44 4 1752 3455 702321438 702323154 0.000000e+00 2832.0
12 TraesCS7A01G519600 chr7B 92.232 1519 88 13 3597 5102 702323145 702324646 0.000000e+00 2124.0
13 TraesCS7A01G519600 chr7B 93.916 904 47 4 803 1703 702320419 702321317 0.000000e+00 1358.0
14 TraesCS7A01G519600 chr7B 88.551 690 60 12 26 711 702319738 702320412 0.000000e+00 819.0
15 TraesCS7A01G519600 chr7B 86.198 384 29 8 4620 4997 702390636 702391001 1.480000e-105 394.0
16 TraesCS7A01G519600 chr7B 89.109 202 10 4 5478 5677 702324946 702325137 2.040000e-59 241.0
17 TraesCS7A01G519600 chr7B 99.074 108 1 0 3455 3562 672656372 672656265 1.610000e-45 195.0
18 TraesCS7A01G519600 chr7B 91.935 124 9 1 5517 5640 702428293 702428415 7.560000e-39 172.0
19 TraesCS7A01G519600 chr7B 95.876 97 4 0 5415 5511 702324836 702324932 2.120000e-34 158.0
20 TraesCS7A01G519600 chr7B 81.646 158 6 8 5358 5509 702428067 702428207 6.010000e-20 110.0
21 TraesCS7A01G519600 chr7B 100.000 30 0 0 756 785 702320401 702320430 7.950000e-04 56.5
22 TraesCS7A01G519600 chr2A 95.833 144 5 1 3456 3599 235326323 235326181 1.230000e-56 231.0
23 TraesCS7A01G519600 chr6A 94.595 148 2 2 3457 3599 42121423 42121277 2.060000e-54 224.0
24 TraesCS7A01G519600 chr6A 96.694 121 2 2 3479 3599 408052151 408052033 3.470000e-47 200.0
25 TraesCS7A01G519600 chr6A 99.074 108 1 0 3455 3562 168007030 168007137 1.610000e-45 195.0
26 TraesCS7A01G519600 chr6A 96.053 76 3 0 5216 5291 12457583 12457508 2.150000e-24 124.0
27 TraesCS7A01G519600 chr6A 96.053 76 3 0 5216 5291 108925895 108925820 2.150000e-24 124.0
28 TraesCS7A01G519600 chr6A 87.755 98 12 0 5194 5291 607965135 607965038 1.290000e-21 115.0
29 TraesCS7A01G519600 chr1A 96.610 118 2 2 3446 3562 532103033 532103149 1.610000e-45 195.0
30 TraesCS7A01G519600 chr1A 95.798 119 4 1 3444 3562 99154858 99154975 2.090000e-44 191.0
31 TraesCS7A01G519600 chr1A 96.053 76 3 0 5216 5291 392781405 392781480 2.150000e-24 124.0
32 TraesCS7A01G519600 chr1A 88.636 88 7 3 3521 3606 333878829 333878915 2.800000e-18 104.0
33 TraesCS7A01G519600 chr1A 92.857 70 3 2 3538 3606 292087719 292087651 3.620000e-17 100.0
34 TraesCS7A01G519600 chr3A 96.104 77 3 0 5216 5292 89605565 89605489 5.970000e-25 126.0
35 TraesCS7A01G519600 chr3A 92.771 83 6 0 5207 5289 603893490 603893572 2.780000e-23 121.0
36 TraesCS7A01G519600 chr3A 89.773 88 5 4 3521 3606 290424039 290424124 6.010000e-20 110.0
37 TraesCS7A01G519600 chrUn 92.771 83 6 0 5209 5291 12279379 12279461 2.780000e-23 121.0
38 TraesCS7A01G519600 chrUn 87.619 105 12 1 2583 2686 196936472 196936576 2.780000e-23 121.0
39 TraesCS7A01G519600 chrUn 86.667 105 13 1 2583 2686 196962254 196962358 1.290000e-21 115.0
40 TraesCS7A01G519600 chr4A 91.250 80 4 3 3538 3617 36381859 36381783 7.780000e-19 106.0
41 TraesCS7A01G519600 chr4A 100.000 28 0 0 554 581 613430566 613430539 1.000000e-02 52.8
42 TraesCS7A01G519600 chr3B 88.636 88 6 4 3521 3606 50797184 50797269 2.800000e-18 104.0
43 TraesCS7A01G519600 chr6B 90.123 81 5 3 3521 3599 259289969 259290048 1.010000e-17 102.0
44 TraesCS7A01G519600 chr6B 80.734 109 11 7 2057 2155 471050752 471050644 6.100000e-10 76.8
45 TraesCS7A01G519600 chr3D 90.196 51 4 1 1 50 419898712 419898762 1.320000e-06 65.8
46 TraesCS7A01G519600 chr2D 93.023 43 2 1 1 42 527529989 527529947 1.710000e-05 62.1
47 TraesCS7A01G519600 chr5D 97.222 36 0 1 1 35 220414059 220414094 6.140000e-05 60.2
48 TraesCS7A01G519600 chr5D 94.872 39 0 2 1 37 548027490 548027452 6.140000e-05 60.2
49 TraesCS7A01G519600 chr5D 92.683 41 2 1 1 41 482013930 482013891 2.210000e-04 58.4
50 TraesCS7A01G519600 chr5B 94.737 38 2 0 1 38 62940349 62940312 6.140000e-05 60.2
51 TraesCS7A01G519600 chr2B 86.792 53 5 2 1 53 22316958 22316908 2.210000e-04 58.4
52 TraesCS7A01G519600 chr4B 100.000 30 0 0 1 30 327529758 327529787 7.950000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G519600 chr7A 704270019 704275695 5676 False 10484.000000 10484 100.000 1 5677 1 chr7A.!!$F3 5676
1 TraesCS7A01G519600 chr7D 612888764 612894029 5265 False 1572.600000 4093 94.645 26 5677 5 chr7D.!!$F2 5651
2 TraesCS7A01G519600 chr7B 702319738 702325137 5399 False 1084.071429 2832 93.750 26 5677 7 chr7B.!!$F2 5651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 792 0.034896 ACTCGTGAGGGCGAAATGTT 59.965 50.0 1.43 0.00 40.57 2.71 F
1689 1708 0.105964 ACGGCATGCCACACGTATAT 59.894 50.0 34.93 6.58 37.85 0.86 F
3218 3323 0.037326 GTCTCAAGCGATGGTGACCA 60.037 55.0 6.84 6.84 38.19 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2545 2638 0.740737 GATCCAGGTCCGCCAATTTG 59.259 55.0 0.00 0.00 37.19 2.32 R
3517 3622 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.0 3.79 0.00 30.80 3.13 R
5128 5342 0.319405 GCCAGCTCCAGCAAATTTGT 59.681 50.0 19.03 3.98 45.16 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.740380 CGGAGGGAGTACATGCTTGTG 60.740 57.143 15.08 0.00 36.53 3.33
362 369 7.710475 TCAAGAAATCCATGAACTTTTTCCAAC 59.290 33.333 0.00 0.00 0.00 3.77
365 372 2.969262 TCCATGAACTTTTTCCAACCCC 59.031 45.455 0.00 0.00 0.00 4.95
373 380 4.089361 ACTTTTTCCAACCCCTGATCATC 58.911 43.478 0.00 0.00 0.00 2.92
392 399 8.495949 TGATCATCTTTTAAACTCGTGAACTTC 58.504 33.333 0.00 0.00 0.00 3.01
493 500 1.882912 ACTTGATGCAAGCTCGTGAA 58.117 45.000 7.06 0.00 44.43 3.18
575 582 8.449397 CACAAACTTTTTCAAATCCATGAACAA 58.551 29.630 0.00 0.00 38.95 2.83
677 684 4.761739 AGATCCACGAGCTTTTTCAAATGA 59.238 37.500 0.00 0.00 0.00 2.57
683 690 5.686841 CACGAGCTTTTTCAAATGATTGACA 59.313 36.000 0.00 0.00 45.01 3.58
693 700 1.453155 ATGATTGACAGTGCGGAACC 58.547 50.000 0.00 0.00 0.00 3.62
694 701 0.107643 TGATTGACAGTGCGGAACCA 59.892 50.000 0.00 0.00 0.00 3.67
696 703 1.606668 GATTGACAGTGCGGAACCAAA 59.393 47.619 0.00 0.00 0.00 3.28
699 706 1.305201 GACAGTGCGGAACCAAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
700 707 1.264288 GACAGTGCGGAACCAAAGAAG 59.736 52.381 0.00 0.00 0.00 2.85
701 708 0.040067 CAGTGCGGAACCAAAGAAGC 60.040 55.000 0.00 0.00 0.00 3.86
702 709 0.179018 AGTGCGGAACCAAAGAAGCT 60.179 50.000 0.00 0.00 0.00 3.74
703 710 1.071699 AGTGCGGAACCAAAGAAGCTA 59.928 47.619 0.00 0.00 0.00 3.32
704 711 1.197036 GTGCGGAACCAAAGAAGCTAC 59.803 52.381 0.00 0.00 0.00 3.58
705 712 1.071699 TGCGGAACCAAAGAAGCTACT 59.928 47.619 0.00 0.00 0.00 2.57
706 713 2.300723 TGCGGAACCAAAGAAGCTACTA 59.699 45.455 0.00 0.00 0.00 1.82
707 714 3.244284 TGCGGAACCAAAGAAGCTACTAA 60.244 43.478 0.00 0.00 0.00 2.24
708 715 3.939592 GCGGAACCAAAGAAGCTACTAAT 59.060 43.478 0.00 0.00 0.00 1.73
709 716 4.201822 GCGGAACCAAAGAAGCTACTAATG 60.202 45.833 0.00 0.00 0.00 1.90
710 717 5.175859 CGGAACCAAAGAAGCTACTAATGA 58.824 41.667 0.00 0.00 0.00 2.57
711 718 5.292101 CGGAACCAAAGAAGCTACTAATGAG 59.708 44.000 0.00 0.00 0.00 2.90
712 719 6.174049 GGAACCAAAGAAGCTACTAATGAGT 58.826 40.000 0.00 0.00 39.92 3.41
713 720 6.314152 GGAACCAAAGAAGCTACTAATGAGTC 59.686 42.308 0.00 0.00 37.10 3.36
714 721 6.613153 ACCAAAGAAGCTACTAATGAGTCT 57.387 37.500 0.00 0.00 37.10 3.24
715 722 7.010339 ACCAAAGAAGCTACTAATGAGTCTT 57.990 36.000 0.00 0.00 37.10 3.01
716 723 7.454225 ACCAAAGAAGCTACTAATGAGTCTTT 58.546 34.615 0.00 0.00 37.10 2.52
717 724 7.939588 ACCAAAGAAGCTACTAATGAGTCTTTT 59.060 33.333 2.31 0.00 37.10 2.27
718 725 8.787852 CCAAAGAAGCTACTAATGAGTCTTTTT 58.212 33.333 2.31 0.00 37.10 1.94
776 783 2.952978 AGCTACTAATGACTCGTGAGGG 59.047 50.000 1.43 0.00 37.84 4.30
777 784 2.544069 GCTACTAATGACTCGTGAGGGC 60.544 54.545 1.43 0.00 31.71 5.19
778 785 0.456221 ACTAATGACTCGTGAGGGCG 59.544 55.000 1.43 0.00 31.71 6.13
779 786 0.738975 CTAATGACTCGTGAGGGCGA 59.261 55.000 1.43 0.00 39.22 5.54
780 787 1.134367 CTAATGACTCGTGAGGGCGAA 59.866 52.381 1.43 0.00 40.57 4.70
781 788 0.320374 AATGACTCGTGAGGGCGAAA 59.680 50.000 1.43 0.00 40.57 3.46
782 789 0.537188 ATGACTCGTGAGGGCGAAAT 59.463 50.000 1.43 0.00 40.57 2.17
783 790 0.389817 TGACTCGTGAGGGCGAAATG 60.390 55.000 1.43 0.00 40.57 2.32
784 791 0.389948 GACTCGTGAGGGCGAAATGT 60.390 55.000 1.43 0.00 40.57 2.71
785 792 0.034896 ACTCGTGAGGGCGAAATGTT 59.965 50.000 1.43 0.00 40.57 2.71
786 793 1.156736 CTCGTGAGGGCGAAATGTTT 58.843 50.000 0.00 0.00 40.57 2.83
787 794 1.535462 CTCGTGAGGGCGAAATGTTTT 59.465 47.619 0.00 0.00 40.57 2.43
788 795 1.950909 TCGTGAGGGCGAAATGTTTTT 59.049 42.857 0.00 0.00 37.99 1.94
839 846 1.557443 AACGGAAGAAGCGAGCAACG 61.557 55.000 0.00 0.00 45.66 4.10
881 894 3.260483 GCGAGATGGCTGTGAGCG 61.260 66.667 0.00 0.00 43.62 5.03
882 895 3.260483 CGAGATGGCTGTGAGCGC 61.260 66.667 0.00 0.00 43.62 5.92
883 896 2.894387 GAGATGGCTGTGAGCGCC 60.894 66.667 2.29 0.00 43.62 6.53
905 918 3.097614 AGCTTAGCGAACTCCTTTCCTA 58.902 45.455 0.00 0.00 0.00 2.94
906 919 3.119065 AGCTTAGCGAACTCCTTTCCTAC 60.119 47.826 0.00 0.00 0.00 3.18
958 971 1.132332 TCCAAAACCCACCTCCTCCTA 60.132 52.381 0.00 0.00 0.00 2.94
959 972 1.004394 CCAAAACCCACCTCCTCCTAC 59.996 57.143 0.00 0.00 0.00 3.18
973 986 2.494918 CTACCCCCTCGCAGAACG 59.505 66.667 0.00 0.00 45.62 3.95
1169 1182 1.606889 ACTTCGCCTTCTCCTCCGT 60.607 57.895 0.00 0.00 0.00 4.69
1243 1256 1.584380 GACCGTCTACGACCTGCTGT 61.584 60.000 3.65 0.00 43.02 4.40
1244 1257 1.177256 ACCGTCTACGACCTGCTGTT 61.177 55.000 3.65 0.00 43.02 3.16
1326 1342 3.839432 GGCGAGAAGGGGGACGAG 61.839 72.222 0.00 0.00 0.00 4.18
1327 1343 3.839432 GCGAGAAGGGGGACGAGG 61.839 72.222 0.00 0.00 0.00 4.63
1328 1344 3.148279 CGAGAAGGGGGACGAGGG 61.148 72.222 0.00 0.00 0.00 4.30
1354 1373 0.336737 GGAGGAGGAGGAGGACTTCA 59.663 60.000 0.00 0.00 0.00 3.02
1646 1665 2.098607 GTCATGTGAATCCATGGCTGTG 59.901 50.000 6.96 0.00 42.73 3.66
1689 1708 0.105964 ACGGCATGCCACACGTATAT 59.894 50.000 34.93 6.58 37.85 0.86
1703 1722 9.084164 GCCACACGTATATGTAGGAAAATATAG 57.916 37.037 16.19 0.00 0.00 1.31
1705 1724 9.582431 CACACGTATATGTAGGAAAATATAGGG 57.418 37.037 0.00 0.00 34.03 3.53
1706 1725 9.317827 ACACGTATATGTAGGAAAATATAGGGT 57.682 33.333 0.00 0.00 34.03 4.34
1714 1733 9.936329 ATGTAGGAAAATATAGGGTTGATTGTT 57.064 29.630 0.00 0.00 0.00 2.83
1715 1734 9.184523 TGTAGGAAAATATAGGGTTGATTGTTG 57.815 33.333 0.00 0.00 0.00 3.33
1716 1735 7.660030 AGGAAAATATAGGGTTGATTGTTGG 57.340 36.000 0.00 0.00 0.00 3.77
1717 1736 7.418378 AGGAAAATATAGGGTTGATTGTTGGA 58.582 34.615 0.00 0.00 0.00 3.53
1718 1737 7.561356 AGGAAAATATAGGGTTGATTGTTGGAG 59.439 37.037 0.00 0.00 0.00 3.86
1720 1739 8.525290 AAAATATAGGGTTGATTGTTGGAGAG 57.475 34.615 0.00 0.00 0.00 3.20
1721 1740 2.887151 AGGGTTGATTGTTGGAGAGG 57.113 50.000 0.00 0.00 0.00 3.69
1722 1741 2.348472 AGGGTTGATTGTTGGAGAGGA 58.652 47.619 0.00 0.00 0.00 3.71
1723 1742 2.716424 AGGGTTGATTGTTGGAGAGGAA 59.284 45.455 0.00 0.00 0.00 3.36
1725 1744 3.895041 GGGTTGATTGTTGGAGAGGAAAA 59.105 43.478 0.00 0.00 0.00 2.29
1727 1746 4.584743 GGTTGATTGTTGGAGAGGAAAAGT 59.415 41.667 0.00 0.00 0.00 2.66
1728 1747 5.768164 GGTTGATTGTTGGAGAGGAAAAGTA 59.232 40.000 0.00 0.00 0.00 2.24
1729 1748 6.294010 GGTTGATTGTTGGAGAGGAAAAGTAC 60.294 42.308 0.00 0.00 0.00 2.73
1730 1749 5.935945 TGATTGTTGGAGAGGAAAAGTACA 58.064 37.500 0.00 0.00 0.00 2.90
1731 1750 6.542821 TGATTGTTGGAGAGGAAAAGTACAT 58.457 36.000 0.00 0.00 0.00 2.29
1732 1751 6.655003 TGATTGTTGGAGAGGAAAAGTACATC 59.345 38.462 0.00 0.00 0.00 3.06
1733 1752 4.906618 TGTTGGAGAGGAAAAGTACATCC 58.093 43.478 0.00 0.00 35.88 3.51
1816 1907 4.216257 CCTGACTGAGGTATTTGGTTTGTG 59.784 45.833 0.00 0.00 37.02 3.33
1851 1942 6.019801 GTGAGCAAATGTACTATAACTGTCGG 60.020 42.308 0.00 0.00 0.00 4.79
1938 2029 7.014615 AGGAATCCATATATGTTTTGTTCTGCC 59.985 37.037 11.73 2.25 0.00 4.85
1983 2076 4.283212 TGACAACCATCAGTCACAGATACA 59.717 41.667 0.00 0.00 39.65 2.29
1986 2079 4.890158 ACCATCAGTCACAGATACAACA 57.110 40.909 0.00 0.00 0.00 3.33
2103 2196 1.180029 ATGCTGCCATGTTCCTGAAC 58.820 50.000 3.07 3.07 41.50 3.18
2155 2248 2.169352 CCGAACAGAGACCCTTGATGAT 59.831 50.000 0.00 0.00 0.00 2.45
2332 2425 1.001764 CATGGAGTGCAAGGAGGCA 60.002 57.895 0.00 0.00 42.53 4.75
2497 2590 4.899502 TCAATGAAGACAAGGAGAAGGAC 58.100 43.478 0.00 0.00 0.00 3.85
2545 2638 5.219633 GCTATTGAGAAGAAGATCGAGGAC 58.780 45.833 0.00 0.00 0.00 3.85
2548 2641 5.468540 TTGAGAAGAAGATCGAGGACAAA 57.531 39.130 0.00 0.00 0.00 2.83
2817 2913 6.710744 GCCTATACTAACACATTTGGTATGCT 59.289 38.462 3.93 0.00 0.00 3.79
3095 3191 6.126409 TGTCCCCTGTTCCAAACAATATATC 58.874 40.000 0.00 0.00 41.61 1.63
3178 3274 8.119226 CCACTATTAGCTCATTTTCTTTTCTCG 58.881 37.037 0.00 0.00 0.00 4.04
3218 3323 0.037326 GTCTCAAGCGATGGTGACCA 60.037 55.000 6.84 6.84 38.19 4.02
3335 3440 8.537728 ACTGGGAATTCAAATTGCTGAATATA 57.462 30.769 7.93 0.00 43.65 0.86
3448 3553 3.608316 ACGGCCCGTAAGTTTGTTATA 57.392 42.857 7.20 0.00 38.73 0.98
3449 3554 4.141233 ACGGCCCGTAAGTTTGTTATAT 57.859 40.909 7.20 0.00 38.73 0.86
3450 3555 5.275067 ACGGCCCGTAAGTTTGTTATATA 57.725 39.130 7.20 0.00 38.73 0.86
3451 3556 5.857268 ACGGCCCGTAAGTTTGTTATATAT 58.143 37.500 7.20 0.00 38.73 0.86
3452 3557 5.928264 ACGGCCCGTAAGTTTGTTATATATC 59.072 40.000 7.20 0.00 38.73 1.63
3453 3558 6.161381 CGGCCCGTAAGTTTGTTATATATCT 58.839 40.000 0.00 0.00 0.00 1.98
3454 3559 7.039784 ACGGCCCGTAAGTTTGTTATATATCTA 60.040 37.037 7.20 0.00 38.73 1.98
3455 3560 7.487189 CGGCCCGTAAGTTTGTTATATATCTAG 59.513 40.741 0.00 0.00 0.00 2.43
3456 3561 7.277319 GGCCCGTAAGTTTGTTATATATCTAGC 59.723 40.741 0.00 0.00 0.00 3.42
3457 3562 8.033626 GCCCGTAAGTTTGTTATATATCTAGCT 58.966 37.037 0.00 0.00 0.00 3.32
3474 3579 6.657836 TCTAGCTATGTTTTTAAAGCGTCC 57.342 37.500 0.00 0.00 39.94 4.79
3475 3580 6.403878 TCTAGCTATGTTTTTAAAGCGTCCT 58.596 36.000 0.00 0.00 39.94 3.85
3476 3581 5.959618 AGCTATGTTTTTAAAGCGTCCTT 57.040 34.783 0.00 0.00 39.94 3.36
3477 3582 8.036575 TCTAGCTATGTTTTTAAAGCGTCCTTA 58.963 33.333 0.00 0.00 39.94 2.69
3478 3583 7.443259 AGCTATGTTTTTAAAGCGTCCTTAA 57.557 32.000 0.00 0.00 39.94 1.85
3479 3584 7.527457 AGCTATGTTTTTAAAGCGTCCTTAAG 58.473 34.615 0.00 0.00 39.94 1.85
3480 3585 6.745907 GCTATGTTTTTAAAGCGTCCTTAAGG 59.254 38.462 15.98 15.98 0.00 2.69
3481 3586 4.862350 TGTTTTTAAAGCGTCCTTAAGGC 58.138 39.130 17.32 10.87 39.09 4.35
3482 3587 3.817148 TTTTAAAGCGTCCTTAAGGCG 57.183 42.857 24.87 24.87 43.57 5.52
3483 3588 2.747396 TTAAAGCGTCCTTAAGGCGA 57.253 45.000 30.06 14.46 43.57 5.54
3484 3589 2.000429 TAAAGCGTCCTTAAGGCGAC 58.000 50.000 30.06 22.88 43.57 5.19
3510 3615 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
3518 3623 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
3528 3633 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
3529 3634 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
3530 3635 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
3531 3636 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
3532 3637 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
3533 3638 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
3534 3639 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
3535 3640 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
3536 3641 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
3537 3642 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
3555 3660 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
3576 3681 2.445274 GCCCTCCCTAAGGCGGTA 60.445 66.667 0.00 0.00 44.71 4.02
3577 3682 2.068213 GCCCTCCCTAAGGCGGTAA 61.068 63.158 0.00 0.00 44.71 2.85
3578 3683 2.041206 GCCCTCCCTAAGGCGGTAAG 62.041 65.000 0.00 0.00 44.71 2.34
3579 3684 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
3598 3703 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
3652 3766 4.018490 ACTGAATTGTCAATGCTGGCATA 58.982 39.130 13.43 0.00 36.93 3.14
3815 3929 7.049754 ACATTTGCTTCCTCTCAAAACAAATT 58.950 30.769 0.00 0.00 34.88 1.82
3928 4042 9.851686 TGTTCATCTGGATAATGCTTATTTAGT 57.148 29.630 0.00 0.00 0.00 2.24
3933 4047 9.964354 ATCTGGATAATGCTTATTTAGTATGCA 57.036 29.630 0.00 0.00 44.51 3.96
4141 4256 4.502604 GCTCATGCAATTCAGGCCAAATAT 60.503 41.667 5.01 0.00 39.41 1.28
4185 4300 0.313043 CATCTGGGCATCAAATCGGC 59.687 55.000 0.00 0.00 0.00 5.54
4186 4301 0.184451 ATCTGGGCATCAAATCGGCT 59.816 50.000 0.00 0.00 0.00 5.52
4187 4302 0.034186 TCTGGGCATCAAATCGGCTT 60.034 50.000 0.00 0.00 0.00 4.35
4205 4323 3.529533 GCTTCTTCTTGATCAGCTGCTA 58.470 45.455 9.47 0.00 0.00 3.49
4208 4326 5.757320 GCTTCTTCTTGATCAGCTGCTATAA 59.243 40.000 9.47 0.69 0.00 0.98
4212 4330 3.389002 TCTTGATCAGCTGCTATAAGGCA 59.611 43.478 9.47 0.00 40.15 4.75
4227 4345 7.609146 TGCTATAAGGCATCTTTTCTGGATATG 59.391 37.037 0.00 0.00 37.29 1.78
4235 4353 8.045507 GGCATCTTTTCTGGATATGATATCTCA 58.954 37.037 11.85 7.65 35.41 3.27
4342 4460 3.389983 TGTATCTAGCCGGGTTTAGCAAT 59.610 43.478 13.43 0.00 0.00 3.56
4363 4481 3.879998 TGTCAAGTCAAAGGTGTGCTTA 58.120 40.909 0.00 0.00 0.00 3.09
4393 4511 4.535294 ACTAGACACTAGACAGGACCACTA 59.465 45.833 11.94 0.00 0.00 2.74
4435 4556 9.840427 CAAAGTGGTAACCTTATGTCTTTATTG 57.160 33.333 0.00 0.00 0.00 1.90
4503 4624 3.118847 TCAAGGCTCTCTTCATAGCACTG 60.119 47.826 0.00 0.00 40.61 3.66
4561 4682 0.588252 CAGTGCTTTTGTGTCCTCCG 59.412 55.000 0.00 0.00 0.00 4.63
4568 4689 0.882927 TTTGTGTCCTCCGGCTTTCG 60.883 55.000 0.00 0.00 38.88 3.46
4635 4757 2.124570 CGCCCAAGGATGTGGAGG 60.125 66.667 0.00 0.00 41.65 4.30
4743 4865 2.416107 CTGCTGGAGTGGCAAGGGAA 62.416 60.000 0.00 0.00 39.30 3.97
4748 4870 1.376037 GAGTGGCAAGGGAAGACCG 60.376 63.158 0.00 0.00 46.96 4.79
4803 4925 1.667724 CCTCTGTTTGCATCCGTGATC 59.332 52.381 0.00 0.00 0.00 2.92
4917 5039 5.957774 AGGTGGTCATATTTACTTGGCAAAT 59.042 36.000 0.00 0.00 0.00 2.32
4922 5044 9.420118 TGGTCATATTTACTTGGCAAATAGAAT 57.580 29.630 0.00 2.62 32.81 2.40
4947 5071 0.938713 CCACGTTTGGTCGCTGTTTA 59.061 50.000 0.00 0.00 38.23 2.01
4983 5108 8.777413 GTTAGCAGATATTATGCAATTCTGTCA 58.223 33.333 14.21 3.31 46.31 3.58
4987 5112 7.309012 GCAGATATTATGCAATTCTGTCATGGT 60.309 37.037 8.53 0.00 43.31 3.55
5004 5129 4.223125 TGGCCTGCCTGGTTGCTT 62.223 61.111 9.97 0.00 38.35 3.91
5065 5207 3.829026 TCTCTTGTTCTTCTGCTCTGCTA 59.171 43.478 0.00 0.00 0.00 3.49
5128 5342 6.395426 TGTTCAAGTCTACGGAGAAGTAAA 57.605 37.500 0.00 0.00 31.96 2.01
5143 5357 5.532557 AGAAGTAAACAAATTTGCTGGAGC 58.467 37.500 18.12 4.35 39.55 4.70
5146 5360 2.825861 AACAAATTTGCTGGAGCTGG 57.174 45.000 18.12 0.00 42.66 4.85
5151 5365 0.964358 ATTTGCTGGAGCTGGCTGAC 60.964 55.000 0.00 0.00 42.66 3.51
5213 5427 5.850557 TGGTTTGAATGTGTTTCAGACAT 57.149 34.783 10.09 0.00 46.29 3.06
5214 5428 5.590145 TGGTTTGAATGTGTTTCAGACATG 58.410 37.500 10.09 0.00 46.29 3.21
5215 5429 4.445385 GGTTTGAATGTGTTTCAGACATGC 59.555 41.667 10.09 0.00 46.29 4.06
5216 5430 5.284079 GTTTGAATGTGTTTCAGACATGCT 58.716 37.500 0.00 0.00 44.73 3.79
5217 5431 4.754372 TGAATGTGTTTCAGACATGCTC 57.246 40.909 0.00 0.00 39.44 4.26
5218 5432 3.503363 TGAATGTGTTTCAGACATGCTCC 59.497 43.478 0.00 0.00 39.44 4.70
5219 5433 1.896220 TGTGTTTCAGACATGCTCCC 58.104 50.000 0.00 0.00 41.10 4.30
5220 5434 1.421268 TGTGTTTCAGACATGCTCCCT 59.579 47.619 0.00 0.00 41.10 4.20
5221 5435 2.079925 GTGTTTCAGACATGCTCCCTC 58.920 52.381 0.00 0.00 41.10 4.30
5222 5436 1.003580 TGTTTCAGACATGCTCCCTCC 59.996 52.381 0.00 0.00 32.00 4.30
5223 5437 0.250234 TTTCAGACATGCTCCCTCCG 59.750 55.000 0.00 0.00 0.00 4.63
5224 5438 0.904865 TTCAGACATGCTCCCTCCGT 60.905 55.000 0.00 0.00 0.00 4.69
5225 5439 0.904865 TCAGACATGCTCCCTCCGTT 60.905 55.000 0.00 0.00 0.00 4.44
5226 5440 0.460987 CAGACATGCTCCCTCCGTTC 60.461 60.000 0.00 0.00 0.00 3.95
5227 5441 1.153349 GACATGCTCCCTCCGTTCC 60.153 63.158 0.00 0.00 0.00 3.62
5228 5442 2.202932 CATGCTCCCTCCGTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
5229 5443 2.363795 ATGCTCCCTCCGTTCCGA 60.364 61.111 0.00 0.00 0.00 4.55
5230 5444 1.987855 ATGCTCCCTCCGTTCCGAA 60.988 57.895 0.00 0.00 0.00 4.30
5231 5445 1.338136 ATGCTCCCTCCGTTCCGAAT 61.338 55.000 0.00 0.00 0.00 3.34
5232 5446 1.221021 GCTCCCTCCGTTCCGAATT 59.779 57.895 0.00 0.00 0.00 2.17
5233 5447 0.462789 GCTCCCTCCGTTCCGAATTA 59.537 55.000 0.00 0.00 0.00 1.40
5234 5448 1.805495 GCTCCCTCCGTTCCGAATTAC 60.805 57.143 0.00 0.00 0.00 1.89
5235 5449 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
5236 5450 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5237 5451 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5238 5452 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5239 5453 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
5240 5454 3.124636 CCTCCGTTCCGAATTACTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
5241 5455 2.481185 TCCGTTCCGAATTACTTGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
5242 5456 2.224549 CCGTTCCGAATTACTTGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
5243 5457 3.479006 CGTTCCGAATTACTTGTTGCAG 58.521 45.455 0.00 0.00 0.00 4.41
5244 5458 3.666902 CGTTCCGAATTACTTGTTGCAGG 60.667 47.826 0.00 0.00 0.00 4.85
5245 5459 2.432444 TCCGAATTACTTGTTGCAGGG 58.568 47.619 0.00 0.00 0.00 4.45
5246 5460 2.039216 TCCGAATTACTTGTTGCAGGGA 59.961 45.455 0.00 0.00 0.00 4.20
5247 5461 3.016736 CCGAATTACTTGTTGCAGGGAT 58.983 45.455 0.00 0.00 0.00 3.85
5248 5462 3.181497 CCGAATTACTTGTTGCAGGGATG 60.181 47.826 0.00 0.00 0.00 3.51
5249 5463 3.689161 CGAATTACTTGTTGCAGGGATGA 59.311 43.478 0.00 0.00 0.00 2.92
5250 5464 4.155826 CGAATTACTTGTTGCAGGGATGAA 59.844 41.667 0.00 0.00 0.00 2.57
5251 5465 5.163622 CGAATTACTTGTTGCAGGGATGAAT 60.164 40.000 0.00 0.00 0.00 2.57
5252 5466 5.587388 ATTACTTGTTGCAGGGATGAATG 57.413 39.130 0.00 0.00 0.00 2.67
5253 5467 2.880443 ACTTGTTGCAGGGATGAATGT 58.120 42.857 0.00 0.00 0.00 2.71
5254 5468 4.032960 ACTTGTTGCAGGGATGAATGTA 57.967 40.909 0.00 0.00 0.00 2.29
5255 5469 4.603131 ACTTGTTGCAGGGATGAATGTAT 58.397 39.130 0.00 0.00 0.00 2.29
5256 5470 4.641989 ACTTGTTGCAGGGATGAATGTATC 59.358 41.667 0.00 0.00 0.00 2.24
5257 5471 4.508551 TGTTGCAGGGATGAATGTATCT 57.491 40.909 0.00 0.00 0.00 1.98
5258 5472 5.628797 TGTTGCAGGGATGAATGTATCTA 57.371 39.130 0.00 0.00 0.00 1.98
5259 5473 5.614308 TGTTGCAGGGATGAATGTATCTAG 58.386 41.667 0.00 0.00 0.00 2.43
5260 5474 5.366477 TGTTGCAGGGATGAATGTATCTAGA 59.634 40.000 0.00 0.00 0.00 2.43
5261 5475 6.043590 TGTTGCAGGGATGAATGTATCTAGAT 59.956 38.462 10.73 10.73 0.00 1.98
5262 5476 6.046290 TGCAGGGATGAATGTATCTAGATG 57.954 41.667 15.79 0.00 0.00 2.90
5263 5477 5.545335 TGCAGGGATGAATGTATCTAGATGT 59.455 40.000 15.79 0.00 0.00 3.06
5264 5478 6.725834 TGCAGGGATGAATGTATCTAGATGTA 59.274 38.462 15.79 4.44 0.00 2.29
5265 5479 7.401204 TGCAGGGATGAATGTATCTAGATGTAT 59.599 37.037 15.79 6.61 0.00 2.29
5266 5480 8.263640 GCAGGGATGAATGTATCTAGATGTATT 58.736 37.037 15.79 14.21 0.00 1.89
5303 5517 7.771927 ACATCCATTTCTTTTTCAGAGATGT 57.228 32.000 0.00 0.00 40.92 3.06
5304 5518 8.868522 ACATCCATTTCTTTTTCAGAGATGTA 57.131 30.769 0.00 0.00 40.92 2.29
5305 5519 9.471702 ACATCCATTTCTTTTTCAGAGATGTAT 57.528 29.630 0.00 0.00 40.92 2.29
5320 5534 9.601217 TCAGAGATGTATTTTAGTTCTAAAGGC 57.399 33.333 5.39 2.31 0.00 4.35
5321 5535 9.383519 CAGAGATGTATTTTAGTTCTAAAGGCA 57.616 33.333 5.39 6.57 0.00 4.75
5348 5562 8.992835 TCATGAATGTATCTAGATGTGTATGC 57.007 34.615 15.79 3.92 0.00 3.14
5349 5563 8.037166 TCATGAATGTATCTAGATGTGTATGCC 58.963 37.037 15.79 0.00 0.00 4.40
5350 5564 7.544804 TGAATGTATCTAGATGTGTATGCCT 57.455 36.000 15.79 0.00 0.00 4.75
5351 5565 7.606349 TGAATGTATCTAGATGTGTATGCCTC 58.394 38.462 15.79 1.07 0.00 4.70
5352 5566 7.452813 TGAATGTATCTAGATGTGTATGCCTCT 59.547 37.037 15.79 0.00 0.00 3.69
5353 5567 6.581171 TGTATCTAGATGTGTATGCCTCTG 57.419 41.667 15.79 0.00 0.00 3.35
5354 5568 5.478332 TGTATCTAGATGTGTATGCCTCTGG 59.522 44.000 15.79 0.00 0.00 3.86
5355 5569 4.184649 TCTAGATGTGTATGCCTCTGGA 57.815 45.455 0.00 0.00 0.00 3.86
5356 5570 4.148079 TCTAGATGTGTATGCCTCTGGAG 58.852 47.826 0.00 0.00 0.00 3.86
5366 5580 3.051940 TGCCTCTGGAGTAGATGGATT 57.948 47.619 0.00 0.00 34.21 3.01
5414 5628 2.568956 CTGGAGTCCTGGACTGATTTGA 59.431 50.000 32.86 9.45 43.53 2.69
5427 5641 6.039270 TGGACTGATTTGAATAATTTAGGGCG 59.961 38.462 0.00 0.00 0.00 6.13
5535 5797 6.358974 TTCATCACTGTTCATCCACTAGAA 57.641 37.500 0.00 0.00 0.00 2.10
5542 5804 5.183904 ACTGTTCATCCACTAGAATTTTGGC 59.816 40.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1 2 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2 3 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3 4 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
4 5 8.582437 CATGTACTCCCTCCGTAAAGAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
5 6 7.442656 CATGTACTCCCTCCGTAAAGAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
6 7 6.684613 GCATGTACTCCCTCCGTAAAGAAATA 60.685 42.308 0.00 0.00 0.00 1.40
7 8 5.671493 CATGTACTCCCTCCGTAAAGAAAT 58.329 41.667 0.00 0.00 0.00 2.17
8 9 4.622220 GCATGTACTCCCTCCGTAAAGAAA 60.622 45.833 0.00 0.00 0.00 2.52
9 10 3.118884 GCATGTACTCCCTCCGTAAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
10 11 2.429610 GCATGTACTCCCTCCGTAAAGA 59.570 50.000 0.00 0.00 0.00 2.52
11 12 2.431057 AGCATGTACTCCCTCCGTAAAG 59.569 50.000 0.00 0.00 0.00 1.85
12 13 2.463752 AGCATGTACTCCCTCCGTAAA 58.536 47.619 0.00 0.00 0.00 2.01
13 14 2.154567 AGCATGTACTCCCTCCGTAA 57.845 50.000 0.00 0.00 0.00 3.18
14 15 1.754803 CAAGCATGTACTCCCTCCGTA 59.245 52.381 0.00 0.00 0.00 4.02
15 16 0.537188 CAAGCATGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
16 17 0.537188 ACAAGCATGTACTCCCTCCG 59.463 55.000 0.00 0.00 38.24 4.63
17 18 1.279271 ACACAAGCATGTACTCCCTCC 59.721 52.381 0.00 0.00 37.82 4.30
18 19 2.770164 ACACAAGCATGTACTCCCTC 57.230 50.000 0.00 0.00 37.82 4.30
19 20 3.508845 AAACACAAGCATGTACTCCCT 57.491 42.857 0.00 0.00 37.82 4.20
20 21 4.546570 GAAAAACACAAGCATGTACTCCC 58.453 43.478 0.00 0.00 37.82 4.30
21 22 4.278419 AGGAAAAACACAAGCATGTACTCC 59.722 41.667 0.00 0.00 37.82 3.85
22 23 5.215160 CAGGAAAAACACAAGCATGTACTC 58.785 41.667 0.00 0.00 37.82 2.59
23 24 4.644685 ACAGGAAAAACACAAGCATGTACT 59.355 37.500 0.00 0.00 37.82 2.73
24 25 4.932146 ACAGGAAAAACACAAGCATGTAC 58.068 39.130 0.00 0.00 37.82 2.90
59 61 3.488778 TGACTAAAACCGGCCTAAACA 57.511 42.857 0.00 0.00 0.00 2.83
362 369 5.065218 CACGAGTTTAAAAGATGATCAGGGG 59.935 44.000 0.09 0.00 0.00 4.79
365 372 8.023050 AGTTCACGAGTTTAAAAGATGATCAG 57.977 34.615 0.09 0.00 0.00 2.90
373 380 7.464830 TGAGAGAAGTTCACGAGTTTAAAAG 57.535 36.000 5.50 0.00 0.00 2.27
479 486 4.022935 TGAGAAAAATTCACGAGCTTGCAT 60.023 37.500 0.00 0.00 0.00 3.96
677 684 1.608590 CTTTGGTTCCGCACTGTCAAT 59.391 47.619 0.00 0.00 0.00 2.57
683 690 0.179018 AGCTTCTTTGGTTCCGCACT 60.179 50.000 0.00 0.00 0.00 4.40
750 757 1.614413 CGAGTCATTAGTAGCTCCCCC 59.386 57.143 0.00 0.00 0.00 5.40
751 758 2.034812 CACGAGTCATTAGTAGCTCCCC 59.965 54.545 0.00 0.00 0.00 4.81
752 759 2.950309 TCACGAGTCATTAGTAGCTCCC 59.050 50.000 0.00 0.00 0.00 4.30
753 760 3.003897 CCTCACGAGTCATTAGTAGCTCC 59.996 52.174 0.00 0.00 0.00 4.70
754 761 3.003897 CCCTCACGAGTCATTAGTAGCTC 59.996 52.174 0.00 0.00 0.00 4.09
791 798 3.383185 ACATTTCGCCCTTGTCTCAAAAA 59.617 39.130 0.00 0.00 0.00 1.94
792 799 2.955660 ACATTTCGCCCTTGTCTCAAAA 59.044 40.909 0.00 0.00 0.00 2.44
793 800 2.293122 CACATTTCGCCCTTGTCTCAAA 59.707 45.455 0.00 0.00 0.00 2.69
794 801 1.879380 CACATTTCGCCCTTGTCTCAA 59.121 47.619 0.00 0.00 0.00 3.02
795 802 1.522668 CACATTTCGCCCTTGTCTCA 58.477 50.000 0.00 0.00 0.00 3.27
796 803 0.804989 CCACATTTCGCCCTTGTCTC 59.195 55.000 0.00 0.00 0.00 3.36
797 804 0.110486 ACCACATTTCGCCCTTGTCT 59.890 50.000 0.00 0.00 0.00 3.41
798 805 0.240945 CACCACATTTCGCCCTTGTC 59.759 55.000 0.00 0.00 0.00 3.18
799 806 1.178534 CCACCACATTTCGCCCTTGT 61.179 55.000 0.00 0.00 0.00 3.16
800 807 0.893270 TCCACCACATTTCGCCCTTG 60.893 55.000 0.00 0.00 0.00 3.61
801 808 0.178975 TTCCACCACATTTCGCCCTT 60.179 50.000 0.00 0.00 0.00 3.95
802 809 0.178975 TTTCCACCACATTTCGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
803 810 0.038618 GTTTCCACCACATTTCGCCC 60.039 55.000 0.00 0.00 0.00 6.13
804 811 0.386731 CGTTTCCACCACATTTCGCC 60.387 55.000 0.00 0.00 0.00 5.54
881 894 0.391793 AAGGAGTTCGCTAAGCTGGC 60.392 55.000 0.00 0.00 0.00 4.85
882 895 2.003301 GAAAGGAGTTCGCTAAGCTGG 58.997 52.381 0.00 0.00 0.00 4.85
883 896 2.003301 GGAAAGGAGTTCGCTAAGCTG 58.997 52.381 0.00 0.00 37.08 4.24
884 897 1.903183 AGGAAAGGAGTTCGCTAAGCT 59.097 47.619 0.00 0.00 37.08 3.74
885 898 2.388310 AGGAAAGGAGTTCGCTAAGC 57.612 50.000 0.00 0.00 37.08 3.09
886 899 4.158025 TCTGTAGGAAAGGAGTTCGCTAAG 59.842 45.833 0.00 0.00 37.08 2.18
931 944 1.527380 GTGGGTTTTGGAGCGGTCA 60.527 57.895 17.59 0.00 0.00 4.02
933 946 2.203437 GGTGGGTTTTGGAGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
973 986 0.308684 GGGTTTGTTCCGTTCCGTTC 59.691 55.000 0.00 0.00 0.00 3.95
974 987 1.102809 GGGGTTTGTTCCGTTCCGTT 61.103 55.000 0.00 0.00 0.00 4.44
975 988 1.526686 GGGGTTTGTTCCGTTCCGT 60.527 57.895 0.00 0.00 0.00 4.69
976 989 0.891904 ATGGGGTTTGTTCCGTTCCG 60.892 55.000 0.00 0.00 0.00 4.30
977 990 0.885879 GATGGGGTTTGTTCCGTTCC 59.114 55.000 0.00 0.00 0.00 3.62
978 991 0.519961 CGATGGGGTTTGTTCCGTTC 59.480 55.000 0.00 0.00 0.00 3.95
1194 1207 3.710722 AGCGGCTCCTTGTCCCTG 61.711 66.667 0.00 0.00 0.00 4.45
1310 1326 3.839432 CCTCGTCCCCCTTCTCGC 61.839 72.222 0.00 0.00 0.00 5.03
1311 1327 3.148279 CCCTCGTCCCCCTTCTCG 61.148 72.222 0.00 0.00 0.00 4.04
1313 1329 4.416601 CCCCCTCGTCCCCCTTCT 62.417 72.222 0.00 0.00 0.00 2.85
1326 1342 3.036959 TCCTCCTCCTCCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
1327 1343 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
1328 1344 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1689 1708 9.184523 CAACAATCAACCCTATATTTTCCTACA 57.815 33.333 0.00 0.00 0.00 2.74
1703 1722 2.879103 TCCTCTCCAACAATCAACCC 57.121 50.000 0.00 0.00 0.00 4.11
1705 1724 5.774498 ACTTTTCCTCTCCAACAATCAAC 57.226 39.130 0.00 0.00 0.00 3.18
1706 1725 6.361433 TGTACTTTTCCTCTCCAACAATCAA 58.639 36.000 0.00 0.00 0.00 2.57
1707 1726 5.935945 TGTACTTTTCCTCTCCAACAATCA 58.064 37.500 0.00 0.00 0.00 2.57
1708 1727 6.094186 GGATGTACTTTTCCTCTCCAACAATC 59.906 42.308 0.00 0.00 0.00 2.67
1709 1728 5.946377 GGATGTACTTTTCCTCTCCAACAAT 59.054 40.000 0.00 0.00 0.00 2.71
1710 1729 5.073144 AGGATGTACTTTTCCTCTCCAACAA 59.927 40.000 6.73 0.00 37.89 2.83
1711 1730 4.597507 AGGATGTACTTTTCCTCTCCAACA 59.402 41.667 6.73 0.00 37.89 3.33
1712 1731 5.167303 AGGATGTACTTTTCCTCTCCAAC 57.833 43.478 6.73 0.00 37.89 3.77
1722 1741 9.901172 ACCGAATTTATTAGAGGATGTACTTTT 57.099 29.630 0.00 0.00 0.00 2.27
1740 1759 8.429641 ACAGATGTGGTATCTTATACCGAATTT 58.570 33.333 10.67 1.50 40.39 1.82
1741 1760 7.963532 ACAGATGTGGTATCTTATACCGAATT 58.036 34.615 10.67 0.00 40.39 2.17
1745 1764 7.328737 GCTTTACAGATGTGGTATCTTATACCG 59.671 40.741 10.67 0.00 40.39 4.02
1747 1766 8.368668 AGGCTTTACAGATGTGGTATCTTATAC 58.631 37.037 0.00 0.00 0.00 1.47
1749 1768 7.071196 TGAGGCTTTACAGATGTGGTATCTTAT 59.929 37.037 0.00 0.00 0.00 1.73
1751 1770 5.189736 TGAGGCTTTACAGATGTGGTATCTT 59.810 40.000 0.00 0.00 0.00 2.40
1752 1771 4.716784 TGAGGCTTTACAGATGTGGTATCT 59.283 41.667 0.00 0.00 0.00 1.98
1753 1772 4.811557 GTGAGGCTTTACAGATGTGGTATC 59.188 45.833 0.00 0.00 0.00 2.24
1810 1901 3.745975 TGCTCACTGCTACATACACAAAC 59.254 43.478 0.00 0.00 43.37 2.93
1816 1907 5.812642 AGTACATTTGCTCACTGCTACATAC 59.187 40.000 0.00 0.00 43.37 2.39
1851 1942 2.568696 TGTGCTTACAGAGATCGCTC 57.431 50.000 0.00 0.00 41.62 5.03
1922 2013 4.406456 TGGTCAGGCAGAACAAAACATAT 58.594 39.130 0.00 0.00 42.11 1.78
1938 2029 3.495124 CAAAATTGCCCGTGGTCAG 57.505 52.632 0.00 0.00 0.00 3.51
1983 2076 5.012354 AGGAAATGGAAATGCATCACTTGTT 59.988 36.000 0.00 0.00 0.00 2.83
1986 2079 4.773674 TCAGGAAATGGAAATGCATCACTT 59.226 37.500 0.00 0.00 0.00 3.16
2103 2196 3.438087 ACATCAACGCAGAAGGAGATTTG 59.562 43.478 0.00 0.00 0.00 2.32
2104 2197 3.679389 ACATCAACGCAGAAGGAGATTT 58.321 40.909 0.00 0.00 0.00 2.17
2155 2248 3.056607 TCTTCGTCATGATCTTGTGAGCA 60.057 43.478 0.00 0.00 43.13 4.26
2332 2425 2.676265 GGGGTTGCTGGGGTCGTAT 61.676 63.158 0.00 0.00 0.00 3.06
2545 2638 0.740737 GATCCAGGTCCGCCAATTTG 59.259 55.000 0.00 0.00 37.19 2.32
2548 2641 1.072331 GTATGATCCAGGTCCGCCAAT 59.928 52.381 0.00 0.00 37.19 3.16
2695 2788 5.068198 AGGTGCCTGCTATAACAATTCAATG 59.932 40.000 0.00 0.00 0.00 2.82
2817 2913 5.395103 CCTTCACATCAAAACCCTGTCAAAA 60.395 40.000 0.00 0.00 0.00 2.44
3218 3323 3.673902 TGTACACACATATGCACAGCTT 58.326 40.909 1.58 0.00 0.00 3.74
3448 3553 8.989980 GGACGCTTTAAAAACATAGCTAGATAT 58.010 33.333 0.00 0.00 0.00 1.63
3449 3554 8.202137 AGGACGCTTTAAAAACATAGCTAGATA 58.798 33.333 0.00 0.00 0.00 1.98
3450 3555 7.048512 AGGACGCTTTAAAAACATAGCTAGAT 58.951 34.615 0.00 0.00 0.00 1.98
3451 3556 6.403878 AGGACGCTTTAAAAACATAGCTAGA 58.596 36.000 0.00 0.00 0.00 2.43
3452 3557 6.663944 AGGACGCTTTAAAAACATAGCTAG 57.336 37.500 0.00 0.00 0.00 3.42
3453 3558 8.550710 TTAAGGACGCTTTAAAAACATAGCTA 57.449 30.769 0.00 0.00 0.00 3.32
3454 3559 5.959618 AAGGACGCTTTAAAAACATAGCT 57.040 34.783 0.00 0.00 0.00 3.32
3455 3560 6.745907 CCTTAAGGACGCTTTAAAAACATAGC 59.254 38.462 17.21 0.00 37.39 2.97
3456 3561 6.745907 GCCTTAAGGACGCTTTAAAAACATAG 59.254 38.462 26.21 0.00 37.39 2.23
3457 3562 6.614160 GCCTTAAGGACGCTTTAAAAACATA 58.386 36.000 26.21 0.00 37.39 2.29
3458 3563 5.466819 GCCTTAAGGACGCTTTAAAAACAT 58.533 37.500 26.21 0.00 37.39 2.71
3459 3564 4.555116 CGCCTTAAGGACGCTTTAAAAACA 60.555 41.667 26.21 0.00 37.39 2.83
3460 3565 3.910170 CGCCTTAAGGACGCTTTAAAAAC 59.090 43.478 26.21 1.34 37.39 2.43
3461 3566 3.814283 TCGCCTTAAGGACGCTTTAAAAA 59.186 39.130 26.21 6.81 37.39 1.94
3462 3567 3.187022 GTCGCCTTAAGGACGCTTTAAAA 59.813 43.478 26.21 7.47 37.39 1.52
3463 3568 2.738314 GTCGCCTTAAGGACGCTTTAAA 59.262 45.455 26.21 8.12 37.39 1.52
3464 3569 2.340337 GTCGCCTTAAGGACGCTTTAA 58.660 47.619 26.21 8.78 37.39 1.52
3465 3570 2.000429 GTCGCCTTAAGGACGCTTTA 58.000 50.000 26.21 9.12 37.39 1.85
3466 3571 2.836944 GTCGCCTTAAGGACGCTTT 58.163 52.632 26.21 0.00 37.39 3.51
3467 3572 4.592426 GTCGCCTTAAGGACGCTT 57.408 55.556 26.21 0.00 37.39 4.68
3493 3598 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
3501 3606 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
3502 3607 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
3509 3614 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
3510 3615 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
3511 3616 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
3512 3617 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
3513 3618 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
3514 3619 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
3515 3620 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
3516 3621 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
3517 3622 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
3518 3623 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
3519 3624 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
3520 3625 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
3538 3643 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
3562 3667 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
3563 3668 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
3564 3669 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
3565 3670 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
3566 3671 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
3567 3672 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
3579 3684 4.531659 ATCTATGTTTTTAAGGCGACGC 57.468 40.909 12.43 12.43 0.00 5.19
3580 3685 7.639162 AGATATCTATGTTTTTAAGGCGACG 57.361 36.000 2.53 0.00 0.00 5.12
3581 3686 9.694137 ACTAGATATCTATGTTTTTAAGGCGAC 57.306 33.333 12.86 0.00 0.00 5.19
3582 3687 9.692749 CACTAGATATCTATGTTTTTAAGGCGA 57.307 33.333 12.86 0.00 0.00 5.54
3583 3688 9.692749 TCACTAGATATCTATGTTTTTAAGGCG 57.307 33.333 12.86 0.00 0.00 5.52
3652 3766 7.720957 TGCATATACCAGAAAAGTATTGCTCAT 59.279 33.333 13.76 0.00 36.40 2.90
3826 3940 4.969359 ACATACTATCCTATGGGCCATACC 59.031 45.833 22.26 0.00 37.93 2.73
3973 4087 4.467769 CATATCCAACTGAAGCCCAAGAT 58.532 43.478 0.00 0.00 0.00 2.40
3975 4089 2.954318 CCATATCCAACTGAAGCCCAAG 59.046 50.000 0.00 0.00 0.00 3.61
4126 4241 7.243604 TGTTTTCTCATATTTGGCCTGAATT 57.756 32.000 3.32 0.00 0.00 2.17
4185 4300 6.424509 CCTTATAGCAGCTGATCAAGAAGAAG 59.575 42.308 20.43 8.49 0.00 2.85
4186 4301 6.286758 CCTTATAGCAGCTGATCAAGAAGAA 58.713 40.000 20.43 0.00 0.00 2.52
4187 4302 5.741383 GCCTTATAGCAGCTGATCAAGAAGA 60.741 44.000 20.43 0.00 0.00 2.87
4208 4326 8.160434 AGATATCATATCCAGAAAAGATGCCT 57.840 34.615 5.32 0.00 0.00 4.75
4227 4345 7.708322 TCTTAAGATGCAACACAGTGAGATATC 59.292 37.037 7.81 6.10 0.00 1.63
4235 4353 6.070538 AGGTAGATCTTAAGATGCAACACAGT 60.071 38.462 22.61 0.00 34.37 3.55
4297 4415 1.006102 AGTTTCGACAGTCCTGCCG 60.006 57.895 0.00 0.00 37.80 5.69
4342 4460 2.418368 AGCACACCTTTGACTTGACA 57.582 45.000 0.00 0.00 0.00 3.58
4363 4481 4.884744 CCTGTCTAGTGTCTAGTACAGCAT 59.115 45.833 18.98 0.00 39.29 3.79
4393 4511 3.567164 CACTTTGCAAATCCAGAGTGACT 59.433 43.478 17.83 0.00 45.61 3.41
4503 4624 1.154205 ATAGAGCACGCACGGCATTC 61.154 55.000 6.35 0.00 0.00 2.67
4542 4663 0.588252 CGGAGGACACAAAAGCACTG 59.412 55.000 0.00 0.00 0.00 3.66
4561 4682 1.593469 GATCGCTTAGGAACGAAAGCC 59.407 52.381 0.00 0.00 45.09 4.35
4635 4757 2.528041 ACAGTCCGTCCAAACTTCTC 57.472 50.000 0.00 0.00 0.00 2.87
4743 4865 2.352032 CGGCTCCTCCTTTCGGTCT 61.352 63.158 0.00 0.00 0.00 3.85
4748 4870 2.269241 CCACCGGCTCCTCCTTTC 59.731 66.667 0.00 0.00 0.00 2.62
4777 4899 2.679059 CGGATGCAAACAGAGGTCTCAT 60.679 50.000 0.00 0.00 0.00 2.90
4803 4925 3.611530 CGCAGGACAAACAAATAGTTGGG 60.612 47.826 7.93 0.00 41.19 4.12
4917 5039 2.432444 CCAAACGTGGCCTTCATTCTA 58.568 47.619 3.32 0.00 38.35 2.10
4947 5071 9.533253 GCATAATATCTGCTAACAAAACCAAAT 57.467 29.630 3.58 0.00 36.68 2.32
4983 5108 3.593680 AACCAGGCAGGCCACCAT 61.594 61.111 16.52 0.00 43.14 3.55
4987 5112 4.223125 AAGCAACCAGGCAGGCCA 62.223 61.111 13.63 0.00 43.14 5.36
5004 5129 5.418692 TCCATCTAAGATCTAACCTCCCA 57.581 43.478 0.00 0.00 0.00 4.37
5117 5331 4.917415 CCAGCAAATTTGTTTACTTCTCCG 59.083 41.667 19.03 0.00 0.00 4.63
5128 5342 0.319405 GCCAGCTCCAGCAAATTTGT 59.681 50.000 19.03 3.98 45.16 2.83
5143 5357 3.005791 TGTGATATACATCCGTCAGCCAG 59.994 47.826 0.00 0.00 33.42 4.85
5146 5360 3.736252 GTGTGTGATATACATCCGTCAGC 59.264 47.826 0.00 0.00 42.24 4.26
5151 5365 5.188327 AGTCAGTGTGTGATATACATCCG 57.812 43.478 0.00 0.00 42.24 4.18
5223 5437 3.365969 CCCTGCAACAAGTAATTCGGAAC 60.366 47.826 0.00 0.00 0.00 3.62
5224 5438 2.817258 CCCTGCAACAAGTAATTCGGAA 59.183 45.455 0.00 0.00 0.00 4.30
5225 5439 2.039216 TCCCTGCAACAAGTAATTCGGA 59.961 45.455 0.00 0.00 0.00 4.55
5226 5440 2.432444 TCCCTGCAACAAGTAATTCGG 58.568 47.619 0.00 0.00 0.00 4.30
5227 5441 3.689161 TCATCCCTGCAACAAGTAATTCG 59.311 43.478 0.00 0.00 0.00 3.34
5228 5442 5.643379 TTCATCCCTGCAACAAGTAATTC 57.357 39.130 0.00 0.00 0.00 2.17
5229 5443 5.481473 ACATTCATCCCTGCAACAAGTAATT 59.519 36.000 0.00 0.00 0.00 1.40
5230 5444 5.018809 ACATTCATCCCTGCAACAAGTAAT 58.981 37.500 0.00 0.00 0.00 1.89
5231 5445 4.406456 ACATTCATCCCTGCAACAAGTAA 58.594 39.130 0.00 0.00 0.00 2.24
5232 5446 4.032960 ACATTCATCCCTGCAACAAGTA 57.967 40.909 0.00 0.00 0.00 2.24
5233 5447 2.880443 ACATTCATCCCTGCAACAAGT 58.120 42.857 0.00 0.00 0.00 3.16
5234 5448 4.885907 AGATACATTCATCCCTGCAACAAG 59.114 41.667 0.00 0.00 0.00 3.16
5235 5449 4.858850 AGATACATTCATCCCTGCAACAA 58.141 39.130 0.00 0.00 0.00 2.83
5236 5450 4.508551 AGATACATTCATCCCTGCAACA 57.491 40.909 0.00 0.00 0.00 3.33
5237 5451 5.858381 TCTAGATACATTCATCCCTGCAAC 58.142 41.667 0.00 0.00 0.00 4.17
5238 5452 6.043590 ACATCTAGATACATTCATCCCTGCAA 59.956 38.462 4.54 0.00 0.00 4.08
5239 5453 5.545335 ACATCTAGATACATTCATCCCTGCA 59.455 40.000 4.54 0.00 0.00 4.41
5240 5454 6.047511 ACATCTAGATACATTCATCCCTGC 57.952 41.667 4.54 0.00 0.00 4.85
5277 5491 9.471702 ACATCTCTGAAAAAGAAATGGATGTAT 57.528 29.630 0.00 0.00 41.63 2.29
5278 5492 8.868522 ACATCTCTGAAAAAGAAATGGATGTA 57.131 30.769 0.00 0.00 41.63 2.29
5279 5493 7.771927 ACATCTCTGAAAAAGAAATGGATGT 57.228 32.000 0.00 0.00 37.64 3.06
5294 5508 9.601217 GCCTTTAGAACTAAAATACATCTCTGA 57.399 33.333 8.11 0.00 34.95 3.27
5295 5509 9.383519 TGCCTTTAGAACTAAAATACATCTCTG 57.616 33.333 8.11 0.00 34.95 3.35
5305 5519 9.859427 CATTCATGAATGCCTTTAGAACTAAAA 57.141 29.630 30.11 0.00 41.27 1.52
5322 5536 9.428097 GCATACACATCTAGATACATTCATGAA 57.572 33.333 11.26 11.26 0.00 2.57
5323 5537 8.037166 GGCATACACATCTAGATACATTCATGA 58.963 37.037 4.54 0.00 0.00 3.07
5324 5538 8.039538 AGGCATACACATCTAGATACATTCATG 58.960 37.037 4.54 6.00 0.00 3.07
5325 5539 8.143673 AGGCATACACATCTAGATACATTCAT 57.856 34.615 4.54 0.00 0.00 2.57
5326 5540 7.452813 AGAGGCATACACATCTAGATACATTCA 59.547 37.037 4.54 0.00 0.00 2.57
5327 5541 7.758980 CAGAGGCATACACATCTAGATACATTC 59.241 40.741 4.54 0.00 0.00 2.67
5328 5542 7.310299 CCAGAGGCATACACATCTAGATACATT 60.310 40.741 4.54 0.00 0.00 2.71
5329 5543 6.154192 CCAGAGGCATACACATCTAGATACAT 59.846 42.308 4.54 0.00 0.00 2.29
5330 5544 5.478332 CCAGAGGCATACACATCTAGATACA 59.522 44.000 4.54 0.00 0.00 2.29
5331 5545 5.712446 TCCAGAGGCATACACATCTAGATAC 59.288 44.000 4.54 0.00 0.00 2.24
5332 5546 5.892348 TCCAGAGGCATACACATCTAGATA 58.108 41.667 4.54 0.00 0.00 1.98
5333 5547 4.745351 TCCAGAGGCATACACATCTAGAT 58.255 43.478 0.00 0.00 0.00 1.98
5334 5548 4.148079 CTCCAGAGGCATACACATCTAGA 58.852 47.826 0.00 0.00 0.00 2.43
5335 5549 3.894427 ACTCCAGAGGCATACACATCTAG 59.106 47.826 0.00 0.00 0.00 2.43
5336 5550 3.916035 ACTCCAGAGGCATACACATCTA 58.084 45.455 0.00 0.00 0.00 1.98
5337 5551 2.756907 ACTCCAGAGGCATACACATCT 58.243 47.619 0.00 0.00 0.00 2.90
5338 5552 3.891977 TCTACTCCAGAGGCATACACATC 59.108 47.826 0.00 0.00 0.00 3.06
5339 5553 3.916035 TCTACTCCAGAGGCATACACAT 58.084 45.455 0.00 0.00 0.00 3.21
5340 5554 3.382083 TCTACTCCAGAGGCATACACA 57.618 47.619 0.00 0.00 0.00 3.72
5341 5555 3.006323 CCATCTACTCCAGAGGCATACAC 59.994 52.174 0.00 0.00 36.48 2.90
5342 5556 3.117131 TCCATCTACTCCAGAGGCATACA 60.117 47.826 0.00 0.00 36.48 2.29
5343 5557 3.501349 TCCATCTACTCCAGAGGCATAC 58.499 50.000 0.00 0.00 36.48 2.39
5344 5558 3.903530 TCCATCTACTCCAGAGGCATA 57.096 47.619 0.00 0.00 36.48 3.14
5345 5559 2.783379 TCCATCTACTCCAGAGGCAT 57.217 50.000 0.00 0.00 36.48 4.40
5346 5560 2.783379 ATCCATCTACTCCAGAGGCA 57.217 50.000 0.00 0.00 36.48 4.75
5347 5561 4.141620 TGAAAATCCATCTACTCCAGAGGC 60.142 45.833 0.00 0.00 36.48 4.70
5348 5562 5.130145 AGTGAAAATCCATCTACTCCAGAGG 59.870 44.000 0.00 0.00 36.48 3.69
5349 5563 6.232581 AGTGAAAATCCATCTACTCCAGAG 57.767 41.667 0.00 0.00 36.48 3.35
5350 5564 6.897966 ACTAGTGAAAATCCATCTACTCCAGA 59.102 38.462 0.00 0.00 37.79 3.86
5351 5565 7.118496 ACTAGTGAAAATCCATCTACTCCAG 57.882 40.000 0.00 0.00 0.00 3.86
5352 5566 6.667848 TGACTAGTGAAAATCCATCTACTCCA 59.332 38.462 0.00 0.00 0.00 3.86
5353 5567 7.113658 TGACTAGTGAAAATCCATCTACTCC 57.886 40.000 0.00 0.00 0.00 3.85
5354 5568 9.606631 AAATGACTAGTGAAAATCCATCTACTC 57.393 33.333 0.00 0.00 0.00 2.59
5535 5797 6.127253 CCTCTTTTGATATCCAGTGCCAAAAT 60.127 38.462 0.00 0.00 36.52 1.82
5542 5804 4.518211 GGATGCCTCTTTTGATATCCAGTG 59.482 45.833 0.00 0.00 35.36 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.