Multiple sequence alignment - TraesCS7A01G518600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G518600 chr7A 100.000 4521 0 0 1 4521 702406461 702410981 0.000000e+00 8349.0
1 TraesCS7A01G518600 chr7A 82.169 3006 346 113 1344 4248 702237702 702240618 0.000000e+00 2407.0
2 TraesCS7A01G518600 chr7A 82.619 1703 241 38 983 2664 688345399 688347067 0.000000e+00 1454.0
3 TraesCS7A01G518600 chr7A 80.451 1775 276 41 919 2666 702610715 702612445 0.000000e+00 1290.0
4 TraesCS7A01G518600 chr7D 94.135 2711 139 12 11 2713 612324829 612327527 0.000000e+00 4108.0
5 TraesCS7A01G518600 chr7D 87.881 3218 279 54 1348 4520 611871164 611868013 0.000000e+00 3679.0
6 TraesCS7A01G518600 chr7D 82.827 3523 373 132 838 4248 611857669 611854267 0.000000e+00 2940.0
7 TraesCS7A01G518600 chr7D 95.775 1775 56 7 2762 4521 612327527 612329297 0.000000e+00 2844.0
8 TraesCS7A01G518600 chr7D 83.150 2813 303 92 1333 4049 612287028 612289765 0.000000e+00 2410.0
9 TraesCS7A01G518600 chr7D 80.875 1783 269 41 922 2666 612403623 612405371 0.000000e+00 1338.0
10 TraesCS7A01G518600 chr7D 82.000 1600 223 39 983 2568 595346729 595348277 0.000000e+00 1299.0
11 TraesCS7A01G518600 chr7D 83.387 933 125 18 1713 2640 595348292 595349199 0.000000e+00 837.0
12 TraesCS7A01G518600 chr7D 80.756 582 72 22 3499 4070 612406090 612406641 6.990000e-113 418.0
13 TraesCS7A01G518600 chr7D 79.141 652 82 24 2863 3491 595349207 595349827 7.040000e-108 401.0
14 TraesCS7A01G518600 chr7D 85.340 191 27 1 3023 3212 612405483 612405673 3.570000e-46 196.0
15 TraesCS7A01G518600 chr7B 90.449 2136 138 28 2002 4102 701647730 701649834 0.000000e+00 2754.0
16 TraesCS7A01G518600 chr7B 85.281 2310 238 63 835 3118 701457396 701459629 0.000000e+00 2289.0
17 TraesCS7A01G518600 chr7B 89.511 1268 97 19 16 1275 701643732 701644971 0.000000e+00 1572.0
18 TraesCS7A01G518600 chr7B 81.872 1699 256 31 982 2666 672770098 672771758 0.000000e+00 1384.0
19 TraesCS7A01G518600 chr7B 95.553 742 33 0 1268 2009 701645934 701646675 0.000000e+00 1188.0
20 TraesCS7A01G518600 chr7B 91.957 373 24 2 4148 4520 701649833 701650199 6.700000e-143 518.0
21 TraesCS7A01G518600 chr7B 79.623 795 90 36 3308 4049 701459812 701460587 5.220000e-139 505.0
22 TraesCS7A01G518600 chrUn 84.301 758 85 22 829 1583 324305047 324304321 0.000000e+00 710.0
23 TraesCS7A01G518600 chrUn 84.169 758 86 22 829 1583 324358662 324357936 0.000000e+00 704.0
24 TraesCS7A01G518600 chrUn 84.450 746 76 26 835 1577 87707587 87708295 0.000000e+00 699.0
25 TraesCS7A01G518600 chrUn 78.987 790 96 34 3308 4044 368811829 368812601 4.090000e-130 475.0
26 TraesCS7A01G518600 chrUn 81.879 447 59 15 1586 2029 388947917 388948344 1.550000e-94 357.0
27 TraesCS7A01G518600 chrUn 94.915 59 1 1 4153 4209 465862360 465862302 1.730000e-14 91.6
28 TraesCS7A01G518600 chr4A 85.294 102 14 1 26 127 742062366 742062466 2.220000e-18 104.0
29 TraesCS7A01G518600 chr1B 84.524 84 8 4 2665 2745 327570073 327569992 1.350000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G518600 chr7A 702406461 702410981 4520 False 8349.000000 8349 100.000000 1 4521 1 chr7A.!!$F3 4520
1 TraesCS7A01G518600 chr7A 702237702 702240618 2916 False 2407.000000 2407 82.169000 1344 4248 1 chr7A.!!$F2 2904
2 TraesCS7A01G518600 chr7A 688345399 688347067 1668 False 1454.000000 1454 82.619000 983 2664 1 chr7A.!!$F1 1681
3 TraesCS7A01G518600 chr7A 702610715 702612445 1730 False 1290.000000 1290 80.451000 919 2666 1 chr7A.!!$F4 1747
4 TraesCS7A01G518600 chr7D 611868013 611871164 3151 True 3679.000000 3679 87.881000 1348 4520 1 chr7D.!!$R2 3172
5 TraesCS7A01G518600 chr7D 612324829 612329297 4468 False 3476.000000 4108 94.955000 11 4521 2 chr7D.!!$F3 4510
6 TraesCS7A01G518600 chr7D 611854267 611857669 3402 True 2940.000000 2940 82.827000 838 4248 1 chr7D.!!$R1 3410
7 TraesCS7A01G518600 chr7D 612287028 612289765 2737 False 2410.000000 2410 83.150000 1333 4049 1 chr7D.!!$F1 2716
8 TraesCS7A01G518600 chr7D 595346729 595349827 3098 False 845.666667 1299 81.509333 983 3491 3 chr7D.!!$F2 2508
9 TraesCS7A01G518600 chr7D 612403623 612406641 3018 False 650.666667 1338 82.323667 922 4070 3 chr7D.!!$F4 3148
10 TraesCS7A01G518600 chr7B 701643732 701650199 6467 False 1508.000000 2754 91.867500 16 4520 4 chr7B.!!$F3 4504
11 TraesCS7A01G518600 chr7B 701457396 701460587 3191 False 1397.000000 2289 82.452000 835 4049 2 chr7B.!!$F2 3214
12 TraesCS7A01G518600 chr7B 672770098 672771758 1660 False 1384.000000 1384 81.872000 982 2666 1 chr7B.!!$F1 1684
13 TraesCS7A01G518600 chrUn 324304321 324305047 726 True 710.000000 710 84.301000 829 1583 1 chrUn.!!$R1 754
14 TraesCS7A01G518600 chrUn 324357936 324358662 726 True 704.000000 704 84.169000 829 1583 1 chrUn.!!$R2 754
15 TraesCS7A01G518600 chrUn 87707587 87708295 708 False 699.000000 699 84.450000 835 1577 1 chrUn.!!$F1 742
16 TraesCS7A01G518600 chrUn 368811829 368812601 772 False 475.000000 475 78.987000 3308 4044 1 chrUn.!!$F2 736


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 828 0.321210 TACCACACATCAACGCTGGG 60.321 55.0 0.0 0.0 0.00 4.45 F
1663 2706 0.819259 GGCTGTGTTCCTTGACTGCA 60.819 55.0 0.0 0.0 38.42 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2567 5563 0.524862 CCACAGAAGAACATGCCTGC 59.475 55.000 0.0 0.0 0.00 4.85 R
3632 6858 1.202758 ACGCCAGATGACCAGTTCAAA 60.203 47.619 0.0 0.0 37.92 2.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 155 4.503314 GCAGGCTTTGGCGATGGC 62.503 66.667 6.10 6.10 39.81 4.40
143 156 2.753043 CAGGCTTTGGCGATGGCT 60.753 61.111 10.51 10.51 38.62 4.75
145 158 4.503314 GGCTTTGGCGATGGCTGC 62.503 66.667 6.90 0.00 39.81 5.25
146 159 4.842091 GCTTTGGCGATGGCTGCG 62.842 66.667 0.00 0.00 39.81 5.18
147 160 4.183686 CTTTGGCGATGGCTGCGG 62.184 66.667 0.00 0.00 39.81 5.69
270 283 5.046304 AGGCGTATATAATCACTTGCATCCT 60.046 40.000 0.00 0.00 0.00 3.24
275 288 7.276658 CGTATATAATCACTTGCATCCTCCTTC 59.723 40.741 0.00 0.00 0.00 3.46
300 313 7.926555 TCGCTAGTTTCCATCTTCCTTTTATAG 59.073 37.037 0.00 0.00 0.00 1.31
308 321 6.844388 TCCATCTTCCTTTTATAGCCAGAGTA 59.156 38.462 0.00 0.00 0.00 2.59
321 334 4.331968 AGCCAGAGTAGGATCGAGATAAG 58.668 47.826 0.00 0.00 0.00 1.73
326 339 6.540914 CCAGAGTAGGATCGAGATAAGGATAC 59.459 46.154 0.00 0.00 0.00 2.24
357 370 1.522355 CCAGCAGATCGCCATTCGT 60.522 57.895 6.02 0.00 44.04 3.85
387 400 3.515104 CCAAAGGTGTAGAAAATGGCCAT 59.485 43.478 14.09 14.09 0.00 4.40
486 499 0.523966 CGACTCCTTGACGCTTCTCT 59.476 55.000 0.00 0.00 0.00 3.10
488 501 2.608261 CGACTCCTTGACGCTTCTCTTT 60.608 50.000 0.00 0.00 0.00 2.52
525 538 4.270153 AGCCCACCACCTCCTCCA 62.270 66.667 0.00 0.00 0.00 3.86
543 559 1.901464 ACCGCCGAATTTGCCAACT 60.901 52.632 0.00 0.00 0.00 3.16
549 565 2.432444 CCGAATTTGCCAACTACCTCA 58.568 47.619 0.00 0.00 0.00 3.86
570 586 2.028190 CCACTAGCCTCGCATCCG 59.972 66.667 0.00 0.00 0.00 4.18
597 613 2.338500 GTCTTCTTCGAATGCCGTCTT 58.662 47.619 0.00 0.00 39.75 3.01
612 628 1.737793 CGTCTTGGCACTCATTAACCC 59.262 52.381 0.00 0.00 0.00 4.11
679 695 2.239654 CCTTTTGCCCTCATCACCTCTA 59.760 50.000 0.00 0.00 0.00 2.43
689 705 2.357952 TCATCACCTCTATCGTTCACCG 59.642 50.000 0.00 0.00 38.13 4.94
715 731 3.554692 CGCCGCGCTAAGTCAAGG 61.555 66.667 5.56 0.00 0.00 3.61
811 828 0.321210 TACCACACATCAACGCTGGG 60.321 55.000 0.00 0.00 0.00 4.45
836 856 7.093992 GCTGGGTTTATACTTGCAACAATAAA 58.906 34.615 13.63 13.63 0.00 1.40
939 965 3.311110 GCGTCAGTCCCCACTCCA 61.311 66.667 0.00 0.00 0.00 3.86
1307 2316 2.361992 CCCCATCAAGCAGCAGCA 60.362 61.111 3.17 0.00 45.49 4.41
1356 2380 2.653115 CACTGGAGAGACAGCGCA 59.347 61.111 11.47 0.00 42.21 6.09
1606 2643 3.916392 AACCTCGACGGCTTGCTCG 62.916 63.158 0.00 0.00 35.61 5.03
1663 2706 0.819259 GGCTGTGTTCCTTGACTGCA 60.819 55.000 0.00 0.00 38.42 4.41
1772 2815 2.159517 CCGAGCTTAAGCAATTGACCAC 60.160 50.000 28.39 7.63 45.16 4.16
2412 5408 2.768527 TCCTTGGATGCTCTCGAAGAAT 59.231 45.455 11.32 0.00 40.96 2.40
2521 5517 0.820871 GTCAAGCTGTCCGAGGAGAT 59.179 55.000 0.00 0.00 0.00 2.75
2543 5539 3.134623 TCTCGGCAAGTAATGATGGATGT 59.865 43.478 0.00 0.00 0.00 3.06
2545 5541 2.945008 CGGCAAGTAATGATGGATGTGT 59.055 45.455 0.00 0.00 0.00 3.72
2566 5562 9.725019 ATGTGTAAAGATAGTCAACATCTTCAA 57.275 29.630 0.00 0.00 40.92 2.69
2567 5563 9.208022 TGTGTAAAGATAGTCAACATCTTCAAG 57.792 33.333 0.00 0.00 40.92 3.02
2568 5564 8.171840 GTGTAAAGATAGTCAACATCTTCAAGC 58.828 37.037 0.00 0.00 40.92 4.01
2750 5751 4.142049 TGACCAAGTTTGTAAAAAGGCCAG 60.142 41.667 5.01 0.00 0.00 4.85
3181 6200 2.158798 GGTTAGCTGAGGTTACCCATCC 60.159 54.545 8.53 0.00 0.00 3.51
3205 6224 2.679996 ATCGGCCTTGGGGTTTGC 60.680 61.111 0.00 0.00 34.45 3.68
3280 6312 7.483375 GTCAGCGTGTATTATGTTTTATTTGCA 59.517 33.333 0.00 0.00 0.00 4.08
3349 6439 7.480810 ACCAAAGTTTGTTGTCTCATCTAAAC 58.519 34.615 14.36 0.00 0.00 2.01
3366 6456 5.067273 TCTAAACTTTTCATTGGCCTTCGA 58.933 37.500 3.32 0.00 0.00 3.71
3371 6461 3.641437 TTTCATTGGCCTTCGAGTTTG 57.359 42.857 3.32 0.00 0.00 2.93
3514 6719 0.674581 GCAGCCAAAATTGCCCTTCC 60.675 55.000 0.00 0.00 34.28 3.46
3632 6858 1.676006 CTCGGGACTTTGCTTTGTTGT 59.324 47.619 0.00 0.00 0.00 3.32
3641 6867 4.690280 ACTTTGCTTTGTTGTTTGAACTGG 59.310 37.500 0.00 0.00 0.00 4.00
3661 6897 2.143122 GTCATCTGGCGTGTTCTTTCA 58.857 47.619 0.00 0.00 0.00 2.69
3718 6956 7.298122 CACAGTTATATGTTGTGTGGTTTCTC 58.702 38.462 7.51 0.00 37.89 2.87
3825 7063 6.152831 GCCTATGGTTTCAGTTCCTATTTTGT 59.847 38.462 0.00 0.00 0.00 2.83
3826 7064 7.309805 GCCTATGGTTTCAGTTCCTATTTTGTT 60.310 37.037 0.00 0.00 0.00 2.83
3839 7077 8.968242 GTTCCTATTTTGTTCTGTTTCATTGTC 58.032 33.333 0.00 0.00 0.00 3.18
3840 7078 7.359595 TCCTATTTTGTTCTGTTTCATTGTCG 58.640 34.615 0.00 0.00 0.00 4.35
3841 7079 7.012894 TCCTATTTTGTTCTGTTTCATTGTCGT 59.987 33.333 0.00 0.00 0.00 4.34
4045 7330 5.562506 CAGAATCTGCATCATCTTGTGTT 57.437 39.130 0.00 0.00 0.00 3.32
4105 7390 1.134280 AGTGTGAGATATGCAGGGTGC 60.134 52.381 0.00 0.00 45.29 5.01
4120 7405 1.282157 GGGTGCTAGTTGATTCCTGGT 59.718 52.381 0.00 0.00 0.00 4.00
4128 7413 2.069273 GTTGATTCCTGGTGACACTCG 58.931 52.381 5.39 0.00 35.60 4.18
4219 7818 1.294659 GGCTTGAGTGAGGAACTGCG 61.295 60.000 0.00 0.00 41.55 5.18
4248 7847 1.862827 AGTTCGTCAAAGCGGTTGTAC 59.137 47.619 0.00 1.20 38.47 2.90
4296 7895 0.996462 GCGTCGACCGATTCATGAAA 59.004 50.000 13.09 0.00 39.56 2.69
4322 7921 5.009110 TGAATTTCAATCTACGTTGTTGGCA 59.991 36.000 0.00 0.00 0.00 4.92
4339 7938 2.293122 TGGCACATGCTTAAGTTGACAC 59.707 45.455 12.65 4.78 41.70 3.67
4346 7945 3.128349 TGCTTAAGTTGACACGAAGGAC 58.872 45.455 4.02 0.00 0.00 3.85
4443 8042 0.861837 CGTGGATATTCGGCTTGAGC 59.138 55.000 0.00 0.00 41.14 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.047560 CGTCGGGGGTTGTTCCTC 60.048 66.667 0.00 0.00 36.25 3.71
57 58 0.906756 CCCCTCTCAGTTGCTCTCCA 60.907 60.000 0.00 0.00 0.00 3.86
58 59 0.616111 TCCCCTCTCAGTTGCTCTCC 60.616 60.000 0.00 0.00 0.00 3.71
127 128 2.753043 CAGCCATCGCCAAAGCCT 60.753 61.111 0.00 0.00 34.57 4.58
146 159 4.825679 CCCTCACCCTCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
147 160 3.695825 TCCCTCACCCTCCCTCCC 61.696 72.222 0.00 0.00 0.00 4.30
148 161 2.041405 CTCCCTCACCCTCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
149 162 1.075600 CTCTCCCTCACCCTCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
150 163 3.114390 CTCTCCCTCACCCTCCCT 58.886 66.667 0.00 0.00 0.00 4.20
151 164 2.766229 GCTCTCCCTCACCCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
152 165 2.063378 CAGCTCTCCCTCACCCTCC 61.063 68.421 0.00 0.00 0.00 4.30
153 166 2.063378 CCAGCTCTCCCTCACCCTC 61.063 68.421 0.00 0.00 0.00 4.30
154 167 2.040278 CCAGCTCTCCCTCACCCT 59.960 66.667 0.00 0.00 0.00 4.34
155 168 2.039624 TCCAGCTCTCCCTCACCC 59.960 66.667 0.00 0.00 0.00 4.61
156 169 2.063378 CCTCCAGCTCTCCCTCACC 61.063 68.421 0.00 0.00 0.00 4.02
211 224 4.854784 GCTCTCGCGACCGCATCA 62.855 66.667 17.21 0.00 42.06 3.07
241 254 4.803098 AGTGATTATATACGCCTCACCC 57.197 45.455 8.96 0.00 37.52 4.61
249 262 6.634805 AGGAGGATGCAAGTGATTATATACG 58.365 40.000 0.00 0.00 0.00 3.06
270 283 3.118738 GGAAGATGGAAACTAGCGAAGGA 60.119 47.826 0.00 0.00 0.00 3.36
275 288 6.927294 ATAAAAGGAAGATGGAAACTAGCG 57.073 37.500 0.00 0.00 0.00 4.26
300 313 3.442273 CCTTATCTCGATCCTACTCTGGC 59.558 52.174 0.00 0.00 0.00 4.85
308 321 6.887545 CACCTAAGTATCCTTATCTCGATCCT 59.112 42.308 0.00 0.00 32.82 3.24
321 334 3.681874 GCTGGGTTGACACCTAAGTATCC 60.682 52.174 0.00 0.00 43.65 2.59
326 339 1.347707 TCTGCTGGGTTGACACCTAAG 59.652 52.381 0.00 0.00 43.65 2.18
357 370 7.432869 CATTTTCTACACCTTTGGATCAACAA 58.567 34.615 0.00 0.00 0.00 2.83
486 499 3.513566 GGGTGTGGGGTGGGGAAA 61.514 66.667 0.00 0.00 0.00 3.13
488 501 4.626745 ATGGGTGTGGGGTGGGGA 62.627 66.667 0.00 0.00 0.00 4.81
525 538 0.606944 TAGTTGGCAAATTCGGCGGT 60.607 50.000 5.17 0.00 0.00 5.68
543 559 1.008403 AGGCTAGTGGGTCTGAGGTA 58.992 55.000 0.00 0.00 0.00 3.08
549 565 1.381872 ATGCGAGGCTAGTGGGTCT 60.382 57.895 0.00 0.00 0.00 3.85
570 586 4.025647 CGGCATTCGAAGAAGACCTTATTC 60.026 45.833 3.35 6.98 45.90 1.75
597 613 2.504175 GGTAGAGGGTTAATGAGTGCCA 59.496 50.000 0.00 0.00 0.00 4.92
612 628 1.556911 AGATTGCACAGGGTGGTAGAG 59.443 52.381 0.00 0.00 33.64 2.43
653 669 1.281867 TGATGAGGGCAAAAGGTCGAT 59.718 47.619 0.00 0.00 0.00 3.59
811 828 4.513198 TTGTTGCAAGTATAAACCCAGC 57.487 40.909 0.00 0.00 0.00 4.85
861 881 4.940046 TGAGTAAGTAGTACGAGGTTCCAG 59.060 45.833 0.00 0.00 37.81 3.86
1307 2316 2.383601 GGGACGGGTTGATGGGGAT 61.384 63.158 0.00 0.00 0.00 3.85
1331 2349 0.390998 GTCTCTCCAGTGCTCCTTGC 60.391 60.000 0.00 0.00 43.25 4.01
1356 2380 2.990479 GAGTTGATGGGGACGCCT 59.010 61.111 10.28 0.00 0.00 5.52
1401 2425 3.289525 AAGTCGAGCTTCTCCGGG 58.710 61.111 0.00 0.00 30.06 5.73
1583 2620 3.530910 AAGCCGTCGAGGTTGGTGG 62.531 63.158 4.18 0.00 43.70 4.61
1588 2625 2.048127 GAGCAAGCCGTCGAGGTT 60.048 61.111 4.18 0.00 43.70 3.50
1655 2692 2.236146 ACGACCCTAATGATGCAGTCAA 59.764 45.455 0.00 0.00 40.97 3.18
1663 2706 2.481449 GCGAGTTGACGACCCTAATGAT 60.481 50.000 0.00 0.00 35.09 2.45
1772 2815 1.086696 CACCACCGCTGTAAATGAGG 58.913 55.000 0.00 0.00 0.00 3.86
2173 4297 2.162681 CCCAAGGAGATGAACCACAAC 58.837 52.381 0.00 0.00 0.00 3.32
2275 4402 6.080969 ACCACACAATGTATTATTGGGGTA 57.919 37.500 9.47 0.00 37.12 3.69
2276 4403 4.941713 ACCACACAATGTATTATTGGGGT 58.058 39.130 6.81 6.53 36.77 4.95
2385 5381 2.352617 CGAGAGCATCCAAGGAGATAGC 60.353 54.545 0.00 0.00 33.66 2.97
2412 5408 3.000041 CGTCGAATCCATTGAACTCCAA 59.000 45.455 0.00 0.00 39.41 3.53
2521 5517 3.134623 ACATCCATCATTACTTGCCGAGA 59.865 43.478 0.00 0.00 0.00 4.04
2543 5539 7.877612 TGCTTGAAGATGTTGACTATCTTTACA 59.122 33.333 0.00 0.00 43.07 2.41
2545 5541 7.550551 CCTGCTTGAAGATGTTGACTATCTTTA 59.449 37.037 0.00 0.00 43.07 1.85
2566 5562 1.531423 CACAGAAGAACATGCCTGCT 58.469 50.000 0.00 0.00 0.00 4.24
2567 5563 0.524862 CCACAGAAGAACATGCCTGC 59.475 55.000 0.00 0.00 0.00 4.85
2568 5564 2.189594 TCCACAGAAGAACATGCCTG 57.810 50.000 0.00 0.00 0.00 4.85
2705 5706 3.619233 ACTTTGCACCGTTTGACATAC 57.381 42.857 0.00 0.00 0.00 2.39
2809 5812 3.698539 TCTCAAGTCAAATGGTGCAAACA 59.301 39.130 0.00 0.00 0.00 2.83
2810 5813 4.305989 TCTCAAGTCAAATGGTGCAAAC 57.694 40.909 0.00 0.00 0.00 2.93
2894 5906 4.025730 GCATGTCAACGACACATATTCGAT 60.026 41.667 0.00 0.00 45.65 3.59
2981 5993 2.158623 AGGGTCTGAGCACACAAATTCA 60.159 45.455 9.30 0.00 0.00 2.57
3072 6088 5.179452 AGAGCAATTTAGGTAAGGAAGCA 57.821 39.130 0.00 0.00 0.00 3.91
3205 6224 8.262715 ACTTTAACTGGAACCAAAATTTGTTG 57.737 30.769 4.92 0.00 0.00 3.33
3280 6312 5.939883 TGCTACTGAATACAGATGCAAAACT 59.060 36.000 14.54 0.00 46.03 2.66
3349 6439 3.923017 AACTCGAAGGCCAATGAAAAG 57.077 42.857 5.01 0.00 0.00 2.27
3366 6456 7.013655 ACAATATGCTGAGAACAGAAACAAACT 59.986 33.333 0.00 0.00 46.03 2.66
3371 6461 6.246420 ACACAATATGCTGAGAACAGAAAC 57.754 37.500 0.00 0.00 46.03 2.78
3514 6719 5.122869 CAGACCTAAGGTTGACAATCATGTG 59.877 44.000 0.39 0.00 36.39 3.21
3632 6858 1.202758 ACGCCAGATGACCAGTTCAAA 60.203 47.619 0.00 0.00 37.92 2.69
3641 6867 2.096218 GTGAAAGAACACGCCAGATGAC 60.096 50.000 0.00 0.00 0.00 3.06
3718 6956 9.791820 TGCATTAATTCAATAGTCAAATGTCAG 57.208 29.630 0.00 0.00 0.00 3.51
3825 7063 3.449632 TCGTCACGACAATGAAACAGAA 58.550 40.909 0.00 0.00 0.00 3.02
3826 7064 3.086818 TCGTCACGACAATGAAACAGA 57.913 42.857 0.00 0.00 0.00 3.41
3840 7078 0.778815 CAAAGAGCTGTCGTCGTCAC 59.221 55.000 0.00 0.00 0.00 3.67
3841 7079 0.384309 ACAAAGAGCTGTCGTCGTCA 59.616 50.000 0.00 0.00 0.00 4.35
4105 7390 4.499183 GAGTGTCACCAGGAATCAACTAG 58.501 47.826 0.00 0.00 0.00 2.57
4128 7413 2.223433 GCCATAGATTGCACTCAAGCAC 60.223 50.000 6.84 0.00 45.61 4.40
4219 7818 2.476854 GCTTTGACGAACTCATCATGCC 60.477 50.000 0.00 0.00 0.00 4.40
4296 7895 6.668323 CCAACAACGTAGATTGAAATTCAGT 58.332 36.000 7.68 0.00 33.57 3.41
4314 7913 3.382865 TCAACTTAAGCATGTGCCAACAA 59.617 39.130 1.29 0.00 40.46 2.83
4322 7921 3.498397 CCTTCGTGTCAACTTAAGCATGT 59.502 43.478 1.29 0.00 0.00 3.21
4339 7938 0.905357 AATCTGGGTCCTGTCCTTCG 59.095 55.000 0.00 0.00 0.00 3.79
4346 7945 1.419387 GATGGAGGAATCTGGGTCCTG 59.581 57.143 0.00 0.00 45.87 3.86
4443 8042 3.626670 ACTCATCTTACCGTAGTTCCTCG 59.373 47.826 0.00 0.00 0.00 4.63
4488 8087 1.604593 GCACAACCAGACTGCCCAT 60.605 57.895 0.00 0.00 0.00 4.00



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.