Multiple sequence alignment - TraesCS7A01G517600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G517600 chr7A 100.000 7652 0 0 1 7652 701636290 701628639 0.000000e+00 14131.0
1 TraesCS7A01G517600 chr7A 90.228 307 18 6 9 303 202736172 202736478 2.590000e-104 390.0
2 TraesCS7A01G517600 chr7B 94.173 3604 155 29 1316 4891 701177652 701174076 0.000000e+00 5441.0
3 TraesCS7A01G517600 chr7B 95.263 1710 71 3 5037 6743 701174090 701172388 0.000000e+00 2700.0
4 TraesCS7A01G517600 chr7B 92.485 1131 47 19 6220 7315 701158180 701157053 0.000000e+00 1583.0
5 TraesCS7A01G517600 chr7B 94.242 990 47 3 5236 6222 701159275 701158293 0.000000e+00 1504.0
6 TraesCS7A01G517600 chr7B 89.675 891 58 22 6731 7613 701172363 701171499 0.000000e+00 1105.0
7 TraesCS7A01G517600 chr7B 87.815 952 80 18 355 1290 701178751 701177820 0.000000e+00 1083.0
8 TraesCS7A01G517600 chr7B 87.866 239 23 4 7323 7559 701155226 701154992 7.560000e-70 276.0
9 TraesCS7A01G517600 chr7D 92.788 2690 114 32 1316 3939 611716002 611713327 0.000000e+00 3819.0
10 TraesCS7A01G517600 chr7D 94.621 1041 47 3 5037 6077 611712415 611711384 0.000000e+00 1604.0
11 TraesCS7A01G517600 chr7D 95.894 828 27 2 4071 4891 611713228 611712401 0.000000e+00 1334.0
12 TraesCS7A01G517600 chr7D 97.953 684 14 0 6060 6743 611711336 611710653 0.000000e+00 1186.0
13 TraesCS7A01G517600 chr7D 93.257 697 40 4 6742 7435 611710618 611709926 0.000000e+00 1020.0
14 TraesCS7A01G517600 chr7D 85.817 832 67 23 496 1290 611716982 611716165 0.000000e+00 835.0
15 TraesCS7A01G517600 chr7D 86.667 150 12 4 4891 5037 136417218 136417362 7.950000e-35 159.0
16 TraesCS7A01G517600 chr7D 87.681 138 12 4 7516 7652 611709894 611709761 1.030000e-33 156.0
17 TraesCS7A01G517600 chr2A 93.204 309 20 1 1 309 525734891 525734584 3.260000e-123 453.0
18 TraesCS7A01G517600 chr2A 91.830 306 22 1 1 303 753247428 753247123 2.550000e-114 424.0
19 TraesCS7A01G517600 chr1A 92.763 304 19 3 1 303 458449502 458449803 3.280000e-118 436.0
20 TraesCS7A01G517600 chr1A 93.827 81 4 1 3951 4031 42110027 42109948 3.750000e-23 121.0
21 TraesCS7A01G517600 chr1B 91.586 309 24 2 2 310 614339524 614339218 7.100000e-115 425.0
22 TraesCS7A01G517600 chr5A 91.558 308 19 5 1 307 428156587 428156888 1.190000e-112 418.0
23 TraesCS7A01G517600 chr5A 91.419 303 20 5 1 303 412183802 412183506 1.990000e-110 411.0
24 TraesCS7A01G517600 chr5A 90.236 297 25 3 7 303 134097958 134098250 1.200000e-102 385.0
25 TraesCS7A01G517600 chr3A 91.441 222 16 2 83 303 643162694 643162913 1.250000e-77 302.0
26 TraesCS7A01G517600 chr6B 81.250 304 33 18 988 1272 186589481 186589779 2.780000e-54 224.0
27 TraesCS7A01G517600 chr6B 85.876 177 25 0 2687 2863 186591811 186591987 1.010000e-43 189.0
28 TraesCS7A01G517600 chr6D 86.441 177 24 0 2687 2863 101492070 101492246 2.180000e-45 195.0
29 TraesCS7A01G517600 chr6D 88.000 150 18 0 1804 1953 101490858 101491007 2.190000e-40 178.0
30 TraesCS7A01G517600 chr6D 89.362 94 5 1 3948 4036 84938546 84938453 6.280000e-21 113.0
31 TraesCS7A01G517600 chr6D 89.535 86 4 1 3951 4031 84938458 84938543 3.780000e-18 104.0
32 TraesCS7A01G517600 chr6A 87.333 150 19 0 1804 1953 121970739 121970888 1.020000e-38 172.0
33 TraesCS7A01G517600 chr4B 88.764 89 5 1 3947 4030 139763250 139763338 3.780000e-18 104.0
34 TraesCS7A01G517600 chr2D 87.209 86 7 1 3951 4032 145889636 145889551 2.270000e-15 95.3
35 TraesCS7A01G517600 chr2D 86.667 90 7 1 3948 4032 615126521 615126610 2.270000e-15 95.3
36 TraesCS7A01G517600 chr2D 85.227 88 8 1 3949 4031 393568218 393568305 1.370000e-12 86.1
37 TraesCS7A01G517600 chr2B 87.209 86 7 1 3951 4032 206113938 206113853 2.270000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G517600 chr7A 701628639 701636290 7651 True 14131.00 14131 100.0000 1 7652 1 chr7A.!!$R1 7651
1 TraesCS7A01G517600 chr7B 701171499 701178751 7252 True 2582.25 5441 91.7315 355 7613 4 chr7B.!!$R2 7258
2 TraesCS7A01G517600 chr7B 701154992 701159275 4283 True 1121.00 1583 91.5310 5236 7559 3 chr7B.!!$R1 2323
3 TraesCS7A01G517600 chr7D 611709761 611716982 7221 True 1422.00 3819 92.5730 496 7652 7 chr7D.!!$R1 7156
4 TraesCS7A01G517600 chr6B 186589481 186591987 2506 False 206.50 224 83.5630 988 2863 2 chr6B.!!$F1 1875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.107312 CACTAGCTTGATGGCCTGCT 60.107 55.000 3.32 8.55 39.30 4.24 F
145 146 0.178068 AGATAAATGAGCCGTGCCGT 59.822 50.000 0.00 0.00 0.00 5.68 F
1272 1340 0.248661 CGCAGTACATCCTCGAGGTG 60.249 60.000 30.17 26.51 36.34 4.00 F
1275 1343 0.324368 AGTACATCCTCGAGGTGCCA 60.324 55.000 30.17 12.38 29.94 4.92 F
1302 1391 0.462047 CCCAGCTTTACTTCCGCGAT 60.462 55.000 8.23 0.00 0.00 4.58 F
1325 1640 0.527565 ACGCTTGGAATTGGACATGC 59.472 50.000 0.00 0.00 35.25 4.06 F
1736 2178 0.949105 AACGGGCTTTCTACGCAGTG 60.949 55.000 0.00 0.00 45.73 3.66 F
3409 4255 1.135199 GGTTGGCTGATTGCACTCATG 60.135 52.381 7.26 3.58 45.15 3.07 F
4064 4913 1.894466 TGAATCCACCAAGCATGTTGG 59.106 47.619 19.38 19.38 44.91 3.77 F
4910 5826 0.109597 GCCATTCTGCGTTTGACCTG 60.110 55.000 0.00 0.00 0.00 4.00 F
4915 5831 0.321564 TCTGCGTTTGACCTGGGATG 60.322 55.000 0.00 0.00 0.00 3.51 F
4954 5870 0.333993 TGCTCCGTAACCTACCTCCT 59.666 55.000 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1392 0.179004 TGTCCAATTCCAAGCGTGGT 60.179 50.000 18.61 0.00 46.11 4.16 R
1306 1395 0.527565 GCATGTCCAATTCCAAGCGT 59.472 50.000 0.00 0.00 0.00 5.07 R
3117 3963 0.319813 GGTCCCAAAAGCATGTGCAC 60.320 55.000 10.75 10.75 45.16 4.57 R
3130 3976 5.263872 ACACATAAAATTACCAGGTCCCA 57.736 39.130 0.00 0.00 0.00 4.37 R
3131 3977 6.541278 GTCTACACATAAAATTACCAGGTCCC 59.459 42.308 0.00 0.00 0.00 4.46 R
3285 4131 8.794335 AGGATAGGTCACAAAGAAGAAAATAC 57.206 34.615 0.00 0.00 0.00 1.89 R
3605 4453 4.080863 CCCTTCTAGCATTGTCCTGTAAGT 60.081 45.833 0.00 0.00 0.00 2.24 R
4891 5807 0.109597 CAGGTCAAACGCAGAATGGC 60.110 55.000 0.00 0.00 35.86 4.40 R
5427 6343 0.036577 CTGGAGAAGCTGGGTCACTG 60.037 60.000 0.00 0.00 0.00 3.66 R
6151 7136 0.614979 TGTCCCTCCTGTAGTCCAGC 60.615 60.000 0.00 0.00 40.06 4.85 R
6393 7493 1.324736 CCTATTTCTTCGTCAGTGCGC 59.675 52.381 0.00 0.00 0.00 6.09 R
6705 7807 2.760374 CTAAATGGACGATGGAGCCTC 58.240 52.381 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.087892 CACGCTGGCCCACTAGCT 62.088 66.667 10.75 0.00 37.78 3.32
30 31 3.322466 ACGCTGGCCCACTAGCTT 61.322 61.111 10.75 0.00 37.78 3.74
31 32 2.821366 CGCTGGCCCACTAGCTTG 60.821 66.667 10.75 0.00 37.78 4.01
32 33 2.671070 GCTGGCCCACTAGCTTGA 59.329 61.111 0.00 0.00 36.99 3.02
33 34 1.225704 GCTGGCCCACTAGCTTGAT 59.774 57.895 0.00 0.00 36.99 2.57
34 35 1.099879 GCTGGCCCACTAGCTTGATG 61.100 60.000 0.00 0.00 36.99 3.07
35 36 0.465097 CTGGCCCACTAGCTTGATGG 60.465 60.000 0.00 6.04 0.00 3.51
36 37 1.825622 GGCCCACTAGCTTGATGGC 60.826 63.158 18.63 18.63 38.16 4.40
37 38 1.825622 GCCCACTAGCTTGATGGCC 60.826 63.158 16.98 0.00 32.74 5.36
38 39 1.918253 CCCACTAGCTTGATGGCCT 59.082 57.895 3.32 0.00 31.66 5.19
39 40 0.465097 CCCACTAGCTTGATGGCCTG 60.465 60.000 3.32 0.00 31.66 4.85
40 41 1.099879 CCACTAGCTTGATGGCCTGC 61.100 60.000 3.32 0.42 0.00 4.85
41 42 0.107312 CACTAGCTTGATGGCCTGCT 60.107 55.000 3.32 8.55 39.30 4.24
42 43 1.139654 CACTAGCTTGATGGCCTGCTA 59.860 52.381 3.32 9.24 37.02 3.49
43 44 2.166821 CTAGCTTGATGGCCTGCTAG 57.833 55.000 19.37 19.37 45.56 3.42
44 45 0.761187 TAGCTTGATGGCCTGCTAGG 59.239 55.000 3.32 0.00 38.80 3.02
45 46 1.225704 GCTTGATGGCCTGCTAGGT 59.774 57.895 3.32 0.00 37.80 3.08
46 47 0.394899 GCTTGATGGCCTGCTAGGTT 60.395 55.000 3.32 0.00 37.80 3.50
47 48 1.386533 CTTGATGGCCTGCTAGGTTG 58.613 55.000 3.32 0.00 37.80 3.77
48 49 0.698238 TTGATGGCCTGCTAGGTTGT 59.302 50.000 3.32 0.00 37.80 3.32
49 50 0.698238 TGATGGCCTGCTAGGTTGTT 59.302 50.000 3.32 0.00 37.80 2.83
50 51 1.075374 TGATGGCCTGCTAGGTTGTTT 59.925 47.619 3.32 0.00 37.80 2.83
51 52 1.745653 GATGGCCTGCTAGGTTGTTTC 59.254 52.381 3.32 0.00 37.80 2.78
52 53 0.771127 TGGCCTGCTAGGTTGTTTCT 59.229 50.000 3.32 0.00 37.80 2.52
53 54 1.144913 TGGCCTGCTAGGTTGTTTCTT 59.855 47.619 3.32 0.00 37.80 2.52
54 55 1.813178 GGCCTGCTAGGTTGTTTCTTC 59.187 52.381 0.00 0.00 37.80 2.87
55 56 1.464997 GCCTGCTAGGTTGTTTCTTCG 59.535 52.381 4.45 0.00 37.80 3.79
56 57 2.076863 CCTGCTAGGTTGTTTCTTCGG 58.923 52.381 0.00 0.00 0.00 4.30
57 58 1.464997 CTGCTAGGTTGTTTCTTCGGC 59.535 52.381 0.00 0.00 0.00 5.54
58 59 1.071699 TGCTAGGTTGTTTCTTCGGCT 59.928 47.619 0.00 0.00 0.00 5.52
59 60 1.464997 GCTAGGTTGTTTCTTCGGCTG 59.535 52.381 0.00 0.00 0.00 4.85
60 61 2.870435 GCTAGGTTGTTTCTTCGGCTGA 60.870 50.000 0.00 0.00 0.00 4.26
61 62 2.568623 AGGTTGTTTCTTCGGCTGAT 57.431 45.000 0.00 0.00 0.00 2.90
62 63 2.863809 AGGTTGTTTCTTCGGCTGATT 58.136 42.857 0.00 0.00 0.00 2.57
63 64 3.222603 AGGTTGTTTCTTCGGCTGATTT 58.777 40.909 0.00 0.00 0.00 2.17
64 65 3.636764 AGGTTGTTTCTTCGGCTGATTTT 59.363 39.130 0.00 0.00 0.00 1.82
65 66 3.735746 GGTTGTTTCTTCGGCTGATTTTG 59.264 43.478 0.00 0.00 0.00 2.44
66 67 3.641437 TGTTTCTTCGGCTGATTTTGG 57.359 42.857 0.00 0.00 0.00 3.28
67 68 2.288152 TGTTTCTTCGGCTGATTTTGGC 60.288 45.455 0.00 0.00 0.00 4.52
68 69 0.887933 TTCTTCGGCTGATTTTGGCC 59.112 50.000 0.00 0.00 44.43 5.36
69 70 0.965363 TCTTCGGCTGATTTTGGCCC 60.965 55.000 0.00 0.00 45.01 5.80
70 71 2.270297 CTTCGGCTGATTTTGGCCCG 62.270 60.000 0.00 0.00 45.01 6.13
71 72 4.496927 CGGCTGATTTTGGCCCGC 62.497 66.667 0.00 0.00 45.01 6.13
72 73 3.070576 GGCTGATTTTGGCCCGCT 61.071 61.111 0.00 0.00 42.30 5.52
73 74 2.182537 GCTGATTTTGGCCCGCTG 59.817 61.111 0.00 0.00 0.00 5.18
74 75 2.887360 CTGATTTTGGCCCGCTGG 59.113 61.111 0.00 0.00 0.00 4.85
143 144 3.782889 AAAAGATAAATGAGCCGTGCC 57.217 42.857 0.00 0.00 0.00 5.01
144 145 1.299541 AAGATAAATGAGCCGTGCCG 58.700 50.000 0.00 0.00 0.00 5.69
145 146 0.178068 AGATAAATGAGCCGTGCCGT 59.822 50.000 0.00 0.00 0.00 5.68
146 147 0.304705 GATAAATGAGCCGTGCCGTG 59.695 55.000 0.00 0.00 0.00 4.94
147 148 1.714899 ATAAATGAGCCGTGCCGTGC 61.715 55.000 0.00 0.00 0.00 5.34
217 218 4.778143 GCCTGGCACGACCCGATT 62.778 66.667 15.17 0.00 37.83 3.34
218 219 2.897207 CCTGGCACGACCCGATTA 59.103 61.111 0.00 0.00 37.83 1.75
219 220 1.227263 CCTGGCACGACCCGATTAG 60.227 63.158 0.00 0.00 37.83 1.73
220 221 1.672854 CCTGGCACGACCCGATTAGA 61.673 60.000 0.00 0.00 37.83 2.10
221 222 0.249073 CTGGCACGACCCGATTAGAG 60.249 60.000 0.00 0.00 37.83 2.43
222 223 1.591863 GGCACGACCCGATTAGAGC 60.592 63.158 0.00 0.00 0.00 4.09
223 224 1.944676 GCACGACCCGATTAGAGCG 60.945 63.158 0.00 0.00 0.00 5.03
224 225 1.432251 CACGACCCGATTAGAGCGT 59.568 57.895 0.00 0.00 0.00 5.07
225 226 0.866061 CACGACCCGATTAGAGCGTG 60.866 60.000 0.00 0.00 42.17 5.34
226 227 1.310933 ACGACCCGATTAGAGCGTGT 61.311 55.000 0.00 0.00 0.00 4.49
227 228 0.591741 CGACCCGATTAGAGCGTGTC 60.592 60.000 0.00 0.00 33.75 3.67
228 229 0.591741 GACCCGATTAGAGCGTGTCG 60.592 60.000 0.00 0.00 0.00 4.35
229 230 4.303853 CCGATTAGAGCGTGTCGG 57.696 61.111 0.00 0.00 46.26 4.79
230 231 4.303853 CGATTAGAGCGTGTCGGG 57.696 61.111 0.00 0.00 0.00 5.14
231 232 1.432251 CGATTAGAGCGTGTCGGGT 59.568 57.895 0.00 0.00 0.00 5.28
232 233 0.591741 CGATTAGAGCGTGTCGGGTC 60.592 60.000 0.00 0.00 34.71 4.46
233 234 0.739561 GATTAGAGCGTGTCGGGTCT 59.260 55.000 0.00 0.00 45.87 3.85
234 235 0.456221 ATTAGAGCGTGTCGGGTCTG 59.544 55.000 4.67 0.00 43.99 3.51
235 236 0.892358 TTAGAGCGTGTCGGGTCTGT 60.892 55.000 4.67 0.00 43.99 3.41
236 237 1.303799 TAGAGCGTGTCGGGTCTGTC 61.304 60.000 4.67 0.00 43.99 3.51
237 238 3.628280 GAGCGTGTCGGGTCTGTCC 62.628 68.421 0.00 0.00 0.00 4.02
246 247 4.598257 GGTCTGTCCCATCACGTG 57.402 61.111 9.94 9.94 0.00 4.49
247 248 1.741770 GGTCTGTCCCATCACGTGC 60.742 63.158 11.67 0.00 0.00 5.34
248 249 1.741770 GTCTGTCCCATCACGTGCC 60.742 63.158 11.67 0.00 0.00 5.01
249 250 2.815211 CTGTCCCATCACGTGCCG 60.815 66.667 11.67 3.67 0.00 5.69
250 251 3.589654 CTGTCCCATCACGTGCCGT 62.590 63.158 11.67 0.00 42.36 5.68
265 266 4.671549 CGTGCCAGCGTGCTTGTG 62.672 66.667 0.00 0.00 0.00 3.33
266 267 4.332637 GTGCCAGCGTGCTTGTGG 62.333 66.667 0.00 0.00 0.00 4.17
269 270 3.357079 CCAGCGTGCTTGTGGGTC 61.357 66.667 0.00 0.00 0.00 4.46
270 271 3.716006 CAGCGTGCTTGTGGGTCG 61.716 66.667 0.00 0.00 0.00 4.79
271 272 4.988598 AGCGTGCTTGTGGGTCGG 62.989 66.667 0.00 0.00 0.00 4.79
274 275 2.672996 GTGCTTGTGGGTCGGCAT 60.673 61.111 0.00 0.00 37.05 4.40
275 276 2.672651 TGCTTGTGGGTCGGCATG 60.673 61.111 0.00 0.00 0.00 4.06
276 277 4.120331 GCTTGTGGGTCGGCATGC 62.120 66.667 9.90 9.90 0.00 4.06
277 278 3.443045 CTTGTGGGTCGGCATGCC 61.443 66.667 27.67 27.67 0.00 4.40
278 279 4.277009 TTGTGGGTCGGCATGCCA 62.277 61.111 34.93 19.88 35.37 4.92
279 280 4.720902 TGTGGGTCGGCATGCCAG 62.721 66.667 34.93 26.16 35.37 4.85
312 313 2.903357 CCAGCTATGGCCACGTCT 59.097 61.111 8.16 1.27 40.52 4.18
313 314 1.227380 CCAGCTATGGCCACGTCTC 60.227 63.158 8.16 0.00 40.52 3.36
314 315 1.517361 CAGCTATGGCCACGTCTCA 59.483 57.895 8.16 0.00 39.73 3.27
315 316 0.529337 CAGCTATGGCCACGTCTCAG 60.529 60.000 8.16 0.00 39.73 3.35
316 317 1.884926 GCTATGGCCACGTCTCAGC 60.885 63.158 8.16 6.56 0.00 4.26
320 321 2.045926 GGCCACGTCTCAGCCAAT 60.046 61.111 0.00 0.00 46.34 3.16
321 322 1.675641 GGCCACGTCTCAGCCAATT 60.676 57.895 0.00 0.00 46.34 2.32
322 323 1.503542 GCCACGTCTCAGCCAATTG 59.496 57.895 0.00 0.00 0.00 2.32
323 324 1.237285 GCCACGTCTCAGCCAATTGT 61.237 55.000 4.43 0.00 0.00 2.71
324 325 1.943968 GCCACGTCTCAGCCAATTGTA 60.944 52.381 4.43 0.00 0.00 2.41
325 326 1.732259 CCACGTCTCAGCCAATTGTAC 59.268 52.381 4.43 0.00 0.00 2.90
326 327 1.732259 CACGTCTCAGCCAATTGTACC 59.268 52.381 4.43 0.00 0.00 3.34
327 328 1.623811 ACGTCTCAGCCAATTGTACCT 59.376 47.619 4.43 0.00 0.00 3.08
328 329 2.829720 ACGTCTCAGCCAATTGTACCTA 59.170 45.455 4.43 0.00 0.00 3.08
329 330 3.451178 ACGTCTCAGCCAATTGTACCTAT 59.549 43.478 4.43 0.00 0.00 2.57
330 331 3.804325 CGTCTCAGCCAATTGTACCTATG 59.196 47.826 4.43 0.00 0.00 2.23
331 332 4.130118 GTCTCAGCCAATTGTACCTATGG 58.870 47.826 4.43 4.09 36.00 2.74
332 333 4.037222 TCTCAGCCAATTGTACCTATGGA 58.963 43.478 4.43 0.00 34.82 3.41
333 334 4.101585 TCTCAGCCAATTGTACCTATGGAG 59.898 45.833 4.43 2.19 34.82 3.86
334 335 3.780294 TCAGCCAATTGTACCTATGGAGT 59.220 43.478 4.43 0.00 34.82 3.85
335 336 4.966168 TCAGCCAATTGTACCTATGGAGTA 59.034 41.667 4.43 0.00 34.82 2.59
336 337 5.070446 TCAGCCAATTGTACCTATGGAGTAG 59.930 44.000 4.43 0.06 34.82 2.57
337 338 5.070446 CAGCCAATTGTACCTATGGAGTAGA 59.930 44.000 4.43 0.00 34.82 2.59
338 339 5.070580 AGCCAATTGTACCTATGGAGTAGAC 59.929 44.000 4.43 0.00 34.82 2.59
339 340 5.163343 GCCAATTGTACCTATGGAGTAGACA 60.163 44.000 4.43 0.00 34.82 3.41
340 341 6.464465 GCCAATTGTACCTATGGAGTAGACAT 60.464 42.308 4.43 0.00 34.82 3.06
341 342 6.931281 CCAATTGTACCTATGGAGTAGACATG 59.069 42.308 4.43 0.00 34.82 3.21
342 343 7.419057 CCAATTGTACCTATGGAGTAGACATGT 60.419 40.741 0.00 0.00 34.82 3.21
343 344 8.638873 CAATTGTACCTATGGAGTAGACATGTA 58.361 37.037 0.00 0.00 31.71 2.29
344 345 8.777578 ATTGTACCTATGGAGTAGACATGTAA 57.222 34.615 0.00 0.00 31.71 2.41
345 346 8.598202 TTGTACCTATGGAGTAGACATGTAAA 57.402 34.615 0.00 0.00 31.71 2.01
346 347 8.777578 TGTACCTATGGAGTAGACATGTAAAT 57.222 34.615 0.00 0.00 31.71 1.40
347 348 9.871175 TGTACCTATGGAGTAGACATGTAAATA 57.129 33.333 0.00 0.00 31.71 1.40
370 371 0.996462 GCTGCAGCGAATACGTAACA 59.004 50.000 25.23 0.00 41.98 2.41
372 373 2.030457 GCTGCAGCGAATACGTAACATT 59.970 45.455 25.23 0.00 41.98 2.71
404 405 1.620323 GAATGGCAAAGGGATATGGGC 59.380 52.381 0.00 0.00 0.00 5.36
405 406 0.562177 ATGGCAAAGGGATATGGGCA 59.438 50.000 0.00 0.00 38.44 5.36
409 410 1.133668 GCAAAGGGATATGGGCAGAGT 60.134 52.381 0.00 0.00 0.00 3.24
410 411 2.579873 CAAAGGGATATGGGCAGAGTG 58.420 52.381 0.00 0.00 0.00 3.51
445 446 0.744414 GCTCTGCCCATCTTTACGCA 60.744 55.000 0.00 0.00 0.00 5.24
449 450 1.003545 CTGCCCATCTTTACGCATTCG 60.004 52.381 0.00 0.00 42.43 3.34
454 455 3.123621 CCCATCTTTACGCATTCGCTATC 59.876 47.826 0.00 0.00 39.84 2.08
460 461 6.270815 TCTTTACGCATTCGCTATCTAAACT 58.729 36.000 0.00 0.00 39.84 2.66
461 462 6.417044 TCTTTACGCATTCGCTATCTAAACTC 59.583 38.462 0.00 0.00 39.84 3.01
462 463 3.043586 ACGCATTCGCTATCTAAACTCG 58.956 45.455 0.00 0.00 39.84 4.18
463 464 2.405357 CGCATTCGCTATCTAAACTCGG 59.595 50.000 0.00 0.00 35.30 4.63
464 465 3.639538 GCATTCGCTATCTAAACTCGGA 58.360 45.455 0.00 0.00 34.30 4.55
523 529 5.248934 TCGAGAGGTATAAGGAAAAACCCAA 59.751 40.000 0.00 0.00 40.05 4.12
541 547 1.520590 CAAACCACAAAATCAACGCGG 59.479 47.619 12.47 0.00 0.00 6.46
543 549 2.080062 CCACAAAATCAACGCGGCG 61.080 57.895 22.36 22.36 0.00 6.46
562 568 1.598430 CGCAACCCACTTTGGTAAACG 60.598 52.381 0.00 0.00 37.76 3.60
582 590 1.398390 GCTTTTGTCTCCACCTATGCG 59.602 52.381 0.00 0.00 0.00 4.73
710 730 2.240493 ATTGAAATCTCGTAGCCCGG 57.760 50.000 0.00 0.00 37.11 5.73
715 735 1.038280 AATCTCGTAGCCCGGTTAGG 58.962 55.000 0.00 0.00 40.63 2.69
721 741 3.030291 TCGTAGCCCGGTTAGGAAATAA 58.970 45.455 0.00 0.00 45.00 1.40
751 771 1.856265 GAGGTCCTGGCACGCAAAAG 61.856 60.000 0.00 0.00 0.00 2.27
752 772 2.193536 GGTCCTGGCACGCAAAAGT 61.194 57.895 0.00 0.00 0.00 2.66
847 876 3.314331 CACCAGAGACCAGCCCGT 61.314 66.667 0.00 0.00 0.00 5.28
1272 1340 0.248661 CGCAGTACATCCTCGAGGTG 60.249 60.000 30.17 26.51 36.34 4.00
1275 1343 0.324368 AGTACATCCTCGAGGTGCCA 60.324 55.000 30.17 12.38 29.94 4.92
1294 1383 0.842467 AGCACCCTCCCAGCTTTACT 60.842 55.000 0.00 0.00 34.37 2.24
1296 1385 1.950954 GCACCCTCCCAGCTTTACTTC 60.951 57.143 0.00 0.00 0.00 3.01
1297 1386 0.992695 ACCCTCCCAGCTTTACTTCC 59.007 55.000 0.00 0.00 0.00 3.46
1302 1391 0.462047 CCCAGCTTTACTTCCGCGAT 60.462 55.000 8.23 0.00 0.00 4.58
1303 1392 1.202486 CCCAGCTTTACTTCCGCGATA 60.202 52.381 8.23 0.00 0.00 2.92
1305 1394 1.859080 CAGCTTTACTTCCGCGATACC 59.141 52.381 8.23 0.00 0.00 2.73
1306 1395 1.479323 AGCTTTACTTCCGCGATACCA 59.521 47.619 8.23 0.00 0.00 3.25
1308 1397 1.850441 CTTTACTTCCGCGATACCACG 59.150 52.381 8.23 0.00 0.00 4.94
1325 1640 0.527565 ACGCTTGGAATTGGACATGC 59.472 50.000 0.00 0.00 35.25 4.06
1331 1646 1.340502 TGGAATTGGACATGCGCCTTA 60.341 47.619 4.18 0.00 0.00 2.69
1333 1648 2.017049 GAATTGGACATGCGCCTTAGT 58.983 47.619 4.18 0.00 0.00 2.24
1345 1660 3.244078 TGCGCCTTAGTAGGATTGTATGG 60.244 47.826 4.18 0.00 45.05 2.74
1353 1668 4.965814 AGTAGGATTGTATGGAGCATGTG 58.034 43.478 0.00 0.00 0.00 3.21
1364 1679 2.229792 GGAGCATGTGTGAACTTGGAA 58.770 47.619 0.00 0.00 0.00 3.53
1367 1682 2.029649 AGCATGTGTGAACTTGGAATGC 60.030 45.455 0.00 0.00 39.32 3.56
1373 1688 3.683587 GAACTTGGAATGCGGCGGC 62.684 63.158 9.78 9.68 40.52 6.53
1385 1700 2.671963 GGCGGCGGGAGTTTCTTT 60.672 61.111 9.78 0.00 0.00 2.52
1406 1731 1.072806 AGCTGCTCATTTGGTGTCTCA 59.927 47.619 0.00 0.00 0.00 3.27
1573 2009 1.791555 GCCTGTTCATTGTCGCATTCG 60.792 52.381 0.00 0.00 0.00 3.34
1587 2023 1.668628 GCATTCGCCATTTGTTTCCGT 60.669 47.619 0.00 0.00 0.00 4.69
1608 2044 5.009210 CCGTTTTAATTCCTCCACAGTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
1613 2049 7.739498 TTAATTCCTCCACAGTTTCAAGTAC 57.261 36.000 0.00 0.00 0.00 2.73
1614 2050 3.380479 TCCTCCACAGTTTCAAGTACG 57.620 47.619 0.00 0.00 0.00 3.67
1615 2051 2.696707 TCCTCCACAGTTTCAAGTACGT 59.303 45.455 0.00 0.00 0.00 3.57
1616 2052 3.890756 TCCTCCACAGTTTCAAGTACGTA 59.109 43.478 0.00 0.00 0.00 3.57
1656 2092 1.036707 GGGCTCGAGATAGTCTGCTT 58.963 55.000 18.75 0.00 0.00 3.91
1657 2093 1.269517 GGGCTCGAGATAGTCTGCTTG 60.270 57.143 18.75 0.00 0.00 4.01
1660 2096 3.304391 GGCTCGAGATAGTCTGCTTGTAG 60.304 52.174 18.75 0.00 0.00 2.74
1685 2121 1.594293 GTGTACCCCATGGCGATCG 60.594 63.158 11.69 11.69 33.59 3.69
1694 2136 3.432186 CCCCATGGCGATCGATAATATGT 60.432 47.826 21.57 0.00 0.00 2.29
1700 2142 5.538118 TGGCGATCGATAATATGTCTGTTT 58.462 37.500 21.57 0.00 0.00 2.83
1719 2161 3.936902 TTTGTACTTGAGTGCGTGAAC 57.063 42.857 0.00 0.00 33.15 3.18
1736 2178 0.949105 AACGGGCTTTCTACGCAGTG 60.949 55.000 0.00 0.00 45.73 3.66
1754 2202 2.438021 AGTGCTTGTTCCTGGTAGTTGA 59.562 45.455 0.00 0.00 0.00 3.18
1767 2215 3.820467 TGGTAGTTGAAGTTGCCTGAATG 59.180 43.478 0.00 0.00 0.00 2.67
1768 2216 3.821033 GGTAGTTGAAGTTGCCTGAATGT 59.179 43.478 0.00 0.00 0.00 2.71
1769 2217 3.996150 AGTTGAAGTTGCCTGAATGTG 57.004 42.857 0.00 0.00 0.00 3.21
1770 2218 2.035066 AGTTGAAGTTGCCTGAATGTGC 59.965 45.455 0.00 0.00 0.00 4.57
1773 2221 2.694628 TGAAGTTGCCTGAATGTGCTTT 59.305 40.909 0.00 0.00 0.00 3.51
1774 2222 3.888323 TGAAGTTGCCTGAATGTGCTTTA 59.112 39.130 0.00 0.00 0.00 1.85
1775 2223 4.523943 TGAAGTTGCCTGAATGTGCTTTAT 59.476 37.500 0.00 0.00 0.00 1.40
1788 2238 1.892474 TGCTTTATTTGGCTGGGTGAC 59.108 47.619 0.00 0.00 0.00 3.67
1830 2280 2.035066 GCATGGTGGAGATGTAAATGCC 59.965 50.000 0.00 0.00 34.32 4.40
1960 2410 7.681259 TTATATGGCTATCAGGTCTGCATAT 57.319 36.000 0.00 10.54 31.27 1.78
1964 2414 4.287845 TGGCTATCAGGTCTGCATATTGAT 59.712 41.667 0.00 0.00 33.44 2.57
2005 2456 1.363744 TGTTTTGCCTTTGCGTTTGG 58.636 45.000 0.00 0.00 41.78 3.28
2457 3270 8.534333 TGTAACATATGTCTGAACAGAACTTC 57.466 34.615 9.23 0.00 39.20 3.01
2623 3440 4.361451 AAATTTATTCACTGCTCTGCCG 57.639 40.909 0.00 0.00 0.00 5.69
2624 3441 2.472695 TTTATTCACTGCTCTGCCGT 57.527 45.000 0.00 0.00 0.00 5.68
2872 3718 3.313012 TCTTGTGAGTAACATGGACCG 57.687 47.619 0.00 0.00 38.99 4.79
3117 3963 3.388308 TGTTGGCGAATTTGTTGAATGG 58.612 40.909 0.00 0.00 0.00 3.16
3130 3976 3.132925 GTTGAATGGTGCACATGCTTTT 58.867 40.909 20.43 2.11 40.44 2.27
3131 3977 2.756829 TGAATGGTGCACATGCTTTTG 58.243 42.857 20.43 0.00 40.44 2.44
3273 4119 5.753438 ACTTGTATGTACATAGATGCAACCG 59.247 40.000 15.93 8.23 35.89 4.44
3285 4131 3.441572 AGATGCAACCGAGGAGAAAAATG 59.558 43.478 0.00 0.00 0.00 2.32
3409 4255 1.135199 GGTTGGCTGATTGCACTCATG 60.135 52.381 7.26 3.58 45.15 3.07
3557 4405 5.127519 TGCTGATATTTGAACTGGGGAAATG 59.872 40.000 0.00 0.00 0.00 2.32
3558 4406 5.127682 GCTGATATTTGAACTGGGGAAATGT 59.872 40.000 0.00 0.00 0.00 2.71
3559 4407 6.321181 GCTGATATTTGAACTGGGGAAATGTA 59.679 38.462 0.00 0.00 0.00 2.29
3601 4449 6.910995 AGAATCTGAAGACTTGATTTGCTTG 58.089 36.000 0.00 0.00 31.49 4.01
3605 4453 7.984422 TCTGAAGACTTGATTTGCTTGATTA 57.016 32.000 0.00 0.00 0.00 1.75
3951 4800 6.368779 AGGTACTGAAGCATTTGGTTAGTA 57.631 37.500 0.00 2.53 37.18 1.82
3956 4805 4.585879 TGAAGCATTTGGTTAGTACTCCC 58.414 43.478 0.00 1.04 35.69 4.30
3957 4806 4.288626 TGAAGCATTTGGTTAGTACTCCCT 59.711 41.667 0.00 0.00 35.69 4.20
3958 4807 4.489306 AGCATTTGGTTAGTACTCCCTC 57.511 45.455 0.00 0.00 0.00 4.30
3959 4808 4.104831 AGCATTTGGTTAGTACTCCCTCT 58.895 43.478 0.00 0.00 0.00 3.69
3971 4820 6.051179 AGTACTCCCTCTGTTCCAAAATAC 57.949 41.667 0.00 0.00 0.00 1.89
3981 4830 4.200874 TGTTCCAAAATACTTGTCGTGGT 58.799 39.130 0.00 0.00 0.00 4.16
3993 4842 4.809426 ACTTGTCGTGGTTTTAGTTCTGAG 59.191 41.667 0.00 0.00 0.00 3.35
4004 4853 5.917541 TTTAGTTCTGAGCTAAAACCACG 57.082 39.130 19.99 0.00 36.03 4.94
4005 4854 2.767505 AGTTCTGAGCTAAAACCACGG 58.232 47.619 0.00 0.00 0.00 4.94
4018 4867 2.279935 ACCACGGCAAGTATTTTGGA 57.720 45.000 0.00 0.00 0.00 3.53
4020 4869 3.161866 ACCACGGCAAGTATTTTGGAAT 58.838 40.909 0.00 0.00 0.00 3.01
4052 4901 9.827411 GAGTAGTTATGAAAAAGTTGAATCCAC 57.173 33.333 0.00 0.00 0.00 4.02
4064 4913 1.894466 TGAATCCACCAAGCATGTTGG 59.106 47.619 19.38 19.38 44.91 3.77
4338 5247 6.925610 TCATTAAGCAACACCACTATGATC 57.074 37.500 0.00 0.00 0.00 2.92
4487 5402 8.778358 CCTTTATGGTCATTTGCTATTCTAGAC 58.222 37.037 0.00 0.00 0.00 2.59
4673 5588 8.939201 ATACAGTGATGAATTAGTTGTCTCTG 57.061 34.615 0.00 0.00 36.81 3.35
4814 5729 2.443255 CTGCCCCTGGGTATCTAATTGT 59.557 50.000 12.71 0.00 37.65 2.71
4876 5792 8.822652 CTACATGTGATCAAATGTAGCTATCA 57.177 34.615 36.35 19.16 45.44 2.15
4877 5793 9.264719 CTACATGTGATCAAATGTAGCTATCAA 57.735 33.333 36.35 18.58 45.44 2.57
4878 5794 7.923888 ACATGTGATCAAATGTAGCTATCAAC 58.076 34.615 26.87 0.00 35.28 3.18
4879 5795 7.772292 ACATGTGATCAAATGTAGCTATCAACT 59.228 33.333 26.87 0.97 35.28 3.16
4880 5796 8.618677 CATGTGATCAAATGTAGCTATCAACTT 58.381 33.333 16.62 0.00 0.00 2.66
4881 5797 9.836864 ATGTGATCAAATGTAGCTATCAACTTA 57.163 29.630 0.00 0.00 0.00 2.24
4882 5798 9.836864 TGTGATCAAATGTAGCTATCAACTTAT 57.163 29.630 0.00 0.00 0.00 1.73
4886 5802 8.662781 TCAAATGTAGCTATCAACTTATCACC 57.337 34.615 0.00 0.00 0.00 4.02
4887 5803 8.486210 TCAAATGTAGCTATCAACTTATCACCT 58.514 33.333 0.00 0.00 0.00 4.00
4888 5804 8.768955 CAAATGTAGCTATCAACTTATCACCTC 58.231 37.037 0.00 0.00 0.00 3.85
4889 5805 7.847711 ATGTAGCTATCAACTTATCACCTCT 57.152 36.000 0.00 0.00 0.00 3.69
4890 5806 7.661536 TGTAGCTATCAACTTATCACCTCTT 57.338 36.000 0.00 0.00 0.00 2.85
4891 5807 7.492524 TGTAGCTATCAACTTATCACCTCTTG 58.507 38.462 0.00 0.00 0.00 3.02
4892 5808 5.363939 AGCTATCAACTTATCACCTCTTGC 58.636 41.667 0.00 0.00 0.00 4.01
4893 5809 4.513318 GCTATCAACTTATCACCTCTTGCC 59.487 45.833 0.00 0.00 0.00 4.52
4894 5810 4.574674 ATCAACTTATCACCTCTTGCCA 57.425 40.909 0.00 0.00 0.00 4.92
4895 5811 4.574674 TCAACTTATCACCTCTTGCCAT 57.425 40.909 0.00 0.00 0.00 4.40
4896 5812 4.922206 TCAACTTATCACCTCTTGCCATT 58.078 39.130 0.00 0.00 0.00 3.16
4897 5813 4.943705 TCAACTTATCACCTCTTGCCATTC 59.056 41.667 0.00 0.00 0.00 2.67
4898 5814 4.851639 ACTTATCACCTCTTGCCATTCT 57.148 40.909 0.00 0.00 0.00 2.40
4899 5815 4.521146 ACTTATCACCTCTTGCCATTCTG 58.479 43.478 0.00 0.00 0.00 3.02
4900 5816 1.760192 ATCACCTCTTGCCATTCTGC 58.240 50.000 0.00 0.00 0.00 4.26
4901 5817 0.674581 TCACCTCTTGCCATTCTGCG 60.675 55.000 0.00 0.00 0.00 5.18
4902 5818 0.957395 CACCTCTTGCCATTCTGCGT 60.957 55.000 0.00 0.00 0.00 5.24
4903 5819 0.250901 ACCTCTTGCCATTCTGCGTT 60.251 50.000 0.00 0.00 0.00 4.84
4904 5820 0.883833 CCTCTTGCCATTCTGCGTTT 59.116 50.000 0.00 0.00 0.00 3.60
4905 5821 1.401931 CCTCTTGCCATTCTGCGTTTG 60.402 52.381 0.00 0.00 0.00 2.93
4906 5822 1.536766 CTCTTGCCATTCTGCGTTTGA 59.463 47.619 0.00 0.00 0.00 2.69
4907 5823 1.266718 TCTTGCCATTCTGCGTTTGAC 59.733 47.619 0.00 0.00 0.00 3.18
4908 5824 0.313672 TTGCCATTCTGCGTTTGACC 59.686 50.000 0.00 0.00 0.00 4.02
4909 5825 0.537143 TGCCATTCTGCGTTTGACCT 60.537 50.000 0.00 0.00 0.00 3.85
4910 5826 0.109597 GCCATTCTGCGTTTGACCTG 60.110 55.000 0.00 0.00 0.00 4.00
4911 5827 0.523072 CCATTCTGCGTTTGACCTGG 59.477 55.000 0.00 0.00 0.00 4.45
4912 5828 0.523072 CATTCTGCGTTTGACCTGGG 59.477 55.000 0.00 0.00 0.00 4.45
4913 5829 0.400213 ATTCTGCGTTTGACCTGGGA 59.600 50.000 0.00 0.00 0.00 4.37
4914 5830 0.400213 TTCTGCGTTTGACCTGGGAT 59.600 50.000 0.00 0.00 0.00 3.85
4915 5831 0.321564 TCTGCGTTTGACCTGGGATG 60.322 55.000 0.00 0.00 0.00 3.51
4916 5832 0.606401 CTGCGTTTGACCTGGGATGT 60.606 55.000 0.00 0.00 0.00 3.06
4917 5833 0.888736 TGCGTTTGACCTGGGATGTG 60.889 55.000 0.00 0.00 0.00 3.21
4918 5834 1.875963 CGTTTGACCTGGGATGTGC 59.124 57.895 0.00 0.00 0.00 4.57
4919 5835 0.888736 CGTTTGACCTGGGATGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
4920 5836 1.549203 GTTTGACCTGGGATGTGCAT 58.451 50.000 0.00 0.00 0.00 3.96
4921 5837 1.895131 GTTTGACCTGGGATGTGCATT 59.105 47.619 0.00 0.00 0.00 3.56
4922 5838 3.088532 GTTTGACCTGGGATGTGCATTA 58.911 45.455 0.00 0.00 0.00 1.90
4923 5839 2.715749 TGACCTGGGATGTGCATTAG 57.284 50.000 0.00 0.00 0.00 1.73
4924 5840 1.915489 TGACCTGGGATGTGCATTAGT 59.085 47.619 0.00 0.00 0.00 2.24
4925 5841 2.308570 TGACCTGGGATGTGCATTAGTT 59.691 45.455 0.00 0.00 0.00 2.24
4926 5842 3.245229 TGACCTGGGATGTGCATTAGTTT 60.245 43.478 0.00 0.00 0.00 2.66
4927 5843 3.356290 ACCTGGGATGTGCATTAGTTTC 58.644 45.455 0.00 0.00 0.00 2.78
4928 5844 3.010584 ACCTGGGATGTGCATTAGTTTCT 59.989 43.478 0.00 0.00 0.00 2.52
4929 5845 4.019174 CCTGGGATGTGCATTAGTTTCTT 58.981 43.478 0.00 0.00 0.00 2.52
4930 5846 4.463891 CCTGGGATGTGCATTAGTTTCTTT 59.536 41.667 0.00 0.00 0.00 2.52
4931 5847 5.393461 CCTGGGATGTGCATTAGTTTCTTTC 60.393 44.000 0.00 0.00 0.00 2.62
4932 5848 5.324409 TGGGATGTGCATTAGTTTCTTTCT 58.676 37.500 0.00 0.00 0.00 2.52
4933 5849 5.774690 TGGGATGTGCATTAGTTTCTTTCTT 59.225 36.000 0.00 0.00 0.00 2.52
4934 5850 6.095377 GGGATGTGCATTAGTTTCTTTCTTG 58.905 40.000 0.00 0.00 0.00 3.02
4935 5851 6.294731 GGGATGTGCATTAGTTTCTTTCTTGT 60.295 38.462 0.00 0.00 0.00 3.16
4936 5852 6.583806 GGATGTGCATTAGTTTCTTTCTTGTG 59.416 38.462 0.00 0.00 0.00 3.33
4937 5853 5.280945 TGTGCATTAGTTTCTTTCTTGTGC 58.719 37.500 0.00 0.00 0.00 4.57
4938 5854 5.067674 TGTGCATTAGTTTCTTTCTTGTGCT 59.932 36.000 0.00 0.00 0.00 4.40
4939 5855 5.626955 GTGCATTAGTTTCTTTCTTGTGCTC 59.373 40.000 0.00 0.00 0.00 4.26
4940 5856 5.157067 GCATTAGTTTCTTTCTTGTGCTCC 58.843 41.667 0.00 0.00 0.00 4.70
4941 5857 5.385617 CATTAGTTTCTTTCTTGTGCTCCG 58.614 41.667 0.00 0.00 0.00 4.63
4942 5858 2.919228 AGTTTCTTTCTTGTGCTCCGT 58.081 42.857 0.00 0.00 0.00 4.69
4943 5859 4.067972 AGTTTCTTTCTTGTGCTCCGTA 57.932 40.909 0.00 0.00 0.00 4.02
4944 5860 4.448210 AGTTTCTTTCTTGTGCTCCGTAA 58.552 39.130 0.00 0.00 0.00 3.18
4945 5861 4.272748 AGTTTCTTTCTTGTGCTCCGTAAC 59.727 41.667 0.00 0.00 0.00 2.50
4946 5862 2.762745 TCTTTCTTGTGCTCCGTAACC 58.237 47.619 0.00 0.00 0.00 2.85
4947 5863 2.367567 TCTTTCTTGTGCTCCGTAACCT 59.632 45.455 0.00 0.00 0.00 3.50
4948 5864 3.575256 TCTTTCTTGTGCTCCGTAACCTA 59.425 43.478 0.00 0.00 0.00 3.08
4949 5865 3.308438 TTCTTGTGCTCCGTAACCTAC 57.692 47.619 0.00 0.00 0.00 3.18
4950 5866 1.547372 TCTTGTGCTCCGTAACCTACC 59.453 52.381 0.00 0.00 0.00 3.18
4951 5867 1.549170 CTTGTGCTCCGTAACCTACCT 59.451 52.381 0.00 0.00 0.00 3.08
4952 5868 1.180029 TGTGCTCCGTAACCTACCTC 58.820 55.000 0.00 0.00 0.00 3.85
4953 5869 0.459078 GTGCTCCGTAACCTACCTCC 59.541 60.000 0.00 0.00 0.00 4.30
4954 5870 0.333993 TGCTCCGTAACCTACCTCCT 59.666 55.000 0.00 0.00 0.00 3.69
4955 5871 1.565759 TGCTCCGTAACCTACCTCCTA 59.434 52.381 0.00 0.00 0.00 2.94
4956 5872 2.228925 GCTCCGTAACCTACCTCCTAG 58.771 57.143 0.00 0.00 0.00 3.02
4958 5874 2.441001 CTCCGTAACCTACCTCCTAGGA 59.559 54.545 11.98 11.98 44.88 2.94
4959 5875 2.441001 TCCGTAACCTACCTCCTAGGAG 59.559 54.545 29.27 29.27 44.88 3.69
4972 5888 5.677319 CTCCTAGGAGGATTGTAACAACA 57.323 43.478 28.68 0.00 44.81 3.33
4973 5889 6.049955 CTCCTAGGAGGATTGTAACAACAA 57.950 41.667 28.68 0.00 44.81 2.83
4974 5890 6.442541 TCCTAGGAGGATTGTAACAACAAA 57.557 37.500 7.62 0.00 40.06 2.83
4975 5891 6.235664 TCCTAGGAGGATTGTAACAACAAAC 58.764 40.000 7.62 0.00 40.06 2.93
4976 5892 6.043938 TCCTAGGAGGATTGTAACAACAAACT 59.956 38.462 7.62 0.00 40.06 2.66
4977 5893 6.371825 CCTAGGAGGATTGTAACAACAAACTC 59.628 42.308 1.05 13.51 37.67 3.01
4978 5894 5.941788 AGGAGGATTGTAACAACAAACTCT 58.058 37.500 17.87 7.95 37.59 3.24
4979 5895 5.998363 AGGAGGATTGTAACAACAAACTCTC 59.002 40.000 17.87 13.43 37.59 3.20
4980 5896 5.998363 GGAGGATTGTAACAACAAACTCTCT 59.002 40.000 17.87 5.25 37.59 3.10
4981 5897 6.147985 GGAGGATTGTAACAACAAACTCTCTC 59.852 42.308 17.87 10.80 37.59 3.20
4982 5898 6.831976 AGGATTGTAACAACAAACTCTCTCT 58.168 36.000 0.00 0.00 32.94 3.10
4983 5899 7.283329 AGGATTGTAACAACAAACTCTCTCTT 58.717 34.615 0.00 0.00 32.94 2.85
4984 5900 7.442666 AGGATTGTAACAACAAACTCTCTCTTC 59.557 37.037 0.00 0.00 32.94 2.87
4985 5901 7.442666 GGATTGTAACAACAAACTCTCTCTTCT 59.557 37.037 0.00 0.00 32.94 2.85
4986 5902 7.772332 TTGTAACAACAAACTCTCTCTTCTC 57.228 36.000 0.00 0.00 0.00 2.87
4987 5903 6.873997 TGTAACAACAAACTCTCTCTTCTCA 58.126 36.000 0.00 0.00 0.00 3.27
4988 5904 7.327975 TGTAACAACAAACTCTCTCTTCTCAA 58.672 34.615 0.00 0.00 0.00 3.02
4989 5905 7.987458 TGTAACAACAAACTCTCTCTTCTCAAT 59.013 33.333 0.00 0.00 0.00 2.57
4990 5906 6.857777 ACAACAAACTCTCTCTTCTCAATG 57.142 37.500 0.00 0.00 0.00 2.82
4991 5907 5.238214 ACAACAAACTCTCTCTTCTCAATGC 59.762 40.000 0.00 0.00 0.00 3.56
4992 5908 4.965814 ACAAACTCTCTCTTCTCAATGCA 58.034 39.130 0.00 0.00 0.00 3.96
4993 5909 5.371526 ACAAACTCTCTCTTCTCAATGCAA 58.628 37.500 0.00 0.00 0.00 4.08
4994 5910 6.002704 ACAAACTCTCTCTTCTCAATGCAAT 58.997 36.000 0.00 0.00 0.00 3.56
4995 5911 6.072618 ACAAACTCTCTCTTCTCAATGCAATG 60.073 38.462 0.00 0.00 0.00 2.82
4996 5912 5.417754 ACTCTCTCTTCTCAATGCAATGA 57.582 39.130 4.04 4.04 0.00 2.57
4997 5913 5.802465 ACTCTCTCTTCTCAATGCAATGAA 58.198 37.500 5.85 0.46 0.00 2.57
4998 5914 6.236409 ACTCTCTCTTCTCAATGCAATGAAA 58.764 36.000 5.85 3.10 0.00 2.69
4999 5915 6.149142 ACTCTCTCTTCTCAATGCAATGAAAC 59.851 38.462 5.85 0.00 0.00 2.78
5000 5916 5.999600 TCTCTCTTCTCAATGCAATGAAACA 59.000 36.000 5.85 0.00 0.00 2.83
5001 5917 6.005583 TCTCTTCTCAATGCAATGAAACAC 57.994 37.500 5.85 0.00 0.00 3.32
5002 5918 5.532032 TCTCTTCTCAATGCAATGAAACACA 59.468 36.000 5.85 0.00 0.00 3.72
5003 5919 6.039605 TCTCTTCTCAATGCAATGAAACACAA 59.960 34.615 5.85 0.00 0.00 3.33
5004 5920 6.571605 TCTTCTCAATGCAATGAAACACAAA 58.428 32.000 5.85 0.00 0.00 2.83
5005 5921 6.698329 TCTTCTCAATGCAATGAAACACAAAG 59.302 34.615 5.85 3.82 0.00 2.77
5006 5922 5.291178 TCTCAATGCAATGAAACACAAAGG 58.709 37.500 5.85 0.00 0.00 3.11
5007 5923 5.021033 TCAATGCAATGAAACACAAAGGT 57.979 34.783 0.85 0.00 0.00 3.50
5008 5924 5.049167 TCAATGCAATGAAACACAAAGGTC 58.951 37.500 0.85 0.00 0.00 3.85
5009 5925 4.942761 ATGCAATGAAACACAAAGGTCT 57.057 36.364 0.00 0.00 0.00 3.85
5010 5926 4.305989 TGCAATGAAACACAAAGGTCTC 57.694 40.909 0.00 0.00 0.00 3.36
5011 5927 3.953612 TGCAATGAAACACAAAGGTCTCT 59.046 39.130 0.00 0.00 0.00 3.10
5012 5928 4.402155 TGCAATGAAACACAAAGGTCTCTT 59.598 37.500 0.00 0.00 34.07 2.85
5013 5929 4.741676 GCAATGAAACACAAAGGTCTCTTG 59.258 41.667 0.00 0.00 32.75 3.02
5014 5930 4.574599 ATGAAACACAAAGGTCTCTTGC 57.425 40.909 0.00 0.00 32.75 4.01
5015 5931 2.354510 TGAAACACAAAGGTCTCTTGCG 59.645 45.455 0.00 0.00 32.75 4.85
5016 5932 2.038387 AACACAAAGGTCTCTTGCGT 57.962 45.000 0.00 0.00 32.75 5.24
5017 5933 2.038387 ACACAAAGGTCTCTTGCGTT 57.962 45.000 0.00 0.00 32.75 4.84
5018 5934 2.365582 ACACAAAGGTCTCTTGCGTTT 58.634 42.857 0.00 0.00 32.75 3.60
5019 5935 2.752903 ACACAAAGGTCTCTTGCGTTTT 59.247 40.909 0.00 0.00 32.75 2.43
5020 5936 3.181500 ACACAAAGGTCTCTTGCGTTTTC 60.181 43.478 0.00 0.00 32.75 2.29
5021 5937 3.065371 CACAAAGGTCTCTTGCGTTTTCT 59.935 43.478 0.00 0.00 32.75 2.52
5022 5938 3.312697 ACAAAGGTCTCTTGCGTTTTCTC 59.687 43.478 0.00 0.00 32.75 2.87
5023 5939 1.784525 AGGTCTCTTGCGTTTTCTCG 58.215 50.000 0.00 0.00 0.00 4.04
5024 5940 1.340248 AGGTCTCTTGCGTTTTCTCGA 59.660 47.619 0.00 0.00 0.00 4.04
5025 5941 2.132762 GGTCTCTTGCGTTTTCTCGAA 58.867 47.619 0.00 0.00 0.00 3.71
5026 5942 2.542595 GGTCTCTTGCGTTTTCTCGAAA 59.457 45.455 0.00 0.00 0.00 3.46
5027 5943 3.001939 GGTCTCTTGCGTTTTCTCGAAAA 59.998 43.478 0.93 0.93 37.90 2.29
5028 5944 4.495184 GGTCTCTTGCGTTTTCTCGAAAAA 60.495 41.667 6.41 0.00 41.37 1.94
5029 5945 4.666618 GTCTCTTGCGTTTTCTCGAAAAAG 59.333 41.667 11.86 11.86 41.37 2.27
5030 5946 4.569162 TCTCTTGCGTTTTCTCGAAAAAGA 59.431 37.500 17.92 11.16 41.37 2.52
5031 5947 5.064198 TCTCTTGCGTTTTCTCGAAAAAGAA 59.936 36.000 17.92 8.07 41.37 2.52
5032 5948 5.632959 TCTTGCGTTTTCTCGAAAAAGAAA 58.367 33.333 17.92 13.84 42.12 2.52
5091 6007 9.793252 GACAGTTTATGTTGCTTGATGAATATT 57.207 29.630 0.00 0.00 44.17 1.28
5151 6067 2.892784 AGTAACGCTATGAAGAGCCC 57.107 50.000 0.00 0.00 39.43 5.19
5375 6291 2.961741 TGTGGCTTTTCCTTGCAACATA 59.038 40.909 0.00 0.00 38.10 2.29
5408 6324 6.902224 TGTTCCGTATGATTCATTACTGTG 57.098 37.500 4.14 0.00 0.00 3.66
5457 6373 2.503895 CTTCTCCAGCATCCTTTGGT 57.496 50.000 0.00 0.00 35.89 3.67
5658 6576 7.681939 TTTATTCTAAAATCGTGAAGCCACT 57.318 32.000 0.00 0.00 41.06 4.00
5661 6579 3.994392 TCTAAAATCGTGAAGCCACTGAC 59.006 43.478 0.00 0.00 41.06 3.51
5702 6620 4.084745 GCACAAGCACAATCTTCAACATTG 60.085 41.667 0.00 0.00 41.58 2.82
5736 6654 5.629079 ACTAAACTAAGGCATGAACTTGC 57.371 39.130 11.89 4.46 42.01 4.01
5758 6676 6.550843 TGCATAAAACATCCTGAACATAACG 58.449 36.000 0.00 0.00 0.00 3.18
5776 6694 1.953686 ACGTTATTTGTGCCTTGCTGT 59.046 42.857 0.00 0.00 0.00 4.40
5806 6726 2.680312 TACGGAGAGTACGCTACTGT 57.320 50.000 7.29 8.97 39.59 3.55
5906 6826 1.806542 GATTGGCATGTCGTTGTCAGT 59.193 47.619 0.00 0.00 31.87 3.41
5928 6848 8.146412 TCAGTTCATTCATGAGTATATGACCTG 58.854 37.037 19.18 19.18 38.28 4.00
5930 6850 8.489489 AGTTCATTCATGAGTATATGACCTGTT 58.511 33.333 7.21 0.00 36.84 3.16
6111 7096 7.615582 TTTATGAAGCTATCTGTGAGGTTTG 57.384 36.000 0.00 0.00 34.87 2.93
6132 7117 0.596082 GTGTGGGACCATGTTTTCCG 59.404 55.000 0.00 0.00 32.00 4.30
6151 7136 2.225963 CCGTCCAGTAGTTATAGCCTCG 59.774 54.545 0.00 0.00 0.00 4.63
6202 7187 6.763135 TCTGTACCATGTATTCTTCTTCATGC 59.237 38.462 0.00 0.00 37.09 4.06
6230 7330 6.620877 TTTCTCTCCCTTGTAGATAGCAAA 57.379 37.500 0.00 0.00 0.00 3.68
6393 7493 3.699484 CGGCTCGAGCATGCATCG 61.699 66.667 36.27 25.26 44.36 3.84
6456 7556 0.904865 TCTCACAGAATGGCGAGGGT 60.905 55.000 0.00 0.00 43.62 4.34
6705 7807 0.456824 ATCGTACACGCTCACTGCTG 60.457 55.000 0.00 0.00 40.11 4.41
6947 8086 0.319641 GGATCGGCGGGAGTACAATC 60.320 60.000 7.21 0.00 0.00 2.67
7051 8192 0.108396 TCACTGTGGCTTAAGCTGCA 59.892 50.000 25.88 21.49 41.70 4.41
7080 8224 6.094719 TCTTCATTTCTCATTCATTTTGCGG 58.905 36.000 0.00 0.00 0.00 5.69
7125 8269 2.279851 GGTTTTGCGGGTGTTGCC 60.280 61.111 0.00 0.00 0.00 4.52
7321 10290 8.862325 TCTTTTGTCTTATCATCCTTTGCTTA 57.138 30.769 0.00 0.00 0.00 3.09
7349 10318 6.314784 TCAGATATATGTTCACGCGACTATG 58.685 40.000 15.93 0.00 0.00 2.23
7352 10321 7.114953 CAGATATATGTTCACGCGACTATGTTT 59.885 37.037 15.93 0.00 0.00 2.83
7395 10364 3.067742 ACGCCGAGTTATGTAATAGCTGT 59.932 43.478 0.00 0.00 40.66 4.40
7396 10365 3.425525 CGCCGAGTTATGTAATAGCTGTG 59.574 47.826 0.00 0.00 40.66 3.66
7414 10383 1.068434 GTGTTGCCTGCCAAAGCTAAA 59.932 47.619 0.00 0.00 40.80 1.85
7428 10397 0.794473 GCTAAAAGACCGTCCAACCG 59.206 55.000 0.00 0.00 0.00 4.44
7445 10414 3.329929 ACCGAAAGAGGGATAACACAC 57.670 47.619 0.00 0.00 35.02 3.82
7446 10415 2.635915 ACCGAAAGAGGGATAACACACA 59.364 45.455 0.00 0.00 35.02 3.72
7450 10419 5.009210 CCGAAAGAGGGATAACACACAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
7474 10443 1.549203 ATCAGCCAGCCGAACATTTT 58.451 45.000 0.00 0.00 0.00 1.82
7477 10446 1.006337 GCCAGCCGAACATTTTGCA 60.006 52.632 0.00 0.00 0.00 4.08
7491 10460 3.938109 TTGCACCGCAATGTAGGTA 57.062 47.368 0.00 0.00 43.99 3.08
7538 10508 9.559958 AAATGTTTCTAGATTTTATCGCTGTTG 57.440 29.630 0.00 0.00 0.00 3.33
7550 10522 6.817765 TTATCGCTGTTGGAGAAGAAAAAT 57.182 33.333 0.00 0.00 0.00 1.82
7558 10530 7.573096 GCTGTTGGAGAAGAAAAATAATGTCGA 60.573 37.037 0.00 0.00 0.00 4.20
7559 10531 7.806690 TGTTGGAGAAGAAAAATAATGTCGAG 58.193 34.615 0.00 0.00 0.00 4.04
7591 10563 5.986501 ACACCAAGCCGGATTTAAAATAA 57.013 34.783 5.05 0.00 38.63 1.40
7592 10564 6.347859 ACACCAAGCCGGATTTAAAATAAA 57.652 33.333 5.05 0.00 38.63 1.40
7594 10566 8.068892 ACACCAAGCCGGATTTAAAATAAATA 57.931 30.769 5.05 0.00 38.63 1.40
7595 10567 8.700973 ACACCAAGCCGGATTTAAAATAAATAT 58.299 29.630 5.05 0.00 38.63 1.28
7596 10568 9.541143 CACCAAGCCGGATTTAAAATAAATATT 57.459 29.630 5.05 0.00 38.63 1.28
7597 10569 9.758651 ACCAAGCCGGATTTAAAATAAATATTC 57.241 29.630 5.05 0.00 38.63 1.75
7641 10613 8.621532 ACTCTTGCATTGTGAAATTAGTTCTA 57.378 30.769 0.00 0.00 37.13 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.612247 AAGCTAGTGGGCCAGCGTG 62.612 63.158 6.40 0.00 42.74 5.34
13 14 3.322466 AAGCTAGTGGGCCAGCGT 61.322 61.111 6.40 1.84 42.74 5.07
14 15 2.599645 ATCAAGCTAGTGGGCCAGCG 62.600 60.000 6.40 0.00 42.74 5.18
15 16 1.099879 CATCAAGCTAGTGGGCCAGC 61.100 60.000 6.40 7.45 38.09 4.85
16 17 0.465097 CCATCAAGCTAGTGGGCCAG 60.465 60.000 6.40 0.00 0.00 4.85
17 18 1.609239 CCATCAAGCTAGTGGGCCA 59.391 57.895 0.00 0.00 0.00 5.36
18 19 1.825622 GCCATCAAGCTAGTGGGCC 60.826 63.158 12.32 0.00 35.42 5.80
19 20 3.833304 GCCATCAAGCTAGTGGGC 58.167 61.111 12.32 8.46 33.58 5.36
20 21 0.465097 CAGGCCATCAAGCTAGTGGG 60.465 60.000 5.01 2.72 33.58 4.61
21 22 1.099879 GCAGGCCATCAAGCTAGTGG 61.100 60.000 5.01 7.41 36.09 4.00
22 23 0.107312 AGCAGGCCATCAAGCTAGTG 60.107 55.000 5.01 0.00 35.19 2.74
23 24 1.500474 TAGCAGGCCATCAAGCTAGT 58.500 50.000 5.01 0.00 38.47 2.57
25 26 0.761187 CCTAGCAGGCCATCAAGCTA 59.239 55.000 5.01 9.45 38.47 3.32
26 27 1.277580 ACCTAGCAGGCCATCAAGCT 61.278 55.000 5.01 8.72 39.63 3.74
27 28 0.394899 AACCTAGCAGGCCATCAAGC 60.395 55.000 5.01 0.05 39.63 4.01
28 29 1.340405 ACAACCTAGCAGGCCATCAAG 60.340 52.381 5.01 0.00 39.63 3.02
29 30 0.698238 ACAACCTAGCAGGCCATCAA 59.302 50.000 5.01 0.00 39.63 2.57
30 31 0.698238 AACAACCTAGCAGGCCATCA 59.302 50.000 5.01 0.00 39.63 3.07
31 32 1.745653 GAAACAACCTAGCAGGCCATC 59.254 52.381 5.01 0.00 39.63 3.51
32 33 1.355720 AGAAACAACCTAGCAGGCCAT 59.644 47.619 5.01 0.00 39.63 4.40
33 34 0.771127 AGAAACAACCTAGCAGGCCA 59.229 50.000 5.01 0.00 39.63 5.36
34 35 1.813178 GAAGAAACAACCTAGCAGGCC 59.187 52.381 0.00 0.00 39.63 5.19
35 36 1.464997 CGAAGAAACAACCTAGCAGGC 59.535 52.381 2.50 0.00 39.63 4.85
36 37 2.076863 CCGAAGAAACAACCTAGCAGG 58.923 52.381 1.16 1.16 42.49 4.85
37 38 1.464997 GCCGAAGAAACAACCTAGCAG 59.535 52.381 0.00 0.00 0.00 4.24
38 39 1.071699 AGCCGAAGAAACAACCTAGCA 59.928 47.619 0.00 0.00 0.00 3.49
39 40 1.464997 CAGCCGAAGAAACAACCTAGC 59.535 52.381 0.00 0.00 0.00 3.42
40 41 3.040147 TCAGCCGAAGAAACAACCTAG 57.960 47.619 0.00 0.00 0.00 3.02
41 42 3.695830 ATCAGCCGAAGAAACAACCTA 57.304 42.857 0.00 0.00 0.00 3.08
42 43 2.568623 ATCAGCCGAAGAAACAACCT 57.431 45.000 0.00 0.00 0.00 3.50
43 44 3.643159 AAATCAGCCGAAGAAACAACC 57.357 42.857 0.00 0.00 0.00 3.77
44 45 3.735746 CCAAAATCAGCCGAAGAAACAAC 59.264 43.478 0.00 0.00 0.00 3.32
45 46 3.798548 GCCAAAATCAGCCGAAGAAACAA 60.799 43.478 0.00 0.00 0.00 2.83
46 47 2.288152 GCCAAAATCAGCCGAAGAAACA 60.288 45.455 0.00 0.00 0.00 2.83
47 48 2.328473 GCCAAAATCAGCCGAAGAAAC 58.672 47.619 0.00 0.00 0.00 2.78
48 49 1.272212 GGCCAAAATCAGCCGAAGAAA 59.728 47.619 0.00 0.00 39.87 2.52
49 50 0.887933 GGCCAAAATCAGCCGAAGAA 59.112 50.000 0.00 0.00 39.87 2.52
50 51 2.566824 GGCCAAAATCAGCCGAAGA 58.433 52.632 0.00 0.00 39.87 2.87
56 57 2.182537 CAGCGGGCCAAAATCAGC 59.817 61.111 4.39 0.00 0.00 4.26
57 58 2.713967 CCCAGCGGGCCAAAATCAG 61.714 63.158 4.39 0.00 35.35 2.90
58 59 2.679642 CCCAGCGGGCCAAAATCA 60.680 61.111 4.39 0.00 35.35 2.57
122 123 4.110036 GGCACGGCTCATTTATCTTTTT 57.890 40.909 0.00 0.00 0.00 1.94
123 124 3.782889 GGCACGGCTCATTTATCTTTT 57.217 42.857 0.00 0.00 0.00 2.27
164 165 2.441532 CATGCCTGGGCCTGAAGG 60.442 66.667 12.58 8.09 38.70 3.46
165 166 2.441532 CCATGCCTGGGCCTGAAG 60.442 66.667 16.42 0.00 38.70 3.02
166 167 4.764771 GCCATGCCTGGGCCTGAA 62.765 66.667 16.42 0.00 45.87 3.02
200 201 3.379865 TAATCGGGTCGTGCCAGGC 62.380 63.158 3.66 3.66 39.65 4.85
201 202 1.227263 CTAATCGGGTCGTGCCAGG 60.227 63.158 1.70 0.00 39.65 4.45
202 203 0.249073 CTCTAATCGGGTCGTGCCAG 60.249 60.000 1.70 0.00 39.65 4.85
203 204 1.813859 CTCTAATCGGGTCGTGCCA 59.186 57.895 1.70 0.00 39.65 4.92
204 205 1.591863 GCTCTAATCGGGTCGTGCC 60.592 63.158 0.00 0.00 0.00 5.01
205 206 1.944676 CGCTCTAATCGGGTCGTGC 60.945 63.158 0.00 0.00 0.00 5.34
206 207 0.866061 CACGCTCTAATCGGGTCGTG 60.866 60.000 0.00 0.00 40.65 4.35
207 208 1.310933 ACACGCTCTAATCGGGTCGT 61.311 55.000 0.00 0.00 39.70 4.34
208 209 1.432251 ACACGCTCTAATCGGGTCG 59.568 57.895 0.00 0.00 39.70 4.79
211 212 4.303853 CGACACGCTCTAATCGGG 57.696 61.111 0.00 0.00 36.25 5.14
213 214 0.591741 GACCCGACACGCTCTAATCG 60.592 60.000 0.00 0.00 0.00 3.34
214 215 0.739561 AGACCCGACACGCTCTAATC 59.260 55.000 0.00 0.00 0.00 1.75
215 216 0.456221 CAGACCCGACACGCTCTAAT 59.544 55.000 0.00 0.00 0.00 1.73
216 217 0.892358 ACAGACCCGACACGCTCTAA 60.892 55.000 0.00 0.00 0.00 2.10
217 218 1.303074 ACAGACCCGACACGCTCTA 60.303 57.895 0.00 0.00 0.00 2.43
218 219 2.597805 ACAGACCCGACACGCTCT 60.598 61.111 0.00 0.00 0.00 4.09
219 220 2.126424 GACAGACCCGACACGCTC 60.126 66.667 0.00 0.00 0.00 5.03
220 221 3.681835 GGACAGACCCGACACGCT 61.682 66.667 0.00 0.00 0.00 5.07
248 249 4.671549 CACAAGCACGCTGGCACG 62.672 66.667 7.71 7.71 39.50 5.34
249 250 4.332637 CCACAAGCACGCTGGCAC 62.333 66.667 0.00 0.00 35.83 5.01
252 253 3.357079 GACCCACAAGCACGCTGG 61.357 66.667 0.00 0.00 0.00 4.85
253 254 3.716006 CGACCCACAAGCACGCTG 61.716 66.667 0.00 0.00 0.00 5.18
254 255 4.988598 CCGACCCACAAGCACGCT 62.989 66.667 0.00 0.00 0.00 5.07
257 258 2.672996 ATGCCGACCCACAAGCAC 60.673 61.111 0.00 0.00 38.21 4.40
258 259 2.672651 CATGCCGACCCACAAGCA 60.673 61.111 0.00 0.00 40.00 3.91
259 260 4.120331 GCATGCCGACCCACAAGC 62.120 66.667 6.36 0.00 0.00 4.01
260 261 3.443045 GGCATGCCGACCCACAAG 61.443 66.667 23.48 0.00 0.00 3.16
261 262 4.277009 TGGCATGCCGACCCACAA 62.277 61.111 30.87 8.74 39.42 3.33
262 263 4.720902 CTGGCATGCCGACCCACA 62.721 66.667 30.87 11.35 39.42 4.17
286 287 2.433217 CCATAGCTGGCCAAATGGG 58.567 57.895 24.45 12.77 36.12 4.00
295 296 1.227380 GAGACGTGGCCATAGCTGG 60.227 63.158 9.72 0.00 46.17 4.85
296 297 0.529337 CTGAGACGTGGCCATAGCTG 60.529 60.000 9.72 0.00 39.73 4.24
297 298 1.819229 CTGAGACGTGGCCATAGCT 59.181 57.895 9.72 6.27 39.73 3.32
298 299 1.884926 GCTGAGACGTGGCCATAGC 60.885 63.158 9.72 8.93 38.76 2.97
299 300 1.227380 GGCTGAGACGTGGCCATAG 60.227 63.158 9.72 9.48 44.69 2.23
300 301 2.900273 GGCTGAGACGTGGCCATA 59.100 61.111 9.72 0.00 44.69 2.74
303 304 1.675641 AATTGGCTGAGACGTGGCC 60.676 57.895 0.00 0.00 45.45 5.36
304 305 1.237285 ACAATTGGCTGAGACGTGGC 61.237 55.000 10.83 0.00 0.00 5.01
305 306 1.732259 GTACAATTGGCTGAGACGTGG 59.268 52.381 10.83 0.00 0.00 4.94
306 307 1.732259 GGTACAATTGGCTGAGACGTG 59.268 52.381 10.83 0.00 0.00 4.49
307 308 1.623811 AGGTACAATTGGCTGAGACGT 59.376 47.619 10.83 0.00 0.00 4.34
308 309 2.386661 AGGTACAATTGGCTGAGACG 57.613 50.000 10.83 0.00 0.00 4.18
309 310 4.130118 CCATAGGTACAATTGGCTGAGAC 58.870 47.826 10.83 0.00 0.00 3.36
310 311 4.037222 TCCATAGGTACAATTGGCTGAGA 58.963 43.478 10.83 0.00 0.00 3.27
311 312 4.141620 ACTCCATAGGTACAATTGGCTGAG 60.142 45.833 10.83 6.45 0.00 3.35
312 313 3.780294 ACTCCATAGGTACAATTGGCTGA 59.220 43.478 10.83 0.00 0.00 4.26
313 314 4.156455 ACTCCATAGGTACAATTGGCTG 57.844 45.455 10.83 0.00 0.00 4.85
314 315 5.070580 GTCTACTCCATAGGTACAATTGGCT 59.929 44.000 10.83 0.00 0.00 4.75
315 316 5.163343 TGTCTACTCCATAGGTACAATTGGC 60.163 44.000 10.83 2.02 0.00 4.52
316 317 6.479972 TGTCTACTCCATAGGTACAATTGG 57.520 41.667 10.83 0.00 0.00 3.16
317 318 7.500992 ACATGTCTACTCCATAGGTACAATTG 58.499 38.462 3.24 3.24 0.00 2.32
318 319 7.676683 ACATGTCTACTCCATAGGTACAATT 57.323 36.000 0.00 0.00 0.00 2.32
319 320 8.777578 TTACATGTCTACTCCATAGGTACAAT 57.222 34.615 0.00 0.00 0.00 2.71
320 321 8.598202 TTTACATGTCTACTCCATAGGTACAA 57.402 34.615 0.00 0.00 0.00 2.41
321 322 8.777578 ATTTACATGTCTACTCCATAGGTACA 57.222 34.615 0.00 0.00 0.00 2.90
328 329 9.113838 CAGCTTTTATTTACATGTCTACTCCAT 57.886 33.333 0.00 0.00 0.00 3.41
329 330 7.065803 GCAGCTTTTATTTACATGTCTACTCCA 59.934 37.037 0.00 0.00 0.00 3.86
330 331 7.065803 TGCAGCTTTTATTTACATGTCTACTCC 59.934 37.037 0.00 0.00 0.00 3.85
331 332 7.974675 TGCAGCTTTTATTTACATGTCTACTC 58.025 34.615 0.00 0.00 0.00 2.59
332 333 7.414540 GCTGCAGCTTTTATTTACATGTCTACT 60.415 37.037 31.33 0.00 38.21 2.57
333 334 6.688813 GCTGCAGCTTTTATTTACATGTCTAC 59.311 38.462 31.33 0.00 38.21 2.59
334 335 6.456853 CGCTGCAGCTTTTATTTACATGTCTA 60.457 38.462 34.22 0.00 39.32 2.59
335 336 5.644644 GCTGCAGCTTTTATTTACATGTCT 58.355 37.500 31.33 0.00 38.21 3.41
336 337 4.496895 CGCTGCAGCTTTTATTTACATGTC 59.503 41.667 34.22 1.57 39.32 3.06
337 338 4.155826 TCGCTGCAGCTTTTATTTACATGT 59.844 37.500 34.22 2.69 39.32 3.21
338 339 4.661125 TCGCTGCAGCTTTTATTTACATG 58.339 39.130 34.22 15.21 39.32 3.21
339 340 4.963276 TCGCTGCAGCTTTTATTTACAT 57.037 36.364 34.22 0.00 39.32 2.29
340 341 4.757799 TTCGCTGCAGCTTTTATTTACA 57.242 36.364 34.22 4.79 39.32 2.41
341 342 5.392585 CGTATTCGCTGCAGCTTTTATTTAC 59.607 40.000 34.22 21.94 39.32 2.01
342 343 5.064198 ACGTATTCGCTGCAGCTTTTATTTA 59.936 36.000 34.22 14.10 41.18 1.40
343 344 4.142687 ACGTATTCGCTGCAGCTTTTATTT 60.143 37.500 34.22 15.03 41.18 1.40
344 345 3.374058 ACGTATTCGCTGCAGCTTTTATT 59.626 39.130 34.22 16.01 41.18 1.40
345 346 2.936498 ACGTATTCGCTGCAGCTTTTAT 59.064 40.909 34.22 22.45 41.18 1.40
346 347 2.343101 ACGTATTCGCTGCAGCTTTTA 58.657 42.857 34.22 19.70 41.18 1.52
347 348 1.156736 ACGTATTCGCTGCAGCTTTT 58.843 45.000 34.22 20.69 41.18 2.27
348 349 2.004583 TACGTATTCGCTGCAGCTTT 57.995 45.000 34.22 21.03 41.18 3.51
349 350 1.659098 GTTACGTATTCGCTGCAGCTT 59.341 47.619 34.22 21.37 41.18 3.74
350 351 1.278238 GTTACGTATTCGCTGCAGCT 58.722 50.000 34.22 19.82 41.18 4.24
351 352 0.996462 TGTTACGTATTCGCTGCAGC 59.004 50.000 29.12 29.12 41.18 5.25
352 353 3.544048 CCAATGTTACGTATTCGCTGCAG 60.544 47.826 10.11 10.11 41.18 4.41
353 354 2.350192 CCAATGTTACGTATTCGCTGCA 59.650 45.455 0.00 0.00 41.18 4.41
382 383 3.160269 CCCATATCCCTTTGCCATTCTC 58.840 50.000 0.00 0.00 0.00 2.87
404 405 2.145958 CATCGCCTATGGACACTCTG 57.854 55.000 0.00 0.00 31.38 3.35
428 429 2.288666 GAATGCGTAAAGATGGGCAGA 58.711 47.619 0.00 0.00 39.00 4.26
429 430 1.003545 CGAATGCGTAAAGATGGGCAG 60.004 52.381 0.00 0.00 39.00 4.85
430 431 1.013596 CGAATGCGTAAAGATGGGCA 58.986 50.000 0.00 0.00 40.06 5.36
431 432 0.317020 GCGAATGCGTAAAGATGGGC 60.317 55.000 0.00 0.00 40.36 5.36
432 433 3.825812 GCGAATGCGTAAAGATGGG 57.174 52.632 0.00 0.00 40.36 4.00
445 446 3.562973 TCGTCCGAGTTTAGATAGCGAAT 59.437 43.478 0.00 0.00 0.00 3.34
460 461 6.788684 TGAATTTGAAATAAACTCGTCCGA 57.211 33.333 0.00 0.00 0.00 4.55
461 462 7.845617 TTTGAATTTGAAATAAACTCGTCCG 57.154 32.000 0.00 0.00 0.00 4.79
476 477 8.240682 TCGAACCACCTGTATTATTTGAATTTG 58.759 33.333 0.00 0.00 0.00 2.32
482 483 5.523916 CCTCTCGAACCACCTGTATTATTTG 59.476 44.000 0.00 0.00 0.00 2.32
523 529 0.596341 GCCGCGTTGATTTTGTGGTT 60.596 50.000 4.92 0.00 35.70 3.67
541 547 0.386113 TTTACCAAAGTGGGTTGCGC 59.614 50.000 0.00 0.00 43.37 6.09
543 549 1.866471 GCGTTTACCAAAGTGGGTTGC 60.866 52.381 0.00 0.00 43.37 4.17
554 560 2.614983 GTGGAGACAAAAGCGTTTACCA 59.385 45.455 0.00 3.35 46.06 3.25
562 568 1.398390 CGCATAGGTGGAGACAAAAGC 59.602 52.381 0.00 0.00 46.06 3.51
628 636 5.446473 CCTCAACGCTACATGTCTGATTTTC 60.446 44.000 0.00 0.00 0.00 2.29
701 721 3.387397 CTTATTTCCTAACCGGGCTACG 58.613 50.000 6.32 0.00 43.80 3.51
703 723 3.656496 TCCTTATTTCCTAACCGGGCTA 58.344 45.455 6.32 0.00 0.00 3.93
704 724 2.484602 TCCTTATTTCCTAACCGGGCT 58.515 47.619 6.32 0.00 0.00 5.19
751 771 1.378119 GGGGACGAATGTGGGGAAC 60.378 63.158 0.00 0.00 0.00 3.62
752 772 2.608550 GGGGGACGAATGTGGGGAA 61.609 63.158 0.00 0.00 0.00 3.97
937 970 4.475135 GACGAGGGGAGCTTGGCC 62.475 72.222 0.00 0.00 0.00 5.36
964 1000 1.188871 GGGGTTTTGGGGAATTGCGA 61.189 55.000 0.00 0.00 0.00 5.10
996 1032 2.764128 ATCTCCGACGCCATGGGT 60.764 61.111 15.13 9.85 0.00 4.51
1275 1343 0.842467 AGTAAAGCTGGGAGGGTGCT 60.842 55.000 0.00 0.00 38.87 4.40
1302 1391 1.072489 TGTCCAATTCCAAGCGTGGTA 59.928 47.619 18.61 9.69 46.11 3.25
1303 1392 0.179004 TGTCCAATTCCAAGCGTGGT 60.179 50.000 18.61 0.00 46.11 4.16
1305 1394 1.733389 GCATGTCCAATTCCAAGCGTG 60.733 52.381 0.00 0.00 0.00 5.34
1306 1395 0.527565 GCATGTCCAATTCCAAGCGT 59.472 50.000 0.00 0.00 0.00 5.07
1308 1397 0.803380 GCGCATGTCCAATTCCAAGC 60.803 55.000 0.30 0.00 0.00 4.01
1314 1629 2.128771 ACTAAGGCGCATGTCCAATT 57.871 45.000 10.83 0.00 0.00 2.32
1320 1635 2.170607 ACAATCCTACTAAGGCGCATGT 59.829 45.455 10.83 0.00 43.31 3.21
1321 1636 2.838736 ACAATCCTACTAAGGCGCATG 58.161 47.619 10.83 0.00 43.31 4.06
1325 1640 4.810790 CTCCATACAATCCTACTAAGGCG 58.189 47.826 0.00 0.00 43.31 5.52
1331 1646 4.410228 ACACATGCTCCATACAATCCTACT 59.590 41.667 0.00 0.00 0.00 2.57
1333 1648 4.408596 TCACACATGCTCCATACAATCCTA 59.591 41.667 0.00 0.00 0.00 2.94
1345 1660 3.829948 CATTCCAAGTTCACACATGCTC 58.170 45.455 0.00 0.00 0.00 4.26
1353 1668 1.154225 CGCCGCATTCCAAGTTCAC 60.154 57.895 0.00 0.00 0.00 3.18
1373 1688 2.003301 GAGCAGCTAAAGAAACTCCCG 58.997 52.381 0.00 0.00 0.00 5.14
1379 1694 4.584325 ACACCAAATGAGCAGCTAAAGAAA 59.416 37.500 0.00 0.00 0.00 2.52
1382 1697 3.755378 AGACACCAAATGAGCAGCTAAAG 59.245 43.478 0.00 0.00 0.00 1.85
1383 1698 3.753272 GAGACACCAAATGAGCAGCTAAA 59.247 43.478 0.00 0.00 0.00 1.85
1385 1700 2.302733 TGAGACACCAAATGAGCAGCTA 59.697 45.455 0.00 0.00 0.00 3.32
1406 1731 5.194537 AGGACATTCAATTATCCCCTCAACT 59.805 40.000 0.00 0.00 30.99 3.16
1487 1830 4.230745 ACCAACTCAAATATACGGCCTT 57.769 40.909 0.00 0.00 0.00 4.35
1555 1991 1.527696 GCGAATGCGACAATGAACAG 58.472 50.000 0.00 0.00 40.82 3.16
1573 2009 5.699001 AGGAATTAAAACGGAAACAAATGGC 59.301 36.000 0.00 0.00 0.00 4.40
1587 2023 7.654022 ACTTGAAACTGTGGAGGAATTAAAA 57.346 32.000 0.00 0.00 0.00 1.52
1608 2044 3.973135 CGCTCATTCGCTTATACGTACTT 59.027 43.478 0.00 0.00 0.00 2.24
1631 2067 1.000283 GACTATCTCGAGCCCACCATG 60.000 57.143 7.81 0.00 0.00 3.66
1632 2068 1.133325 AGACTATCTCGAGCCCACCAT 60.133 52.381 7.81 0.00 0.00 3.55
1644 2080 7.340743 ACACTACATTCTACAAGCAGACTATCT 59.659 37.037 0.00 0.00 0.00 1.98
1656 2092 4.407621 CCATGGGGTACACTACATTCTACA 59.592 45.833 2.85 0.00 0.00 2.74
1657 2093 4.742743 GCCATGGGGTACACTACATTCTAC 60.743 50.000 15.13 0.00 36.17 2.59
1660 2096 2.572290 GCCATGGGGTACACTACATTC 58.428 52.381 15.13 0.00 36.17 2.67
1694 2136 3.308595 CACGCACTCAAGTACAAAACAGA 59.691 43.478 0.00 0.00 0.00 3.41
1700 2142 1.855978 CGTTCACGCACTCAAGTACAA 59.144 47.619 0.00 0.00 0.00 2.41
1719 2161 2.740714 GCACTGCGTAGAAAGCCCG 61.741 63.158 7.78 0.00 0.00 6.13
1736 2178 3.477530 ACTTCAACTACCAGGAACAAGC 58.522 45.455 0.00 0.00 0.00 4.01
1767 2215 1.892474 TCACCCAGCCAAATAAAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
1768 2216 1.892474 GTCACCCAGCCAAATAAAGCA 59.108 47.619 0.00 0.00 0.00 3.91
1769 2217 1.135402 CGTCACCCAGCCAAATAAAGC 60.135 52.381 0.00 0.00 0.00 3.51
1770 2218 2.432444 TCGTCACCCAGCCAAATAAAG 58.568 47.619 0.00 0.00 0.00 1.85
1773 2221 2.799126 AATCGTCACCCAGCCAAATA 57.201 45.000 0.00 0.00 0.00 1.40
1774 2222 1.923356 AAATCGTCACCCAGCCAAAT 58.077 45.000 0.00 0.00 0.00 2.32
1775 2223 1.339610 CAAAATCGTCACCCAGCCAAA 59.660 47.619 0.00 0.00 0.00 3.28
1788 2238 3.853307 GCTGTCCAAAGACCACAAAATCG 60.853 47.826 0.00 0.00 42.81 3.34
1960 2410 2.225491 CCAAAGACGCGGAAGAAATCAA 59.775 45.455 12.47 0.00 0.00 2.57
1964 2414 1.512156 GGCCAAAGACGCGGAAGAAA 61.512 55.000 12.47 0.00 0.00 2.52
2005 2456 5.814705 TGAATGAACATTTGACACCCAAAAC 59.185 36.000 1.56 0.00 46.64 2.43
2064 2515 7.893124 ATGAGAATAGTTGATTGATTTGGCT 57.107 32.000 0.00 0.00 0.00 4.75
2623 3440 7.021790 GGCTAAGTTGCTGTGTTCTATTTAAC 58.978 38.462 0.00 0.00 0.00 2.01
2624 3441 6.712998 TGGCTAAGTTGCTGTGTTCTATTTAA 59.287 34.615 0.00 0.00 0.00 1.52
3024 3870 8.752005 AGAAAGCAGGCATACAAAATCTATAA 57.248 30.769 0.00 0.00 0.00 0.98
3117 3963 0.319813 GGTCCCAAAAGCATGTGCAC 60.320 55.000 10.75 10.75 45.16 4.57
3130 3976 5.263872 ACACATAAAATTACCAGGTCCCA 57.736 39.130 0.00 0.00 0.00 4.37
3131 3977 6.541278 GTCTACACATAAAATTACCAGGTCCC 59.459 42.308 0.00 0.00 0.00 4.46
3285 4131 8.794335 AGGATAGGTCACAAAGAAGAAAATAC 57.206 34.615 0.00 0.00 0.00 1.89
3601 4449 7.439655 CCTTCTAGCATTGTCCTGTAAGTAATC 59.560 40.741 0.00 0.00 0.00 1.75
3605 4453 4.080863 CCCTTCTAGCATTGTCCTGTAAGT 60.081 45.833 0.00 0.00 0.00 2.24
3946 4795 6.697641 ATTTTGGAACAGAGGGAGTACTAA 57.302 37.500 0.00 0.00 42.39 2.24
3951 4800 5.163088 ACAAGTATTTTGGAACAGAGGGAGT 60.163 40.000 0.00 0.00 42.39 3.85
3956 4805 5.334105 CCACGACAAGTATTTTGGAACAGAG 60.334 44.000 0.00 0.00 42.39 3.35
3957 4806 4.513692 CCACGACAAGTATTTTGGAACAGA 59.486 41.667 0.00 0.00 42.39 3.41
3958 4807 4.274950 ACCACGACAAGTATTTTGGAACAG 59.725 41.667 0.00 0.00 42.39 3.16
3959 4808 4.200874 ACCACGACAAGTATTTTGGAACA 58.799 39.130 0.00 0.00 0.00 3.18
3971 4820 4.318831 GCTCAGAACTAAAACCACGACAAG 60.319 45.833 0.00 0.00 0.00 3.16
3981 4830 5.237779 CCGTGGTTTTAGCTCAGAACTAAAA 59.762 40.000 12.80 12.80 43.68 1.52
3993 4842 3.842732 AATACTTGCCGTGGTTTTAGC 57.157 42.857 0.00 0.00 0.00 3.09
4004 4853 3.132824 CCCTCCATTCCAAAATACTTGCC 59.867 47.826 0.00 0.00 0.00 4.52
4005 4854 4.023291 TCCCTCCATTCCAAAATACTTGC 58.977 43.478 0.00 0.00 0.00 4.01
4018 4867 7.699878 ACTTTTTCATAACTACTCCCTCCATT 58.300 34.615 0.00 0.00 0.00 3.16
4020 4869 6.697641 ACTTTTTCATAACTACTCCCTCCA 57.302 37.500 0.00 0.00 0.00 3.86
4052 4901 2.361757 TGACAAGAACCAACATGCTTGG 59.638 45.455 19.38 19.38 41.41 3.61
4064 4913 6.679327 AGAAAAGTGGTAACTGACAAGAAC 57.321 37.500 0.00 0.00 36.51 3.01
4266 5175 5.425630 GGTGGTAATAGGGAAGTAACACTG 58.574 45.833 1.36 0.00 36.03 3.66
4271 5180 4.702196 ACTGGGTGGTAATAGGGAAGTAA 58.298 43.478 0.00 0.00 0.00 2.24
4338 5247 8.490355 CCTGCAGAAAGTAAAAGCAAATTTTAG 58.510 33.333 17.39 0.00 42.58 1.85
4469 5384 3.797256 ACGCGTCTAGAATAGCAAATGAC 59.203 43.478 5.58 0.00 38.99 3.06
4487 5402 6.183359 GCTTAAACCTTAAATTTGGTAACGCG 60.183 38.462 3.53 3.53 42.51 6.01
4695 5610 3.004419 ACGACACGTTCAGAAATCAGAGA 59.996 43.478 0.00 0.00 36.35 3.10
4814 5729 0.321298 GAAAGCCTACCTTGCCGACA 60.321 55.000 0.00 0.00 33.01 4.35
4876 5792 4.946157 CAGAATGGCAAGAGGTGATAAGTT 59.054 41.667 0.00 0.00 0.00 2.66
4877 5793 4.521146 CAGAATGGCAAGAGGTGATAAGT 58.479 43.478 0.00 0.00 0.00 2.24
4878 5794 3.314635 GCAGAATGGCAAGAGGTGATAAG 59.685 47.826 0.00 0.00 35.86 1.73
4879 5795 3.282021 GCAGAATGGCAAGAGGTGATAA 58.718 45.455 0.00 0.00 35.86 1.75
4880 5796 2.742856 CGCAGAATGGCAAGAGGTGATA 60.743 50.000 0.00 0.00 35.86 2.15
4881 5797 1.760192 GCAGAATGGCAAGAGGTGAT 58.240 50.000 0.00 0.00 35.86 3.06
4882 5798 0.674581 CGCAGAATGGCAAGAGGTGA 60.675 55.000 0.00 0.00 35.86 4.02
4883 5799 0.957395 ACGCAGAATGGCAAGAGGTG 60.957 55.000 0.00 0.00 35.86 4.00
4884 5800 0.250901 AACGCAGAATGGCAAGAGGT 60.251 50.000 0.00 0.00 35.86 3.85
4885 5801 0.883833 AAACGCAGAATGGCAAGAGG 59.116 50.000 0.00 0.00 35.86 3.69
4886 5802 1.536766 TCAAACGCAGAATGGCAAGAG 59.463 47.619 0.00 0.00 35.86 2.85
4887 5803 1.266718 GTCAAACGCAGAATGGCAAGA 59.733 47.619 0.00 0.00 35.86 3.02
4888 5804 1.666888 GGTCAAACGCAGAATGGCAAG 60.667 52.381 0.00 0.00 35.86 4.01
4889 5805 0.313672 GGTCAAACGCAGAATGGCAA 59.686 50.000 0.00 0.00 35.86 4.52
4890 5806 0.537143 AGGTCAAACGCAGAATGGCA 60.537 50.000 0.00 0.00 35.86 4.92
4891 5807 0.109597 CAGGTCAAACGCAGAATGGC 60.110 55.000 0.00 0.00 35.86 4.40
4892 5808 0.523072 CCAGGTCAAACGCAGAATGG 59.477 55.000 0.00 0.00 35.86 3.16
4893 5809 0.523072 CCCAGGTCAAACGCAGAATG 59.477 55.000 0.00 0.00 40.87 2.67
4894 5810 0.400213 TCCCAGGTCAAACGCAGAAT 59.600 50.000 0.00 0.00 0.00 2.40
4895 5811 0.400213 ATCCCAGGTCAAACGCAGAA 59.600 50.000 0.00 0.00 0.00 3.02
4896 5812 0.321564 CATCCCAGGTCAAACGCAGA 60.322 55.000 0.00 0.00 0.00 4.26
4897 5813 0.606401 ACATCCCAGGTCAAACGCAG 60.606 55.000 0.00 0.00 0.00 5.18
4898 5814 0.888736 CACATCCCAGGTCAAACGCA 60.889 55.000 0.00 0.00 0.00 5.24
4899 5815 1.875963 CACATCCCAGGTCAAACGC 59.124 57.895 0.00 0.00 0.00 4.84
4900 5816 0.888736 TGCACATCCCAGGTCAAACG 60.889 55.000 0.00 0.00 0.00 3.60
4901 5817 1.549203 ATGCACATCCCAGGTCAAAC 58.451 50.000 0.00 0.00 0.00 2.93
4902 5818 2.307496 AATGCACATCCCAGGTCAAA 57.693 45.000 0.00 0.00 0.00 2.69
4903 5819 2.308570 ACTAATGCACATCCCAGGTCAA 59.691 45.455 0.00 0.00 0.00 3.18
4904 5820 1.915489 ACTAATGCACATCCCAGGTCA 59.085 47.619 0.00 0.00 0.00 4.02
4905 5821 2.717639 ACTAATGCACATCCCAGGTC 57.282 50.000 0.00 0.00 0.00 3.85
4906 5822 3.010584 AGAAACTAATGCACATCCCAGGT 59.989 43.478 0.00 0.00 0.00 4.00
4907 5823 3.624777 AGAAACTAATGCACATCCCAGG 58.375 45.455 0.00 0.00 0.00 4.45
4908 5824 5.416952 AGAAAGAAACTAATGCACATCCCAG 59.583 40.000 0.00 0.00 0.00 4.45
4909 5825 5.324409 AGAAAGAAACTAATGCACATCCCA 58.676 37.500 0.00 0.00 0.00 4.37
4910 5826 5.904362 AGAAAGAAACTAATGCACATCCC 57.096 39.130 0.00 0.00 0.00 3.85
4911 5827 6.583806 CACAAGAAAGAAACTAATGCACATCC 59.416 38.462 0.00 0.00 0.00 3.51
4912 5828 6.088616 GCACAAGAAAGAAACTAATGCACATC 59.911 38.462 0.00 0.00 32.36 3.06
4913 5829 5.922544 GCACAAGAAAGAAACTAATGCACAT 59.077 36.000 0.00 0.00 32.36 3.21
4914 5830 5.067674 AGCACAAGAAAGAAACTAATGCACA 59.932 36.000 0.00 0.00 33.60 4.57
4915 5831 5.523369 AGCACAAGAAAGAAACTAATGCAC 58.477 37.500 0.00 0.00 33.60 4.57
4916 5832 5.278463 GGAGCACAAGAAAGAAACTAATGCA 60.278 40.000 0.00 0.00 33.60 3.96
4917 5833 5.157067 GGAGCACAAGAAAGAAACTAATGC 58.843 41.667 0.00 0.00 0.00 3.56
4918 5834 5.049405 ACGGAGCACAAGAAAGAAACTAATG 60.049 40.000 0.00 0.00 0.00 1.90
4919 5835 5.063880 ACGGAGCACAAGAAAGAAACTAAT 58.936 37.500 0.00 0.00 0.00 1.73
4920 5836 4.448210 ACGGAGCACAAGAAAGAAACTAA 58.552 39.130 0.00 0.00 0.00 2.24
4921 5837 4.067972 ACGGAGCACAAGAAAGAAACTA 57.932 40.909 0.00 0.00 0.00 2.24
4922 5838 2.919228 ACGGAGCACAAGAAAGAAACT 58.081 42.857 0.00 0.00 0.00 2.66
4923 5839 4.524749 GTTACGGAGCACAAGAAAGAAAC 58.475 43.478 0.00 0.00 0.00 2.78
4924 5840 3.562557 GGTTACGGAGCACAAGAAAGAAA 59.437 43.478 0.00 0.00 0.00 2.52
4925 5841 3.135994 GGTTACGGAGCACAAGAAAGAA 58.864 45.455 0.00 0.00 0.00 2.52
4926 5842 2.367567 AGGTTACGGAGCACAAGAAAGA 59.632 45.455 0.00 0.00 0.00 2.52
4927 5843 2.767505 AGGTTACGGAGCACAAGAAAG 58.232 47.619 0.00 0.00 0.00 2.62
4928 5844 2.922740 AGGTTACGGAGCACAAGAAA 57.077 45.000 0.00 0.00 0.00 2.52
4929 5845 2.028748 GGTAGGTTACGGAGCACAAGAA 60.029 50.000 0.00 0.00 0.00 2.52
4930 5846 1.547372 GGTAGGTTACGGAGCACAAGA 59.453 52.381 0.00 0.00 0.00 3.02
4931 5847 1.549170 AGGTAGGTTACGGAGCACAAG 59.451 52.381 0.00 0.00 0.00 3.16
4932 5848 1.547372 GAGGTAGGTTACGGAGCACAA 59.453 52.381 0.00 0.00 0.00 3.33
4933 5849 1.180029 GAGGTAGGTTACGGAGCACA 58.820 55.000 0.00 0.00 0.00 4.57
4934 5850 0.459078 GGAGGTAGGTTACGGAGCAC 59.541 60.000 0.00 0.00 0.00 4.40
4935 5851 0.333993 AGGAGGTAGGTTACGGAGCA 59.666 55.000 0.00 0.00 0.00 4.26
4936 5852 2.228925 CTAGGAGGTAGGTTACGGAGC 58.771 57.143 0.00 0.00 0.00 4.70
4937 5853 2.861274 CCTAGGAGGTAGGTTACGGAG 58.139 57.143 1.05 0.00 43.39 4.63
4952 5868 6.238648 AGTTTGTTGTTACAATCCTCCTAGG 58.761 40.000 0.82 0.82 43.43 3.02
4953 5869 7.162082 AGAGTTTGTTGTTACAATCCTCCTAG 58.838 38.462 0.00 0.00 43.43 3.02
4954 5870 7.016268 AGAGAGTTTGTTGTTACAATCCTCCTA 59.984 37.037 0.00 0.00 43.43 2.94
4955 5871 5.941788 AGAGTTTGTTGTTACAATCCTCCT 58.058 37.500 0.00 0.00 43.43 3.69
4956 5872 5.998363 AGAGAGTTTGTTGTTACAATCCTCC 59.002 40.000 0.00 0.00 43.43 4.30
4957 5873 6.931840 AGAGAGAGTTTGTTGTTACAATCCTC 59.068 38.462 0.00 4.90 43.43 3.71
4958 5874 6.831976 AGAGAGAGTTTGTTGTTACAATCCT 58.168 36.000 0.00 0.00 43.43 3.24
4959 5875 7.442666 AGAAGAGAGAGTTTGTTGTTACAATCC 59.557 37.037 0.00 0.00 43.43 3.01
4960 5876 8.371770 AGAAGAGAGAGTTTGTTGTTACAATC 57.628 34.615 0.00 0.00 43.43 2.67
4961 5877 7.987458 TGAGAAGAGAGAGTTTGTTGTTACAAT 59.013 33.333 0.00 0.00 43.43 2.71
4962 5878 7.327975 TGAGAAGAGAGAGTTTGTTGTTACAA 58.672 34.615 0.00 0.00 42.34 2.41
4963 5879 6.873997 TGAGAAGAGAGAGTTTGTTGTTACA 58.126 36.000 0.00 0.00 0.00 2.41
4964 5880 7.772332 TTGAGAAGAGAGAGTTTGTTGTTAC 57.228 36.000 0.00 0.00 0.00 2.50
4965 5881 7.041780 GCATTGAGAAGAGAGAGTTTGTTGTTA 60.042 37.037 0.00 0.00 0.00 2.41
4966 5882 6.238593 GCATTGAGAAGAGAGAGTTTGTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
4967 5883 5.238214 GCATTGAGAAGAGAGAGTTTGTTGT 59.762 40.000 0.00 0.00 0.00 3.32
4968 5884 5.237996 TGCATTGAGAAGAGAGAGTTTGTTG 59.762 40.000 0.00 0.00 0.00 3.33
4969 5885 5.371526 TGCATTGAGAAGAGAGAGTTTGTT 58.628 37.500 0.00 0.00 0.00 2.83
4970 5886 4.965814 TGCATTGAGAAGAGAGAGTTTGT 58.034 39.130 0.00 0.00 0.00 2.83
4971 5887 5.936686 TTGCATTGAGAAGAGAGAGTTTG 57.063 39.130 0.00 0.00 0.00 2.93
4972 5888 6.236409 TCATTGCATTGAGAAGAGAGAGTTT 58.764 36.000 7.19 0.00 0.00 2.66
4973 5889 5.802465 TCATTGCATTGAGAAGAGAGAGTT 58.198 37.500 7.19 0.00 0.00 3.01
4974 5890 5.417754 TCATTGCATTGAGAAGAGAGAGT 57.582 39.130 7.19 0.00 0.00 3.24
4975 5891 6.148976 TGTTTCATTGCATTGAGAAGAGAGAG 59.851 38.462 10.88 0.00 0.00 3.20
4976 5892 5.999600 TGTTTCATTGCATTGAGAAGAGAGA 59.000 36.000 10.88 0.00 0.00 3.10
4977 5893 6.084925 GTGTTTCATTGCATTGAGAAGAGAG 58.915 40.000 10.88 0.00 0.00 3.20
4978 5894 5.532032 TGTGTTTCATTGCATTGAGAAGAGA 59.468 36.000 10.88 4.62 0.00 3.10
4979 5895 5.765176 TGTGTTTCATTGCATTGAGAAGAG 58.235 37.500 10.88 0.00 0.00 2.85
4980 5896 5.771153 TGTGTTTCATTGCATTGAGAAGA 57.229 34.783 10.88 5.65 0.00 2.87
4981 5897 6.073980 CCTTTGTGTTTCATTGCATTGAGAAG 60.074 38.462 10.88 9.32 0.00 2.85
4982 5898 5.754406 CCTTTGTGTTTCATTGCATTGAGAA 59.246 36.000 10.88 6.72 0.00 2.87
4983 5899 5.163426 ACCTTTGTGTTTCATTGCATTGAGA 60.163 36.000 10.88 4.72 0.00 3.27
4984 5900 5.051816 ACCTTTGTGTTTCATTGCATTGAG 58.948 37.500 10.88 0.45 0.00 3.02
4985 5901 5.021033 ACCTTTGTGTTTCATTGCATTGA 57.979 34.783 7.19 7.19 0.00 2.57
4986 5902 5.051816 AGACCTTTGTGTTTCATTGCATTG 58.948 37.500 2.08 2.08 0.00 2.82
4987 5903 5.069516 AGAGACCTTTGTGTTTCATTGCATT 59.930 36.000 0.00 0.00 0.00 3.56
4988 5904 4.586001 AGAGACCTTTGTGTTTCATTGCAT 59.414 37.500 0.00 0.00 0.00 3.96
4989 5905 3.953612 AGAGACCTTTGTGTTTCATTGCA 59.046 39.130 0.00 0.00 0.00 4.08
4990 5906 4.574599 AGAGACCTTTGTGTTTCATTGC 57.425 40.909 0.00 0.00 0.00 3.56
4991 5907 4.741676 GCAAGAGACCTTTGTGTTTCATTG 59.258 41.667 0.00 0.00 0.00 2.82
4992 5908 4.498009 CGCAAGAGACCTTTGTGTTTCATT 60.498 41.667 0.00 0.00 43.02 2.57
4993 5909 3.003689 CGCAAGAGACCTTTGTGTTTCAT 59.996 43.478 0.00 0.00 43.02 2.57
4994 5910 2.354510 CGCAAGAGACCTTTGTGTTTCA 59.645 45.455 0.00 0.00 43.02 2.69
4995 5911 2.354821 ACGCAAGAGACCTTTGTGTTTC 59.645 45.455 0.00 0.00 43.62 2.78
4996 5912 2.365582 ACGCAAGAGACCTTTGTGTTT 58.634 42.857 0.00 0.00 43.62 2.83
4997 5913 2.038387 ACGCAAGAGACCTTTGTGTT 57.962 45.000 0.00 0.00 43.62 3.32
4998 5914 2.038387 AACGCAAGAGACCTTTGTGT 57.962 45.000 0.00 0.00 43.62 3.72
4999 5915 3.065371 AGAAAACGCAAGAGACCTTTGTG 59.935 43.478 0.00 0.00 43.62 3.33
5000 5916 3.279434 AGAAAACGCAAGAGACCTTTGT 58.721 40.909 0.00 0.00 43.62 2.83
5001 5917 3.604772 CGAGAAAACGCAAGAGACCTTTG 60.605 47.826 0.00 0.00 43.62 2.77
5002 5918 2.544267 CGAGAAAACGCAAGAGACCTTT 59.456 45.455 0.00 0.00 43.62 3.11
5003 5919 2.135933 CGAGAAAACGCAAGAGACCTT 58.864 47.619 0.00 0.00 43.62 3.50
5004 5920 1.340248 TCGAGAAAACGCAAGAGACCT 59.660 47.619 0.00 0.00 43.62 3.85
5005 5921 1.779569 TCGAGAAAACGCAAGAGACC 58.220 50.000 0.00 0.00 43.62 3.85
5006 5922 3.854286 TTTCGAGAAAACGCAAGAGAC 57.146 42.857 0.00 0.00 43.62 3.36
5007 5923 4.569162 TCTTTTTCGAGAAAACGCAAGAGA 59.431 37.500 10.18 7.13 39.70 3.10
5008 5924 4.833126 TCTTTTTCGAGAAAACGCAAGAG 58.167 39.130 10.18 5.15 39.70 2.85
5009 5925 4.868450 TCTTTTTCGAGAAAACGCAAGA 57.132 36.364 10.18 8.04 39.70 3.02
5010 5926 5.925189 TTTCTTTTTCGAGAAAACGCAAG 57.075 34.783 10.18 6.08 41.35 4.01
5034 5950 9.965902 ACATCTTCAGAATAGGTGATAAGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
5048 5964 6.365970 AACTGTCCAGTACATCTTCAGAAT 57.634 37.500 0.00 0.00 41.58 2.40
5062 5978 5.181811 TCATCAAGCAACATAAACTGTCCAG 59.818 40.000 0.00 0.00 36.98 3.86
5091 6007 8.857098 GTGGTATCATAACCTTCTGTCTACATA 58.143 37.037 0.00 0.00 40.44 2.29
5138 6054 3.724494 GCACGGGCTCTTCATAGC 58.276 61.111 0.00 0.00 41.99 2.97
5408 6324 0.668535 GACAGTCCCTGCCAACAAAC 59.331 55.000 0.00 0.00 34.37 2.93
5427 6343 0.036577 CTGGAGAAGCTGGGTCACTG 60.037 60.000 0.00 0.00 0.00 3.66
5457 6373 3.370840 ACAGAATAGCCAAGCCAATCA 57.629 42.857 0.00 0.00 0.00 2.57
5636 6554 6.312918 GTCAGTGGCTTCACGATTTTAGAATA 59.687 38.462 0.00 0.00 45.55 1.75
5648 6566 1.068748 CAAGCATGTCAGTGGCTTCAC 60.069 52.381 0.00 0.00 45.42 3.18
5678 6596 8.782343 ACAATGTTGAAGATTGTGCTTGTGCA 62.782 38.462 18.30 0.00 41.46 4.57
5679 6597 3.082698 TGTTGAAGATTGTGCTTGTGC 57.917 42.857 0.00 0.00 40.20 4.57
5680 6598 5.045215 ACAATGTTGAAGATTGTGCTTGTG 58.955 37.500 18.30 0.00 41.46 3.33
5681 6599 5.266733 ACAATGTTGAAGATTGTGCTTGT 57.733 34.783 18.30 0.00 41.46 3.16
5682 6600 6.256104 TCAAACAATGTTGAAGATTGTGCTTG 59.744 34.615 19.46 19.06 42.04 4.01
5683 6601 6.339730 TCAAACAATGTTGAAGATTGTGCTT 58.660 32.000 19.46 9.72 42.04 3.91
5702 6620 7.590279 TGCCTTAGTTTAGTTAGCAATCAAAC 58.410 34.615 0.00 0.00 0.00 2.93
5758 6676 5.567138 AGATACAGCAAGGCACAAATAAC 57.433 39.130 0.00 0.00 0.00 1.89
5793 6713 3.496155 GTGTTACCACAGTAGCGTACTC 58.504 50.000 0.00 0.00 41.44 2.59
5798 6718 2.450609 AAGGTGTTACCACAGTAGCG 57.549 50.000 0.28 0.00 43.71 4.26
5806 6726 7.219322 GGAAAACTCTAGTAAAGGTGTTACCA 58.781 38.462 0.28 0.00 41.95 3.25
5863 6783 9.430399 AATCTGACATATCCAGAAATTTCCATT 57.570 29.630 14.61 0.75 43.07 3.16
5873 6793 4.103627 ACATGCCAATCTGACATATCCAGA 59.896 41.667 6.76 6.76 43.84 3.86
5940 6860 7.986085 ATATTGCCTGACCTATAATGTTGTC 57.014 36.000 0.00 0.00 0.00 3.18
5990 6910 8.706492 TTTGCTATTGAATTCCAAACATGATC 57.294 30.769 0.00 0.00 38.43 2.92
6111 7096 1.339929 GGAAAACATGGTCCCACACAC 59.660 52.381 0.00 0.00 0.00 3.82
6132 7117 2.885894 AGCGAGGCTATAACTACTGGAC 59.114 50.000 0.00 0.00 36.99 4.02
6151 7136 0.614979 TGTCCCTCCTGTAGTCCAGC 60.615 60.000 0.00 0.00 40.06 4.85
6202 7187 7.015682 TGCTATCTACAAGGGAGAGAAATAAGG 59.984 40.741 0.00 0.00 0.00 2.69
6230 7330 3.469008 TCTCGTTGGTTGTGATGTTCT 57.531 42.857 0.00 0.00 0.00 3.01
6393 7493 1.324736 CCTATTTCTTCGTCAGTGCGC 59.675 52.381 0.00 0.00 0.00 6.09
6705 7807 2.760374 CTAAATGGACGATGGAGCCTC 58.240 52.381 0.00 0.00 0.00 4.70
6824 7962 7.667043 AGTAACATTTTCGAAATGCAGACTA 57.333 32.000 12.12 0.00 0.00 2.59
6961 8100 7.282224 GCTACATTTTCCCAAGTGTGTATATGA 59.718 37.037 0.00 0.00 33.99 2.15
7080 8224 3.935203 TCGTCCCGTATAACGATATCCTC 59.065 47.826 0.15 0.00 46.05 3.71
7243 8388 8.006298 TGAATAGCACCTCAAAAGAAAAAGAA 57.994 30.769 0.00 0.00 0.00 2.52
7258 8406 2.222027 GTACAGCCCATGAATAGCACC 58.778 52.381 0.00 0.00 0.00 5.01
7321 10290 5.402568 GTCGCGTGAACATATATCTGAATGT 59.597 40.000 5.77 0.00 37.94 2.71
7361 10330 2.066262 ACTCGGCGTTTTCATGTACAG 58.934 47.619 6.85 0.00 0.00 2.74
7395 10364 1.407936 TTTAGCTTTGGCAGGCAACA 58.592 45.000 9.35 0.38 41.70 3.33
7396 10365 2.035832 TCTTTTAGCTTTGGCAGGCAAC 59.964 45.455 9.35 0.00 41.70 4.17
7414 10383 0.754472 TCTTTCGGTTGGACGGTCTT 59.246 50.000 8.23 0.00 0.00 3.01
7450 10419 2.722094 TGTTCGGCTGGCTGATTTATT 58.278 42.857 4.87 0.00 0.00 1.40
7454 10423 1.549203 AAATGTTCGGCTGGCTGATT 58.451 45.000 4.87 0.00 0.00 2.57
7455 10424 1.203052 CAAAATGTTCGGCTGGCTGAT 59.797 47.619 4.87 0.00 0.00 2.90
7474 10443 0.611200 ACTACCTACATTGCGGTGCA 59.389 50.000 8.14 0.00 36.47 4.57
7477 10446 5.410355 TCTAAAACTACCTACATTGCGGT 57.590 39.130 3.99 3.99 37.31 5.68
7532 10502 6.524586 CGACATTATTTTTCTTCTCCAACAGC 59.475 38.462 0.00 0.00 0.00 4.40
7538 10508 6.310711 ACGTCTCGACATTATTTTTCTTCTCC 59.689 38.462 0.00 0.00 0.00 3.71
7558 10530 1.403780 GGCTTGGTGTTATCGACGTCT 60.404 52.381 14.70 0.00 0.00 4.18
7559 10531 0.997196 GGCTTGGTGTTATCGACGTC 59.003 55.000 5.18 5.18 0.00 4.34
7594 10566 8.567948 AGAGTTACATTTCACAAACGAATGAAT 58.432 29.630 0.00 0.00 34.87 2.57
7595 10567 7.925993 AGAGTTACATTTCACAAACGAATGAA 58.074 30.769 0.00 0.00 35.36 2.57
7596 10568 7.490962 AGAGTTACATTTCACAAACGAATGA 57.509 32.000 0.00 0.00 35.36 2.57
7597 10569 7.357532 GCAAGAGTTACATTTCACAAACGAATG 60.358 37.037 0.00 0.00 36.95 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.