Multiple sequence alignment - TraesCS7A01G517200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G517200 chr7A 100.000 9129 0 0 1 9129 701539936 701530808 0.000000e+00 16859
1 TraesCS7A01G517200 chr7A 90.746 335 29 2 1453 1786 77890809 77891142 6.500000e-121 446
2 TraesCS7A01G517200 chr7D 91.918 3019 156 40 720 3720 611602059 611599111 0.000000e+00 4143
3 TraesCS7A01G517200 chr7D 95.127 2442 101 16 3738 6168 611598808 611596374 0.000000e+00 3834
4 TraesCS7A01G517200 chr7D 91.915 2387 118 37 6467 8801 611596159 611593796 0.000000e+00 3269
5 TraesCS7A01G517200 chr7D 87.305 512 61 4 1 511 611602948 611602440 4.750000e-162 582
6 TraesCS7A01G517200 chr7D 87.251 251 23 8 6174 6416 611596407 611596158 2.510000e-70 278
7 TraesCS7A01G517200 chr7D 90.323 155 14 1 510 663 611602232 611602078 1.550000e-47 202
8 TraesCS7A01G517200 chr7B 89.387 3034 195 66 695 3680 700837969 700835015 0.000000e+00 3701
9 TraesCS7A01G517200 chr7B 91.356 2684 142 44 6174 8788 700832391 700829729 0.000000e+00 3589
10 TraesCS7A01G517200 chr7B 92.366 2515 130 30 3673 6168 700834829 700832358 0.000000e+00 3524
11 TraesCS7A01G517200 chr7B 88.577 499 52 5 1 498 700838940 700838446 1.310000e-167 601
12 TraesCS7A01G517200 chr7B 91.165 249 21 1 8881 9129 700829648 700829401 4.080000e-88 337
13 TraesCS7A01G517200 chr4A 91.940 335 25 2 1453 1786 597815354 597815687 1.390000e-127 468
14 TraesCS7A01G517200 chr4A 90.741 162 15 0 1795 1956 597815851 597816012 5.550000e-52 217
15 TraesCS7A01G517200 chr6B 91.642 335 26 2 1453 1786 506136200 506135867 6.460000e-126 462
16 TraesCS7A01G517200 chr6B 91.440 257 22 0 1795 2051 506135704 506135448 4.050000e-93 353
17 TraesCS7A01G517200 chr2B 91.343 335 27 2 1453 1786 61166209 61166542 3.000000e-124 457
18 TraesCS7A01G517200 chr2B 92.607 257 19 0 1795 2051 61166705 61166961 4.030000e-98 370
19 TraesCS7A01G517200 chr1B 90.746 335 29 2 1453 1786 53850959 53851292 6.500000e-121 446
20 TraesCS7A01G517200 chr1B 92.607 257 19 0 1795 2051 53851455 53851711 4.030000e-98 370
21 TraesCS7A01G517200 chr1A 89.254 335 34 2 1453 1786 31387092 31386759 1.420000e-112 418
22 TraesCS7A01G517200 chr1A 92.218 257 20 0 1795 2051 31386596 31386340 1.870000e-96 364
23 TraesCS7A01G517200 chr4B 87.761 335 36 5 1453 1786 236165935 236165605 4.000000e-103 387
24 TraesCS7A01G517200 chr4B 91.051 257 23 0 1795 2051 236165442 236165186 1.890000e-91 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G517200 chr7A 701530808 701539936 9128 True 16859.000000 16859 100.000000 1 9129 1 chr7A.!!$R1 9128
1 TraesCS7A01G517200 chr7D 611593796 611602948 9152 True 2051.333333 4143 90.639833 1 8801 6 chr7D.!!$R1 8800
2 TraesCS7A01G517200 chr7B 700829401 700838940 9539 True 2350.400000 3701 90.570200 1 9129 5 chr7B.!!$R1 9128
3 TraesCS7A01G517200 chr4A 597815354 597816012 658 False 342.500000 468 91.340500 1453 1956 2 chr4A.!!$F1 503
4 TraesCS7A01G517200 chr6B 506135448 506136200 752 True 407.500000 462 91.541000 1453 2051 2 chr6B.!!$R1 598
5 TraesCS7A01G517200 chr2B 61166209 61166961 752 False 413.500000 457 91.975000 1453 2051 2 chr2B.!!$F1 598
6 TraesCS7A01G517200 chr1B 53850959 53851711 752 False 408.000000 446 91.676500 1453 2051 2 chr1B.!!$F1 598
7 TraesCS7A01G517200 chr1A 31386340 31387092 752 True 391.000000 418 90.736000 1453 2051 2 chr1A.!!$R1 598
8 TraesCS7A01G517200 chr4B 236165186 236165935 749 True 367.500000 387 89.406000 1453 2051 2 chr4B.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.037697 TCACCACCGATCTTTCACCG 60.038 55.000 0.00 0.00 0.00 4.94 F
441 442 0.893727 GTGCACCCTTGTTCCGGAAT 60.894 55.000 22.04 0.00 0.00 3.01 F
1423 1763 1.069823 ACTGCACCTGTCTGTCTTCTG 59.930 52.381 0.00 0.00 0.00 3.02 F
1673 2015 1.150567 CCAAGAAGATCCGCGCTCTG 61.151 60.000 5.56 0.00 0.00 3.35 F
1874 2372 1.200020 GTTCCTGACCAGAAAATGCCG 59.800 52.381 0.00 0.00 0.00 5.69 F
2880 3383 1.462283 CGTTTGCTCATCCTGTGACAG 59.538 52.381 5.42 5.42 32.22 3.51 F
3662 4168 0.511221 CAAAAGCTGCTGCATGTTGC 59.489 50.000 18.42 2.70 45.29 4.17 F
3663 4169 0.601841 AAAAGCTGCTGCATGTTGCC 60.602 50.000 18.42 0.00 44.23 4.52 F
4031 5023 0.681175 ATGCCCTCCAAGTTTGTTGC 59.319 50.000 0.00 0.00 0.00 4.17 F
4618 5613 1.065709 TGGTAATTCTCCGGTCCTTGC 60.066 52.381 0.00 0.00 0.00 4.01 F
5120 6127 1.205893 GGGACTACCAAGACTCAGCTG 59.794 57.143 7.63 7.63 39.85 4.24 F
6162 7171 1.381872 CAACCAACCACCCCCACAA 60.382 57.895 0.00 0.00 0.00 3.33 F
6199 7208 0.178973 AAGCAACCAACTACCCCCAC 60.179 55.000 0.00 0.00 0.00 4.61 F
6201 7210 0.468400 GCAACCAACTACCCCCACAA 60.468 55.000 0.00 0.00 0.00 3.33 F
7817 8876 0.181350 GACCCGAGCTCCATTCCATT 59.819 55.000 8.47 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 2057 0.236187 TCCGTTTGAAAACCGCGATG 59.764 50.000 8.23 0.00 35.51 3.84 R
1853 2351 1.200020 GGCATTTTCTGGTCAGGAACG 59.800 52.381 0.00 0.00 0.00 3.95 R
3204 3708 1.144913 ACACCTTGGTGGCAGTAATGT 59.855 47.619 21.98 0.00 40.22 2.71 R
3662 4168 0.535335 TAACAGGCTAAGCGGTCAGG 59.465 55.000 0.00 0.00 0.00 3.86 R
3663 4169 1.067142 TGTAACAGGCTAAGCGGTCAG 60.067 52.381 0.00 0.00 0.00 3.51 R
3731 4435 1.610886 GGAACCTTATATGCTCCCGCC 60.611 57.143 0.00 0.00 34.43 6.13 R
4861 5859 1.923204 GCACGTATCTCAGCTGAACAG 59.077 52.381 18.85 6.49 0.00 3.16 R
5074 6073 3.942130 AGCTTGTTTTGATTAGCCCAC 57.058 42.857 0.00 0.00 34.19 4.61 R
5953 6960 1.901591 AATGCACAGGGTGAGAACAG 58.098 50.000 0.00 0.00 35.23 3.16 R
6180 7189 0.178973 GTGGGGGTAGTTGGTTGCTT 60.179 55.000 0.00 0.00 0.00 3.91 R
6182 7191 0.468400 TTGTGGGGGTAGTTGGTTGC 60.468 55.000 0.00 0.00 0.00 4.17 R
7289 8348 1.620819 ACGATGAGCACTTCCAAGTCT 59.379 47.619 0.00 0.00 37.08 3.24 R
7487 8546 1.680735 CTGAAGTGGGAGGAGAGATCG 59.319 57.143 0.00 0.00 0.00 3.69 R
8083 9145 2.124983 ACCATGCATCGCGAGCTT 60.125 55.556 24.04 17.82 0.00 3.74 R
8974 10057 1.898863 ACACCCTCCAGCCAGATAAT 58.101 50.000 0.00 0.00 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.390383 GGTGGCGGACTCCTAGTACC 61.390 65.000 0.00 0.00 0.00 3.34
43 44 2.093973 CCTAGTACCAGTGCTCCACAAG 60.094 54.545 0.00 0.00 36.74 3.16
160 161 8.824781 ACTTCTTATTGACATCAAGAATCATCG 58.175 33.333 10.69 4.36 39.47 3.84
166 167 7.525688 TTGACATCAAGAATCATCGTTAGAC 57.474 36.000 0.00 0.00 0.00 2.59
174 175 6.952935 AGAATCATCGTTAGACAGACAAAC 57.047 37.500 0.00 0.00 0.00 2.93
183 184 3.627395 AGACAGACAAACTCACCAACA 57.373 42.857 0.00 0.00 0.00 3.33
189 190 5.036737 CAGACAAACTCACCAACACAAATC 58.963 41.667 0.00 0.00 0.00 2.17
196 197 3.536570 TCACCAACACAAATCTGTCGAA 58.463 40.909 0.00 0.00 31.64 3.71
205 206 5.354234 ACACAAATCTGTCGAAAGTTGAACT 59.646 36.000 11.76 0.00 31.64 3.01
206 207 6.128007 ACACAAATCTGTCGAAAGTTGAACTT 60.128 34.615 11.76 4.45 34.84 2.66
220 221 1.072331 TGAACTTGAGCCTCCAGAACC 59.928 52.381 0.00 0.00 0.00 3.62
255 256 4.056050 GGTAGACACCATTAACTATGCCG 58.944 47.826 0.00 0.00 45.04 5.69
256 257 4.202182 GGTAGACACCATTAACTATGCCGA 60.202 45.833 0.00 0.00 45.04 5.54
270 271 0.944386 TGCCGAGTTCAAGAAGTTGC 59.056 50.000 0.20 3.63 33.23 4.17
281 282 2.814336 CAAGAAGTTGCCTGGTACCTTC 59.186 50.000 14.36 12.97 0.00 3.46
314 315 3.055385 CCCAAACGACCCTCTTATCAAGA 60.055 47.826 0.00 0.00 35.87 3.02
316 317 4.631813 CCAAACGACCCTCTTATCAAGAAG 59.368 45.833 0.00 0.00 37.02 2.85
333 334 5.932303 TCAAGAAGCACTAACCTCACATTAC 59.068 40.000 0.00 0.00 0.00 1.89
386 387 3.591527 TCCAATCACCTAGACACCCAAAT 59.408 43.478 0.00 0.00 0.00 2.32
397 398 2.037871 ACCCAAATTGCACGGTGAC 58.962 52.632 13.29 3.96 0.00 3.67
421 422 0.037697 TCACCACCGATCTTTCACCG 60.038 55.000 0.00 0.00 0.00 4.94
429 430 1.303317 ATCTTTCACCGGTGCACCC 60.303 57.895 30.25 12.55 0.00 4.61
435 436 2.203294 ACCGGTGCACCCTTGTTC 60.203 61.111 29.95 3.46 0.00 3.18
437 438 3.353836 CGGTGCACCCTTGTTCCG 61.354 66.667 29.95 12.12 35.80 4.30
438 439 2.983592 GGTGCACCCTTGTTCCGG 60.984 66.667 26.31 0.00 0.00 5.14
441 442 0.893727 GTGCACCCTTGTTCCGGAAT 60.894 55.000 22.04 0.00 0.00 3.01
444 445 1.886655 GCACCCTTGTTCCGGAATTCT 60.887 52.381 22.04 0.00 0.00 2.40
446 447 3.270877 CACCCTTGTTCCGGAATTCTAG 58.729 50.000 22.04 13.97 0.00 2.43
465 466 2.670939 AGGATGATCTCATGTCGGACA 58.329 47.619 14.01 14.01 36.57 4.02
471 472 3.638627 TGATCTCATGTCGGACAATAGCT 59.361 43.478 15.72 7.00 0.00 3.32
498 499 2.380064 ATCCCTTTGGAAGTGTGCAA 57.620 45.000 0.00 0.00 45.98 4.08
521 776 4.282703 ACTTGGTATAGCCGGGTAGTATTG 59.717 45.833 19.61 9.62 41.21 1.90
543 798 1.519719 CAGCCGGAGAGAAAGAGGG 59.480 63.158 5.05 0.00 0.00 4.30
553 808 3.028130 AGAGAAAGAGGGTAGTGCTAGC 58.972 50.000 8.10 8.10 0.00 3.42
614 869 6.165577 GGCCAAAAATAAACTCATCATGTGT 58.834 36.000 0.00 0.00 0.00 3.72
635 892 1.628846 GAGGGAGGGTGTGTGTGTTAT 59.371 52.381 0.00 0.00 0.00 1.89
637 894 3.454812 GAGGGAGGGTGTGTGTGTTATAT 59.545 47.826 0.00 0.00 0.00 0.86
639 896 3.199071 GGGAGGGTGTGTGTGTTATATCA 59.801 47.826 0.00 0.00 0.00 2.15
640 897 4.141482 GGGAGGGTGTGTGTGTTATATCAT 60.141 45.833 0.00 0.00 0.00 2.45
646 903 9.474313 AGGGTGTGTGTGTTATATCATAAAAAT 57.526 29.630 0.00 0.00 0.00 1.82
683 971 9.574516 AGCAGAAGAACTTATTTTAGGAGAAAA 57.425 29.630 0.00 0.00 0.00 2.29
689 977 9.574516 AGAACTTATTTTAGGAGAAAAAGCAGA 57.425 29.630 0.00 0.00 32.20 4.26
692 980 9.574516 ACTTATTTTAGGAGAAAAAGCAGAAGA 57.425 29.630 0.00 0.00 32.20 2.87
693 981 9.833182 CTTATTTTAGGAGAAAAAGCAGAAGAC 57.167 33.333 0.00 0.00 32.20 3.01
1141 1456 2.156310 GTCTACAACGTAAGCAAACCCG 59.844 50.000 0.00 0.00 45.62 5.28
1166 1481 4.760047 CACCAACCCGCCCTCTCG 62.760 72.222 0.00 0.00 0.00 4.04
1173 1488 4.824515 CCGCCCTCTCGTCTCCCT 62.825 72.222 0.00 0.00 0.00 4.20
1175 1490 3.213402 GCCCTCTCGTCTCCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
1178 1493 3.213402 CTCTCGTCTCCCTCGCCC 61.213 72.222 0.00 0.00 0.00 6.13
1195 1527 4.446413 CCGCCCACCGTACTGGAC 62.446 72.222 10.17 0.00 42.00 4.02
1260 1592 3.449737 TCTCCGTCAGTATTTAGGGTTGG 59.550 47.826 0.00 0.00 0.00 3.77
1266 1602 6.041296 CCGTCAGTATTTAGGGTTGGTATACT 59.959 42.308 2.25 0.00 33.52 2.12
1281 1617 3.256136 GGTATACTAGAGGCAGCGATGTT 59.744 47.826 1.22 0.00 0.00 2.71
1282 1618 4.458295 GGTATACTAGAGGCAGCGATGTTA 59.542 45.833 1.22 0.00 0.00 2.41
1298 1634 4.260620 CGATGTTATTAGCTTCCGTTTGGG 60.261 45.833 0.00 0.00 35.24 4.12
1310 1646 1.754234 GTTTGGGGCTCATGCGGAT 60.754 57.895 0.00 0.00 40.82 4.18
1384 1720 1.077089 GCCTACGGTCGAGCTTTGTC 61.077 60.000 13.48 0.00 0.00 3.18
1394 1734 5.518847 CGGTCGAGCTTTGTCTTCATATAAA 59.481 40.000 13.48 0.00 0.00 1.40
1399 1739 6.313905 CGAGCTTTGTCTTCATATAAACCTGT 59.686 38.462 0.00 0.00 0.00 4.00
1407 1747 7.764443 TGTCTTCATATAAACCTGTCTTACTGC 59.236 37.037 0.00 0.00 0.00 4.40
1410 1750 6.346096 TCATATAAACCTGTCTTACTGCACC 58.654 40.000 0.00 0.00 0.00 5.01
1423 1763 1.069823 ACTGCACCTGTCTGTCTTCTG 59.930 52.381 0.00 0.00 0.00 3.02
1430 1770 4.034510 CACCTGTCTGTCTTCTGTTGTTTC 59.965 45.833 0.00 0.00 0.00 2.78
1432 1772 3.194861 TGTCTGTCTTCTGTTGTTTCCG 58.805 45.455 0.00 0.00 0.00 4.30
1446 1787 3.864243 TGTTTCCGACGGCTTTACATAT 58.136 40.909 9.66 0.00 0.00 1.78
1447 1788 5.008619 TGTTTCCGACGGCTTTACATATA 57.991 39.130 9.66 0.00 0.00 0.86
1448 1789 5.045215 TGTTTCCGACGGCTTTACATATAG 58.955 41.667 9.66 0.00 0.00 1.31
1449 1790 3.928727 TCCGACGGCTTTACATATAGG 57.071 47.619 9.66 0.00 0.00 2.57
1450 1791 3.489355 TCCGACGGCTTTACATATAGGA 58.511 45.455 9.66 0.00 0.00 2.94
1451 1792 3.504906 TCCGACGGCTTTACATATAGGAG 59.495 47.826 9.66 0.00 0.00 3.69
1499 1840 5.493133 TTTGTGGTATGATTAATCACGCC 57.507 39.130 20.19 22.05 40.03 5.68
1508 1849 3.372822 TGATTAATCACGCCGTTTTCTCC 59.627 43.478 14.23 0.00 0.00 3.71
1510 1851 1.892209 AATCACGCCGTTTTCTCCTT 58.108 45.000 0.00 0.00 0.00 3.36
1516 1857 2.164827 ACGCCGTTTTCTCCTTTTGTTT 59.835 40.909 0.00 0.00 0.00 2.83
1634 1976 1.477105 GTGCGTGAACTTTCTTTGCC 58.523 50.000 0.00 0.00 0.00 4.52
1673 2015 1.150567 CCAAGAAGATCCGCGCTCTG 61.151 60.000 5.56 0.00 0.00 3.35
1715 2057 3.006706 GCTGCATACGGAAGCGAC 58.993 61.111 0.00 0.00 38.75 5.19
1853 2351 6.691508 ACTTATTCCAGACTTCCAAAATTGC 58.308 36.000 0.00 0.00 0.00 3.56
1874 2372 1.200020 GTTCCTGACCAGAAAATGCCG 59.800 52.381 0.00 0.00 0.00 5.69
1901 2399 7.112779 TGTCTCAGATGTACTTGTAGATCTCA 58.887 38.462 14.85 9.13 28.92 3.27
1909 2407 8.709386 ATGTACTTGTAGATCTCATGTGAAAC 57.291 34.615 0.00 2.13 37.35 2.78
1987 2485 8.698854 CATGTTTGATTGTGTGGTTATACAAAC 58.301 33.333 0.00 0.00 40.56 2.93
2010 2508 6.591001 ACAAAGATAAATTGTGGGCACTTTT 58.409 32.000 0.00 0.00 39.43 2.27
2086 2585 1.805943 TGCAAGTGGACACATCAATCG 59.194 47.619 5.14 0.00 0.00 3.34
2259 2758 6.374333 TGAAGTATTGAGGCCTTCATGTTTAC 59.626 38.462 6.77 2.93 39.58 2.01
2319 2818 4.874970 ACATGAAGAAAAGGTCAACATGC 58.125 39.130 0.00 0.00 41.51 4.06
2367 2866 7.568349 TCTCAGTGCAGATATTAAAGGTGATT 58.432 34.615 0.00 0.00 0.00 2.57
2537 3038 8.947055 ATAGTTTGCTTTCTGAATTTTGTGTT 57.053 26.923 0.00 0.00 0.00 3.32
2723 3224 2.203070 GGTTGCGCCGATGGATCT 60.203 61.111 4.18 0.00 0.00 2.75
2788 3289 2.166829 CAACCATGAAATTCGGGGTGA 58.833 47.619 14.09 0.00 40.62 4.02
2831 3332 4.552767 CGAACAGGTGATTTTGTCTGACAC 60.553 45.833 10.56 0.00 0.00 3.67
2843 3346 8.630278 ATTTTGTCTGACACGATATACAGTAC 57.370 34.615 10.56 0.00 0.00 2.73
2850 3353 6.558009 TGACACGATATACAGTACAACCTTC 58.442 40.000 0.00 0.00 0.00 3.46
2880 3383 1.462283 CGTTTGCTCATCCTGTGACAG 59.538 52.381 5.42 5.42 32.22 3.51
2882 3385 3.664107 GTTTGCTCATCCTGTGACAGTA 58.336 45.455 12.15 0.00 32.22 2.74
2924 3427 5.560724 TCCTGGTTTATTCAAGTCCTCAAG 58.439 41.667 0.00 0.00 0.00 3.02
2927 3430 6.265422 CCTGGTTTATTCAAGTCCTCAAGTTT 59.735 38.462 0.00 0.00 0.00 2.66
2992 3495 5.661458 GTTAATTCGGAGATCCAGTTCAGA 58.339 41.667 0.00 0.00 35.04 3.27
3026 3529 7.048629 TGACACATTCTTTTTGGCTTTATGA 57.951 32.000 0.00 0.00 0.00 2.15
3067 3571 7.707893 AGTTTTTGGAGATTTGACTTGTCAATG 59.292 33.333 15.67 0.00 0.00 2.82
3081 3585 7.502226 TGACTTGTCAATGAAACCTTTACTGAT 59.498 33.333 0.44 0.00 0.00 2.90
3083 3587 8.695456 ACTTGTCAATGAAACCTTTACTGATTT 58.305 29.630 0.00 0.00 0.00 2.17
3088 3592 6.811253 ATGAAACCTTTACTGATTTGCGTA 57.189 33.333 0.00 0.00 0.00 4.42
3180 3684 4.891168 TGTGGAAATACGGATACAGAGCTA 59.109 41.667 0.00 0.00 0.00 3.32
3196 3700 7.617041 ACAGAGCTAAATTTTATGACCAGTC 57.383 36.000 0.00 0.00 0.00 3.51
3197 3701 7.168219 ACAGAGCTAAATTTTATGACCAGTCA 58.832 34.615 2.42 2.42 44.59 3.41
3198 3702 7.335422 ACAGAGCTAAATTTTATGACCAGTCAG 59.665 37.037 6.63 0.00 43.61 3.51
3199 3703 7.335422 CAGAGCTAAATTTTATGACCAGTCAGT 59.665 37.037 6.63 0.00 43.61 3.41
3200 3704 8.540388 AGAGCTAAATTTTATGACCAGTCAGTA 58.460 33.333 6.63 0.00 43.61 2.74
3201 3705 8.723942 AGCTAAATTTTATGACCAGTCAGTAG 57.276 34.615 6.63 1.50 43.61 2.57
3202 3706 8.540388 AGCTAAATTTTATGACCAGTCAGTAGA 58.460 33.333 6.63 0.00 43.61 2.59
3203 3707 9.331282 GCTAAATTTTATGACCAGTCAGTAGAT 57.669 33.333 6.63 0.00 43.61 1.98
3239 3743 7.310361 CCACCAAGGTGTTTTTCATGGTTATAT 60.310 37.037 17.36 0.00 44.02 0.86
3268 3772 4.229304 TGACTCTCCCTGTTTGAAACAA 57.771 40.909 12.26 0.00 41.61 2.83
3332 3836 5.672321 GCTTCTACATGTCAAGCTTAAGTGC 60.672 44.000 25.14 11.57 39.61 4.40
3591 4096 9.521841 TTCACATTATTGGTAATTTGGTAGTGA 57.478 29.630 0.00 0.00 31.77 3.41
3592 4097 9.173021 TCACATTATTGGTAATTTGGTAGTGAG 57.827 33.333 0.00 0.00 31.77 3.51
3593 4098 8.405531 CACATTATTGGTAATTTGGTAGTGAGG 58.594 37.037 0.00 0.00 28.73 3.86
3594 4099 7.559897 ACATTATTGGTAATTTGGTAGTGAGGG 59.440 37.037 0.00 0.00 0.00 4.30
3595 4100 5.789574 ATTGGTAATTTGGTAGTGAGGGA 57.210 39.130 0.00 0.00 0.00 4.20
3596 4101 4.563140 TGGTAATTTGGTAGTGAGGGAC 57.437 45.455 0.00 0.00 0.00 4.46
3597 4102 3.911260 TGGTAATTTGGTAGTGAGGGACA 59.089 43.478 0.00 0.00 0.00 4.02
3598 4103 4.351407 TGGTAATTTGGTAGTGAGGGACAA 59.649 41.667 0.00 0.00 0.00 3.18
3599 4104 5.163077 TGGTAATTTGGTAGTGAGGGACAAA 60.163 40.000 0.00 0.00 35.76 2.83
3600 4105 5.771165 GGTAATTTGGTAGTGAGGGACAAAA 59.229 40.000 0.00 0.00 35.06 2.44
3601 4106 5.784578 AATTTGGTAGTGAGGGACAAAAC 57.215 39.130 0.00 0.00 35.06 2.43
3604 4109 2.781174 TGGTAGTGAGGGACAAAACCTT 59.219 45.455 0.00 0.00 38.79 3.50
3620 4125 9.989869 GACAAAACCTTTGTATCTTATTAGCTC 57.010 33.333 4.82 0.00 31.96 4.09
3630 4135 7.205992 TGTATCTTATTAGCTCTTGAGCTGTG 58.794 38.462 28.97 16.22 45.81 3.66
3662 4168 0.511221 CAAAAGCTGCTGCATGTTGC 59.489 50.000 18.42 2.70 45.29 4.17
3663 4169 0.601841 AAAAGCTGCTGCATGTTGCC 60.602 50.000 18.42 0.00 44.23 4.52
3691 4394 4.267928 CGCTTAGCCTGTTACATAGAACAC 59.732 45.833 0.00 0.00 34.40 3.32
3771 4762 2.123342 CTCCTAGAATCGAGCTTTGCG 58.877 52.381 0.00 0.00 0.00 4.85
3774 4765 0.810031 TAGAATCGAGCTTTGCGGCC 60.810 55.000 0.00 0.00 0.00 6.13
3811 4802 7.446001 ACAAAATCAGCCAAGAAAAACAAAA 57.554 28.000 0.00 0.00 0.00 2.44
3829 4820 7.581213 AACAAAATCAATACTGGTGTGAGAA 57.419 32.000 0.00 0.00 0.00 2.87
3830 4821 7.765695 ACAAAATCAATACTGGTGTGAGAAT 57.234 32.000 0.00 0.00 0.00 2.40
3832 4823 8.730680 ACAAAATCAATACTGGTGTGAGAATAC 58.269 33.333 0.00 0.00 0.00 1.89
3847 4839 7.113965 GTGTGAGAATACTTTGCTTTGACAATG 59.886 37.037 0.00 0.00 0.00 2.82
3862 4854 7.975616 GCTTTGACAATGAGATTAAATTAGCCA 59.024 33.333 5.31 0.00 0.00 4.75
3873 4865 8.644374 AGATTAAATTAGCCACAACACCTTAA 57.356 30.769 0.00 0.00 0.00 1.85
3877 4869 9.699703 TTAAATTAGCCACAACACCTTAATTTC 57.300 29.630 3.99 0.00 31.19 2.17
3879 4871 2.556622 AGCCACAACACCTTAATTTCGG 59.443 45.455 0.00 0.00 0.00 4.30
3880 4872 2.295070 GCCACAACACCTTAATTTCGGT 59.705 45.455 0.00 0.00 0.00 4.69
3978 4970 4.232221 GTCTGTTACGATTTCGAAGTGGA 58.768 43.478 9.58 0.00 43.02 4.02
4010 5002 2.093658 CACCTCGGTGCATAAGGTAACT 60.094 50.000 14.91 0.00 44.87 2.24
4031 5023 0.681175 ATGCCCTCCAAGTTTGTTGC 59.319 50.000 0.00 0.00 0.00 4.17
4046 5038 4.688511 TTGTTGCGTCTGTACTTTTGTT 57.311 36.364 0.00 0.00 0.00 2.83
4228 5220 3.758554 ACACCTGTTATCATTTCCTGCAC 59.241 43.478 0.00 0.00 0.00 4.57
4261 5254 8.386606 GTCATCTCAAAGTGCTATTGAAGTAAG 58.613 37.037 2.05 0.00 36.43 2.34
4267 5260 7.385205 TCAAAGTGCTATTGAAGTAAGAGTGTC 59.615 37.037 0.00 0.00 34.04 3.67
4286 5279 2.661866 ACTTCACGCCGCACACTC 60.662 61.111 0.00 0.00 0.00 3.51
4322 5315 4.836125 TTCCTGCATGTTTGTCTTCTTC 57.164 40.909 0.00 0.00 0.00 2.87
4330 5323 5.755813 CATGTTTGTCTTCTTCTCAGGTTG 58.244 41.667 0.00 0.00 0.00 3.77
4365 5359 7.621832 TTCGAGCAAAATGAGTTTATGTTTG 57.378 32.000 0.00 0.00 33.35 2.93
4454 5449 2.437850 GCATGTGGCAAAAAGAGCG 58.562 52.632 0.00 0.00 43.97 5.03
4475 5470 5.179555 AGCGAAAAAGCTTAGAGTAAAGGTG 59.820 40.000 0.00 0.00 46.80 4.00
4524 5519 4.737054 CCTTCCGTTTCATCATTTCCTTG 58.263 43.478 0.00 0.00 0.00 3.61
4527 5522 5.119931 TCCGTTTCATCATTTCCTTGTTG 57.880 39.130 0.00 0.00 0.00 3.33
4528 5523 4.824537 TCCGTTTCATCATTTCCTTGTTGA 59.175 37.500 0.00 0.00 0.00 3.18
4609 5604 5.964758 TGCATTTGATTGTGGTAATTCTCC 58.035 37.500 0.00 0.00 0.00 3.71
4618 5613 1.065709 TGGTAATTCTCCGGTCCTTGC 60.066 52.381 0.00 0.00 0.00 4.01
4623 5618 3.864789 ATTCTCCGGTCCTTGCAATAT 57.135 42.857 0.00 0.00 0.00 1.28
4787 5785 3.149196 ACCAGTATTCTGTGCACCTTTG 58.851 45.455 15.69 2.09 39.82 2.77
4808 5806 5.499139 TGCTAGTGTTGAAAAGAAACCAG 57.501 39.130 0.00 0.00 0.00 4.00
4822 5820 9.803315 GAAAAGAAACCAGAAACTGTTATCTTT 57.197 29.630 0.00 0.00 0.00 2.52
4861 5859 6.476706 GCTTATTTACCAATGGAATCAACTGC 59.523 38.462 6.16 0.00 0.00 4.40
4914 5912 4.915085 GTGTAATGTTGTTACATGCCACAC 59.085 41.667 4.20 11.92 44.14 3.82
5001 5999 2.552599 TCGTCAGAGACTGAGTCACT 57.447 50.000 15.86 11.24 41.46 3.41
5043 6042 7.433719 TGTTTTTGTAATCTGAATGTTTGACCG 59.566 33.333 0.00 0.00 0.00 4.79
5051 6050 8.644318 AATCTGAATGTTTGACCGTATACTAC 57.356 34.615 0.56 0.00 0.00 2.73
5074 6073 7.076842 ACAAGAATGTATTGAATTCTCACCG 57.923 36.000 7.05 0.00 42.26 4.94
5086 6093 1.271856 TCTCACCGTGGGCTAATCAA 58.728 50.000 0.00 0.00 0.00 2.57
5120 6127 1.205893 GGGACTACCAAGACTCAGCTG 59.794 57.143 7.63 7.63 39.85 4.24
5138 6145 9.757227 ACTCAGCTGTTAAATGATAGAAGTATC 57.243 33.333 14.67 0.00 36.34 2.24
5294 6301 4.680708 CGTGGTAGTTACATTGATGGCTCT 60.681 45.833 0.00 0.00 0.00 4.09
5443 6450 8.928733 AGCTGCAATTTATTTAAACTGTGATTG 58.071 29.630 1.02 0.00 0.00 2.67
5489 6496 3.019564 CCTGCAGGTCTGGGATTTTAAG 58.980 50.000 25.53 0.00 0.00 1.85
5953 6960 4.864704 TTGGTAGGCTTTCATTGTTTCC 57.135 40.909 0.00 0.00 0.00 3.13
6080 7089 9.683069 CACATCTCATTTAGGCAAATAAATACC 57.317 33.333 0.00 0.00 34.38 2.73
6095 7104 8.522830 CAAATAAATACCACTTTCAGTCCACAT 58.477 33.333 0.00 0.00 0.00 3.21
6138 7147 2.872245 CTCAAATTCCATACCGTCGCAT 59.128 45.455 0.00 0.00 0.00 4.73
6157 7166 2.802724 GCAACCAACCAACCACCCC 61.803 63.158 0.00 0.00 0.00 4.95
6161 7170 2.280416 CAACCAACCACCCCCACA 59.720 61.111 0.00 0.00 0.00 4.17
6162 7171 1.381872 CAACCAACCACCCCCACAA 60.382 57.895 0.00 0.00 0.00 3.33
6168 7177 2.292192 CCAACCACCCCCACAATCTAAT 60.292 50.000 0.00 0.00 0.00 1.73
6170 7179 4.570933 CCAACCACCCCCACAATCTAATAA 60.571 45.833 0.00 0.00 0.00 1.40
6173 7182 5.020795 ACCACCCCCACAATCTAATAAAAC 58.979 41.667 0.00 0.00 0.00 2.43
6174 7183 4.097286 CCACCCCCACAATCTAATAAAACG 59.903 45.833 0.00 0.00 0.00 3.60
6176 7185 3.697045 CCCCCACAATCTAATAAAACGCA 59.303 43.478 0.00 0.00 0.00 5.24
6177 7186 4.340950 CCCCCACAATCTAATAAAACGCAT 59.659 41.667 0.00 0.00 0.00 4.73
6179 7188 4.739716 CCCACAATCTAATAAAACGCATGC 59.260 41.667 7.91 7.91 0.00 4.06
6180 7189 5.339177 CCACAATCTAATAAAACGCATGCA 58.661 37.500 19.57 0.00 0.00 3.96
6181 7190 5.804473 CCACAATCTAATAAAACGCATGCAA 59.196 36.000 19.57 0.00 0.00 4.08
6182 7191 6.020440 CCACAATCTAATAAAACGCATGCAAG 60.020 38.462 19.57 4.59 0.00 4.01
6183 7192 5.516339 ACAATCTAATAAAACGCATGCAAGC 59.484 36.000 19.57 3.25 0.00 4.01
6184 7193 4.693538 TCTAATAAAACGCATGCAAGCA 57.306 36.364 19.57 0.00 0.00 3.91
6187 7196 1.777101 TAAAACGCATGCAAGCAACC 58.223 45.000 19.57 0.00 0.00 3.77
6188 7197 0.179089 AAAACGCATGCAAGCAACCA 60.179 45.000 19.57 0.00 0.00 3.67
6189 7198 0.179089 AAACGCATGCAAGCAACCAA 60.179 45.000 19.57 0.00 0.00 3.67
6190 7199 0.875474 AACGCATGCAAGCAACCAAC 60.875 50.000 19.57 0.00 0.00 3.77
6191 7200 1.007038 CGCATGCAAGCAACCAACT 60.007 52.632 19.57 0.00 0.00 3.16
6193 7202 1.701704 GCATGCAAGCAACCAACTAC 58.298 50.000 14.21 0.00 0.00 2.73
6194 7203 1.669795 GCATGCAAGCAACCAACTACC 60.670 52.381 14.21 0.00 0.00 3.18
6196 7205 0.825840 TGCAAGCAACCAACTACCCC 60.826 55.000 0.00 0.00 0.00 4.95
6198 7207 0.178975 CAAGCAACCAACTACCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
6199 7208 0.178973 AAGCAACCAACTACCCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
6200 7209 1.151908 GCAACCAACTACCCCCACA 59.848 57.895 0.00 0.00 0.00 4.17
6201 7210 0.468400 GCAACCAACTACCCCCACAA 60.468 55.000 0.00 0.00 0.00 3.33
6202 7211 1.825641 GCAACCAACTACCCCCACAAT 60.826 52.381 0.00 0.00 0.00 2.71
6203 7212 2.167662 CAACCAACTACCCCCACAATC 58.832 52.381 0.00 0.00 0.00 2.67
6204 7213 1.755200 ACCAACTACCCCCACAATCT 58.245 50.000 0.00 0.00 0.00 2.40
6205 7214 2.923908 ACCAACTACCCCCACAATCTA 58.076 47.619 0.00 0.00 0.00 1.98
6206 7215 3.261962 ACCAACTACCCCCACAATCTAA 58.738 45.455 0.00 0.00 0.00 2.10
6207 7216 3.658705 ACCAACTACCCCCACAATCTAAA 59.341 43.478 0.00 0.00 0.00 1.85
6208 7217 4.106663 ACCAACTACCCCCACAATCTAAAA 59.893 41.667 0.00 0.00 0.00 1.52
6209 7218 5.081032 CCAACTACCCCCACAATCTAAAAA 58.919 41.667 0.00 0.00 0.00 1.94
6229 7238 6.966534 AAAAAGATGAGTTGACTGGACAAT 57.033 33.333 0.00 0.00 32.36 2.71
6230 7239 5.954296 AAAGATGAGTTGACTGGACAATG 57.046 39.130 0.00 0.00 32.36 2.82
6231 7240 3.341823 AGATGAGTTGACTGGACAATGC 58.658 45.455 0.00 0.00 32.36 3.56
6232 7241 2.936919 TGAGTTGACTGGACAATGCT 57.063 45.000 0.00 0.00 32.36 3.79
6233 7242 3.213206 TGAGTTGACTGGACAATGCTT 57.787 42.857 0.00 0.00 32.36 3.91
6278 7287 9.739276 ATTTCCACTCTGTTGATAAAACTATGA 57.261 29.630 0.00 0.00 0.00 2.15
6412 7421 3.168035 TCATTGTGGCCCTTATGTTGT 57.832 42.857 0.00 0.00 0.00 3.32
6421 7432 2.230992 GCCCTTATGTTGTTCATGCACA 59.769 45.455 0.00 0.00 37.91 4.57
6427 7438 2.221169 TGTTGTTCATGCACAGAGGAC 58.779 47.619 0.00 0.00 0.00 3.85
6434 7446 2.369860 TCATGCACAGAGGACAGTTTCT 59.630 45.455 0.00 0.00 0.00 2.52
6438 7450 2.869636 GCACAGAGGACAGTTTCTCAGG 60.870 54.545 7.38 2.91 32.76 3.86
6440 7452 3.260380 CACAGAGGACAGTTTCTCAGGAT 59.740 47.826 7.38 0.00 32.76 3.24
6502 7514 5.534207 TGCTTTCCATGAAGTTGAATGTT 57.466 34.783 0.00 0.00 0.00 2.71
6593 7630 8.561212 GCCATTATGGATAACAAACATACGTAA 58.439 33.333 16.46 0.00 40.96 3.18
6755 7792 1.587946 GTGCTTTTGCCAACTGTTTCG 59.412 47.619 0.00 0.00 46.87 3.46
6855 7892 8.625786 TGTCATAATGGATCATCAAATACCAG 57.374 34.615 0.00 0.00 34.08 4.00
6994 8032 3.134574 ACGAATCCTGTTACCTTGCAA 57.865 42.857 0.00 0.00 0.00 4.08
7044 8082 7.067251 AGAGAATTAGGCGGTGTATATAGTAGC 59.933 40.741 0.00 0.00 0.00 3.58
7054 8092 7.574404 GCGGTGTATATAGTAGCATGTGTAGAA 60.574 40.741 0.00 0.00 0.00 2.10
7073 8111 7.348808 GTAGAAGAACTACTTTAACTGTGGC 57.651 40.000 0.00 0.00 45.56 5.01
7097 8135 8.598075 GGCTGACAATATTTTGATGAACATTTC 58.402 33.333 2.69 0.00 36.64 2.17
7098 8136 9.142515 GCTGACAATATTTTGATGAACATTTCA 57.857 29.630 2.69 0.00 38.97 2.69
7187 8246 4.959210 ACTACAGTAGGAAGTGCTGATCAT 59.041 41.667 12.42 0.00 41.25 2.45
7203 8262 5.334957 GCTGATCATTGCTATCACTTGATGG 60.335 44.000 0.00 0.02 36.05 3.51
7295 8354 2.190325 CGTAAGCCCGACTAGACTTG 57.810 55.000 0.00 0.00 0.00 3.16
7406 8465 1.635487 CCCTCAGTTCCATCCCTTTCA 59.365 52.381 0.00 0.00 0.00 2.69
7512 8571 0.900647 CTCCTCCCACTTCAGTCGGT 60.901 60.000 0.00 0.00 0.00 4.69
7670 8729 3.762288 TCGTCATAGTAAGCACTGACCTT 59.238 43.478 0.00 0.00 36.14 3.50
7730 8789 1.343069 AAGGCCTATCTCCGTCATCC 58.657 55.000 5.16 0.00 0.00 3.51
7811 8870 1.201429 AACCAAGACCCGAGCTCCAT 61.201 55.000 8.47 0.00 0.00 3.41
7817 8876 0.181350 GACCCGAGCTCCATTCCATT 59.819 55.000 8.47 0.00 0.00 3.16
7915 8974 9.994432 GAAATTGTTTCTGAAGGTATGTGATAG 57.006 33.333 0.00 0.00 36.73 2.08
7916 8975 9.520515 AAATTGTTTCTGAAGGTATGTGATAGT 57.479 29.630 0.00 0.00 0.00 2.12
7926 8988 9.778741 TGAAGGTATGTGATAGTATTTTCCATC 57.221 33.333 0.00 0.00 0.00 3.51
7942 9004 7.610580 TTTTCCATCTTAAACCCATTGAGTT 57.389 32.000 0.00 0.00 0.00 3.01
7954 9016 3.573967 CCCATTGAGTTGGTGCTTAAAGT 59.426 43.478 0.00 0.00 34.77 2.66
8083 9145 5.914635 GCAGAAGATCGACAAAATGTTTCAA 59.085 36.000 0.00 0.00 0.00 2.69
8178 9241 8.512138 GTTTGCCAAATGAACTAGTGTTATACT 58.488 33.333 0.00 0.00 43.56 2.12
8231 9296 4.323417 ACCTCAATTCGCTAACATTGTCA 58.677 39.130 0.00 0.00 32.96 3.58
8245 9310 5.745312 ACATTGTCATCACCTAGTTGAGA 57.255 39.130 0.00 0.00 0.00 3.27
8250 9315 8.517878 CATTGTCATCACCTAGTTGAGATTTTT 58.482 33.333 0.00 0.00 0.00 1.94
8282 9353 9.926751 CACTATATTGCTGTAGAAAATGACTTG 57.073 33.333 0.00 0.00 0.00 3.16
8311 9382 4.310769 TGCAGCTTCTTCTGAACTCTTAC 58.689 43.478 0.00 0.00 36.19 2.34
8421 9497 0.601558 TTCTGCTGTACCTCACCGTC 59.398 55.000 0.00 0.00 0.00 4.79
8423 9499 0.603569 CTGCTGTACCTCACCGTCTT 59.396 55.000 0.00 0.00 0.00 3.01
8495 9573 1.002430 GACCACAGATTGTGCTCCTGA 59.998 52.381 3.72 0.00 46.51 3.86
8571 9649 4.697352 AGCACTGTTCAGCGAGAAATATTT 59.303 37.500 0.00 0.00 38.13 1.40
8611 9690 1.743394 GTTAGGCGAAACATCCCCAAG 59.257 52.381 0.00 0.00 0.00 3.61
8619 9698 4.674362 GCGAAACATCCCCAAGTGTTTATC 60.674 45.833 3.75 0.00 45.59 1.75
8685 9767 7.040961 CGGTGTTTTGACTTCTAAAATCCCTTA 60.041 37.037 0.00 0.00 30.62 2.69
8686 9768 8.297426 GGTGTTTTGACTTCTAAAATCCCTTAG 58.703 37.037 0.00 0.00 30.62 2.18
8788 9871 5.062528 TGAAAAACAAATGGATTCCAAGCC 58.937 37.500 9.98 0.00 36.95 4.35
8789 9872 4.980339 AAAACAAATGGATTCCAAGCCT 57.020 36.364 9.98 0.00 36.95 4.58
8801 9884 4.772886 TTCCAAGCCTAGGATTAAGGTC 57.227 45.455 12.92 0.00 36.43 3.85
8802 9885 3.046374 TCCAAGCCTAGGATTAAGGTCC 58.954 50.000 12.92 0.00 36.43 4.46
8803 9886 2.106684 CCAAGCCTAGGATTAAGGTCCC 59.893 54.545 12.92 0.00 39.17 4.46
8804 9887 2.777692 CAAGCCTAGGATTAAGGTCCCA 59.222 50.000 12.92 0.00 39.17 4.37
8805 9888 3.145559 AGCCTAGGATTAAGGTCCCAA 57.854 47.619 14.75 0.00 39.17 4.12
8806 9889 2.778270 AGCCTAGGATTAAGGTCCCAAC 59.222 50.000 14.75 0.00 39.17 3.77
8808 9891 3.971971 GCCTAGGATTAAGGTCCCAACTA 59.028 47.826 14.75 0.00 39.17 2.24
8809 9892 4.202336 GCCTAGGATTAAGGTCCCAACTAC 60.202 50.000 14.75 0.00 39.17 2.73
8810 9893 5.217400 CCTAGGATTAAGGTCCCAACTACT 58.783 45.833 1.05 0.00 39.17 2.57
8811 9894 6.379579 CCTAGGATTAAGGTCCCAACTACTA 58.620 44.000 1.05 0.00 39.17 1.82
8813 9896 4.967442 AGGATTAAGGTCCCAACTACTACC 59.033 45.833 0.00 0.00 39.17 3.18
8814 9897 4.202192 GGATTAAGGTCCCAACTACTACCG 60.202 50.000 0.00 0.00 37.09 4.02
8815 9898 0.900421 AAGGTCCCAACTACTACCGC 59.100 55.000 0.00 0.00 37.09 5.68
8816 9899 0.040794 AGGTCCCAACTACTACCGCT 59.959 55.000 0.00 0.00 37.09 5.52
8817 9900 0.900421 GGTCCCAACTACTACCGCTT 59.100 55.000 0.00 0.00 0.00 4.68
8818 9901 1.405121 GGTCCCAACTACTACCGCTTG 60.405 57.143 0.00 0.00 0.00 4.01
8819 9902 1.274447 GTCCCAACTACTACCGCTTGT 59.726 52.381 0.00 0.00 0.00 3.16
8820 9903 2.493278 GTCCCAACTACTACCGCTTGTA 59.507 50.000 0.00 0.00 0.00 2.41
8831 9914 3.895232 ACCGCTTGTAGAATGATGACT 57.105 42.857 0.00 0.00 0.00 3.41
8833 9916 5.537300 ACCGCTTGTAGAATGATGACTAT 57.463 39.130 0.00 0.00 0.00 2.12
8835 9918 5.755375 ACCGCTTGTAGAATGATGACTATTG 59.245 40.000 0.00 0.00 0.00 1.90
8837 9920 5.985530 CGCTTGTAGAATGATGACTATTGGA 59.014 40.000 0.00 0.00 0.00 3.53
8838 9921 6.648310 CGCTTGTAGAATGATGACTATTGGAT 59.352 38.462 0.00 0.00 0.00 3.41
8839 9922 7.359849 CGCTTGTAGAATGATGACTATTGGATG 60.360 40.741 0.00 0.00 0.00 3.51
8840 9923 7.572724 GCTTGTAGAATGATGACTATTGGATGC 60.573 40.741 0.00 0.00 0.00 3.91
8841 9924 7.071069 TGTAGAATGATGACTATTGGATGCT 57.929 36.000 0.00 0.00 0.00 3.79
8843 9926 5.314529 AGAATGATGACTATTGGATGCTGG 58.685 41.667 0.00 0.00 0.00 4.85
8844 9927 4.987963 ATGATGACTATTGGATGCTGGA 57.012 40.909 0.00 0.00 0.00 3.86
8846 9929 5.114764 TGATGACTATTGGATGCTGGAAA 57.885 39.130 0.00 0.00 0.00 3.13
8847 9930 5.508567 TGATGACTATTGGATGCTGGAAAA 58.491 37.500 0.00 0.00 0.00 2.29
8849 9932 5.840243 TGACTATTGGATGCTGGAAAATG 57.160 39.130 0.00 0.00 0.00 2.32
8850 9933 5.508567 TGACTATTGGATGCTGGAAAATGA 58.491 37.500 0.00 0.00 0.00 2.57
8852 9935 7.289310 TGACTATTGGATGCTGGAAAATGATA 58.711 34.615 0.00 0.00 0.00 2.15
8853 9936 7.946219 TGACTATTGGATGCTGGAAAATGATAT 59.054 33.333 0.00 0.00 0.00 1.63
8855 9938 8.168725 ACTATTGGATGCTGGAAAATGATATCT 58.831 33.333 3.98 0.00 0.00 1.98
8857 9940 7.750229 TTGGATGCTGGAAAATGATATCTAC 57.250 36.000 3.98 0.00 0.00 2.59
8858 9941 6.840527 TGGATGCTGGAAAATGATATCTACA 58.159 36.000 3.98 0.00 0.00 2.74
8859 9942 7.289310 TGGATGCTGGAAAATGATATCTACAA 58.711 34.615 3.98 0.00 0.00 2.41
8860 9943 7.446319 TGGATGCTGGAAAATGATATCTACAAG 59.554 37.037 3.98 0.00 0.00 3.16
8862 9945 9.494271 GATGCTGGAAAATGATATCTACAAGTA 57.506 33.333 3.98 0.00 0.00 2.24
8864 9947 8.264347 TGCTGGAAAATGATATCTACAAGTACA 58.736 33.333 3.98 0.00 0.00 2.90
8865 9948 9.277783 GCTGGAAAATGATATCTACAAGTACAT 57.722 33.333 3.98 0.00 0.00 2.29
8897 9980 8.719560 ATGCTGCAAGAATATAGATAGTCATG 57.280 34.615 6.36 0.00 34.07 3.07
8920 10003 4.813750 AAAAATGCTGCAAGAATAGCCT 57.186 36.364 6.36 0.00 39.15 4.58
8969 10052 9.599866 TTATCTGGTAGTTTGATGAGTTATGTG 57.400 33.333 0.00 0.00 0.00 3.21
8970 10053 5.874810 TCTGGTAGTTTGATGAGTTATGTGC 59.125 40.000 0.00 0.00 0.00 4.57
8972 10055 6.941857 TGGTAGTTTGATGAGTTATGTGCTA 58.058 36.000 0.00 0.00 0.00 3.49
8974 10057 8.700973 TGGTAGTTTGATGAGTTATGTGCTATA 58.299 33.333 0.00 0.00 0.00 1.31
9003 10086 1.879575 TGGAGGGTGTTCCAGGATAG 58.120 55.000 0.00 0.00 42.24 2.08
9014 10097 5.814705 GTGTTCCAGGATAGTCTTCATCTTG 59.185 44.000 0.00 0.00 31.26 3.02
9015 10098 4.679373 TCCAGGATAGTCTTCATCTTGC 57.321 45.455 0.00 0.00 30.36 4.01
9057 10140 6.536941 GCTTTTCCTTTTGAACATTGGTTGTA 59.463 34.615 0.00 0.00 37.68 2.41
9072 10155 2.224548 GGTTGTAAGCTGGAGGAACTGT 60.225 50.000 0.00 0.00 41.55 3.55
9079 10162 1.334869 GCTGGAGGAACTGTTTGTGTG 59.665 52.381 0.00 0.00 41.55 3.82
9088 10171 2.288666 ACTGTTTGTGTGCTGTACCTG 58.711 47.619 0.00 0.00 0.00 4.00
9091 10174 2.093181 TGTTTGTGTGCTGTACCTGACT 60.093 45.455 0.00 0.00 0.00 3.41
9094 10177 3.592898 TGTGTGCTGTACCTGACTATG 57.407 47.619 0.00 0.00 0.00 2.23
9108 10191 4.197750 CTGACTATGCAGGCATCTTTCTT 58.802 43.478 10.48 0.00 39.78 2.52
9123 10206 2.361610 CTTGCAATGGAGCCGGGT 60.362 61.111 5.45 5.45 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.739561 CACTGGTACTAGGAGTCCGC 59.260 60.000 11.30 0.00 0.00 5.54
16 17 0.739561 GCACTGGTACTAGGAGTCCG 59.260 60.000 11.30 0.00 0.00 4.79
160 161 4.873827 TGTTGGTGAGTTTGTCTGTCTAAC 59.126 41.667 0.00 0.00 33.31 2.34
166 167 4.433186 TTTGTGTTGGTGAGTTTGTCTG 57.567 40.909 0.00 0.00 0.00 3.51
174 175 3.130633 TCGACAGATTTGTGTTGGTGAG 58.869 45.455 0.00 0.00 37.76 3.51
183 184 6.093495 TCAAGTTCAACTTTCGACAGATTTGT 59.907 34.615 5.40 0.00 36.03 2.83
189 190 3.303395 GGCTCAAGTTCAACTTTCGACAG 60.303 47.826 0.00 0.00 36.03 3.51
196 197 2.439507 TCTGGAGGCTCAAGTTCAACTT 59.560 45.455 18.32 0.00 39.39 2.66
205 206 1.376466 GCAGGTTCTGGAGGCTCAA 59.624 57.895 17.69 3.56 31.21 3.02
206 207 2.596851 GGCAGGTTCTGGAGGCTCA 61.597 63.158 17.69 1.59 31.21 4.26
220 221 2.609459 GTGTCTACCGAATCATTGGCAG 59.391 50.000 0.00 0.00 32.70 4.85
270 271 1.657804 AGGGTCTTGAAGGTACCAGG 58.342 55.000 15.94 0.00 34.83 4.45
281 282 0.323629 TCGTTTGGGCTAGGGTCTTG 59.676 55.000 0.00 0.00 0.00 3.02
314 315 7.553044 GGATTTAGTAATGTGAGGTTAGTGCTT 59.447 37.037 0.00 0.00 0.00 3.91
316 317 6.821665 TGGATTTAGTAATGTGAGGTTAGTGC 59.178 38.462 0.00 0.00 0.00 4.40
333 334 9.107177 GCCTATGAATGAGTATGATGGATTTAG 57.893 37.037 0.00 0.00 0.00 1.85
386 387 1.663173 TGATCTCGTCACCGTGCAA 59.337 52.632 0.00 0.00 35.01 4.08
405 406 4.201951 CCGGTGAAAGATCGGTGG 57.798 61.111 0.00 0.00 39.04 4.61
418 419 2.203294 GAACAAGGGTGCACCGGT 60.203 61.111 29.08 22.78 46.96 5.28
421 422 2.969300 TTCCGGAACAAGGGTGCACC 62.969 60.000 28.57 28.57 40.67 5.01
422 423 0.893727 ATTCCGGAACAAGGGTGCAC 60.894 55.000 21.56 8.80 0.00 4.57
429 430 5.023533 TCATCCTAGAATTCCGGAACAAG 57.976 43.478 21.56 13.75 0.00 3.16
435 436 5.046735 ACATGAGATCATCCTAGAATTCCGG 60.047 44.000 0.00 0.00 33.61 5.14
437 438 6.098679 CGACATGAGATCATCCTAGAATTCC 58.901 44.000 0.00 0.00 33.61 3.01
438 439 6.071672 TCCGACATGAGATCATCCTAGAATTC 60.072 42.308 0.00 0.00 33.61 2.17
441 442 4.520874 GTCCGACATGAGATCATCCTAGAA 59.479 45.833 0.00 0.00 33.61 2.10
444 445 3.832527 TGTCCGACATGAGATCATCCTA 58.167 45.455 0.00 0.00 33.61 2.94
446 447 3.459232 TTGTCCGACATGAGATCATCC 57.541 47.619 1.09 0.00 33.61 3.51
498 499 2.466547 ACTACCCGGCTATACCAAGT 57.533 50.000 0.00 0.00 39.03 3.16
501 502 3.167485 CCAATACTACCCGGCTATACCA 58.833 50.000 0.00 0.00 39.03 3.25
503 504 3.615834 GCACCAATACTACCCGGCTATAC 60.616 52.174 0.00 0.00 0.00 1.47
504 505 2.564062 GCACCAATACTACCCGGCTATA 59.436 50.000 0.00 0.00 0.00 1.31
521 776 1.743252 CTTTCTCTCCGGCTGCACC 60.743 63.158 0.50 0.00 0.00 5.01
543 798 1.325355 TACCCATCCGCTAGCACTAC 58.675 55.000 16.45 0.00 0.00 2.73
553 808 2.051334 TGGAAAGCAATACCCATCCG 57.949 50.000 0.00 0.00 0.00 4.18
614 869 0.986019 AACACACACACCCTCCCTCA 60.986 55.000 0.00 0.00 0.00 3.86
670 958 8.470657 AAGTCTTCTGCTTTTTCTCCTAAAAT 57.529 30.769 0.00 0.00 0.00 1.82
675 963 6.782082 AAAAAGTCTTCTGCTTTTTCTCCT 57.218 33.333 9.19 0.00 46.77 3.69
702 1002 4.706962 ACAAGTTCTTGTGCTTTTTCTCCT 59.293 37.500 15.98 0.00 33.23 3.69
704 1004 5.220284 GCAACAAGTTCTTGTGCTTTTTCTC 60.220 40.000 17.16 0.00 34.99 2.87
705 1005 4.627035 GCAACAAGTTCTTGTGCTTTTTCT 59.373 37.500 17.16 0.00 34.99 2.52
709 1009 2.163412 TCGCAACAAGTTCTTGTGCTTT 59.837 40.909 23.18 8.96 34.99 3.51
715 1015 5.095691 ACAAGTATCGCAACAAGTTCTTG 57.904 39.130 10.50 10.50 37.58 3.02
729 1029 5.278364 CCAGACCCGACTGTATACAAGTATC 60.278 48.000 7.06 2.09 36.30 2.24
1178 1493 4.446413 GTCCAGTACGGTGGGCGG 62.446 72.222 1.57 0.00 38.26 6.13
1180 1495 0.969409 ACTAGTCCAGTACGGTGGGC 60.969 60.000 0.00 0.00 43.14 5.36
1181 1496 0.815734 CACTAGTCCAGTACGGTGGG 59.184 60.000 0.00 0.00 38.26 4.61
1182 1497 1.471684 GACACTAGTCCAGTACGGTGG 59.528 57.143 0.00 0.00 39.39 4.61
1183 1498 2.156917 TGACACTAGTCCAGTACGGTG 58.843 52.381 0.00 0.00 44.33 4.94
1184 1499 2.574006 TGACACTAGTCCAGTACGGT 57.426 50.000 0.00 0.00 44.33 4.83
1189 1504 3.027412 CTGGCTATGACACTAGTCCAGT 58.973 50.000 13.76 0.78 44.33 4.00
1195 1527 1.342819 GCTCCCTGGCTATGACACTAG 59.657 57.143 0.00 0.00 0.00 2.57
1236 1568 5.109903 CAACCCTAAATACTGACGGAGAAG 58.890 45.833 0.00 0.00 0.00 2.85
1260 1592 4.506886 AACATCGCTGCCTCTAGTATAC 57.493 45.455 0.00 0.00 0.00 1.47
1266 1602 3.574396 AGCTAATAACATCGCTGCCTCTA 59.426 43.478 0.00 0.00 0.00 2.43
1281 1617 1.562475 AGCCCCAAACGGAAGCTAATA 59.438 47.619 0.00 0.00 32.88 0.98
1282 1618 0.331616 AGCCCCAAACGGAAGCTAAT 59.668 50.000 0.00 0.00 32.88 1.73
1298 1634 1.358046 GCTGAAATCCGCATGAGCC 59.642 57.895 0.00 0.00 37.52 4.70
1384 1720 7.011482 GGTGCAGTAAGACAGGTTTATATGAAG 59.989 40.741 0.00 0.00 0.00 3.02
1394 1734 1.344763 GACAGGTGCAGTAAGACAGGT 59.655 52.381 0.00 0.00 0.00 4.00
1399 1739 2.598565 AGACAGACAGGTGCAGTAAGA 58.401 47.619 0.00 0.00 0.00 2.10
1407 1747 3.185246 ACAACAGAAGACAGACAGGTG 57.815 47.619 0.00 0.00 0.00 4.00
1410 1750 3.246226 CGGAAACAACAGAAGACAGACAG 59.754 47.826 0.00 0.00 0.00 3.51
1423 1763 1.598601 TGTAAAGCCGTCGGAAACAAC 59.401 47.619 17.49 6.37 0.00 3.32
1430 1770 3.255149 ACTCCTATATGTAAAGCCGTCGG 59.745 47.826 6.99 6.99 0.00 4.79
1432 1772 6.979465 AGTTACTCCTATATGTAAAGCCGTC 58.021 40.000 0.00 0.00 31.56 4.79
1446 1787 2.695666 GGCTGCATCAGAGTTACTCCTA 59.304 50.000 8.96 0.00 32.44 2.94
1447 1788 1.484240 GGCTGCATCAGAGTTACTCCT 59.516 52.381 8.96 0.00 32.44 3.69
1448 1789 1.804372 CGGCTGCATCAGAGTTACTCC 60.804 57.143 8.96 0.00 32.44 3.85
1449 1790 1.135139 TCGGCTGCATCAGAGTTACTC 59.865 52.381 3.85 3.85 32.44 2.59
1450 1791 1.134965 GTCGGCTGCATCAGAGTTACT 60.135 52.381 0.50 0.00 32.44 2.24
1451 1792 1.134965 AGTCGGCTGCATCAGAGTTAC 60.135 52.381 0.50 0.00 32.44 2.50
1499 1840 4.625311 ACTGCAAAACAAAAGGAGAAAACG 59.375 37.500 0.00 0.00 0.00 3.60
1600 1942 2.503061 CACCATGAGCGGGAGAGG 59.497 66.667 0.00 0.00 0.00 3.69
1634 1976 2.755103 GGGCAGTTGAGGTCCTTAAATG 59.245 50.000 17.08 17.08 30.33 2.32
1673 2015 3.620488 TGTGTATTCCTTGAAGGATGCC 58.380 45.455 15.75 6.21 45.34 4.40
1694 2036 0.378257 CGCTTCCGTATGCAGCAAAT 59.622 50.000 0.00 0.00 32.71 2.32
1715 2057 0.236187 TCCGTTTGAAAACCGCGATG 59.764 50.000 8.23 0.00 35.51 3.84
1839 2337 3.004315 TCAGGAACGCAATTTTGGAAGTC 59.996 43.478 0.00 0.00 0.00 3.01
1853 2351 1.200020 GGCATTTTCTGGTCAGGAACG 59.800 52.381 0.00 0.00 0.00 3.95
1874 2372 7.767261 AGATCTACAAGTACATCTGAGACAAC 58.233 38.462 0.00 0.00 0.00 3.32
1901 2399 5.279106 CCACAATCAACATCTGGTTTCACAT 60.279 40.000 0.00 0.00 37.72 3.21
1909 2407 7.503566 ACCTATTATTCCACAATCAACATCTGG 59.496 37.037 0.00 0.00 0.00 3.86
1987 2485 7.872483 ACTAAAAGTGCCCACAATTTATCTTTG 59.128 33.333 0.82 0.00 42.86 2.77
2010 2508 9.884814 AAGGAAGAGGAGCTAATATAGAAACTA 57.115 33.333 0.00 0.00 0.00 2.24
2259 2758 5.687285 CCACCTGATTTTTGAAGAGAAAACG 59.313 40.000 0.00 0.00 0.00 3.60
2319 2818 7.106239 AGAATGTATTCTCCAAACAGGTACAG 58.894 38.462 1.35 0.00 43.27 2.74
2367 2866 4.975147 TCCTCTGAAGGCCCAGATAAATAA 59.025 41.667 11.60 0.00 43.02 1.40
2537 3038 8.219546 TCAATGATAAACAGACTTGTCAACAA 57.780 30.769 3.49 0.00 36.23 2.83
2712 3213 4.153117 GTGAACATGAATAGATCCATCGGC 59.847 45.833 0.00 0.00 0.00 5.54
2788 3289 3.009723 CGAAATGACAGGGCAGTTACAT 58.990 45.455 0.00 0.00 0.00 2.29
2843 3346 6.842163 AGCAAACGTGAATTATAGAAGGTTG 58.158 36.000 0.00 0.00 0.00 3.77
2850 3353 6.258727 ACAGGATGAGCAAACGTGAATTATAG 59.741 38.462 0.00 0.00 39.69 1.31
2860 3363 1.462283 CTGTCACAGGATGAGCAAACG 59.538 52.381 0.00 0.00 39.69 3.60
2880 3383 7.334171 CCAGGATTTGTTTGGGAATTTCATTAC 59.666 37.037 0.00 0.00 0.00 1.89
2882 3385 6.183361 ACCAGGATTTGTTTGGGAATTTCATT 60.183 34.615 0.00 0.00 36.28 2.57
2957 3460 4.583426 TCCGAATTAACGAATTTGCATCG 58.417 39.130 6.65 6.65 45.47 3.84
2969 3472 5.661458 TCTGAACTGGATCTCCGAATTAAC 58.339 41.667 0.00 0.00 39.43 2.01
2992 3495 7.439056 CCAAAAAGAATGTGTCAGCTACATTTT 59.561 33.333 13.26 6.45 45.82 1.82
3040 3543 6.795399 TGACAAGTCAAATCTCCAAAAACTC 58.205 36.000 0.00 0.00 36.53 3.01
3067 3571 6.237313 AGTACGCAAATCAGTAAAGGTTTC 57.763 37.500 0.00 0.00 0.00 2.78
3083 3587 7.807433 TCGTTATTTAGTTTGAACTAGTACGCA 59.193 33.333 0.00 0.00 42.04 5.24
3123 3627 7.148171 ACACAGGCTCTAGAATTTTATTCAAGC 60.148 37.037 0.00 7.29 0.00 4.01
3196 3700 5.276461 TGGTGGCAGTAATGTATCTACTG 57.724 43.478 5.77 5.77 46.02 2.74
3197 3701 5.163301 CCTTGGTGGCAGTAATGTATCTACT 60.163 44.000 0.00 0.00 0.00 2.57
3198 3702 5.057149 CCTTGGTGGCAGTAATGTATCTAC 58.943 45.833 0.00 0.00 0.00 2.59
3199 3703 4.719773 ACCTTGGTGGCAGTAATGTATCTA 59.280 41.667 0.00 0.00 40.22 1.98
3200 3704 3.523564 ACCTTGGTGGCAGTAATGTATCT 59.476 43.478 0.00 0.00 40.22 1.98
3201 3705 3.627577 CACCTTGGTGGCAGTAATGTATC 59.372 47.826 11.72 0.00 40.22 2.24
3202 3706 3.010138 ACACCTTGGTGGCAGTAATGTAT 59.990 43.478 21.98 0.00 40.22 2.29
3203 3707 2.373836 ACACCTTGGTGGCAGTAATGTA 59.626 45.455 21.98 0.00 40.22 2.29
3204 3708 1.144913 ACACCTTGGTGGCAGTAATGT 59.855 47.619 21.98 0.00 40.22 2.71
3205 3709 1.909700 ACACCTTGGTGGCAGTAATG 58.090 50.000 21.98 0.00 40.22 1.90
3206 3710 2.675658 AACACCTTGGTGGCAGTAAT 57.324 45.000 21.98 0.00 40.22 1.89
3207 3711 2.445682 AAACACCTTGGTGGCAGTAA 57.554 45.000 21.98 0.00 40.22 2.24
3208 3712 2.445682 AAAACACCTTGGTGGCAGTA 57.554 45.000 21.98 0.00 40.22 2.74
3239 3743 5.483937 TCAAACAGGGAGAGTCAAAGCTATA 59.516 40.000 0.00 0.00 0.00 1.31
3307 3811 4.627467 ACTTAAGCTTGACATGTAGAAGCG 59.373 41.667 25.41 17.84 45.53 4.68
3348 3853 3.658398 CCCATCTGGCAGACAAAGT 57.342 52.632 21.37 0.00 0.00 2.66
3486 3991 7.098477 TCATCAAAATAGGTTCATTGGCAAAG 58.902 34.615 3.01 0.00 0.00 2.77
3572 4077 6.215841 TGTCCCTCACTACCAAATTACCAATA 59.784 38.462 0.00 0.00 0.00 1.90
3577 4082 6.294342 GGTTTTGTCCCTCACTACCAAATTAC 60.294 42.308 0.00 0.00 32.92 1.89
3580 4085 4.141018 AGGTTTTGTCCCTCACTACCAAAT 60.141 41.667 0.00 0.00 34.25 2.32
3582 4087 2.781174 AGGTTTTGTCCCTCACTACCAA 59.219 45.455 0.00 0.00 34.25 3.67
3583 4088 2.414612 AGGTTTTGTCCCTCACTACCA 58.585 47.619 0.00 0.00 34.25 3.25
3584 4089 3.503800 AAGGTTTTGTCCCTCACTACC 57.496 47.619 0.00 0.00 32.87 3.18
3586 4091 4.513406 ACAAAGGTTTTGTCCCTCACTA 57.487 40.909 1.55 0.00 0.00 2.74
3589 4094 5.319043 AGATACAAAGGTTTTGTCCCTCA 57.681 39.130 10.17 0.00 34.11 3.86
3590 4095 7.939784 ATAAGATACAAAGGTTTTGTCCCTC 57.060 36.000 10.17 6.96 34.11 4.30
3591 4096 9.462606 CTAATAAGATACAAAGGTTTTGTCCCT 57.537 33.333 10.17 6.67 34.11 4.20
3592 4097 8.188799 GCTAATAAGATACAAAGGTTTTGTCCC 58.811 37.037 10.17 4.78 34.11 4.46
3593 4098 8.957466 AGCTAATAAGATACAAAGGTTTTGTCC 58.043 33.333 10.17 5.08 34.11 4.02
3594 4099 9.989869 GAGCTAATAAGATACAAAGGTTTTGTC 57.010 33.333 10.17 0.00 34.11 3.18
3595 4100 9.740710 AGAGCTAATAAGATACAAAGGTTTTGT 57.259 29.630 11.43 11.43 36.49 2.83
3598 4103 9.959721 TCAAGAGCTAATAAGATACAAAGGTTT 57.040 29.630 0.00 0.00 0.00 3.27
3599 4104 9.606631 CTCAAGAGCTAATAAGATACAAAGGTT 57.393 33.333 0.00 0.00 0.00 3.50
3620 4125 4.511527 ACCTTCATATGTCACAGCTCAAG 58.488 43.478 1.90 0.00 0.00 3.02
3630 4135 4.397417 AGCAGCTTTTGACCTTCATATGTC 59.603 41.667 1.90 0.00 0.00 3.06
3662 4168 0.535335 TAACAGGCTAAGCGGTCAGG 59.465 55.000 0.00 0.00 0.00 3.86
3663 4169 1.067142 TGTAACAGGCTAAGCGGTCAG 60.067 52.381 0.00 0.00 0.00 3.51
3731 4435 1.610886 GGAACCTTATATGCTCCCGCC 60.611 57.143 0.00 0.00 34.43 6.13
3733 4437 2.028020 GGAGGAACCTTATATGCTCCCG 60.028 54.545 2.26 0.00 45.47 5.14
3748 4737 3.430929 GCAAAGCTCGATTCTAGGAGGAA 60.431 47.826 0.00 0.00 0.00 3.36
3751 4740 2.123342 CGCAAAGCTCGATTCTAGGAG 58.877 52.381 0.00 0.00 0.00 3.69
3771 4762 6.854778 TGATTTTGTTACTTATTAACCGGCC 58.145 36.000 0.00 0.00 39.64 6.13
3774 4765 7.531716 TGGCTGATTTTGTTACTTATTAACCG 58.468 34.615 0.00 0.00 39.64 4.44
3811 4802 7.066284 GCAAAGTATTCTCACACCAGTATTGAT 59.934 37.037 0.00 0.00 0.00 2.57
3847 4839 6.759497 AGGTGTTGTGGCTAATTTAATCTC 57.241 37.500 0.00 0.00 0.00 2.75
3855 4847 5.105917 CCGAAATTAAGGTGTTGTGGCTAAT 60.106 40.000 0.00 0.00 0.00 1.73
3862 4854 7.098074 TGTAAAACCGAAATTAAGGTGTTGT 57.902 32.000 14.60 0.00 38.35 3.32
3894 4886 9.875691 TGGCATGCAGTATATTAGATTACTAAG 57.124 33.333 21.36 0.00 41.12 2.18
3913 4905 3.570975 TCAAATATCCACATCTGGCATGC 59.429 43.478 9.90 9.90 37.49 4.06
3914 4906 5.977489 ATCAAATATCCACATCTGGCATG 57.023 39.130 0.00 0.00 37.49 4.06
3978 4970 2.786495 CCGAGGTGGAGCGCTATGT 61.786 63.158 11.50 0.00 42.00 2.29
4010 5002 2.298729 GCAACAAACTTGGAGGGCATTA 59.701 45.455 0.00 0.00 0.00 1.90
4031 5023 4.201744 ACAACCGAAACAAAAGTACAGACG 60.202 41.667 0.00 0.00 0.00 4.18
4046 5038 4.505808 TGACTCACTAAAACACAACCGAA 58.494 39.130 0.00 0.00 0.00 4.30
4195 5187 2.516695 CAGGTGTGCCAGTGTGCA 60.517 61.111 2.57 2.57 39.37 4.57
4238 5230 8.317679 ACTCTTACTTCAATAGCACTTTGAGAT 58.682 33.333 0.00 0.00 34.76 2.75
4246 5239 5.348997 GTGGACACTCTTACTTCAATAGCAC 59.651 44.000 0.00 0.00 0.00 4.40
4261 5254 2.022129 CGGCGTGAAGTGGACACTC 61.022 63.158 5.30 0.85 41.58 3.51
4267 5260 4.012895 GTGTGCGGCGTGAAGTGG 62.013 66.667 9.37 0.00 0.00 4.00
4286 5279 2.678336 GCAGGAATTCAGGGTAAAGACG 59.322 50.000 7.93 0.00 0.00 4.18
4343 5337 5.836009 GCAAACATAAACTCATTTTGCTCG 58.164 37.500 9.51 0.00 45.51 5.03
4401 5396 3.071457 TCTCTGCTTTGTTGATCCTGTCA 59.929 43.478 0.00 0.00 34.25 3.58
4454 5449 9.967346 AAATTCACCTTTACTCTAAGCTTTTTC 57.033 29.630 3.20 0.00 0.00 2.29
4484 5479 5.404667 CGGAAGGCGATAAAGGAATAGTAAC 59.595 44.000 0.00 0.00 0.00 2.50
4524 5519 9.741647 AGAAGAAGAAAATGTCAAAATCTCAAC 57.258 29.630 0.00 0.00 0.00 3.18
4527 5522 9.609950 CAGAGAAGAAGAAAATGTCAAAATCTC 57.390 33.333 0.00 0.00 0.00 2.75
4528 5523 8.081025 GCAGAGAAGAAGAAAATGTCAAAATCT 58.919 33.333 0.00 0.00 0.00 2.40
4609 5604 6.189677 TGAACTTTAATATTGCAAGGACCG 57.810 37.500 4.94 0.00 0.00 4.79
4623 5618 9.453572 AGCAGAAGAACATGATATGAACTTTAA 57.546 29.630 0.00 0.00 32.88 1.52
4673 5668 9.802039 TTGAAGGTTATCATGGTTTACTACTTT 57.198 29.630 0.00 0.00 0.00 2.66
4703 5699 7.067737 GCCCTTTGCACCAAGTATAAATAGTAA 59.932 37.037 0.00 0.00 40.77 2.24
4787 5785 5.751243 TCTGGTTTCTTTTCAACACTAGC 57.249 39.130 0.00 0.00 0.00 3.42
4861 5859 1.923204 GCACGTATCTCAGCTGAACAG 59.077 52.381 18.85 6.49 0.00 3.16
4914 5912 6.092670 CCATACATATGCCTTTGAAGTATCCG 59.907 42.308 1.58 0.00 32.40 4.18
5051 6050 6.963242 CACGGTGAGAATTCAATACATTCTTG 59.037 38.462 8.44 1.23 40.43 3.02
5074 6073 3.942130 AGCTTGTTTTGATTAGCCCAC 57.058 42.857 0.00 0.00 34.19 4.61
5116 6123 8.371699 GGGAGATACTTCTATCATTTAACAGCT 58.628 37.037 0.00 0.00 32.36 4.24
5138 6145 7.771361 GGAATTTCTTAAAGAAGAGGTAGGGAG 59.229 40.741 0.00 0.00 42.66 4.30
5174 6181 5.175859 GCACTTATAGTACAAGCCTGACAA 58.824 41.667 0.00 0.00 0.00 3.18
5177 6184 5.104941 ACATGCACTTATAGTACAAGCCTGA 60.105 40.000 0.00 0.00 0.00 3.86
5419 6426 8.710551 TGCAATCACAGTTTAAATAAATTGCAG 58.289 29.630 21.95 6.66 38.08 4.41
5443 6450 7.170658 GGAGACAAGTCAATATCTGAGTAATGC 59.829 40.741 2.72 0.00 36.65 3.56
5489 6496 6.646240 TGAATTTGGATTTTAGCTTGCAACTC 59.354 34.615 0.00 0.00 0.00 3.01
5953 6960 1.901591 AATGCACAGGGTGAGAACAG 58.098 50.000 0.00 0.00 35.23 3.16
6016 7025 1.972872 ACACCAGCTTGGAAACTCAG 58.027 50.000 8.91 0.00 40.96 3.35
6080 7089 4.133820 TGGTACAATGTGGACTGAAAGTG 58.866 43.478 0.00 0.00 43.26 3.16
6119 7128 2.854424 GCATGCGACGGTATGGAATTTG 60.854 50.000 0.00 0.00 36.83 2.32
6138 7147 2.060980 GGGTGGTTGGTTGGTTGCA 61.061 57.895 0.00 0.00 0.00 4.08
6157 7166 5.339177 TGCATGCGTTTTATTAGATTGTGG 58.661 37.500 14.09 0.00 0.00 4.17
6161 7170 5.649557 TGCTTGCATGCGTTTTATTAGATT 58.350 33.333 18.54 0.00 35.36 2.40
6162 7171 5.247507 TGCTTGCATGCGTTTTATTAGAT 57.752 34.783 18.54 0.00 35.36 1.98
6168 7177 1.067669 TGGTTGCTTGCATGCGTTTTA 59.932 42.857 18.54 0.00 35.36 1.52
6170 7179 0.179089 TTGGTTGCTTGCATGCGTTT 60.179 45.000 18.54 0.00 35.36 3.60
6173 7182 0.240678 TAGTTGGTTGCTTGCATGCG 59.759 50.000 18.54 0.00 35.36 4.73
6174 7183 1.669795 GGTAGTTGGTTGCTTGCATGC 60.670 52.381 17.19 17.19 0.00 4.06
6176 7185 1.256812 GGGTAGTTGGTTGCTTGCAT 58.743 50.000 0.00 0.00 0.00 3.96
6177 7186 0.825840 GGGGTAGTTGGTTGCTTGCA 60.826 55.000 0.00 0.00 0.00 4.08
6179 7188 0.178975 TGGGGGTAGTTGGTTGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
6180 7189 0.178973 GTGGGGGTAGTTGGTTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
6181 7190 1.357272 TGTGGGGGTAGTTGGTTGCT 61.357 55.000 0.00 0.00 0.00 3.91
6182 7191 0.468400 TTGTGGGGGTAGTTGGTTGC 60.468 55.000 0.00 0.00 0.00 4.17
6183 7192 2.167662 GATTGTGGGGGTAGTTGGTTG 58.832 52.381 0.00 0.00 0.00 3.77
6184 7193 2.070573 AGATTGTGGGGGTAGTTGGTT 58.929 47.619 0.00 0.00 0.00 3.67
6206 7215 6.736794 GCATTGTCCAGTCAACTCATCTTTTT 60.737 38.462 0.00 0.00 0.00 1.94
6207 7216 5.278660 GCATTGTCCAGTCAACTCATCTTTT 60.279 40.000 0.00 0.00 0.00 2.27
6208 7217 4.217118 GCATTGTCCAGTCAACTCATCTTT 59.783 41.667 0.00 0.00 0.00 2.52
6209 7218 3.755378 GCATTGTCCAGTCAACTCATCTT 59.245 43.478 0.00 0.00 0.00 2.40
6210 7219 3.008813 AGCATTGTCCAGTCAACTCATCT 59.991 43.478 0.00 0.00 0.00 2.90
6211 7220 3.341823 AGCATTGTCCAGTCAACTCATC 58.658 45.455 0.00 0.00 0.00 2.92
6212 7221 3.430042 AGCATTGTCCAGTCAACTCAT 57.570 42.857 0.00 0.00 0.00 2.90
6213 7222 2.936919 AGCATTGTCCAGTCAACTCA 57.063 45.000 0.00 0.00 0.00 3.41
6214 7223 4.574599 AAAAGCATTGTCCAGTCAACTC 57.425 40.909 0.00 0.00 0.00 3.01
6328 7337 0.590195 CAACCAGTCAGCAGCAACTC 59.410 55.000 0.00 0.00 0.00 3.01
6412 7421 2.936919 AACTGTCCTCTGTGCATGAA 57.063 45.000 0.00 0.00 0.00 2.57
6421 7432 4.027437 GGTATCCTGAGAAACTGTCCTCT 58.973 47.826 10.24 2.75 0.00 3.69
6427 7438 6.520272 CCTTATGAGGTATCCTGAGAAACTG 58.480 44.000 0.00 0.00 38.32 3.16
6456 7468 9.685828 GCAAAACTGTAAATGTGTATCCTTAAA 57.314 29.630 0.00 0.00 0.00 1.52
6502 7514 5.301551 TGCATTCAACTCTTTGCTTTTAGGA 59.698 36.000 0.00 0.00 36.10 2.94
6546 7583 9.638176 AATGGCAGAAGATTATGAAGTAGAAAT 57.362 29.630 0.00 0.00 0.00 2.17
6755 7792 1.478510 TCCTCAGATCTTTCGGCTGAC 59.521 52.381 0.00 0.00 35.09 3.51
6855 7892 7.039434 TGGGAGTAATGAGAGTGTGATCATATC 60.039 40.741 0.00 0.00 35.11 1.63
7054 8092 5.163343 TGTCAGCCACAGTTAAAGTAGTTCT 60.163 40.000 0.00 0.00 0.00 3.01
7187 8246 3.354948 ACAGCCATCAAGTGATAGCAA 57.645 42.857 13.08 0.00 40.77 3.91
7277 8336 2.097825 TCCAAGTCTAGTCGGGCTTAC 58.902 52.381 0.00 0.00 0.00 2.34
7289 8348 1.620819 ACGATGAGCACTTCCAAGTCT 59.379 47.619 0.00 0.00 37.08 3.24
7295 8354 2.015736 ATGTGACGATGAGCACTTCC 57.984 50.000 0.00 0.00 36.05 3.46
7406 8465 3.126453 AGGCTCAAACAATATCTCCCCT 58.874 45.455 0.00 0.00 0.00 4.79
7487 8546 1.680735 CTGAAGTGGGAGGAGAGATCG 59.319 57.143 0.00 0.00 0.00 3.69
7512 8571 5.304686 AGTTCTCCACAGGATTGTAACAA 57.695 39.130 0.00 0.00 35.25 2.83
7730 8789 6.274157 AGCATCCGTAGTTCCATATCTAAG 57.726 41.667 0.00 0.00 0.00 2.18
7811 8870 2.231964 GTCCAGCAGCAATGAAATGGAA 59.768 45.455 0.00 0.00 38.49 3.53
7817 8876 3.244526 TGAAGTAGTCCAGCAGCAATGAA 60.245 43.478 0.00 0.00 0.00 2.57
7915 8974 8.749354 ACTCAATGGGTTTAAGATGGAAAATAC 58.251 33.333 0.00 0.00 0.00 1.89
7916 8975 8.893563 ACTCAATGGGTTTAAGATGGAAAATA 57.106 30.769 0.00 0.00 0.00 1.40
7917 8976 7.797121 ACTCAATGGGTTTAAGATGGAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
7919 8978 6.014669 CCAACTCAATGGGTTTAAGATGGAAA 60.015 38.462 0.00 0.00 36.79 3.13
7921 8980 5.016173 CCAACTCAATGGGTTTAAGATGGA 58.984 41.667 0.00 0.00 36.79 3.41
7922 8981 4.772100 ACCAACTCAATGGGTTTAAGATGG 59.228 41.667 0.00 0.00 45.18 3.51
7926 8988 3.573967 AGCACCAACTCAATGGGTTTAAG 59.426 43.478 0.00 0.00 45.18 1.85
7942 9004 9.120538 GGAAGATGAAATATACTTTAAGCACCA 57.879 33.333 0.00 0.00 0.00 4.17
7954 9016 8.101309 TCTGGTTCCAAGGAAGATGAAATATA 57.899 34.615 0.88 0.00 34.49 0.86
7975 9037 5.007626 CCGTATTGTTTCACCATGTATCTGG 59.992 44.000 0.00 0.00 42.35 3.86
8083 9145 2.124983 ACCATGCATCGCGAGCTT 60.125 55.556 24.04 17.82 0.00 3.74
8231 9296 8.258007 TGTATCGAAAAATCTCAACTAGGTGAT 58.742 33.333 11.77 0.00 0.00 3.06
8279 9349 3.317430 AGAAGAAGCTGCAGGAAAACAAG 59.683 43.478 17.12 0.00 0.00 3.16
8282 9353 2.880890 TCAGAAGAAGCTGCAGGAAAAC 59.119 45.455 17.12 0.00 35.86 2.43
8286 9357 1.696336 AGTTCAGAAGAAGCTGCAGGA 59.304 47.619 17.12 0.00 35.86 3.86
8323 9395 4.044065 TGTGGACCACAAGGAAATAGGATT 59.956 41.667 25.22 0.00 41.69 3.01
8421 9497 2.096909 CAGCTTTTACCACGACGACAAG 60.097 50.000 0.00 0.00 0.00 3.16
8423 9499 1.493772 CAGCTTTTACCACGACGACA 58.506 50.000 0.00 0.00 0.00 4.35
8495 9573 7.231317 ACAGGAACAAAACTGTTACATCATCAT 59.769 33.333 3.21 0.00 45.03 2.45
8547 9625 1.220529 TTTCTCGCTGAACAGTGCTG 58.779 50.000 10.07 0.00 38.74 4.41
8571 9649 1.971167 GGCACTTGCGACATTCCCA 60.971 57.895 0.00 0.00 43.26 4.37
8611 9690 9.341899 CACTAAAGTAAAATGCTGGATAAACAC 57.658 33.333 0.00 0.00 0.00 3.32
8619 9698 6.238759 GGGCTATCACTAAAGTAAAATGCTGG 60.239 42.308 0.00 0.00 0.00 4.85
8740 9823 8.547069 CAGGACTTCTCAATCTCGAAATAAATC 58.453 37.037 0.00 0.00 0.00 2.17
8788 9871 6.267242 GGTAGTAGTTGGGACCTTAATCCTAG 59.733 46.154 0.00 0.00 38.95 3.02
8789 9872 6.138967 GGTAGTAGTTGGGACCTTAATCCTA 58.861 44.000 0.00 0.00 38.95 2.94
8801 9884 3.160777 CTACAAGCGGTAGTAGTTGGG 57.839 52.381 9.61 0.00 43.73 4.12
8810 9893 6.650427 ATAGTCATCATTCTACAAGCGGTA 57.350 37.500 0.00 0.00 0.00 4.02
8811 9894 3.895232 AGTCATCATTCTACAAGCGGT 57.105 42.857 0.00 0.00 0.00 5.68
8813 9896 5.985530 TCCAATAGTCATCATTCTACAAGCG 59.014 40.000 0.00 0.00 0.00 4.68
8814 9897 7.572724 GCATCCAATAGTCATCATTCTACAAGC 60.573 40.741 0.00 0.00 0.00 4.01
8815 9898 7.660617 AGCATCCAATAGTCATCATTCTACAAG 59.339 37.037 0.00 0.00 0.00 3.16
8816 9899 7.443272 CAGCATCCAATAGTCATCATTCTACAA 59.557 37.037 0.00 0.00 0.00 2.41
8817 9900 6.932960 CAGCATCCAATAGTCATCATTCTACA 59.067 38.462 0.00 0.00 0.00 2.74
8818 9901 6.370994 CCAGCATCCAATAGTCATCATTCTAC 59.629 42.308 0.00 0.00 0.00 2.59
8819 9902 6.270695 TCCAGCATCCAATAGTCATCATTCTA 59.729 38.462 0.00 0.00 0.00 2.10
8820 9903 5.072736 TCCAGCATCCAATAGTCATCATTCT 59.927 40.000 0.00 0.00 0.00 2.40
8821 9904 5.311265 TCCAGCATCCAATAGTCATCATTC 58.689 41.667 0.00 0.00 0.00 2.67
8825 9908 6.263842 TCATTTTCCAGCATCCAATAGTCATC 59.736 38.462 0.00 0.00 0.00 2.92
8827 9910 5.508567 TCATTTTCCAGCATCCAATAGTCA 58.491 37.500 0.00 0.00 0.00 3.41
8828 9911 6.645790 ATCATTTTCCAGCATCCAATAGTC 57.354 37.500 0.00 0.00 0.00 2.59
8829 9912 8.168725 AGATATCATTTTCCAGCATCCAATAGT 58.831 33.333 5.32 0.00 0.00 2.12
8830 9913 8.577048 AGATATCATTTTCCAGCATCCAATAG 57.423 34.615 5.32 0.00 0.00 1.73
8831 9914 9.453572 GTAGATATCATTTTCCAGCATCCAATA 57.546 33.333 5.32 0.00 0.00 1.90
8833 9916 7.289310 TGTAGATATCATTTTCCAGCATCCAA 58.711 34.615 5.32 0.00 0.00 3.53
8835 9918 7.446625 ACTTGTAGATATCATTTTCCAGCATCC 59.553 37.037 5.32 0.00 0.00 3.51
8837 9920 9.277783 GTACTTGTAGATATCATTTTCCAGCAT 57.722 33.333 5.32 0.00 0.00 3.79
8838 9921 8.264347 TGTACTTGTAGATATCATTTTCCAGCA 58.736 33.333 5.32 0.00 0.00 4.41
8839 9922 8.662781 TGTACTTGTAGATATCATTTTCCAGC 57.337 34.615 5.32 0.00 0.00 4.85
8869 9952 9.565090 TGACTATCTATATTCTTGCAGCATTTT 57.435 29.630 0.00 0.00 0.00 1.82
8870 9953 9.736414 ATGACTATCTATATTCTTGCAGCATTT 57.264 29.630 0.00 0.00 0.00 2.32
8871 9954 9.163899 CATGACTATCTATATTCTTGCAGCATT 57.836 33.333 0.00 0.00 0.00 3.56
8872 9955 8.537858 TCATGACTATCTATATTCTTGCAGCAT 58.462 33.333 0.00 0.00 0.00 3.79
8873 9956 7.899973 TCATGACTATCTATATTCTTGCAGCA 58.100 34.615 0.00 0.00 0.00 4.41
8874 9957 8.768957 TTCATGACTATCTATATTCTTGCAGC 57.231 34.615 0.00 0.00 0.00 5.25
8969 10052 3.777522 ACCCTCCAGCCAGATAATATAGC 59.222 47.826 0.00 0.00 0.00 2.97
8970 10053 4.780021 ACACCCTCCAGCCAGATAATATAG 59.220 45.833 0.00 0.00 0.00 1.31
8972 10055 3.602608 ACACCCTCCAGCCAGATAATAT 58.397 45.455 0.00 0.00 0.00 1.28
8974 10057 1.898863 ACACCCTCCAGCCAGATAAT 58.101 50.000 0.00 0.00 0.00 1.28
9002 10085 4.712476 AGAACAACTGCAAGATGAAGACT 58.288 39.130 0.00 0.00 39.37 3.24
9003 10086 5.429957 AAGAACAACTGCAAGATGAAGAC 57.570 39.130 0.00 0.00 39.37 3.01
9038 10121 5.463061 CAGCTTACAACCAATGTTCAAAAGG 59.537 40.000 0.00 0.00 43.63 3.11
9048 10131 3.074538 AGTTCCTCCAGCTTACAACCAAT 59.925 43.478 0.00 0.00 0.00 3.16
9057 10140 2.301346 CACAAACAGTTCCTCCAGCTT 58.699 47.619 0.00 0.00 0.00 3.74
9072 10155 4.314961 CATAGTCAGGTACAGCACACAAA 58.685 43.478 0.00 0.00 0.00 2.83
9079 10162 2.231215 CCTGCATAGTCAGGTACAGC 57.769 55.000 0.00 0.00 46.59 4.40
9088 10171 3.243002 GCAAGAAAGATGCCTGCATAGTC 60.243 47.826 4.30 3.22 37.85 2.59
9091 10174 2.725637 TGCAAGAAAGATGCCTGCATA 58.274 42.857 4.30 0.00 43.16 3.14
9094 10177 2.268298 CATTGCAAGAAAGATGCCTGC 58.732 47.619 4.94 0.00 43.16 4.85
9108 10191 2.589540 CTACCCGGCTCCATTGCA 59.410 61.111 0.00 0.00 34.04 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.