Multiple sequence alignment - TraesCS7A01G517000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G517000 chr7A 100.000 4606 0 0 1 4606 701491109 701495714 0.000000e+00 8506.0
1 TraesCS7A01G517000 chr7A 86.957 552 20 11 2526 3050 708800259 708800785 1.440000e-159 573.0
2 TraesCS7A01G517000 chr7A 92.825 223 16 0 2122 2344 708800035 708800257 1.600000e-84 324.0
3 TraesCS7A01G517000 chr7D 87.863 2167 150 41 2524 4605 611584857 611586995 0.000000e+00 2440.0
4 TraesCS7A01G517000 chr7D 91.993 612 26 11 1737 2347 611584271 611584860 0.000000e+00 837.0
5 TraesCS7A01G517000 chr7D 89.171 434 23 6 841 1268 611583431 611583846 1.900000e-143 520.0
6 TraesCS7A01G517000 chr7D 83.051 354 56 2 1 350 611521001 611521354 7.440000e-83 318.0
7 TraesCS7A01G517000 chr7D 83.658 257 33 2 374 630 611521465 611521712 2.770000e-57 233.0
8 TraesCS7A01G517000 chr7D 86.869 198 17 2 1316 1513 611583843 611584031 3.610000e-51 213.0
9 TraesCS7A01G517000 chr7D 100.000 51 0 0 781 831 611583175 611583225 1.360000e-15 95.3
10 TraesCS7A01G517000 chr7B 91.324 1556 97 19 1 1536 700812974 700814511 0.000000e+00 2091.0
11 TraesCS7A01G517000 chr7B 85.561 1766 118 65 2605 4330 700817603 700819271 0.000000e+00 1722.0
12 TraesCS7A01G517000 chr7B 90.933 750 52 7 1602 2347 700814637 700815374 0.000000e+00 994.0
13 TraesCS7A01G517000 chr7B 89.848 591 46 9 1597 2177 747105840 747106426 0.000000e+00 747.0
14 TraesCS7A01G517000 chr7B 93.151 292 7 4 2767 3050 725531449 725531163 2.560000e-112 416.0
15 TraesCS7A01G517000 chr7B 85.763 295 31 8 1282 1574 747105561 747105846 7.490000e-78 302.0
16 TraesCS7A01G517000 chr7B 88.889 243 21 4 4369 4606 700819270 700819511 1.250000e-75 294.0
17 TraesCS7A01G517000 chr7B 89.362 188 11 5 1597 1779 725547539 725547356 1.290000e-55 228.0
18 TraesCS7A01G517000 chr5D 86.787 719 79 10 868 1577 10217260 10216549 0.000000e+00 787.0
19 TraesCS7A01G517000 chr5D 89.789 617 56 5 1732 2347 10216248 10215638 0.000000e+00 784.0
20 TraesCS7A01G517000 chr5D 85.326 552 29 15 2526 3050 10215639 10215113 1.470000e-144 523.0
21 TraesCS7A01G517000 chrUn 85.294 714 70 18 868 1574 265497702 265497017 0.000000e+00 704.0
22 TraesCS7A01G517000 chrUn 92.255 439 33 1 1909 2347 265495173 265494736 5.060000e-174 621.0
23 TraesCS7A01G517000 chrUn 85.139 323 33 9 1597 1913 265497023 265496710 2.670000e-82 316.0
24 TraesCS7A01G517000 chr1B 85.294 714 70 18 868 1574 588075943 588075258 0.000000e+00 704.0
25 TraesCS7A01G517000 chr1B 85.294 714 70 18 868 1574 588132743 588132058 0.000000e+00 704.0
26 TraesCS7A01G517000 chr1B 92.255 439 33 1 1909 2347 588073415 588072978 5.060000e-174 621.0
27 TraesCS7A01G517000 chr1B 92.255 439 33 1 1909 2347 588130286 588129849 5.060000e-174 621.0
28 TraesCS7A01G517000 chr1B 83.366 505 32 15 2541 3018 588118314 588117835 1.980000e-113 420.0
29 TraesCS7A01G517000 chr1B 83.168 505 33 15 2541 3018 588063756 588063277 9.220000e-112 414.0
30 TraesCS7A01G517000 chr1B 85.139 323 33 9 1597 1913 588075264 588074951 2.670000e-82 316.0
31 TraesCS7A01G517000 chr1B 85.139 323 33 9 1597 1913 588132064 588131751 2.670000e-82 316.0
32 TraesCS7A01G517000 chr5A 86.775 552 21 22 2526 3050 685405542 685405016 6.690000e-158 568.0
33 TraesCS7A01G517000 chr3B 86.556 543 29 19 2526 3050 28677478 28677994 4.030000e-155 558.0
34 TraesCS7A01G517000 chr3B 92.832 279 20 0 2066 2344 28677198 28677476 5.550000e-109 405.0
35 TraesCS7A01G517000 chr3B 88.824 170 17 2 2352 2521 813983178 813983011 1.680000e-49 207.0
36 TraesCS7A01G517000 chr5B 86.422 545 27 12 2526 3050 39818841 39818324 1.870000e-153 553.0
37 TraesCS7A01G517000 chr5B 90.288 278 27 0 2066 2343 39819121 39818844 9.420000e-97 364.0
38 TraesCS7A01G517000 chr2A 86.232 552 23 16 2526 3050 438231011 438230486 2.420000e-152 549.0
39 TraesCS7A01G517000 chr1A 89.157 166 16 1 2360 2525 558543110 558542947 6.040000e-49 206.0
40 TraesCS7A01G517000 chr4D 88.957 163 16 1 2360 2522 85011120 85011280 2.810000e-47 200.0
41 TraesCS7A01G517000 chr4D 87.349 166 19 1 2360 2525 480827563 480827400 6.080000e-44 189.0
42 TraesCS7A01G517000 chr3A 88.889 162 15 2 2352 2513 737300524 737300366 3.640000e-46 196.0
43 TraesCS7A01G517000 chr2D 87.879 165 18 1 2360 2524 35507082 35507244 4.700000e-45 193.0
44 TraesCS7A01G517000 chr2D 87.805 164 18 2 2360 2523 43409018 43408857 1.690000e-44 191.0
45 TraesCS7A01G517000 chr2D 86.905 168 20 1 2356 2523 458155118 458155283 2.190000e-43 187.0
46 TraesCS7A01G517000 chr2B 85.294 170 23 2 2360 2529 68250249 68250082 1.700000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G517000 chr7A 701491109 701495714 4605 False 8506.00 8506 100.000000 1 4606 1 chr7A.!!$F1 4605
1 TraesCS7A01G517000 chr7A 708800035 708800785 750 False 448.50 573 89.891000 2122 3050 2 chr7A.!!$F2 928
2 TraesCS7A01G517000 chr7D 611583175 611586995 3820 False 821.06 2440 91.179200 781 4605 5 chr7D.!!$F2 3824
3 TraesCS7A01G517000 chr7D 611521001 611521712 711 False 275.50 318 83.354500 1 630 2 chr7D.!!$F1 629
4 TraesCS7A01G517000 chr7B 700812974 700819511 6537 False 1275.25 2091 89.176750 1 4606 4 chr7B.!!$F1 4605
5 TraesCS7A01G517000 chr7B 747105561 747106426 865 False 524.50 747 87.805500 1282 2177 2 chr7B.!!$F2 895
6 TraesCS7A01G517000 chr5D 10215113 10217260 2147 True 698.00 787 87.300667 868 3050 3 chr5D.!!$R1 2182
7 TraesCS7A01G517000 chrUn 265494736 265497702 2966 True 547.00 704 87.562667 868 2347 3 chrUn.!!$R1 1479
8 TraesCS7A01G517000 chr1B 588072978 588075943 2965 True 547.00 704 87.562667 868 2347 3 chr1B.!!$R3 1479
9 TraesCS7A01G517000 chr1B 588129849 588132743 2894 True 547.00 704 87.562667 868 2347 3 chr1B.!!$R4 1479
10 TraesCS7A01G517000 chr5A 685405016 685405542 526 True 568.00 568 86.775000 2526 3050 1 chr5A.!!$R1 524
11 TraesCS7A01G517000 chr3B 28677198 28677994 796 False 481.50 558 89.694000 2066 3050 2 chr3B.!!$F1 984
12 TraesCS7A01G517000 chr5B 39818324 39819121 797 True 458.50 553 88.355000 2066 3050 2 chr5B.!!$R1 984
13 TraesCS7A01G517000 chr2A 438230486 438231011 525 True 549.00 549 86.232000 2526 3050 1 chr2A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1150 0.179134 ACAGCTGATACGCGAACCTC 60.179 55.000 23.35 3.96 34.4 3.85 F
1277 1590 1.017177 TCGCCGTGTTCACCTAATGC 61.017 55.000 0.00 0.00 0.0 3.56 F
1543 1867 1.613437 CAGTTCTGAATTGCCGGGTTT 59.387 47.619 2.18 0.00 0.0 3.27 F
2407 4484 0.412640 ACCCTCCGACCCTCTTTAGT 59.587 55.000 0.00 0.00 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 4465 0.412640 ACTAAAGAGGGTCGGAGGGT 59.587 55.000 0.0 0.0 0.00 4.34 R
2389 4466 1.481363 GAACTAAAGAGGGTCGGAGGG 59.519 57.143 0.0 0.0 0.00 4.30 R
3433 7731 1.136695 CCTGCTGAAACAACCTGCAAA 59.863 47.619 0.0 0.0 37.87 3.68 R
4199 8508 0.183731 CCCACCCTCAGGCCTTAATC 59.816 60.000 0.0 0.0 36.11 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.687354 TCTTCTTGTGCAGGAGGACC 59.313 55.000 0.00 0.00 34.84 4.46
46 47 0.842030 TCTTGTGCAGGAGGACCCAT 60.842 55.000 0.00 0.00 34.84 4.00
80 81 4.617530 GCAAGCCCACATGATGCATATAAG 60.618 45.833 0.00 0.00 37.00 1.73
208 211 1.742268 GAATGCTTGAAGGAGAGGCAC 59.258 52.381 0.00 0.00 35.72 5.01
216 219 2.846206 TGAAGGAGAGGCACCAATACAT 59.154 45.455 0.00 0.00 0.00 2.29
241 247 4.147321 CCCTTCTGCTATGTATGCCAAAT 58.853 43.478 0.00 0.00 0.00 2.32
277 283 1.343075 TGGCCACCCAACCTGTTTTTA 60.343 47.619 0.00 0.00 38.46 1.52
358 364 7.255520 GCCAAATCTCTCATGAAGCATATCTTT 60.256 37.037 0.00 0.00 34.56 2.52
406 500 1.817740 CGGAAAAGGAGGCAGGTGAAA 60.818 52.381 0.00 0.00 0.00 2.69
413 507 1.163554 GAGGCAGGTGAAAGAAGCTG 58.836 55.000 0.00 0.00 46.20 4.24
525 628 9.462174 CAAACACTTTGCTATGAATTCACTAAA 57.538 29.630 11.07 8.77 33.36 1.85
598 701 2.158885 GGAGTGGCTAAAGGTGGATCTC 60.159 54.545 0.00 0.00 0.00 2.75
655 758 2.594592 GCGTGGGCTCTGGTTGTT 60.595 61.111 0.00 0.00 35.83 2.83
660 763 1.110442 TGGGCTCTGGTTGTTTGTTG 58.890 50.000 0.00 0.00 0.00 3.33
663 766 0.594796 GCTCTGGTTGTTTGTTGCCG 60.595 55.000 0.00 0.00 0.00 5.69
665 768 1.608590 CTCTGGTTGTTTGTTGCCGAT 59.391 47.619 0.00 0.00 0.00 4.18
673 776 6.142817 GGTTGTTTGTTGCCGATATATGATC 58.857 40.000 0.00 0.00 0.00 2.92
675 778 7.172532 GGTTGTTTGTTGCCGATATATGATCTA 59.827 37.037 0.00 0.00 0.00 1.98
680 783 5.359860 TGTTGCCGATATATGATCTATCCGT 59.640 40.000 0.00 0.00 0.00 4.69
697 800 7.663827 TCTATCCGTTTAAAAACACTCTCTCA 58.336 34.615 6.41 0.00 38.81 3.27
713 816 8.153550 ACACTCTCTCATTTCATAGTTCTTGTT 58.846 33.333 0.00 0.00 0.00 2.83
833 936 0.519077 CAGCAAGAGAAGGCGGAAAC 59.481 55.000 0.00 0.00 34.54 2.78
837 940 0.398318 AAGAGAAGGCGGAAACAGCT 59.602 50.000 0.00 0.00 34.52 4.24
839 942 0.320771 GAGAAGGCGGAAACAGCTGA 60.321 55.000 23.35 0.00 34.52 4.26
847 1146 1.355971 GGAAACAGCTGATACGCGAA 58.644 50.000 23.35 0.00 34.40 4.70
851 1150 0.179134 ACAGCTGATACGCGAACCTC 60.179 55.000 23.35 3.96 34.40 3.85
859 1158 4.157120 CGCGAACCTCCCGGGAAT 62.157 66.667 26.68 13.40 41.58 3.01
1273 1586 1.174078 TGTCTCGCCGTGTTCACCTA 61.174 55.000 0.00 0.00 0.00 3.08
1277 1590 1.017177 TCGCCGTGTTCACCTAATGC 61.017 55.000 0.00 0.00 0.00 3.56
1355 1678 4.517285 TGAAATTAGATGGAGGACTGCAC 58.483 43.478 0.00 0.00 32.58 4.57
1356 1679 4.225942 TGAAATTAGATGGAGGACTGCACT 59.774 41.667 0.00 0.00 32.58 4.40
1495 1818 4.004982 GACGAGTCCTAGTTCTGTTCTCT 58.995 47.826 0.00 0.00 0.00 3.10
1497 1820 4.937015 ACGAGTCCTAGTTCTGTTCTCTAC 59.063 45.833 0.00 0.00 0.00 2.59
1499 1822 5.254901 GAGTCCTAGTTCTGTTCTCTACCA 58.745 45.833 0.00 0.00 0.00 3.25
1515 1838 3.976704 CCAGCAGGTTAACATGGGA 57.023 52.632 20.75 0.00 0.00 4.37
1520 1843 4.381932 CCAGCAGGTTAACATGGGATTTTC 60.382 45.833 20.75 3.37 0.00 2.29
1523 1846 5.185828 AGCAGGTTAACATGGGATTTTCTTC 59.814 40.000 20.75 1.33 0.00 2.87
1529 1853 7.039714 GGTTAACATGGGATTTTCTTCAGTTCT 60.040 37.037 8.10 0.00 0.00 3.01
1543 1867 1.613437 CAGTTCTGAATTGCCGGGTTT 59.387 47.619 2.18 0.00 0.00 3.27
1564 1888 6.631636 GGTTTAGCGAATAAGAATTTAAGCCG 59.368 38.462 0.00 0.00 0.00 5.52
1577 1901 5.633830 ATTTAAGCCGCCATAAGATGATG 57.366 39.130 0.00 0.00 0.00 3.07
1580 1904 2.708051 AGCCGCCATAAGATGATGATG 58.292 47.619 0.00 0.00 0.00 3.07
1584 1961 3.504906 CCGCCATAAGATGATGATGCTTT 59.495 43.478 0.00 0.00 0.00 3.51
1636 2157 7.530426 ACCAAGAAATAATAATCAGCCCATC 57.470 36.000 0.00 0.00 0.00 3.51
1699 2222 3.202097 GAGGAATAGCAAGAGGAACTGC 58.798 50.000 0.00 0.00 41.55 4.40
1791 2320 3.941704 TGTGTATCCCATGCCATTGTA 57.058 42.857 0.00 0.00 0.00 2.41
1796 2325 5.238650 GTGTATCCCATGCCATTGTAGTTAC 59.761 44.000 0.00 0.00 0.00 2.50
1865 2394 4.020543 AGGTTGCTGTTTGACAAACCTAA 58.979 39.130 24.58 15.19 43.68 2.69
1966 4036 1.911766 GGACCACGAGGGGAGACAA 60.912 63.158 3.29 0.00 42.91 3.18
2151 4227 6.882610 ACAACTCTTTCTTTGTGCATGATA 57.117 33.333 0.00 0.00 34.61 2.15
2177 4253 2.435372 TGGGGCATATGTTTGGTCTC 57.565 50.000 4.29 0.00 0.00 3.36
2284 4361 7.290014 TGGTCTTATGAGTTCTGCTATTATGGA 59.710 37.037 0.00 0.00 0.00 3.41
2308 4385 7.118680 GGAAAAATACGACAGGTTCATGTAGAA 59.881 37.037 4.95 0.00 32.25 2.10
2347 4424 5.945784 CCATTTTCTTTGTGAGGGTCATAGA 59.054 40.000 0.00 0.00 0.00 1.98
2348 4425 6.127897 CCATTTTCTTTGTGAGGGTCATAGAC 60.128 42.308 0.00 0.00 0.00 2.59
2349 4426 5.825593 TTTCTTTGTGAGGGTCATAGACT 57.174 39.130 0.00 0.00 32.47 3.24
2350 4427 5.407407 TTCTTTGTGAGGGTCATAGACTC 57.593 43.478 0.00 0.00 32.35 3.36
2351 4428 4.416516 TCTTTGTGAGGGTCATAGACTCA 58.583 43.478 0.00 0.00 35.11 3.41
2352 4429 5.026121 TCTTTGTGAGGGTCATAGACTCAT 58.974 41.667 0.00 0.00 42.54 2.90
2353 4430 6.194967 TCTTTGTGAGGGTCATAGACTCATA 58.805 40.000 0.00 0.00 42.54 2.15
2354 4431 6.322456 TCTTTGTGAGGGTCATAGACTCATAG 59.678 42.308 0.00 0.00 42.54 2.23
2355 4432 5.130705 TGTGAGGGTCATAGACTCATAGT 57.869 43.478 0.00 0.00 42.54 2.12
2356 4433 6.262056 TGTGAGGGTCATAGACTCATAGTA 57.738 41.667 0.00 0.00 42.54 1.82
2357 4434 6.669631 TGTGAGGGTCATAGACTCATAGTAA 58.330 40.000 0.00 0.00 42.54 2.24
2358 4435 7.123383 TGTGAGGGTCATAGACTCATAGTAAA 58.877 38.462 0.00 0.00 42.54 2.01
2359 4436 7.785028 TGTGAGGGTCATAGACTCATAGTAAAT 59.215 37.037 0.00 0.00 42.54 1.40
2360 4437 9.298250 GTGAGGGTCATAGACTCATAGTAAATA 57.702 37.037 0.00 0.00 42.54 1.40
2361 4438 9.521841 TGAGGGTCATAGACTCATAGTAAATAG 57.478 37.037 0.00 0.00 35.11 1.73
2362 4439 8.887264 AGGGTCATAGACTCATAGTAAATAGG 57.113 38.462 0.00 0.00 35.11 2.57
2363 4440 7.397761 AGGGTCATAGACTCATAGTAAATAGGC 59.602 40.741 0.00 0.00 35.11 3.93
2364 4441 7.178628 GGGTCATAGACTCATAGTAAATAGGCA 59.821 40.741 0.00 0.00 32.50 4.75
2365 4442 8.754080 GGTCATAGACTCATAGTAAATAGGCAT 58.246 37.037 0.00 0.00 32.47 4.40
2366 4443 9.579768 GTCATAGACTCATAGTAAATAGGCATG 57.420 37.037 0.00 0.00 0.00 4.06
2367 4444 8.253810 TCATAGACTCATAGTAAATAGGCATGC 58.746 37.037 9.90 9.90 0.00 4.06
2368 4445 6.425210 AGACTCATAGTAAATAGGCATGCA 57.575 37.500 21.36 0.00 0.00 3.96
2369 4446 6.830912 AGACTCATAGTAAATAGGCATGCAA 58.169 36.000 21.36 7.29 0.00 4.08
2370 4447 7.282585 AGACTCATAGTAAATAGGCATGCAAA 58.717 34.615 21.36 6.87 0.00 3.68
2371 4448 7.941238 AGACTCATAGTAAATAGGCATGCAAAT 59.059 33.333 21.36 9.18 0.00 2.32
2372 4449 8.469309 ACTCATAGTAAATAGGCATGCAAATT 57.531 30.769 21.36 14.90 0.00 1.82
2373 4450 8.917088 ACTCATAGTAAATAGGCATGCAAATTT 58.083 29.630 24.26 24.26 0.00 1.82
2379 4456 8.197439 AGTAAATAGGCATGCAAATTTAGAACC 58.803 33.333 25.25 17.72 0.00 3.62
2380 4457 6.796785 AATAGGCATGCAAATTTAGAACCT 57.203 33.333 21.36 4.98 0.00 3.50
2381 4458 6.796785 ATAGGCATGCAAATTTAGAACCTT 57.203 33.333 21.36 0.00 0.00 3.50
2382 4459 4.824289 AGGCATGCAAATTTAGAACCTTG 58.176 39.130 21.36 0.00 0.00 3.61
2383 4460 4.527816 AGGCATGCAAATTTAGAACCTTGA 59.472 37.500 21.36 0.00 0.00 3.02
2384 4461 4.866486 GGCATGCAAATTTAGAACCTTGAG 59.134 41.667 21.36 0.00 0.00 3.02
2385 4462 4.866486 GCATGCAAATTTAGAACCTTGAGG 59.134 41.667 14.21 0.00 42.17 3.86
2386 4463 5.413499 CATGCAAATTTAGAACCTTGAGGG 58.587 41.667 1.54 0.00 40.27 4.30
2402 4479 2.688538 GGTACCCTCCGACCCTCT 59.311 66.667 0.00 0.00 0.00 3.69
2403 4480 1.001376 GGTACCCTCCGACCCTCTT 59.999 63.158 0.00 0.00 0.00 2.85
2404 4481 0.616964 GGTACCCTCCGACCCTCTTT 60.617 60.000 0.00 0.00 0.00 2.52
2405 4482 1.342374 GGTACCCTCCGACCCTCTTTA 60.342 57.143 0.00 0.00 0.00 1.85
2406 4483 2.030371 GTACCCTCCGACCCTCTTTAG 58.970 57.143 0.00 0.00 0.00 1.85
2407 4484 0.412640 ACCCTCCGACCCTCTTTAGT 59.587 55.000 0.00 0.00 0.00 2.24
2408 4485 1.203275 ACCCTCCGACCCTCTTTAGTT 60.203 52.381 0.00 0.00 0.00 2.24
2409 4486 1.481363 CCCTCCGACCCTCTTTAGTTC 59.519 57.143 0.00 0.00 0.00 3.01
2410 4487 2.176889 CCTCCGACCCTCTTTAGTTCA 58.823 52.381 0.00 0.00 0.00 3.18
2411 4488 2.565834 CCTCCGACCCTCTTTAGTTCAA 59.434 50.000 0.00 0.00 0.00 2.69
2412 4489 3.586892 CTCCGACCCTCTTTAGTTCAAC 58.413 50.000 0.00 0.00 0.00 3.18
2413 4490 2.301009 TCCGACCCTCTTTAGTTCAACC 59.699 50.000 0.00 0.00 0.00 3.77
2414 4491 2.038033 CCGACCCTCTTTAGTTCAACCA 59.962 50.000 0.00 0.00 0.00 3.67
2415 4492 3.495453 CCGACCCTCTTTAGTTCAACCAA 60.495 47.826 0.00 0.00 0.00 3.67
2416 4493 4.131596 CGACCCTCTTTAGTTCAACCAAA 58.868 43.478 0.00 0.00 0.00 3.28
2417 4494 4.760204 CGACCCTCTTTAGTTCAACCAAAT 59.240 41.667 0.00 0.00 0.00 2.32
2418 4495 5.334879 CGACCCTCTTTAGTTCAACCAAATG 60.335 44.000 0.00 0.00 0.00 2.32
2419 4496 5.701224 ACCCTCTTTAGTTCAACCAAATGA 58.299 37.500 0.00 0.00 0.00 2.57
2420 4497 6.133356 ACCCTCTTTAGTTCAACCAAATGAA 58.867 36.000 0.00 0.00 36.99 2.57
2432 4509 8.885494 TTCAACCAAATGAACTAAATTTCCAG 57.115 30.769 0.00 0.00 34.50 3.86
2433 4510 6.928492 TCAACCAAATGAACTAAATTTCCAGC 59.072 34.615 0.00 0.00 0.00 4.85
2434 4511 5.469479 ACCAAATGAACTAAATTTCCAGCG 58.531 37.500 0.00 0.00 0.00 5.18
2435 4512 5.010617 ACCAAATGAACTAAATTTCCAGCGT 59.989 36.000 0.00 0.00 0.00 5.07
2436 4513 5.925969 CCAAATGAACTAAATTTCCAGCGTT 59.074 36.000 0.00 0.00 0.00 4.84
2437 4514 6.089417 CCAAATGAACTAAATTTCCAGCGTTC 59.911 38.462 0.00 2.70 33.34 3.95
2438 4515 5.957842 ATGAACTAAATTTCCAGCGTTCA 57.042 34.783 15.66 15.66 43.04 3.18
2439 4516 5.103290 TGAACTAAATTTCCAGCGTTCAC 57.897 39.130 0.00 0.00 36.72 3.18
2440 4517 4.819630 TGAACTAAATTTCCAGCGTTCACT 59.180 37.500 0.00 0.00 36.72 3.41
2441 4518 5.298276 TGAACTAAATTTCCAGCGTTCACTT 59.702 36.000 0.00 0.00 36.72 3.16
2442 4519 5.767816 ACTAAATTTCCAGCGTTCACTTT 57.232 34.783 0.00 0.00 0.00 2.66
2443 4520 6.870971 ACTAAATTTCCAGCGTTCACTTTA 57.129 33.333 0.00 0.00 0.00 1.85
2444 4521 7.448748 ACTAAATTTCCAGCGTTCACTTTAT 57.551 32.000 0.00 0.00 0.00 1.40
2445 4522 7.882179 ACTAAATTTCCAGCGTTCACTTTATT 58.118 30.769 0.00 0.00 0.00 1.40
2446 4523 8.357402 ACTAAATTTCCAGCGTTCACTTTATTT 58.643 29.630 0.00 0.00 0.00 1.40
2447 4524 9.191995 CTAAATTTCCAGCGTTCACTTTATTTT 57.808 29.630 0.00 0.00 0.00 1.82
2448 4525 8.432110 AAATTTCCAGCGTTCACTTTATTTTT 57.568 26.923 0.00 0.00 0.00 1.94
2449 4526 6.820470 TTTCCAGCGTTCACTTTATTTTTG 57.180 33.333 0.00 0.00 0.00 2.44
2450 4527 5.759506 TCCAGCGTTCACTTTATTTTTGA 57.240 34.783 0.00 0.00 0.00 2.69
2451 4528 6.137794 TCCAGCGTTCACTTTATTTTTGAA 57.862 33.333 0.00 0.00 0.00 2.69
2452 4529 6.565234 TCCAGCGTTCACTTTATTTTTGAAA 58.435 32.000 0.00 0.00 31.21 2.69
2453 4530 6.474102 TCCAGCGTTCACTTTATTTTTGAAAC 59.526 34.615 0.00 0.00 31.21 2.78
2454 4531 6.475402 CCAGCGTTCACTTTATTTTTGAAACT 59.525 34.615 0.00 0.00 31.21 2.66
2455 4532 7.010091 CCAGCGTTCACTTTATTTTTGAAACTT 59.990 33.333 0.00 0.00 31.21 2.66
2456 4533 8.050170 CAGCGTTCACTTTATTTTTGAAACTTC 58.950 33.333 0.00 0.00 31.21 3.01
2457 4534 7.757624 AGCGTTCACTTTATTTTTGAAACTTCA 59.242 29.630 0.00 0.00 31.21 3.02
2458 4535 8.050170 GCGTTCACTTTATTTTTGAAACTTCAG 58.950 33.333 0.00 0.00 38.61 3.02
2459 4536 9.072294 CGTTCACTTTATTTTTGAAACTTCAGT 57.928 29.630 0.00 0.00 38.61 3.41
2489 4566 9.537852 TTTAGTTGAACTATAAGTAGGGTCAGA 57.462 33.333 5.81 0.00 31.66 3.27
2490 4567 7.648039 AGTTGAACTATAAGTAGGGTCAGAG 57.352 40.000 0.00 0.00 31.66 3.35
2491 4568 6.608002 AGTTGAACTATAAGTAGGGTCAGAGG 59.392 42.308 0.00 0.00 31.66 3.69
2492 4569 5.455872 TGAACTATAAGTAGGGTCAGAGGG 58.544 45.833 0.00 0.00 31.96 4.30
2493 4570 5.043582 TGAACTATAAGTAGGGTCAGAGGGT 60.044 44.000 0.00 0.00 31.96 4.34
2494 4571 6.160992 TGAACTATAAGTAGGGTCAGAGGGTA 59.839 42.308 0.00 0.00 31.96 3.69
2495 4572 5.951204 ACTATAAGTAGGGTCAGAGGGTAC 58.049 45.833 0.00 0.00 31.96 3.34
2496 4573 5.163001 ACTATAAGTAGGGTCAGAGGGTACC 60.163 48.000 2.17 2.17 39.89 3.34
2516 4593 4.615588 CCCTAAAGGTTCCAAATTTGCA 57.384 40.909 12.92 0.00 0.00 4.08
2517 4594 5.164620 CCCTAAAGGTTCCAAATTTGCAT 57.835 39.130 12.92 0.00 0.00 3.96
2518 4595 5.178061 CCCTAAAGGTTCCAAATTTGCATC 58.822 41.667 12.92 1.91 0.00 3.91
2519 4596 5.178061 CCTAAAGGTTCCAAATTTGCATCC 58.822 41.667 12.92 6.88 0.00 3.51
2520 4597 3.701205 AAGGTTCCAAATTTGCATCCC 57.299 42.857 12.92 9.03 0.00 3.85
2521 4598 2.906568 AGGTTCCAAATTTGCATCCCT 58.093 42.857 12.92 10.99 0.00 4.20
2522 4599 4.059773 AGGTTCCAAATTTGCATCCCTA 57.940 40.909 12.92 0.00 0.00 3.53
2523 4600 4.424842 AGGTTCCAAATTTGCATCCCTAA 58.575 39.130 12.92 0.00 0.00 2.69
2524 4601 5.032170 AGGTTCCAAATTTGCATCCCTAAT 58.968 37.500 12.92 0.00 0.00 1.73
2578 6787 6.243148 TCTACCCTCCACAAAAACTAATTCC 58.757 40.000 0.00 0.00 0.00 3.01
2589 6798 9.030301 CACAAAAACTAATTCCGAATTGTTTCT 57.970 29.630 21.55 13.30 34.31 2.52
2645 6880 8.042944 ACATTGTGAAAGAAGCAAACAATTTT 57.957 26.923 0.00 0.00 38.94 1.82
2646 6881 8.513774 ACATTGTGAAAGAAGCAAACAATTTTT 58.486 25.926 0.00 0.00 38.94 1.94
2647 6882 9.002080 CATTGTGAAAGAAGCAAACAATTTTTC 57.998 29.630 0.00 0.00 38.94 2.29
2705 6941 5.764686 TGTATCTTCATGCTTTCACAGTGTT 59.235 36.000 0.00 0.00 0.00 3.32
2708 6944 6.486253 TCTTCATGCTTTCACAGTGTTATC 57.514 37.500 0.00 0.00 0.00 1.75
2716 6952 5.352569 GCTTTCACAGTGTTATCTATGCACT 59.647 40.000 0.00 0.00 43.37 4.40
2749 6985 3.754965 ACAGCTTTTGAGCACCAATAGA 58.245 40.909 11.43 0.00 36.37 1.98
2794 7045 2.801996 CATGCTTTGCACGCCGTG 60.802 61.111 13.95 13.95 43.04 4.94
2797 7048 4.264638 GCTTTGCACGCCGTGGTT 62.265 61.111 20.07 0.00 33.64 3.67
2798 7049 2.353376 CTTTGCACGCCGTGGTTG 60.353 61.111 20.07 0.00 33.64 3.77
2799 7050 4.560856 TTTGCACGCCGTGGTTGC 62.561 61.111 20.07 4.78 33.64 4.17
2824 7082 3.893326 AGCACTTTTGAGTTGCCTTTT 57.107 38.095 0.00 0.00 0.00 2.27
2825 7083 3.524541 AGCACTTTTGAGTTGCCTTTTG 58.475 40.909 0.00 0.00 0.00 2.44
2828 7086 4.747810 CACTTTTGAGTTGCCTTTTGAGT 58.252 39.130 0.00 0.00 0.00 3.41
2831 7089 5.417580 ACTTTTGAGTTGCCTTTTGAGTGTA 59.582 36.000 0.00 0.00 0.00 2.90
2998 7258 8.887036 AATTTGGAAAGAAGGATACAAACAAC 57.113 30.769 0.00 0.00 41.41 3.32
2999 7259 7.411486 TTTGGAAAGAAGGATACAAACAACA 57.589 32.000 0.00 0.00 41.41 3.33
3074 7347 6.318648 GGTATCATGTCCATGTGTACACAAAT 59.681 38.462 31.01 14.38 45.41 2.32
3083 7356 6.552859 CATGTGTACACAAATGGAACTGTA 57.447 37.500 31.01 4.54 45.41 2.74
3126 7399 4.060205 GCGGTACACAGAGGTAAGAAAAA 58.940 43.478 0.00 0.00 0.00 1.94
3127 7400 4.694037 GCGGTACACAGAGGTAAGAAAAAT 59.306 41.667 0.00 0.00 0.00 1.82
3169 7447 4.425180 TTGTGGCTGTGGTTCTAACTTA 57.575 40.909 0.00 0.00 0.00 2.24
3183 7461 6.304882 GTTCTAACTTACAAGCGGTTTGATC 58.695 40.000 11.67 0.00 39.21 2.92
3200 7478 3.033909 TGATCACTATGGTGTCCTCCTG 58.966 50.000 9.23 0.00 43.41 3.86
3202 7480 2.457598 TCACTATGGTGTCCTCCTGTC 58.542 52.381 9.23 0.00 43.41 3.51
3219 7497 4.021807 TCCTGTCGAGTAGTGCATTTAACA 60.022 41.667 0.00 0.00 0.00 2.41
3359 7637 2.069273 CTCTGCAAGAACCCGTAAGTG 58.931 52.381 0.00 0.00 46.34 3.16
3370 7668 1.396996 CCCGTAAGTGCCATCTTTTCG 59.603 52.381 0.00 0.00 0.00 3.46
3375 7673 3.904136 AAGTGCCATCTTTTCGTCTTG 57.096 42.857 0.00 0.00 0.00 3.02
3382 7680 4.024048 GCCATCTTTTCGTCTTGTTCTTCA 60.024 41.667 0.00 0.00 0.00 3.02
3406 7704 8.807118 TCAGTTGACAGTCTCTTATTGTTCTAT 58.193 33.333 1.31 0.00 0.00 1.98
3424 7722 8.634475 TGTTCTATGATCTGAACTCATTTACG 57.366 34.615 19.46 0.00 41.99 3.18
3433 7731 6.046593 TCTGAACTCATTTACGTTGTTCTGT 58.953 36.000 0.00 0.00 38.17 3.41
3482 7780 3.087031 CACCTTCTTCATCCACTGCAAT 58.913 45.455 0.00 0.00 0.00 3.56
3658 7956 8.208718 TGATGAAAGATACCGTTATTTTGGAG 57.791 34.615 0.00 0.00 0.00 3.86
3661 7959 6.943718 TGAAAGATACCGTTATTTTGGAGGTT 59.056 34.615 0.00 0.00 36.49 3.50
3703 8001 6.213600 ACATAGTATAACTATCCCCTGGCTTG 59.786 42.308 0.00 0.00 39.26 4.01
3788 8086 3.054802 CAGGTTGAGATTGCCTTAGAGGT 60.055 47.826 0.00 0.00 37.80 3.85
3801 8099 4.102681 GCCTTAGAGGTAGATTAAGGGCAA 59.897 45.833 10.54 0.00 42.31 4.52
3802 8100 5.397559 GCCTTAGAGGTAGATTAAGGGCAAA 60.398 44.000 10.54 0.00 42.31 3.68
3803 8101 6.056236 CCTTAGAGGTAGATTAAGGGCAAAC 58.944 44.000 2.33 0.00 39.70 2.93
3804 8102 4.505324 AGAGGTAGATTAAGGGCAAACC 57.495 45.455 0.00 0.00 40.67 3.27
3904 8205 8.006298 ACACATCACCAACAATTTTCTTCTTA 57.994 30.769 0.00 0.00 0.00 2.10
3979 8280 2.533266 TGCGAATAGAGAGATTGCCC 57.467 50.000 0.00 0.00 0.00 5.36
4022 8328 0.444260 GCGAAGGTAGTGCTTGCTTC 59.556 55.000 0.00 0.00 0.00 3.86
4062 8368 1.180029 CCTTTGCCCTGACCATTCTG 58.820 55.000 0.00 0.00 0.00 3.02
4075 8381 3.698040 GACCATTCTGTTGATGGCTTCAT 59.302 43.478 3.72 0.00 38.99 2.57
4082 8388 4.834496 TCTGTTGATGGCTTCATCCTTTTT 59.166 37.500 3.72 0.00 44.97 1.94
4089 8395 7.225725 TGATGGCTTCATCCTTTTTGAATTTT 58.774 30.769 0.00 0.00 44.97 1.82
4128 8434 0.550147 AGGAGCATGTGGGTTAGGGT 60.550 55.000 0.00 0.00 0.00 4.34
4144 8450 6.888088 GGGTTAGGGTTTAGAAAATAGAAGCA 59.112 38.462 0.00 0.00 0.00 3.91
4146 8452 7.067129 GGTTAGGGTTTAGAAAATAGAAGCAGG 59.933 40.741 0.00 0.00 0.00 4.85
4149 8455 4.201920 GGTTTAGAAAATAGAAGCAGGCGG 60.202 45.833 0.00 0.00 0.00 6.13
4199 8508 3.243336 GTTAGTACACCGTGCTGAAGAG 58.757 50.000 0.00 0.00 30.04 2.85
4201 8510 2.171840 AGTACACCGTGCTGAAGAGAT 58.828 47.619 0.00 0.00 0.00 2.75
4209 8518 2.419297 CGTGCTGAAGAGATTAAGGCCT 60.419 50.000 0.00 0.00 0.00 5.19
4229 8538 0.394899 GAGGGTGGGATTCAAGGCAG 60.395 60.000 0.00 0.00 0.00 4.85
4232 8541 0.038166 GGTGGGATTCAAGGCAGTCA 59.962 55.000 0.00 0.00 0.00 3.41
4233 8542 1.547675 GGTGGGATTCAAGGCAGTCAA 60.548 52.381 0.00 0.00 0.00 3.18
4234 8543 2.238521 GTGGGATTCAAGGCAGTCAAA 58.761 47.619 0.00 0.00 0.00 2.69
4235 8544 2.029918 GTGGGATTCAAGGCAGTCAAAC 60.030 50.000 0.00 0.00 0.00 2.93
4283 8603 1.930567 CTTATGCAATGCAACCCAGC 58.069 50.000 13.45 0.00 43.62 4.85
4349 8669 2.639970 TGCCACACACATTGTAGGC 58.360 52.632 12.63 12.63 45.46 3.93
4350 8670 1.233950 TGCCACACACATTGTAGGCG 61.234 55.000 13.94 0.00 46.91 5.52
4351 8671 0.953471 GCCACACACATTGTAGGCGA 60.953 55.000 6.29 0.00 40.38 5.54
4352 8672 1.518325 CCACACACATTGTAGGCGAA 58.482 50.000 0.00 0.00 35.67 4.70
4353 8673 1.876799 CCACACACATTGTAGGCGAAA 59.123 47.619 0.00 0.00 35.67 3.46
4355 8675 3.057596 CCACACACATTGTAGGCGAAATT 60.058 43.478 0.00 0.00 35.67 1.82
4358 8678 6.037720 CCACACACATTGTAGGCGAAATTATA 59.962 38.462 0.00 0.00 35.67 0.98
4360 8680 7.428183 CACACACATTGTAGGCGAAATTATAAC 59.572 37.037 0.00 0.00 35.67 1.89
4361 8681 7.335924 ACACACATTGTAGGCGAAATTATAACT 59.664 33.333 0.00 0.00 36.32 2.24
4362 8682 7.639850 CACACATTGTAGGCGAAATTATAACTG 59.360 37.037 0.00 0.00 0.00 3.16
4367 8694 5.517411 TGTAGGCGAAATTATAACTGTGTCG 59.483 40.000 0.00 0.00 0.00 4.35
4396 8725 8.935844 CAAAGCCTTGTTTAAGAAAGAAAAACT 58.064 29.630 0.00 0.00 35.92 2.66
4442 8771 2.942804 TGACAACCAGATTGCCTTGAA 58.057 42.857 0.00 0.00 42.62 2.69
4447 8776 1.027357 CCAGATTGCCTTGAATCCCG 58.973 55.000 0.00 0.00 33.46 5.14
4465 8794 2.391389 GCCCTCAGCCGTTTCTTCG 61.391 63.158 0.00 0.00 34.35 3.79
4466 8795 1.292223 CCCTCAGCCGTTTCTTCGA 59.708 57.895 0.00 0.00 0.00 3.71
4468 8797 1.344942 CCTCAGCCGTTTCTTCGACG 61.345 60.000 0.00 0.00 40.05 5.12
4485 8814 3.441222 TCGACGGTACTGTGATGTAACAT 59.559 43.478 13.27 0.00 30.95 2.71
4490 8819 3.945285 GGTACTGTGATGTAACATTGGGG 59.055 47.826 0.00 0.00 30.95 4.96
4535 8864 9.862371 CTACTTCTATTTTCTAAGCTCTGAACA 57.138 33.333 0.00 0.00 0.00 3.18
4555 8887 4.922206 ACAATATGCTCCTTGTTCTTGGA 58.078 39.130 0.00 0.00 31.74 3.53
4575 8907 5.636123 TGGACTTAGCATCCAAAGGTAAAA 58.364 37.500 0.00 0.00 43.43 1.52
4593 8925 7.264947 AGGTAAAATTATCAAAAGAATGGCCG 58.735 34.615 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.242053 CACAAGAAGAGCACATGATAAATTCTT 58.758 33.333 0.00 6.91 36.47 2.52
21 22 0.035881 CCTCCTGCACAAGAAGAGCA 59.964 55.000 0.00 0.00 41.66 4.26
46 47 3.218470 GGCTTGCACACCACTGCA 61.218 61.111 0.00 0.00 45.59 4.41
80 81 0.172352 CTCCAGGCTCGACTCTTGTC 59.828 60.000 0.00 0.00 39.70 3.18
94 96 3.056322 CCAAGCTCCAAATTTTCCTCCAG 60.056 47.826 0.00 0.00 0.00 3.86
208 211 3.864789 AGCAGAAGGGGTATGTATTGG 57.135 47.619 0.00 0.00 0.00 3.16
216 219 2.637872 GGCATACATAGCAGAAGGGGTA 59.362 50.000 0.00 0.00 0.00 3.69
241 247 1.549037 GGCCACCACCTCCATTTTGTA 60.549 52.381 0.00 0.00 0.00 2.41
277 283 9.479549 ACCATCAATTTCACATATTTAGGTCTT 57.520 29.630 0.00 0.00 0.00 3.01
379 472 3.316308 CCTGCCTCCTTTTCCGAAATATG 59.684 47.826 0.00 0.00 0.00 1.78
413 507 1.936547 CGATGGCTCCTAAAAGCACTC 59.063 52.381 0.00 0.00 44.35 3.51
517 620 3.244422 ACCATCGGCTCAAGTTTAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
518 621 2.301870 ACCATCGGCTCAAGTTTAGTGA 59.698 45.455 0.00 0.00 0.00 3.41
519 622 2.699954 ACCATCGGCTCAAGTTTAGTG 58.300 47.619 0.00 0.00 0.00 2.74
520 623 4.546829 TTACCATCGGCTCAAGTTTAGT 57.453 40.909 0.00 0.00 0.00 2.24
521 624 5.873179 TTTTACCATCGGCTCAAGTTTAG 57.127 39.130 0.00 0.00 0.00 1.85
522 625 6.127842 GGATTTTTACCATCGGCTCAAGTTTA 60.128 38.462 0.00 0.00 0.00 2.01
523 626 5.336451 GGATTTTTACCATCGGCTCAAGTTT 60.336 40.000 0.00 0.00 0.00 2.66
524 627 4.157840 GGATTTTTACCATCGGCTCAAGTT 59.842 41.667 0.00 0.00 0.00 2.66
525 628 3.694566 GGATTTTTACCATCGGCTCAAGT 59.305 43.478 0.00 0.00 0.00 3.16
653 756 7.254117 CGGATAGATCATATATCGGCAACAAAC 60.254 40.741 0.00 0.00 31.58 2.93
655 758 6.127451 ACGGATAGATCATATATCGGCAACAA 60.127 38.462 6.74 0.00 34.85 2.83
660 763 8.867112 TTTAAACGGATAGATCATATATCGGC 57.133 34.615 6.74 0.00 34.85 5.54
673 776 7.884816 TGAGAGAGTGTTTTTAAACGGATAG 57.115 36.000 1.35 0.00 41.74 2.08
675 778 7.745620 AATGAGAGAGTGTTTTTAAACGGAT 57.254 32.000 1.35 0.00 41.74 4.18
688 791 8.441608 CAACAAGAACTATGAAATGAGAGAGTG 58.558 37.037 0.00 0.00 0.00 3.51
690 793 8.441608 CACAACAAGAACTATGAAATGAGAGAG 58.558 37.037 0.00 0.00 0.00 3.20
833 936 0.872021 GGAGGTTCGCGTATCAGCTG 60.872 60.000 7.63 7.63 34.40 4.24
837 940 2.802792 CGGGAGGTTCGCGTATCA 59.197 61.111 5.77 0.00 45.92 2.15
1157 1464 2.440247 GATTCCAAGGGTGGCCGG 60.440 66.667 0.00 0.00 45.54 6.13
1175 1482 1.267121 CGAGAAGAAGAGGGGGTTCA 58.733 55.000 0.00 0.00 0.00 3.18
1236 1545 4.780815 AGACAGTGGAGTGATTTTGAACA 58.219 39.130 0.00 0.00 0.00 3.18
1273 1586 5.104374 CAGTTAGGAATTTTGCATCGCATT 58.896 37.500 0.00 0.00 38.76 3.56
1277 1590 4.701956 ACCAGTTAGGAATTTTGCATCG 57.298 40.909 0.00 0.00 41.22 3.84
1355 1678 6.154445 CCTGAAAATCACCAACAATTCAGAG 58.846 40.000 13.29 2.45 43.93 3.35
1356 1679 5.598005 ACCTGAAAATCACCAACAATTCAGA 59.402 36.000 13.29 0.00 43.93 3.27
1431 1754 1.389609 GGTAGGGCGAATCGACTGGA 61.390 60.000 8.91 0.00 34.07 3.86
1434 1757 1.673808 GGTGGTAGGGCGAATCGACT 61.674 60.000 8.91 6.99 34.07 4.18
1475 1798 4.333372 GGTAGAGAACAGAACTAGGACTCG 59.667 50.000 0.00 0.00 0.00 4.18
1483 1806 2.564947 CCTGCTGGTAGAGAACAGAACT 59.435 50.000 0.51 0.00 36.86 3.01
1484 1807 2.300437 ACCTGCTGGTAGAGAACAGAAC 59.700 50.000 14.47 0.00 46.43 3.01
1497 1820 2.442236 ATCCCATGTTAACCTGCTGG 57.558 50.000 8.29 8.29 39.83 4.85
1499 1822 4.677182 AGAAAATCCCATGTTAACCTGCT 58.323 39.130 2.48 0.00 0.00 4.24
1505 1828 7.723616 TCAGAACTGAAGAAAATCCCATGTTAA 59.276 33.333 1.79 0.00 36.53 2.01
1506 1829 7.230747 TCAGAACTGAAGAAAATCCCATGTTA 58.769 34.615 1.79 0.00 36.53 2.41
1523 1846 1.247567 AACCCGGCAATTCAGAACTG 58.752 50.000 0.00 0.00 0.00 3.16
1529 1853 0.321741 TCGCTAAACCCGGCAATTCA 60.322 50.000 0.00 0.00 0.00 2.57
1543 1867 4.212636 GGCGGCTTAAATTCTTATTCGCTA 59.787 41.667 0.00 0.00 40.36 4.26
1591 1968 9.276590 CTTGGTAGTATCATCATCTTATTGCAA 57.723 33.333 0.00 0.00 0.00 4.08
1754 2282 8.038944 GGGATACACATGACTTAGTAGAAACAA 58.961 37.037 0.00 0.00 39.74 2.83
1791 2320 6.365520 AGACCCAAATTCAGAGTTTGTAACT 58.634 36.000 15.22 9.09 46.38 2.24
1796 2325 6.396829 AGAAAGACCCAAATTCAGAGTTTG 57.603 37.500 10.72 10.72 36.55 2.93
1801 2330 7.066781 AGGTAAAAGAAAGACCCAAATTCAGA 58.933 34.615 0.00 0.00 33.40 3.27
2151 4227 2.163810 AACATATGCCCCATGTGCTT 57.836 45.000 1.58 2.83 36.63 3.91
2284 4361 7.972832 TTCTACATGAACCTGTCGTATTTTT 57.027 32.000 0.00 0.00 0.00 1.94
2290 4367 5.547465 TCATTTTCTACATGAACCTGTCGT 58.453 37.500 0.00 0.00 33.88 4.34
2308 4385 7.544804 AAGAAAATGGCTTACCTTCTCATTT 57.455 32.000 0.00 0.00 38.99 2.32
2347 4424 8.469309 AATTTGCATGCCTATTTACTATGAGT 57.531 30.769 16.68 0.00 0.00 3.41
2353 4430 8.197439 GGTTCTAAATTTGCATGCCTATTTACT 58.803 33.333 21.21 8.87 0.00 2.24
2354 4431 8.197439 AGGTTCTAAATTTGCATGCCTATTTAC 58.803 33.333 21.21 16.84 0.00 2.01
2355 4432 8.305046 AGGTTCTAAATTTGCATGCCTATTTA 57.695 30.769 22.55 22.55 0.00 1.40
2356 4433 7.186570 AGGTTCTAAATTTGCATGCCTATTT 57.813 32.000 22.68 22.68 0.00 1.40
2357 4434 6.796785 AGGTTCTAAATTTGCATGCCTATT 57.203 33.333 16.68 11.65 0.00 1.73
2358 4435 6.380846 TCAAGGTTCTAAATTTGCATGCCTAT 59.619 34.615 16.68 5.47 0.00 2.57
2359 4436 5.714333 TCAAGGTTCTAAATTTGCATGCCTA 59.286 36.000 16.68 2.87 0.00 3.93
2360 4437 4.527816 TCAAGGTTCTAAATTTGCATGCCT 59.472 37.500 16.68 0.00 0.00 4.75
2361 4438 4.819769 TCAAGGTTCTAAATTTGCATGCC 58.180 39.130 16.68 0.00 0.00 4.40
2362 4439 4.866486 CCTCAAGGTTCTAAATTTGCATGC 59.134 41.667 11.82 11.82 0.00 4.06
2363 4440 5.413499 CCCTCAAGGTTCTAAATTTGCATG 58.587 41.667 0.00 0.00 0.00 4.06
2364 4441 5.665916 CCCTCAAGGTTCTAAATTTGCAT 57.334 39.130 0.00 0.00 0.00 3.96
2386 4463 2.030371 CTAAAGAGGGTCGGAGGGTAC 58.970 57.143 0.00 0.00 0.00 3.34
2387 4464 1.642762 ACTAAAGAGGGTCGGAGGGTA 59.357 52.381 0.00 0.00 0.00 3.69
2388 4465 0.412640 ACTAAAGAGGGTCGGAGGGT 59.587 55.000 0.00 0.00 0.00 4.34
2389 4466 1.481363 GAACTAAAGAGGGTCGGAGGG 59.519 57.143 0.00 0.00 0.00 4.30
2390 4467 2.176889 TGAACTAAAGAGGGTCGGAGG 58.823 52.381 0.00 0.00 0.00 4.30
2391 4468 3.586892 GTTGAACTAAAGAGGGTCGGAG 58.413 50.000 0.00 0.00 0.00 4.63
2392 4469 2.301009 GGTTGAACTAAAGAGGGTCGGA 59.699 50.000 0.00 0.00 0.00 4.55
2393 4470 2.038033 TGGTTGAACTAAAGAGGGTCGG 59.962 50.000 0.00 0.00 0.00 4.79
2394 4471 3.396260 TGGTTGAACTAAAGAGGGTCG 57.604 47.619 0.00 0.00 0.00 4.79
2395 4472 5.768164 TCATTTGGTTGAACTAAAGAGGGTC 59.232 40.000 12.26 0.00 32.15 4.46
2396 4473 5.701224 TCATTTGGTTGAACTAAAGAGGGT 58.299 37.500 12.26 0.00 32.15 4.34
2397 4474 6.648879 TTCATTTGGTTGAACTAAAGAGGG 57.351 37.500 12.26 3.16 32.15 4.30
2407 4484 7.440856 GCTGGAAATTTAGTTCATTTGGTTGAA 59.559 33.333 0.00 0.00 33.32 2.69
2408 4485 6.928492 GCTGGAAATTTAGTTCATTTGGTTGA 59.072 34.615 0.00 0.00 0.00 3.18
2409 4486 6.128849 CGCTGGAAATTTAGTTCATTTGGTTG 60.129 38.462 0.00 0.00 0.00 3.77
2410 4487 5.925969 CGCTGGAAATTTAGTTCATTTGGTT 59.074 36.000 0.00 0.00 0.00 3.67
2411 4488 5.010617 ACGCTGGAAATTTAGTTCATTTGGT 59.989 36.000 0.00 0.00 0.00 3.67
2412 4489 5.469479 ACGCTGGAAATTTAGTTCATTTGG 58.531 37.500 0.00 0.00 0.00 3.28
2413 4490 6.640499 TGAACGCTGGAAATTTAGTTCATTTG 59.360 34.615 15.37 0.00 41.70 2.32
2414 4491 6.640907 GTGAACGCTGGAAATTTAGTTCATTT 59.359 34.615 19.11 0.00 45.98 2.32
2415 4492 6.016276 AGTGAACGCTGGAAATTTAGTTCATT 60.016 34.615 19.11 15.28 45.98 2.57
2416 4493 5.473504 AGTGAACGCTGGAAATTTAGTTCAT 59.526 36.000 19.11 11.31 45.98 2.57
2417 4494 4.819630 AGTGAACGCTGGAAATTTAGTTCA 59.180 37.500 15.37 15.37 43.50 3.18
2418 4495 5.358298 AGTGAACGCTGGAAATTTAGTTC 57.642 39.130 12.19 12.19 38.60 3.01
2419 4496 5.767816 AAGTGAACGCTGGAAATTTAGTT 57.232 34.783 0.00 0.00 0.00 2.24
2420 4497 5.767816 AAAGTGAACGCTGGAAATTTAGT 57.232 34.783 0.00 0.00 0.00 2.24
2421 4498 8.742554 AAATAAAGTGAACGCTGGAAATTTAG 57.257 30.769 0.00 0.00 0.00 1.85
2422 4499 9.535878 AAAAATAAAGTGAACGCTGGAAATTTA 57.464 25.926 0.00 0.00 0.00 1.40
2423 4500 8.334632 CAAAAATAAAGTGAACGCTGGAAATTT 58.665 29.630 0.00 0.00 0.00 1.82
2424 4501 7.708752 TCAAAAATAAAGTGAACGCTGGAAATT 59.291 29.630 0.00 0.00 0.00 1.82
2425 4502 7.206687 TCAAAAATAAAGTGAACGCTGGAAAT 58.793 30.769 0.00 0.00 0.00 2.17
2426 4503 6.565234 TCAAAAATAAAGTGAACGCTGGAAA 58.435 32.000 0.00 0.00 0.00 3.13
2427 4504 6.137794 TCAAAAATAAAGTGAACGCTGGAA 57.862 33.333 0.00 0.00 0.00 3.53
2428 4505 5.759506 TCAAAAATAAAGTGAACGCTGGA 57.240 34.783 0.00 0.00 0.00 3.86
2429 4506 6.475402 AGTTTCAAAAATAAAGTGAACGCTGG 59.525 34.615 0.00 0.00 31.21 4.85
2430 4507 7.449934 AGTTTCAAAAATAAAGTGAACGCTG 57.550 32.000 0.00 0.00 31.21 5.18
2431 4508 7.757624 TGAAGTTTCAAAAATAAAGTGAACGCT 59.242 29.630 0.00 0.00 33.55 5.07
2432 4509 7.890763 TGAAGTTTCAAAAATAAAGTGAACGC 58.109 30.769 0.00 0.00 33.55 4.84
2433 4510 9.072294 ACTGAAGTTTCAAAAATAAAGTGAACG 57.928 29.630 0.00 0.00 36.64 3.95
2463 4540 9.537852 TCTGACCCTACTTATAGTTCAACTAAA 57.462 33.333 0.16 0.00 33.89 1.85
2464 4541 9.186837 CTCTGACCCTACTTATAGTTCAACTAA 57.813 37.037 0.16 0.00 33.89 2.24
2465 4542 7.778853 CCTCTGACCCTACTTATAGTTCAACTA 59.221 40.741 0.00 0.00 34.82 2.24
2466 4543 6.608002 CCTCTGACCCTACTTATAGTTCAACT 59.392 42.308 0.00 0.00 0.00 3.16
2467 4544 6.183360 CCCTCTGACCCTACTTATAGTTCAAC 60.183 46.154 0.00 0.00 0.00 3.18
2468 4545 5.897824 CCCTCTGACCCTACTTATAGTTCAA 59.102 44.000 0.00 0.00 0.00 2.69
2469 4546 5.043582 ACCCTCTGACCCTACTTATAGTTCA 60.044 44.000 0.00 0.00 0.00 3.18
2470 4547 5.456779 ACCCTCTGACCCTACTTATAGTTC 58.543 45.833 0.00 0.00 0.00 3.01
2471 4548 5.484734 ACCCTCTGACCCTACTTATAGTT 57.515 43.478 0.00 0.00 0.00 2.24
2472 4549 5.163001 GGTACCCTCTGACCCTACTTATAGT 60.163 48.000 0.00 0.00 0.00 2.12
2473 4550 5.323581 GGTACCCTCTGACCCTACTTATAG 58.676 50.000 0.00 0.00 0.00 1.31
2474 4551 5.330648 GGTACCCTCTGACCCTACTTATA 57.669 47.826 0.00 0.00 0.00 0.98
2475 4552 4.196118 GGTACCCTCTGACCCTACTTAT 57.804 50.000 0.00 0.00 0.00 1.73
2476 4553 3.677156 GGTACCCTCTGACCCTACTTA 57.323 52.381 0.00 0.00 0.00 2.24
2477 4554 2.546652 GGTACCCTCTGACCCTACTT 57.453 55.000 0.00 0.00 0.00 2.24
2495 4572 4.615588 TGCAAATTTGGAACCTTTAGGG 57.384 40.909 19.47 0.00 40.27 3.53
2496 4573 5.178061 GGATGCAAATTTGGAACCTTTAGG 58.822 41.667 25.41 0.00 38.21 2.69
2497 4574 5.046376 AGGGATGCAAATTTGGAACCTTTAG 60.046 40.000 29.24 0.52 40.49 1.85
2498 4575 4.843516 AGGGATGCAAATTTGGAACCTTTA 59.156 37.500 29.24 0.00 40.49 1.85
2499 4576 3.652387 AGGGATGCAAATTTGGAACCTTT 59.348 39.130 29.24 19.12 40.49 3.11
2500 4577 3.250617 AGGGATGCAAATTTGGAACCTT 58.749 40.909 29.24 23.06 40.49 3.50
2501 4578 2.906568 AGGGATGCAAATTTGGAACCT 58.093 42.857 29.24 26.66 40.49 3.50
2502 4579 4.817318 TTAGGGATGCAAATTTGGAACC 57.183 40.909 24.91 24.91 40.04 3.62
2503 4580 7.112452 ACTATTAGGGATGCAAATTTGGAAC 57.888 36.000 16.71 13.58 30.51 3.62
2504 4581 8.830915 TTACTATTAGGGATGCAAATTTGGAA 57.169 30.769 16.71 0.00 30.51 3.53
2505 4582 8.830915 TTTACTATTAGGGATGCAAATTTGGA 57.169 30.769 19.47 17.40 0.00 3.53
2513 4590 9.725019 CACAATCTATTTACTATTAGGGATGCA 57.275 33.333 0.00 0.00 0.00 3.96
2514 4591 8.669243 GCACAATCTATTTACTATTAGGGATGC 58.331 37.037 0.00 0.00 0.00 3.91
2515 4592 9.950496 AGCACAATCTATTTACTATTAGGGATG 57.050 33.333 0.00 0.00 0.00 3.51
2551 6760 8.541899 AATTAGTTTTTGTGGAGGGTAGAAAA 57.458 30.769 0.00 0.00 0.00 2.29
2578 6787 8.673626 AGCAATATTTGTACAGAAACAATTCG 57.326 30.769 0.00 0.00 39.04 3.34
2589 6798 9.151471 GAGTTCAGTTCTAGCAATATTTGTACA 57.849 33.333 0.00 0.00 0.00 2.90
2705 6941 5.847111 ACCAACTACGAAGTGCATAGATA 57.153 39.130 0.00 0.00 45.73 1.98
2708 6944 4.740268 TGTACCAACTACGAAGTGCATAG 58.260 43.478 0.00 0.00 45.73 2.23
2716 6952 4.695396 TCAAAAGCTGTACCAACTACGAA 58.305 39.130 0.00 0.00 0.00 3.85
2798 7049 2.919807 GCAACTCAAAAGTGCTAGCAGC 60.920 50.000 20.03 13.17 42.82 5.25
2799 7050 2.351157 GGCAACTCAAAAGTGCTAGCAG 60.351 50.000 20.03 6.07 35.36 4.24
2998 7258 3.606595 TCAGAGTTCTGCTTCCAGATG 57.393 47.619 4.25 0.00 46.84 2.90
2999 7259 3.773667 TCATCAGAGTTCTGCTTCCAGAT 59.226 43.478 4.25 0.00 46.84 2.90
3141 7414 3.056607 AGAACCACAGCCACAAATATTGC 60.057 43.478 0.00 0.00 0.00 3.56
3142 7415 4.789012 AGAACCACAGCCACAAATATTG 57.211 40.909 0.00 0.00 0.00 1.90
3146 7424 3.832527 AGTTAGAACCACAGCCACAAAT 58.167 40.909 0.00 0.00 0.00 2.32
3169 7447 3.009723 CCATAGTGATCAAACCGCTTGT 58.990 45.455 0.00 0.00 36.34 3.16
3183 7461 5.039524 CTCGACAGGAGGACACCATAGTG 62.040 56.522 0.00 0.00 43.41 2.74
3200 7478 5.860182 TGTACTGTTAAATGCACTACTCGAC 59.140 40.000 0.00 0.00 0.00 4.20
3202 7480 6.887376 ATGTACTGTTAAATGCACTACTCG 57.113 37.500 0.00 0.00 0.00 4.18
3219 7497 2.772515 GGAAGAAGGCAGGGTATGTACT 59.227 50.000 0.00 0.00 0.00 2.73
3359 7637 4.024048 TGAAGAACAAGACGAAAAGATGGC 60.024 41.667 0.00 0.00 0.00 4.40
3370 7668 5.112686 AGACTGTCAACTGAAGAACAAGAC 58.887 41.667 10.88 0.00 0.00 3.01
3375 7673 7.439655 ACAATAAGAGACTGTCAACTGAAGAAC 59.560 37.037 10.88 0.00 0.00 3.01
3382 7680 8.807118 TCATAGAACAATAAGAGACTGTCAACT 58.193 33.333 10.88 6.17 0.00 3.16
3406 7704 6.929049 AGAACAACGTAAATGAGTTCAGATCA 59.071 34.615 0.00 0.00 40.63 2.92
3433 7731 1.136695 CCTGCTGAAACAACCTGCAAA 59.863 47.619 0.00 0.00 37.87 3.68
3628 7926 3.185246 ACGGTATCTTTCATCAGCTGG 57.815 47.619 15.13 0.00 0.00 4.85
3703 8001 0.249911 AGTTGGCGTCAGACAGAACC 60.250 55.000 0.41 0.00 36.30 3.62
3788 8086 5.222048 ACACTCTTGGTTTGCCCTTAATCTA 60.222 40.000 0.00 0.00 0.00 1.98
3801 8099 0.839946 ACAGCAGGACACTCTTGGTT 59.160 50.000 0.00 0.00 31.67 3.67
3802 8100 1.344763 GTACAGCAGGACACTCTTGGT 59.655 52.381 0.00 0.00 34.43 3.67
3803 8101 1.620819 AGTACAGCAGGACACTCTTGG 59.379 52.381 0.00 0.00 0.00 3.61
3804 8102 2.036475 ACAGTACAGCAGGACACTCTTG 59.964 50.000 0.00 0.00 0.00 3.02
3904 8205 7.763528 TCACTGCACTGTTTTTATGAACATTTT 59.236 29.630 0.00 0.00 38.71 1.82
3963 8264 4.064388 GCTTCAGGGCAATCTCTCTATTC 58.936 47.826 0.00 0.00 0.00 1.75
3965 8266 3.044156 TGCTTCAGGGCAATCTCTCTAT 58.956 45.455 0.00 0.00 39.43 1.98
3979 8280 3.057736 CACAAGATGGTCCTTTGCTTCAG 60.058 47.826 0.00 0.00 0.00 3.02
4022 8328 2.871022 GCATCCTAACATCTGCACTCAG 59.129 50.000 0.00 0.00 41.67 3.35
4075 8381 5.239087 GCTTGGCATCAAAATTCAAAAAGGA 59.761 36.000 0.00 0.00 31.77 3.36
4082 8388 4.281435 TCTTGAGCTTGGCATCAAAATTCA 59.719 37.500 3.83 0.00 35.14 2.57
4089 8395 2.275134 TGTTCTTGAGCTTGGCATCA 57.725 45.000 0.00 0.00 0.00 3.07
4128 8434 3.377172 GCCGCCTGCTTCTATTTTCTAAA 59.623 43.478 0.00 0.00 36.87 1.85
4144 8450 1.826024 CCAGAGATAGTTGCCGCCT 59.174 57.895 0.00 0.00 0.00 5.52
4146 8452 1.153369 TGCCAGAGATAGTTGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
4149 8455 3.554752 GGAGATCTGCCAGAGATAGTTGC 60.555 52.174 0.00 0.00 41.91 4.17
4151 8457 3.640967 GTGGAGATCTGCCAGAGATAGTT 59.359 47.826 12.15 0.00 41.91 2.24
4199 8508 0.183731 CCCACCCTCAGGCCTTAATC 59.816 60.000 0.00 0.00 36.11 1.75
4201 8510 0.253630 ATCCCACCCTCAGGCCTTAA 60.254 55.000 0.00 0.00 36.11 1.85
4209 8518 1.139498 TGCCTTGAATCCCACCCTCA 61.139 55.000 0.00 0.00 0.00 3.86
4229 8538 1.166531 AGCACCTCGCCTTGTTTGAC 61.167 55.000 0.00 0.00 44.04 3.18
4232 8541 1.455383 CCAAGCACCTCGCCTTGTTT 61.455 55.000 0.00 0.00 44.04 2.83
4233 8542 1.898574 CCAAGCACCTCGCCTTGTT 60.899 57.895 0.00 0.00 44.04 2.83
4234 8543 2.281761 CCAAGCACCTCGCCTTGT 60.282 61.111 0.00 0.00 44.04 3.16
4235 8544 3.741476 GCCAAGCACCTCGCCTTG 61.741 66.667 0.00 0.00 44.04 3.61
4283 8603 5.712004 TGTGTCCACAAAATGCTTATGATG 58.288 37.500 0.00 0.00 38.56 3.07
4312 8632 4.273235 TGGCACATAAAACTCATGCTATCG 59.727 41.667 0.00 0.00 36.52 2.92
4332 8652 0.953471 TCGCCTACAATGTGTGTGGC 60.953 55.000 13.68 13.68 44.46 5.01
4341 8661 7.254319 CGACACAGTTATAATTTCGCCTACAAT 60.254 37.037 0.00 0.00 0.00 2.71
4343 8663 5.517411 CGACACAGTTATAATTTCGCCTACA 59.483 40.000 0.00 0.00 0.00 2.74
4345 8665 5.893687 TCGACACAGTTATAATTTCGCCTA 58.106 37.500 0.00 0.00 0.00 3.93
4346 8666 4.751060 TCGACACAGTTATAATTTCGCCT 58.249 39.130 0.00 0.00 0.00 5.52
4347 8667 5.233476 TGATCGACACAGTTATAATTTCGCC 59.767 40.000 0.00 0.00 0.00 5.54
4349 8669 7.370836 GCTTTGATCGACACAGTTATAATTTCG 59.629 37.037 0.00 0.00 0.00 3.46
4350 8670 7.640240 GGCTTTGATCGACACAGTTATAATTTC 59.360 37.037 0.00 0.00 0.00 2.17
4351 8671 7.336931 AGGCTTTGATCGACACAGTTATAATTT 59.663 33.333 0.00 0.00 0.00 1.82
4352 8672 6.823689 AGGCTTTGATCGACACAGTTATAATT 59.176 34.615 0.00 0.00 0.00 1.40
4353 8673 6.349300 AGGCTTTGATCGACACAGTTATAAT 58.651 36.000 0.00 0.00 0.00 1.28
4355 8675 5.339008 AGGCTTTGATCGACACAGTTATA 57.661 39.130 0.00 0.00 0.00 0.98
4358 8678 2.549754 CAAGGCTTTGATCGACACAGTT 59.450 45.455 1.58 0.00 36.36 3.16
4360 8680 2.146342 ACAAGGCTTTGATCGACACAG 58.854 47.619 16.36 0.00 37.73 3.66
4361 8681 2.254546 ACAAGGCTTTGATCGACACA 57.745 45.000 16.36 0.00 37.73 3.72
4362 8682 3.626028 AAACAAGGCTTTGATCGACAC 57.374 42.857 16.36 0.00 37.73 3.67
4367 8694 8.871686 TTTCTTTCTTAAACAAGGCTTTGATC 57.128 30.769 16.36 0.00 37.73 2.92
4396 8725 3.472652 AGGTGAAATGCTTACGTCACAA 58.527 40.909 0.00 0.00 41.75 3.33
4402 8731 4.675114 GTCAAACAAGGTGAAATGCTTACG 59.325 41.667 0.00 0.00 0.00 3.18
4447 8776 2.391389 CGAAGAAACGGCTGAGGGC 61.391 63.158 0.00 0.00 40.90 5.19
4465 8794 4.328983 CCAATGTTACATCACAGTACCGTC 59.671 45.833 0.00 0.00 0.00 4.79
4466 8795 4.250464 CCAATGTTACATCACAGTACCGT 58.750 43.478 0.00 0.00 0.00 4.83
4468 8797 3.945285 CCCCAATGTTACATCACAGTACC 59.055 47.826 0.00 0.00 0.00 3.34
4469 8798 3.945285 CCCCCAATGTTACATCACAGTAC 59.055 47.826 0.00 0.00 0.00 2.73
4535 8864 5.184892 AGTCCAAGAACAAGGAGCATATT 57.815 39.130 0.00 0.00 33.85 1.28
4538 8867 3.515602 AAGTCCAAGAACAAGGAGCAT 57.484 42.857 0.00 0.00 33.85 3.79
4539 8868 3.807209 GCTAAGTCCAAGAACAAGGAGCA 60.807 47.826 0.00 0.00 33.85 4.26
4555 8887 9.474313 TGATAATTTTACCTTTGGATGCTAAGT 57.526 29.630 7.55 0.00 0.00 2.24
4575 8907 2.365293 GCCCGGCCATTCTTTTGATAAT 59.635 45.455 2.24 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.