Multiple sequence alignment - TraesCS7A01G516100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G516100 chr7A 100.000 5967 0 0 1 5967 701312422 701306456 0.000000e+00 11020.0
1 TraesCS7A01G516100 chr7A 87.750 751 69 15 8 739 701312588 701313334 0.000000e+00 856.0
2 TraesCS7A01G516100 chr7A 92.063 126 10 0 3185 3310 192667929 192667804 1.710000e-40 178.0
3 TraesCS7A01G516100 chr7A 82.741 197 19 9 4978 5172 28816691 28816508 1.720000e-35 161.0
4 TraesCS7A01G516100 chr7A 82.741 197 19 9 4978 5172 28857845 28857662 1.720000e-35 161.0
5 TraesCS7A01G516100 chr7A 94.286 35 1 1 5723 5757 517576000 517575967 1.100000e-02 52.8
6 TraesCS7A01G516100 chr7B 90.865 2485 159 32 740 3189 700423293 700420842 0.000000e+00 3269.0
7 TraesCS7A01G516100 chr7B 88.616 1423 126 23 3578 4975 700420664 700419253 0.000000e+00 1698.0
8 TraesCS7A01G516100 chr7B 90.670 761 38 19 1 745 700424493 700423750 0.000000e+00 981.0
9 TraesCS7A01G516100 chr7B 86.184 760 78 18 8 744 700424582 700425337 0.000000e+00 797.0
10 TraesCS7A01G516100 chr7B 92.179 179 12 2 3310 3488 700420846 700420670 9.930000e-63 252.0
11 TraesCS7A01G516100 chr7B 92.969 128 9 0 3185 3312 327273059 327272932 2.840000e-43 187.0
12 TraesCS7A01G516100 chr7B 81.865 193 21 7 750 930 687546251 687546441 3.730000e-32 150.0
13 TraesCS7A01G516100 chr7B 97.297 37 1 0 5638 5674 700418632 700418596 4.990000e-06 63.9
14 TraesCS7A01G516100 chr7B 97.059 34 1 0 5641 5674 700418571 700418538 2.320000e-04 58.4
15 TraesCS7A01G516100 chr7D 91.312 2210 122 30 740 2913 611263927 611261752 0.000000e+00 2953.0
16 TraesCS7A01G516100 chr7D 91.383 882 55 11 5094 5967 611260112 611259244 0.000000e+00 1188.0
17 TraesCS7A01G516100 chr7D 92.121 825 60 4 3518 4340 611261379 611260558 0.000000e+00 1158.0
18 TraesCS7A01G516100 chr7D 89.460 759 54 11 1 745 611265170 611264424 0.000000e+00 935.0
19 TraesCS7A01G516100 chr7D 88.204 763 61 18 8 745 611265260 611266018 0.000000e+00 883.0
20 TraesCS7A01G516100 chr7D 91.542 201 14 3 3310 3509 611261694 611261496 2.120000e-69 274.0
21 TraesCS7A01G516100 chr7D 85.766 274 18 8 4716 4982 611260534 611260275 2.740000e-68 270.0
22 TraesCS7A01G516100 chr6A 86.190 1021 107 18 2193 3186 427452232 427451219 0.000000e+00 1074.0
23 TraesCS7A01G516100 chr6A 85.674 712 79 12 4264 4962 427450587 427449886 0.000000e+00 728.0
24 TraesCS7A01G516100 chr6A 89.691 485 38 8 3521 4003 427451075 427450601 5.110000e-170 608.0
25 TraesCS7A01G516100 chr6A 85.400 500 53 7 995 1493 427453184 427452704 8.930000e-138 501.0
26 TraesCS7A01G516100 chr6A 83.007 459 60 8 1686 2137 427452699 427452252 3.350000e-107 399.0
27 TraesCS7A01G516100 chr6A 85.864 191 25 2 4978 5167 427449783 427449594 1.010000e-47 202.0
28 TraesCS7A01G516100 chr6A 90.769 130 11 1 3182 3311 88080422 88080550 7.950000e-39 172.0
29 TraesCS7A01G516100 chr6A 100.000 28 0 0 5723 5750 33015670 33015643 1.100000e-02 52.8
30 TraesCS7A01G516100 chr6B 85.519 1022 110 18 2193 3186 457873786 457874797 0.000000e+00 1033.0
31 TraesCS7A01G516100 chr6B 86.860 586 66 7 4373 4956 457875785 457876361 0.000000e+00 645.0
32 TraesCS7A01G516100 chr6B 90.103 485 36 8 3521 4003 457874941 457875415 2.360000e-173 619.0
33 TraesCS7A01G516100 chr6B 87.952 498 58 2 995 1490 457872817 457873314 2.400000e-163 586.0
34 TraesCS7A01G516100 chr6B 82.415 472 65 10 1680 2145 457873316 457873775 4.330000e-106 396.0
35 TraesCS7A01G516100 chr6B 88.947 190 20 1 4978 5167 457876471 457876659 3.600000e-57 233.0
36 TraesCS7A01G516100 chr6B 92.308 130 9 1 3182 3311 146149466 146149594 3.670000e-42 183.0
37 TraesCS7A01G516100 chr6B 85.987 157 19 2 794 947 62389128 62388972 1.330000e-36 165.0
38 TraesCS7A01G516100 chr6B 85.625 160 20 2 791 947 715710246 715710405 1.330000e-36 165.0
39 TraesCS7A01G516100 chr6B 95.588 68 3 0 4299 4366 457875537 457875604 6.320000e-20 110.0
40 TraesCS7A01G516100 chr6D 85.552 969 113 14 2227 3173 293315608 293316571 0.000000e+00 989.0
41 TraesCS7A01G516100 chr6D 86.115 713 76 12 4264 4962 293317311 293318014 0.000000e+00 747.0
42 TraesCS7A01G516100 chr6D 90.103 485 36 8 3521 4003 293316823 293317297 2.360000e-173 619.0
43 TraesCS7A01G516100 chr6D 88.767 365 40 1 995 1358 293314879 293315243 4.240000e-121 446.0
44 TraesCS7A01G516100 chr6D 85.938 192 24 3 4978 5167 293318118 293318308 1.010000e-47 202.0
45 TraesCS7A01G516100 chr6D 85.849 106 15 0 3404 3509 337837899 337837794 4.890000e-21 113.0
46 TraesCS7A01G516100 chr6D 100.000 28 0 0 5723 5750 193490920 193490893 1.100000e-02 52.8
47 TraesCS7A01G516100 chr1D 86.225 755 86 9 1 740 472421976 472422727 0.000000e+00 802.0
48 TraesCS7A01G516100 chr1D 86.207 116 11 4 3406 3520 455790107 455789996 2.920000e-23 121.0
49 TraesCS7A01G516100 chr1D 100.000 28 0 0 5723 5750 36612276 36612303 1.100000e-02 52.8
50 TraesCS7A01G516100 chr5B 93.798 129 8 0 3183 3311 617821211 617821339 1.700000e-45 195.0
51 TraesCS7A01G516100 chr5B 84.713 157 21 2 794 947 447268027 447267871 2.880000e-33 154.0
52 TraesCS7A01G516100 chr5B 89.344 122 12 1 789 910 19589069 19588949 1.040000e-32 152.0
53 TraesCS7A01G516100 chr5B 88.000 100 12 0 3407 3506 655703178 655703277 1.050000e-22 119.0
54 TraesCS7A01G516100 chr5B 85.455 110 10 4 3406 3509 316716865 316716756 6.320000e-20 110.0
55 TraesCS7A01G516100 chr5D 93.023 129 9 0 3183 3311 498490181 498490309 7.890000e-44 189.0
56 TraesCS7A01G516100 chr5D 89.091 110 6 1 3406 3509 278634185 278634076 1.350000e-26 132.0
57 TraesCS7A01G516100 chr5A 90.840 131 10 2 3182 3311 524028385 524028514 2.210000e-39 174.0
58 TraesCS7A01G516100 chr5A 90.152 132 13 0 3182 3313 571787545 571787676 7.950000e-39 172.0
59 TraesCS7A01G516100 chr5A 83.249 197 18 9 4978 5172 13078708 13078525 3.700000e-37 167.0
60 TraesCS7A01G516100 chr5A 88.073 109 5 2 3406 3506 369628306 369628414 8.120000e-24 122.0
61 TraesCS7A01G516100 chr2B 90.769 130 12 0 3185 3314 458623620 458623491 2.210000e-39 174.0
62 TraesCS7A01G516100 chr2B 90.110 91 7 1 5187 5277 685738460 685738372 3.780000e-22 117.0
63 TraesCS7A01G516100 chr2B 89.130 46 1 4 5707 5750 104283005 104283048 3.000000e-03 54.7
64 TraesCS7A01G516100 chrUn 83.249 197 18 9 4978 5172 235343677 235343860 3.700000e-37 167.0
65 TraesCS7A01G516100 chrUn 83.249 197 18 9 4978 5172 239893984 239893801 3.700000e-37 167.0
66 TraesCS7A01G516100 chr4B 81.395 215 29 6 749 952 570739178 570739392 1.330000e-36 165.0
67 TraesCS7A01G516100 chr3A 82.741 197 19 9 4978 5172 574292973 574293156 1.720000e-35 161.0
68 TraesCS7A01G516100 chr3A 89.062 128 13 1 822 948 746320151 746320024 2.230000e-34 158.0
69 TraesCS7A01G516100 chr4D 84.545 110 12 4 3412 3520 435639780 435639675 2.940000e-18 104.0
70 TraesCS7A01G516100 chr4D 100.000 28 0 0 5723 5750 122586143 122586116 1.100000e-02 52.8
71 TraesCS7A01G516100 chr3D 96.970 33 0 1 5723 5754 119734428 119734460 3.000000e-03 54.7
72 TraesCS7A01G516100 chr2D 94.444 36 1 1 5715 5750 539170013 539169979 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G516100 chr7A 701306456 701312422 5966 True 11020.000000 11020 100.000000 1 5967 1 chr7A.!!$R5 5966
1 TraesCS7A01G516100 chr7A 701312588 701313334 746 False 856.000000 856 87.750000 8 739 1 chr7A.!!$F1 731
2 TraesCS7A01G516100 chr7B 700418538 700424493 5955 True 1053.716667 3269 92.781000 1 5674 6 chr7B.!!$R2 5673
3 TraesCS7A01G516100 chr7B 700424582 700425337 755 False 797.000000 797 86.184000 8 744 1 chr7B.!!$F2 736
4 TraesCS7A01G516100 chr7D 611259244 611265170 5926 True 1129.666667 2953 90.264000 1 5967 6 chr7D.!!$R1 5966
5 TraesCS7A01G516100 chr7D 611265260 611266018 758 False 883.000000 883 88.204000 8 745 1 chr7D.!!$F1 737
6 TraesCS7A01G516100 chr6A 427449594 427453184 3590 True 585.333333 1074 85.971000 995 5167 6 chr6A.!!$R2 4172
7 TraesCS7A01G516100 chr6B 457872817 457876659 3842 False 517.428571 1033 88.197714 995 5167 7 chr6B.!!$F3 4172
8 TraesCS7A01G516100 chr6D 293314879 293318308 3429 False 600.600000 989 87.295000 995 5167 5 chr6D.!!$F1 4172
9 TraesCS7A01G516100 chr1D 472421976 472422727 751 False 802.000000 802 86.225000 1 740 1 chr1D.!!$F2 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 1341 0.106708 AGGCCTGCACATGTATACGG 59.893 55.000 3.11 0.0 0.00 4.02 F
1493 2037 0.109342 ACCCTCAGTGGTTTGCTCAG 59.891 55.000 0.00 0.0 33.91 3.35 F
3308 4006 1.074566 AGCTTTTTGGGACAGAGGGAG 59.925 52.381 0.00 0.0 42.39 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2465 0.040958 GACACAGTTTGCAGCGGAAG 60.041 55.0 0.0 0.0 0.00 3.46 R
3403 4154 0.178964 CCCAAAAGAACTGGCCCTCA 60.179 55.0 0.0 0.0 32.10 3.86 R
5082 6335 0.107654 AAGATTACAGCGGACCTGGC 60.108 55.0 0.0 0.0 46.14 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 85 5.558818 AGCTGAAATTGAGTTGAGATCACT 58.441 37.500 0.00 0.00 0.00 3.41
109 116 5.738118 AGTGTTGTAGAGATCGCTACTAC 57.262 43.478 29.91 29.91 43.03 2.73
156 165 8.561738 AAAGCCAATTATAGACGGTAATATGG 57.438 34.615 0.00 0.00 0.00 2.74
196 207 6.404708 TCATTGCATTTAAGCCTTGCATAAA 58.595 32.000 0.00 0.00 45.04 1.40
244 263 6.312426 CCATATAGACTCGGCTCATTTGAATC 59.688 42.308 0.00 0.00 0.00 2.52
282 301 0.584396 TCGCTGCGGTTACAACTTTG 59.416 50.000 23.03 0.00 0.00 2.77
296 315 7.973944 GGTTACAACTTTGGATGGACATAATTC 59.026 37.037 0.00 0.00 0.00 2.17
432 456 2.238521 TGCTTGCAAGGGGTTAGAAAG 58.761 47.619 27.10 0.00 0.00 2.62
436 461 3.806949 TGCAAGGGGTTAGAAAGATGT 57.193 42.857 0.00 0.00 0.00 3.06
455 480 6.981722 AGATGTAGTGAACAATGTTTTTCCC 58.018 36.000 0.00 0.00 42.70 3.97
540 568 1.408969 AAACTTTTCCCGCATGTGGT 58.591 45.000 23.44 1.00 0.00 4.16
619 648 0.908198 AAGAGCCTAAGGTGCAGGAG 59.092 55.000 0.00 0.00 34.91 3.69
656 685 5.329035 ACCACAATTTGTTATGGATGAGC 57.671 39.130 10.56 0.00 36.04 4.26
721 755 7.765695 TCTATTCTTCTTGCCATTTGTTCTT 57.234 32.000 0.00 0.00 0.00 2.52
747 1283 6.697641 TGTCCACTCTCTTATTTTAGGGTT 57.302 37.500 0.00 0.00 0.00 4.11
758 1294 0.988832 TTTAGGGTTGAGGCGTGGAT 59.011 50.000 0.00 0.00 0.00 3.41
776 1312 3.444034 TGGATCGATGTAGGTAGCTATGC 59.556 47.826 0.54 0.00 0.00 3.14
777 1313 3.697045 GGATCGATGTAGGTAGCTATGCT 59.303 47.826 0.54 0.00 43.41 3.79
782 1319 4.667262 GATGTAGGTAGCTATGCTGATCG 58.333 47.826 4.71 0.00 40.10 3.69
789 1326 1.670406 CTATGCTGATCGCCAGGCC 60.670 63.158 5.63 0.00 43.13 5.19
795 1332 4.783621 GATCGCCAGGCCTGCACA 62.784 66.667 28.39 12.66 0.00 4.57
804 1341 0.106708 AGGCCTGCACATGTATACGG 59.893 55.000 3.11 0.00 0.00 4.02
807 1344 0.179059 CCTGCACATGTATACGGCCA 60.179 55.000 2.24 0.00 0.00 5.36
844 1381 8.512966 AATCTTCTTTTTCCCTAGCACTAATC 57.487 34.615 0.00 0.00 0.00 1.75
877 1414 7.390440 CACAATCTAGTCCCTTGTCATGTTTTA 59.610 37.037 0.00 0.00 30.99 1.52
940 1477 9.755064 CCAACGAACTTAATAACAATTAGTGAG 57.245 33.333 0.00 0.00 0.00 3.51
953 1491 7.317722 ACAATTAGTGAGTTCCTCCTAAACT 57.682 36.000 0.00 0.00 39.61 2.66
1146 1688 1.706995 TACGCCTCGGATCCCTCTCT 61.707 60.000 6.06 0.00 0.00 3.10
1153 1695 2.621055 CTCGGATCCCTCTCTGTAACAG 59.379 54.545 6.06 0.00 0.00 3.16
1228 1771 2.237392 GCTGTCATTCTACAGGGAAGGT 59.763 50.000 6.17 0.00 45.75 3.50
1270 1813 3.706373 ACGGCGACCAATCAGGCT 61.706 61.111 16.62 0.00 43.14 4.58
1279 1822 1.126488 CCAATCAGGCTGAGGAGCTA 58.874 55.000 23.24 0.00 45.44 3.32
1345 1888 3.142028 ACCCTCCTTTGGAATTTTGGAGA 59.858 43.478 8.70 0.00 45.07 3.71
1474 2018 8.740123 TGTTAGGTTTGAATCTGAACTAAACA 57.260 30.769 12.68 11.85 33.99 2.83
1493 2037 0.109342 ACCCTCAGTGGTTTGCTCAG 59.891 55.000 0.00 0.00 33.91 3.35
1494 2038 0.109342 CCCTCAGTGGTTTGCTCAGT 59.891 55.000 0.00 0.00 0.00 3.41
1495 2039 1.347707 CCCTCAGTGGTTTGCTCAGTA 59.652 52.381 0.00 0.00 0.00 2.74
1496 2040 2.417719 CCTCAGTGGTTTGCTCAGTAC 58.582 52.381 0.00 0.00 0.00 2.73
1497 2041 2.037772 CCTCAGTGGTTTGCTCAGTACT 59.962 50.000 0.00 0.00 0.00 2.73
1498 2042 3.062763 CTCAGTGGTTTGCTCAGTACTG 58.937 50.000 17.17 17.17 37.47 2.74
1514 2058 7.154435 TCAGTACTGTGTTAGAATACTGACC 57.846 40.000 21.99 0.00 44.15 4.02
1516 2060 5.709164 AGTACTGTGTTAGAATACTGACCGT 59.291 40.000 0.00 0.00 32.66 4.83
1561 2105 5.813672 GTGTGTAGTTTTCCTAGTCAACACA 59.186 40.000 0.00 0.00 32.49 3.72
1583 2127 2.928036 TGTTCCTCCTCTCCTGATCA 57.072 50.000 0.00 0.00 0.00 2.92
1584 2128 3.190383 TGTTCCTCCTCTCCTGATCAA 57.810 47.619 0.00 0.00 0.00 2.57
1586 2130 3.103742 GTTCCTCCTCTCCTGATCAAGT 58.896 50.000 0.00 0.00 0.00 3.16
1587 2131 2.744760 TCCTCCTCTCCTGATCAAGTG 58.255 52.381 0.00 0.00 0.00 3.16
1589 2133 2.168106 CCTCCTCTCCTGATCAAGTGTG 59.832 54.545 0.00 0.00 0.00 3.82
1590 2134 2.830923 CTCCTCTCCTGATCAAGTGTGT 59.169 50.000 0.00 0.00 0.00 3.72
1591 2135 3.242867 TCCTCTCCTGATCAAGTGTGTT 58.757 45.455 0.00 0.00 0.00 3.32
1593 2137 3.007290 CCTCTCCTGATCAAGTGTGTTCA 59.993 47.826 0.00 0.00 33.42 3.18
1638 2193 8.715842 TGTAACCTGTATAAATATGCCCAAGTA 58.284 33.333 0.00 0.00 0.00 2.24
1658 2213 9.088512 CCAAGTACTAATAGATCAAGTGTGTTC 57.911 37.037 0.00 0.00 0.00 3.18
1664 2219 7.918033 ACTAATAGATCAAGTGTGTTCGATCTG 59.082 37.037 10.27 0.00 43.36 2.90
1708 2263 6.205464 TCAAGATGAGTTTGCTTTCCTTGTAG 59.795 38.462 0.00 0.00 0.00 2.74
1738 2293 7.441157 CACAGTGGAGAAAACTAAACTGTATCA 59.559 37.037 5.99 0.00 44.69 2.15
1754 2309 8.657387 AACTGTATCAGCCATGTATAGATAGT 57.343 34.615 0.00 0.00 34.37 2.12
1842 2400 5.907207 AGTAGATGCGTCTTTCATGTGTAT 58.093 37.500 14.93 0.00 35.87 2.29
1859 2417 8.699130 TCATGTGTATGGGATATAGCTCTTATG 58.301 37.037 0.00 0.00 34.97 1.90
1895 2454 4.943705 GTGATCCCTTTCTGTAGCAAATGA 59.056 41.667 0.00 0.00 0.00 2.57
1937 2496 4.095782 GCAAACTGTGTCTTGGTACTTCAA 59.904 41.667 0.00 0.00 0.00 2.69
1962 2521 6.899089 TGTGCCAGGAATGAGATATTCTTTA 58.101 36.000 0.00 0.00 0.00 1.85
2026 2585 6.791303 TGTAAAATGATTACCGAATGGAAGC 58.209 36.000 0.00 0.00 39.21 3.86
2037 2596 3.365364 CCGAATGGAAGCTTGAAACAGTC 60.365 47.826 2.10 5.61 37.49 3.51
2047 2606 4.883585 AGCTTGAAACAGTCAGAACAATCA 59.116 37.500 0.00 0.00 37.61 2.57
2068 2627 9.236691 CAATCATCATAATAACTTTTGGTTCGG 57.763 33.333 0.00 0.00 39.17 4.30
2172 2737 2.496899 TGCCATTGAGTTCCCTCTTC 57.503 50.000 0.00 0.00 38.61 2.87
2176 2743 3.432890 GCCATTGAGTTCCCTCTTCCTAG 60.433 52.174 0.00 0.00 38.61 3.02
2237 2809 5.596836 TTGTCAAAACTTCTGCTGGAAAT 57.403 34.783 0.00 0.00 33.07 2.17
2327 2900 7.530010 ACGGATGTATTGAACAAAAGAATGAG 58.470 34.615 0.00 0.00 42.70 2.90
2482 3068 5.126869 ACAACACTTTGATCCACACAATTCA 59.873 36.000 0.00 0.00 36.48 2.57
2485 3071 5.302568 ACACTTTGATCCACACAATTCACAT 59.697 36.000 0.00 0.00 0.00 3.21
2562 3148 4.157840 GGGGTTCATAATGTGGAAACTGAC 59.842 45.833 0.00 0.00 31.45 3.51
2653 3253 9.334693 CTTTCAAGATAAAAGTTATGCACAGTC 57.665 33.333 0.00 0.00 0.00 3.51
2676 3276 6.091441 GTCAATACCAGTCAAGCTTGAACTAG 59.909 42.308 29.99 21.81 39.21 2.57
2691 3291 8.507249 AGCTTGAACTAGTTTGTAAGCTAATTG 58.493 33.333 32.09 11.89 46.22 2.32
2708 3308 6.944862 AGCTAATTGGAGAATTTGAGTTCTGT 59.055 34.615 0.00 0.00 38.51 3.41
2838 3438 7.951530 ATTCAATTGCAGTTTTTCTAAGTGG 57.048 32.000 0.00 0.00 0.00 4.00
2849 3449 4.584638 TTTCTAAGTGGCCATGGTGTAT 57.415 40.909 9.72 0.00 0.00 2.29
2929 3529 5.246981 TCTCAGGGCAAAATATATCTGGG 57.753 43.478 0.00 0.00 0.00 4.45
2987 3587 7.376866 CCGACTAATGCACATCATTAATTTGTC 59.623 37.037 0.00 0.00 44.49 3.18
3012 3612 6.145048 CGGTCGTTGTATTGAAATAGGATACC 59.855 42.308 0.00 0.00 37.17 2.73
3072 3675 6.857437 TCTGTTTTCTATCCATCTCTGTCA 57.143 37.500 0.00 0.00 0.00 3.58
3113 3716 4.299586 TCAATGCCAGATGTCCTAACAA 57.700 40.909 0.00 0.00 39.30 2.83
3196 3894 8.713737 AACAGAAGTTTAATATTACCTCCGTC 57.286 34.615 0.00 0.00 33.11 4.79
3197 3895 7.270779 ACAGAAGTTTAATATTACCTCCGTCC 58.729 38.462 0.00 0.00 0.00 4.79
3198 3896 6.704937 CAGAAGTTTAATATTACCTCCGTCCC 59.295 42.308 0.00 0.00 0.00 4.46
3199 3897 6.384886 AGAAGTTTAATATTACCTCCGTCCCA 59.615 38.462 0.00 0.00 0.00 4.37
3200 3898 6.564557 AGTTTAATATTACCTCCGTCCCAA 57.435 37.500 0.00 0.00 0.00 4.12
3201 3899 6.961042 AGTTTAATATTACCTCCGTCCCAAA 58.039 36.000 0.00 0.00 0.00 3.28
3202 3900 7.580007 AGTTTAATATTACCTCCGTCCCAAAT 58.420 34.615 0.00 0.00 0.00 2.32
3203 3901 8.716779 AGTTTAATATTACCTCCGTCCCAAATA 58.283 33.333 0.00 0.00 0.00 1.40
3204 3902 9.341078 GTTTAATATTACCTCCGTCCCAAATAA 57.659 33.333 0.00 0.00 0.00 1.40
3205 3903 8.907222 TTAATATTACCTCCGTCCCAAATAAC 57.093 34.615 0.00 0.00 0.00 1.89
3206 3904 6.758806 ATATTACCTCCGTCCCAAATAACT 57.241 37.500 0.00 0.00 0.00 2.24
3207 3905 4.914177 TTACCTCCGTCCCAAATAACTT 57.086 40.909 0.00 0.00 0.00 2.66
3208 3906 3.067684 ACCTCCGTCCCAAATAACTTG 57.932 47.619 0.00 0.00 34.52 3.16
3209 3907 2.374170 ACCTCCGTCCCAAATAACTTGT 59.626 45.455 0.00 0.00 32.65 3.16
3210 3908 3.007635 CCTCCGTCCCAAATAACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
3211 3909 3.307480 CCTCCGTCCCAAATAACTTGTCT 60.307 47.826 0.00 0.00 32.65 3.41
3212 3910 4.324267 CTCCGTCCCAAATAACTTGTCTT 58.676 43.478 0.00 0.00 32.65 3.01
3213 3911 5.484715 CTCCGTCCCAAATAACTTGTCTTA 58.515 41.667 0.00 0.00 32.65 2.10
3214 3912 5.484715 TCCGTCCCAAATAACTTGTCTTAG 58.515 41.667 0.00 0.00 32.65 2.18
3215 3913 5.246656 TCCGTCCCAAATAACTTGTCTTAGA 59.753 40.000 0.00 0.00 32.65 2.10
3216 3914 6.070424 TCCGTCCCAAATAACTTGTCTTAGAT 60.070 38.462 0.00 0.00 32.65 1.98
3217 3915 6.598064 CCGTCCCAAATAACTTGTCTTAGATT 59.402 38.462 0.00 0.00 32.65 2.40
3218 3916 7.120726 CCGTCCCAAATAACTTGTCTTAGATTT 59.879 37.037 0.00 0.00 32.65 2.17
3219 3917 9.158233 CGTCCCAAATAACTTGTCTTAGATTTA 57.842 33.333 0.00 0.00 32.65 1.40
3244 3942 8.815565 ATCTAGATATGGATGTATCGAACACT 57.184 34.615 2.53 0.00 42.09 3.55
3245 3943 9.907229 ATCTAGATATGGATGTATCGAACACTA 57.093 33.333 2.53 0.00 42.09 2.74
3246 3944 9.734984 TCTAGATATGGATGTATCGAACACTAA 57.265 33.333 0.00 0.00 42.09 2.24
3249 3947 9.477484 AGATATGGATGTATCGAACACTAAAAC 57.523 33.333 0.00 0.00 42.09 2.43
3250 3948 6.583912 ATGGATGTATCGAACACTAAAACG 57.416 37.500 0.00 0.00 42.09 3.60
3251 3949 5.472148 TGGATGTATCGAACACTAAAACGT 58.528 37.500 0.00 0.00 42.09 3.99
3252 3950 5.346551 TGGATGTATCGAACACTAAAACGTG 59.653 40.000 0.00 0.00 42.09 4.49
3254 3952 5.811018 TGTATCGAACACTAAAACGTGTC 57.189 39.130 0.00 0.00 46.71 3.67
3255 3953 5.522456 TGTATCGAACACTAAAACGTGTCT 58.478 37.500 0.00 0.00 46.71 3.41
3256 3954 6.667370 TGTATCGAACACTAAAACGTGTCTA 58.333 36.000 0.00 0.00 46.71 2.59
3257 3955 6.798476 TGTATCGAACACTAAAACGTGTCTAG 59.202 38.462 0.00 0.00 46.71 2.43
3258 3956 5.422666 TCGAACACTAAAACGTGTCTAGA 57.577 39.130 0.00 0.00 46.71 2.43
3259 3957 6.005583 TCGAACACTAAAACGTGTCTAGAT 57.994 37.500 0.00 0.00 46.71 1.98
3260 3958 7.132694 TCGAACACTAAAACGTGTCTAGATA 57.867 36.000 0.00 0.00 46.71 1.98
3261 3959 7.017645 TCGAACACTAAAACGTGTCTAGATAC 58.982 38.462 9.46 9.46 46.71 2.24
3262 3960 6.798476 CGAACACTAAAACGTGTCTAGATACA 59.202 38.462 18.39 0.27 46.71 2.29
3263 3961 7.484007 CGAACACTAAAACGTGTCTAGATACAT 59.516 37.037 18.39 1.14 46.71 2.29
3264 3962 8.684973 AACACTAAAACGTGTCTAGATACATC 57.315 34.615 18.39 0.00 46.71 3.06
3265 3963 8.053026 ACACTAAAACGTGTCTAGATACATCT 57.947 34.615 18.39 3.73 44.32 2.90
3266 3964 7.968956 ACACTAAAACGTGTCTAGATACATCTG 59.031 37.037 18.39 5.72 44.32 2.90
3267 3965 7.968956 CACTAAAACGTGTCTAGATACATCTGT 59.031 37.037 18.39 6.30 37.76 3.41
3268 3966 9.170734 ACTAAAACGTGTCTAGATACATCTGTA 57.829 33.333 18.39 4.32 37.76 2.74
3290 3988 9.243637 CTGTATCTAGACAAATCTAAGACAAGC 57.756 37.037 0.00 0.00 36.98 4.01
3291 3989 8.972127 TGTATCTAGACAAATCTAAGACAAGCT 58.028 33.333 0.00 0.00 36.98 3.74
3292 3990 9.810545 GTATCTAGACAAATCTAAGACAAGCTT 57.189 33.333 0.00 0.00 36.98 3.74
3294 3992 9.732130 ATCTAGACAAATCTAAGACAAGCTTTT 57.268 29.630 0.00 0.00 36.98 2.27
3295 3993 9.561069 TCTAGACAAATCTAAGACAAGCTTTTT 57.439 29.630 0.00 0.00 36.98 1.94
3296 3994 9.604626 CTAGACAAATCTAAGACAAGCTTTTTG 57.395 33.333 12.25 12.25 36.98 2.44
3297 3995 7.428826 AGACAAATCTAAGACAAGCTTTTTGG 58.571 34.615 16.28 6.55 36.69 3.28
3298 3996 6.515832 ACAAATCTAAGACAAGCTTTTTGGG 58.484 36.000 16.28 0.97 36.69 4.12
3299 3997 6.323739 ACAAATCTAAGACAAGCTTTTTGGGA 59.676 34.615 16.28 4.71 36.69 4.37
3300 3998 5.966742 ATCTAAGACAAGCTTTTTGGGAC 57.033 39.130 0.00 0.00 38.05 4.46
3301 3999 4.787551 TCTAAGACAAGCTTTTTGGGACA 58.212 39.130 0.00 0.00 38.05 4.02
3302 4000 4.821805 TCTAAGACAAGCTTTTTGGGACAG 59.178 41.667 0.00 0.00 37.63 3.51
3303 4001 3.297134 AGACAAGCTTTTTGGGACAGA 57.703 42.857 0.00 0.00 42.39 3.41
3304 4002 3.217626 AGACAAGCTTTTTGGGACAGAG 58.782 45.455 0.00 0.00 42.39 3.35
3305 4003 2.294512 GACAAGCTTTTTGGGACAGAGG 59.705 50.000 0.00 0.00 42.39 3.69
3306 4004 1.615392 CAAGCTTTTTGGGACAGAGGG 59.385 52.381 0.00 0.00 42.39 4.30
3307 4005 1.149101 AGCTTTTTGGGACAGAGGGA 58.851 50.000 0.00 0.00 42.39 4.20
3308 4006 1.074566 AGCTTTTTGGGACAGAGGGAG 59.925 52.381 0.00 0.00 42.39 4.30
3309 4007 1.202940 GCTTTTTGGGACAGAGGGAGT 60.203 52.381 0.00 0.00 42.39 3.85
3310 4008 2.039879 GCTTTTTGGGACAGAGGGAGTA 59.960 50.000 0.00 0.00 42.39 2.59
3324 4022 7.183460 ACAGAGGGAGTATTAACTAAGTGACT 58.817 38.462 0.00 0.00 35.56 3.41
3451 4202 1.133790 CTGGCTGTGGAAATAAGCTGC 59.866 52.381 0.00 0.00 37.12 5.25
3571 4430 9.872757 CAATAAATCATACGTTTACGGCTTTAT 57.127 29.630 7.24 5.87 44.95 1.40
3572 4431 9.872757 AATAAATCATACGTTTACGGCTTTATG 57.127 29.630 7.24 5.90 44.95 1.90
3701 4567 6.932356 TCATCAGGATAATTCTTCTGCAAC 57.068 37.500 0.00 0.00 0.00 4.17
3892 4761 9.150348 GGAATCTGAAGAACTTAGAAGAGAAAG 57.850 37.037 0.00 0.00 0.00 2.62
3923 4792 4.402829 TGGAAAGGCAAGCTACATACAAA 58.597 39.130 0.00 0.00 0.00 2.83
3981 4850 9.554395 TGAAGTTGTATGAAGACAAATCTGTTA 57.446 29.630 0.00 0.00 40.88 2.41
4084 4953 5.048013 ACAATTAGCTGTAAACTTCCAAGGC 60.048 40.000 0.00 0.00 0.00 4.35
4088 4957 3.084786 GCTGTAAACTTCCAAGGCTCAT 58.915 45.455 0.00 0.00 0.00 2.90
4103 4972 1.135460 GCTCATCAGCTTTGTTCTGCC 60.135 52.381 0.00 0.00 43.09 4.85
4116 4985 2.037902 TGTTCTGCCTGTCCGAATTACA 59.962 45.455 0.00 0.00 0.00 2.41
4123 4992 3.821841 CCTGTCCGAATTACACTTTTGC 58.178 45.455 0.00 0.00 0.00 3.68
4148 5017 6.468543 TGCTCACCAATGTTGTATTAGTACA 58.531 36.000 0.00 0.00 39.00 2.90
4157 5026 8.999431 CAATGTTGTATTAGTACACTCAGGTTT 58.001 33.333 0.00 0.00 40.40 3.27
4163 5032 9.918630 TGTATTAGTACACTCAGGTTTTAGTTC 57.081 33.333 0.00 0.00 35.94 3.01
4173 5042 7.227512 CACTCAGGTTTTAGTTCTGACTTCAAT 59.772 37.037 0.00 0.00 37.33 2.57
4215 5085 6.144563 GCTTTGGTTTATTCTGCTTTCTGAAC 59.855 38.462 0.00 0.00 33.84 3.18
4227 5097 4.098349 TGCTTTCTGAACATCACAAGCTTT 59.902 37.500 15.39 0.00 37.96 3.51
4297 5172 7.914537 AATCAGAATTTTCACTTCGTTGAAC 57.085 32.000 0.00 0.00 35.18 3.18
4367 5316 3.370978 GTGTGAAACGACACCAGATATGG 59.629 47.826 4.39 4.39 42.39 2.74
4375 5487 4.933400 ACGACACCAGATATGGTTTGTTAC 59.067 41.667 9.93 0.00 40.85 2.50
4395 5518 1.676014 CCACCTTAAGCCCTGAAGTCG 60.676 57.143 0.00 0.00 0.00 4.18
4418 5542 4.826274 TGTTCTTCCCTATCTCCTTGTG 57.174 45.455 0.00 0.00 0.00 3.33
4419 5543 4.168101 TGTTCTTCCCTATCTCCTTGTGT 58.832 43.478 0.00 0.00 0.00 3.72
4422 5546 4.425772 TCTTCCCTATCTCCTTGTGTGAA 58.574 43.478 0.00 0.00 0.00 3.18
4423 5547 4.844085 TCTTCCCTATCTCCTTGTGTGAAA 59.156 41.667 0.00 0.00 0.00 2.69
4424 5548 4.553330 TCCCTATCTCCTTGTGTGAAAC 57.447 45.455 0.00 0.00 37.35 2.78
4425 5549 3.056107 TCCCTATCTCCTTGTGTGAAACG 60.056 47.826 0.00 0.00 42.39 3.60
4426 5550 3.056107 CCCTATCTCCTTGTGTGAAACGA 60.056 47.826 0.00 0.00 42.39 3.85
4431 5555 2.480419 CTCCTTGTGTGAAACGACATCC 59.520 50.000 0.00 0.00 42.39 3.51
4434 5558 1.225855 TGTGTGAAACGACATCCAGC 58.774 50.000 0.00 0.00 42.39 4.85
4444 5568 6.096423 TGAAACGACATCCAGCTACTAACTAT 59.904 38.462 0.00 0.00 0.00 2.12
4447 5571 7.762588 ACGACATCCAGCTACTAACTATTAT 57.237 36.000 0.00 0.00 0.00 1.28
4506 5631 7.041916 GCCATGAGTCATTGATTTTTGAACAAA 60.042 33.333 8.35 0.00 0.00 2.83
4511 5636 9.693157 GAGTCATTGATTTTTGAACAAAAGTTG 57.307 29.630 11.55 6.23 40.83 3.16
4582 5707 5.412904 GTGTTAGCTTTAGCAATCAGAAGGT 59.587 40.000 4.33 0.00 45.16 3.50
4583 5708 6.003950 TGTTAGCTTTAGCAATCAGAAGGTT 58.996 36.000 4.33 0.00 45.16 3.50
4625 5752 5.351458 ACTTTCAGTTTTTGTCTGGCAATC 58.649 37.500 0.00 0.00 36.89 2.67
4626 5753 4.320608 TTCAGTTTTTGTCTGGCAATCC 57.679 40.909 0.00 0.00 36.89 3.01
4645 5772 6.127507 GCAATCCTCTATCCTTTTTGCTTCTT 60.128 38.462 0.00 0.00 36.10 2.52
4647 5774 5.880901 TCCTCTATCCTTTTTGCTTCTTGT 58.119 37.500 0.00 0.00 0.00 3.16
4661 5788 9.906660 TTTTGCTTCTTGTATAAATACAACTGG 57.093 29.630 10.73 3.64 45.41 4.00
4665 5792 8.604890 GCTTCTTGTATAAATACAACTGGACTC 58.395 37.037 10.73 0.94 45.41 3.36
4737 5864 8.630054 TTTAAATTTGGTGTAGATAGTGCTGT 57.370 30.769 0.00 0.00 0.00 4.40
4740 5867 8.807948 AAATTTGGTGTAGATAGTGCTGTTAT 57.192 30.769 0.00 0.00 0.00 1.89
4758 5886 9.205719 TGCTGTTATCTACTATACGAGAAGTAG 57.794 37.037 13.17 13.17 44.31 2.57
4759 5887 8.170553 GCTGTTATCTACTATACGAGAAGTAGC 58.829 40.741 14.03 0.00 43.18 3.58
4803 5936 5.130975 TGGTTCAGAATGTATGCCTACTCAT 59.869 40.000 0.74 0.00 37.40 2.90
4804 5937 5.698545 GGTTCAGAATGTATGCCTACTCATC 59.301 44.000 0.74 0.00 37.40 2.92
4805 5938 6.283694 GTTCAGAATGTATGCCTACTCATCA 58.716 40.000 0.74 0.00 37.40 3.07
4812 5945 2.654749 TGCCTACTCATCAACTGTCG 57.345 50.000 0.00 0.00 0.00 4.35
4824 5957 0.532862 AACTGTCGTGAACCTGCAGG 60.533 55.000 31.60 31.60 42.17 4.85
4872 6005 5.183713 TGCACCAGAAAATGAAGGTTATGAG 59.816 40.000 0.00 0.00 30.44 2.90
4975 6116 0.196631 TGGGTAGGTAAGGGTGGGTT 59.803 55.000 0.00 0.00 0.00 4.11
4976 6117 0.914644 GGGTAGGTAAGGGTGGGTTC 59.085 60.000 0.00 0.00 0.00 3.62
5070 6322 2.433970 TGCAATATGAGGATGTCGACCA 59.566 45.455 14.12 3.25 0.00 4.02
5075 6328 0.039764 TGAGGATGTCGACCACTCCT 59.960 55.000 23.73 23.73 40.82 3.69
5078 6331 0.741221 GGATGTCGACCACTCCTTGC 60.741 60.000 14.12 0.00 0.00 4.01
5082 6335 0.946221 GTCGACCACTCCTTGCACTG 60.946 60.000 3.51 0.00 0.00 3.66
5086 6339 1.970114 CCACTCCTTGCACTGCCAG 60.970 63.158 0.00 0.00 0.00 4.85
5100 6353 1.264749 TGCCAGGTCCGCTGTAATCT 61.265 55.000 0.00 0.00 0.00 2.40
5275 6530 4.067944 AGAGCATATACTAAGGGAGGGG 57.932 50.000 0.00 0.00 0.00 4.79
5299 6554 4.022068 CCCCGGCGTATTCTAACTTGTATA 60.022 45.833 6.01 0.00 0.00 1.47
5302 6557 6.309737 CCCGGCGTATTCTAACTTGTATAATC 59.690 42.308 6.01 0.00 0.00 1.75
5356 6611 0.034059 AGGAGTTGAGCACACGAAGG 59.966 55.000 0.00 0.00 0.00 3.46
5360 6615 1.153066 TTGAGCACACGAAGGCCAA 60.153 52.632 5.01 0.00 0.00 4.52
5361 6616 1.165907 TTGAGCACACGAAGGCCAAG 61.166 55.000 5.01 0.00 0.00 3.61
5362 6617 2.970974 GAGCACACGAAGGCCAAGC 61.971 63.158 5.01 0.00 0.00 4.01
5363 6618 2.980233 GCACACGAAGGCCAAGCT 60.980 61.111 5.01 0.00 0.00 3.74
5364 6619 2.555547 GCACACGAAGGCCAAGCTT 61.556 57.895 5.01 0.00 0.00 3.74
5365 6620 1.283793 CACACGAAGGCCAAGCTTG 59.716 57.895 19.93 19.93 0.00 4.01
5366 6621 2.256461 CACGAAGGCCAAGCTTGC 59.744 61.111 21.43 15.56 0.00 4.01
5367 6622 3.357079 ACGAAGGCCAAGCTTGCG 61.357 61.111 21.43 19.46 0.00 4.85
5368 6623 3.357079 CGAAGGCCAAGCTTGCGT 61.357 61.111 21.43 14.41 0.00 5.24
5369 6624 2.563427 GAAGGCCAAGCTTGCGTC 59.437 61.111 21.43 15.25 0.00 5.19
5370 6625 2.982744 GAAGGCCAAGCTTGCGTCC 61.983 63.158 21.43 19.16 0.00 4.79
5391 6646 3.136763 CAGCTCTTTCTTCAGCAACAGA 58.863 45.455 0.00 0.00 38.18 3.41
5397 6652 0.106708 TCTTCAGCAACAGACCGCTT 59.893 50.000 0.00 0.00 35.96 4.68
5424 6679 7.989947 TCCTCTATAACTTCAACTGGGTAAT 57.010 36.000 0.00 0.00 0.00 1.89
5428 6683 8.612486 TCTATAACTTCAACTGGGTAATACCA 57.388 34.615 12.03 0.00 41.02 3.25
5438 6693 1.681264 GGGTAATACCATGGTGCTTGC 59.319 52.381 28.17 21.21 41.02 4.01
5446 6701 1.303236 ATGGTGCTTGCGCTTACCA 60.303 52.632 21.37 21.37 43.69 3.25
5460 6715 3.740141 CGCTTACCATCGACAATACCCTT 60.740 47.826 0.00 0.00 0.00 3.95
5542 6797 8.308931 CACTATAGGGTTACTAACACTGTTGAA 58.691 37.037 13.20 0.00 46.63 2.69
5559 6814 4.279671 TGTTGAACACAGACCTTTTGTTGT 59.720 37.500 0.00 0.00 33.59 3.32
5628 6885 0.581053 CAACCATTGTGGCGTTTTGC 59.419 50.000 0.00 0.00 42.67 3.68
5687 7071 4.122337 TCTTACTACTCCCTGTGTTCCA 57.878 45.455 0.00 0.00 0.00 3.53
5739 7125 3.069158 ACGTCATATTTAGGAACGGAGGG 59.931 47.826 0.00 0.00 0.00 4.30
5740 7126 3.319972 CGTCATATTTAGGAACGGAGGGA 59.680 47.826 0.00 0.00 0.00 4.20
5743 7129 5.537674 GTCATATTTAGGAACGGAGGGAGTA 59.462 44.000 0.00 0.00 0.00 2.59
5759 7145 7.573283 CGGAGGGAGTATCTTTTCTTTTTCAAC 60.573 40.741 0.00 0.00 33.73 3.18
5775 7161 6.392625 TTTTCAACGATACACCATGGAAAA 57.607 33.333 21.47 7.63 32.48 2.29
5805 7191 5.668471 TCAGTATCATTGAAGAAGAGCCAG 58.332 41.667 0.00 0.00 0.00 4.85
5847 7233 1.000717 GGCATACAACACACAACACCC 60.001 52.381 0.00 0.00 0.00 4.61
5853 7239 0.548989 AACACACAACACCCCAGCTA 59.451 50.000 0.00 0.00 0.00 3.32
5854 7240 0.179029 ACACACAACACCCCAGCTAC 60.179 55.000 0.00 0.00 0.00 3.58
5861 7247 0.036388 ACACCCCAGCTACAATGACG 60.036 55.000 0.00 0.00 0.00 4.35
5879 7265 1.338973 ACGAAACAACTCGCCTAGTCA 59.661 47.619 0.00 0.00 42.69 3.41
5886 7272 0.526662 ACTCGCCTAGTCAAACCTCG 59.473 55.000 0.00 0.00 30.33 4.63
5909 7295 1.688197 ACACAAAATGGCAAGGAGGTG 59.312 47.619 0.00 0.00 0.00 4.00
5932 7321 3.196469 AGACTCAAAGATCAAGGATCGCA 59.804 43.478 0.00 0.00 43.17 5.10
5948 7337 0.597568 CGCATCACAACCAACACCAT 59.402 50.000 0.00 0.00 0.00 3.55
5956 7345 1.032014 AACCAACACCATGACAGCAC 58.968 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 85 5.899120 AGCGATCTCTACAACACTTCTTA 57.101 39.130 0.00 0.00 0.00 2.10
156 165 6.163159 TGCAATGAACAACTTGTCAAAAAC 57.837 33.333 0.00 0.00 0.00 2.43
196 207 5.422012 GGTCTACACCCATTCAAAAATCCAT 59.578 40.000 0.00 0.00 36.54 3.41
244 263 2.568090 GTGCCCATTCCACTTGCG 59.432 61.111 0.00 0.00 0.00 4.85
282 301 6.867662 AGAAACATCGAATTATGTCCATCC 57.132 37.500 0.00 0.00 39.16 3.51
296 315 8.782533 AAAACTAAAAGCTACAAGAAACATCG 57.217 30.769 0.00 0.00 0.00 3.84
330 349 5.105351 CCAAGTCCAGTTTCCTTCTGTTTTT 60.105 40.000 0.00 0.00 0.00 1.94
331 350 4.402474 CCAAGTCCAGTTTCCTTCTGTTTT 59.598 41.667 0.00 0.00 0.00 2.43
432 456 6.744112 TGGGAAAAACATTGTTCACTACATC 58.256 36.000 1.83 0.00 36.44 3.06
436 461 5.988561 GCATTGGGAAAAACATTGTTCACTA 59.011 36.000 1.83 0.00 0.00 2.74
455 480 3.395639 ACATTCTGTTTGCTTGGCATTG 58.604 40.909 0.00 0.00 38.76 2.82
619 648 4.605640 TTGTGGTACTGTTGGTAGGTAC 57.394 45.455 0.00 0.00 36.18 3.34
626 655 6.015856 TCCATAACAAATTGTGGTACTGTTGG 60.016 38.462 0.00 0.00 45.11 3.77
656 685 7.370383 ACAATTGCCAACAGTAAGAAATGTAG 58.630 34.615 5.05 0.00 0.00 2.74
689 723 8.985315 AATGGCAAGAAGAATAGATTGTGATA 57.015 30.769 0.00 0.00 0.00 2.15
721 755 8.388656 ACCCTAAAATAAGAGAGTGGACAATA 57.611 34.615 0.00 0.00 0.00 1.90
747 1283 0.668535 CTACATCGATCCACGCCTCA 59.331 55.000 0.00 0.00 42.26 3.86
758 1294 3.751518 TCAGCATAGCTACCTACATCGA 58.248 45.455 0.00 0.00 36.40 3.59
776 1312 4.478371 TGCAGGCCTGGCGATCAG 62.478 66.667 33.46 6.48 43.00 2.90
777 1313 4.783621 GTGCAGGCCTGGCGATCA 62.784 66.667 33.46 19.57 0.00 2.92
782 1319 0.179020 TATACATGTGCAGGCCTGGC 60.179 55.000 33.46 24.58 0.00 4.85
789 1326 1.220529 CTGGCCGTATACATGTGCAG 58.779 55.000 9.11 0.05 0.00 4.41
792 1329 2.309528 ACACTGGCCGTATACATGTG 57.690 50.000 9.11 6.45 0.00 3.21
795 1332 4.161565 CCCATATACACTGGCCGTATACAT 59.838 45.833 10.18 0.00 35.27 2.29
804 1341 5.234466 AGAAGATTCCCATATACACTGGC 57.766 43.478 0.00 0.00 32.08 4.85
807 1344 8.753497 GGAAAAAGAAGATTCCCATATACACT 57.247 34.615 0.00 0.00 39.36 3.55
844 1381 5.128499 ACAAGGGACTAGATTGTGAGAGATG 59.872 44.000 0.00 0.00 38.49 2.90
940 1477 3.520691 AACCCCAAGTTTAGGAGGAAC 57.479 47.619 0.00 0.00 33.89 3.62
953 1491 5.024118 TCAAGAAACAAAGGTAAACCCCAA 58.976 37.500 0.00 0.00 36.42 4.12
1146 1688 2.494059 GGAAAGTGAGCTGCTGTTACA 58.506 47.619 7.01 0.00 0.00 2.41
1182 1725 4.828072 AGGGCAAAGTTAACAAAACCAA 57.172 36.364 8.61 0.00 0.00 3.67
1270 1813 1.829222 CCTACCCGTTTTAGCTCCTCA 59.171 52.381 0.00 0.00 0.00 3.86
1345 1888 3.525199 AGAATCTGGTAGTGCCCTGAATT 59.475 43.478 0.00 0.00 36.24 2.17
1419 1962 6.542370 CCCCGTGTAATCACTGAATTAGATTT 59.458 38.462 0.00 0.00 41.89 2.17
1420 1963 6.055588 CCCCGTGTAATCACTGAATTAGATT 58.944 40.000 0.00 0.00 41.89 2.40
1474 2018 0.109342 CTGAGCAAACCACTGAGGGT 59.891 55.000 0.00 0.00 45.04 4.34
1485 2029 7.598869 CAGTATTCTAACACAGTACTGAGCAAA 59.401 37.037 29.30 14.39 42.90 3.68
1493 2037 5.947443 ACGGTCAGTATTCTAACACAGTAC 58.053 41.667 0.00 0.00 0.00 2.73
1494 2038 6.881065 ACTACGGTCAGTATTCTAACACAGTA 59.119 38.462 0.00 0.00 34.34 2.74
1495 2039 5.709164 ACTACGGTCAGTATTCTAACACAGT 59.291 40.000 0.00 0.00 34.34 3.55
1496 2040 6.192234 ACTACGGTCAGTATTCTAACACAG 57.808 41.667 0.00 0.00 34.34 3.66
1497 2041 7.870509 ATACTACGGTCAGTATTCTAACACA 57.129 36.000 1.94 0.00 38.33 3.72
1516 2060 4.507756 CACACGTACACTAGCCGTATACTA 59.492 45.833 0.56 0.00 32.81 1.82
1534 2078 4.613944 TGACTAGGAAAACTACACACACG 58.386 43.478 0.00 0.00 0.00 4.49
1535 2079 5.813672 TGTTGACTAGGAAAACTACACACAC 59.186 40.000 0.00 0.00 0.00 3.82
1561 2105 2.630889 TCAGGAGAGGAGGAACATGT 57.369 50.000 0.00 0.00 0.00 3.21
1583 2127 1.750778 CTTGGCCACTTGAACACACTT 59.249 47.619 3.88 0.00 0.00 3.16
1584 2128 1.340991 ACTTGGCCACTTGAACACACT 60.341 47.619 3.88 0.00 0.00 3.55
1586 2130 1.102154 CACTTGGCCACTTGAACACA 58.898 50.000 3.88 0.00 0.00 3.72
1587 2131 0.249031 GCACTTGGCCACTTGAACAC 60.249 55.000 3.88 0.00 36.11 3.32
1638 2193 7.918033 CAGATCGAACACACTTGATCTATTAGT 59.082 37.037 3.50 0.00 44.21 2.24
1658 2213 4.676546 TGAGTGATAGCAAGTTCAGATCG 58.323 43.478 0.00 0.00 0.00 3.69
1664 2219 4.193826 TGACCTGAGTGATAGCAAGTTC 57.806 45.455 0.00 0.00 0.00 3.01
1697 2252 3.815401 CCACTGTGGAACTACAAGGAAAG 59.185 47.826 22.33 0.00 40.96 2.62
1842 2400 6.186420 TGCAAACATAAGAGCTATATCCCA 57.814 37.500 0.00 0.00 0.00 4.37
1859 2417 2.299867 AGGGATCACCAAACATGCAAAC 59.700 45.455 0.00 0.00 43.89 2.93
1895 2454 7.489113 CAGTTTGCAGCGGAAGAAATTAATATT 59.511 33.333 0.00 0.00 0.00 1.28
1906 2465 0.040958 GACACAGTTTGCAGCGGAAG 60.041 55.000 0.00 0.00 0.00 3.46
1909 2468 0.317269 CAAGACACAGTTTGCAGCGG 60.317 55.000 0.00 0.00 0.00 5.52
1910 2469 0.317269 CCAAGACACAGTTTGCAGCG 60.317 55.000 0.00 0.00 0.00 5.18
1937 2496 5.579753 AGAATATCTCATTCCTGGCACAT 57.420 39.130 0.00 0.00 38.20 3.21
1997 2556 8.961634 TCCATTCGGTAATCATTTTACATTCAA 58.038 29.630 0.00 0.00 0.00 2.69
2026 2585 6.962686 TGATGATTGTTCTGACTGTTTCAAG 58.037 36.000 0.00 0.00 32.21 3.02
2047 2606 5.891551 AGGCCGAACCAAAAGTTATTATGAT 59.108 36.000 0.00 0.00 43.14 2.45
2172 2737 7.498900 TCATATGTGTTACAAAATGCCTCTAGG 59.501 37.037 1.90 0.00 38.53 3.02
2237 2809 6.320926 TCATCACAAAGTCCACATTTCAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
2426 3004 7.501559 TCAAATTGGCAATTCTGGATTGAAAAA 59.498 29.630 24.51 3.67 46.59 1.94
2562 3148 2.017049 CAAAAGGGTGAAGATAGGGCG 58.983 52.381 0.00 0.00 0.00 6.13
2609 3209 3.751479 AAGGTTTCCTTGTCAATTGCC 57.249 42.857 0.00 0.00 42.96 4.52
2653 3253 5.934625 ACTAGTTCAAGCTTGACTGGTATTG 59.065 40.000 28.98 18.09 36.83 1.90
2676 3276 9.346725 CTCAAATTCTCCAATTAGCTTACAAAC 57.653 33.333 0.00 0.00 31.51 2.93
2691 3291 7.382898 AGTAGAGAACAGAACTCAAATTCTCC 58.617 38.462 8.32 0.00 44.14 3.71
2754 3354 7.220030 TCAAGCTTTCATAGTTGAGAGAAAGT 58.780 34.615 13.31 1.23 45.29 2.66
2759 3359 5.467902 GCTCAAGCTTTCATAGTTGAGAG 57.532 43.478 13.70 5.57 40.54 3.20
2805 3405 9.745323 GAAAAACTGCAATTGAATAATGTAAGC 57.255 29.630 10.34 0.00 0.00 3.09
2838 3438 1.808945 GAGCATAGCATACACCATGGC 59.191 52.381 13.04 0.00 34.97 4.40
2849 3449 5.932619 TTACTTCCTAGTTGAGCATAGCA 57.067 39.130 0.00 0.00 35.78 3.49
2959 3559 3.281727 AATGATGTGCATTAGTCGGGT 57.718 42.857 0.00 0.00 45.16 5.28
2987 3587 6.145048 GGTATCCTATTTCAATACAACGACCG 59.855 42.308 0.00 0.00 0.00 4.79
3097 3700 2.113860 TGCTTGTTAGGACATCTGGC 57.886 50.000 0.00 0.00 35.29 4.85
3186 3884 4.041938 ACAAGTTATTTGGGACGGAGGTAA 59.958 41.667 0.00 0.00 41.25 2.85
3187 3885 3.583966 ACAAGTTATTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 41.25 3.08
3188 3886 2.374170 ACAAGTTATTTGGGACGGAGGT 59.626 45.455 0.00 0.00 41.25 3.85
3189 3887 3.007635 GACAAGTTATTTGGGACGGAGG 58.992 50.000 0.00 0.00 41.25 4.30
3190 3888 3.939066 AGACAAGTTATTTGGGACGGAG 58.061 45.455 0.00 0.00 41.25 4.63
3191 3889 4.360951 AAGACAAGTTATTTGGGACGGA 57.639 40.909 0.00 0.00 41.25 4.69
3192 3890 5.484715 TCTAAGACAAGTTATTTGGGACGG 58.515 41.667 0.00 0.00 41.25 4.79
3193 3891 7.611213 AATCTAAGACAAGTTATTTGGGACG 57.389 36.000 0.00 0.00 41.25 4.79
3218 3916 9.907229 AGTGTTCGATACATCCATATCTAGATA 57.093 33.333 14.76 14.76 39.39 1.98
3219 3917 8.815565 AGTGTTCGATACATCCATATCTAGAT 57.184 34.615 10.73 10.73 39.39 1.98
3220 3918 9.734984 TTAGTGTTCGATACATCCATATCTAGA 57.265 33.333 0.00 0.00 39.39 2.43
3223 3921 9.477484 GTTTTAGTGTTCGATACATCCATATCT 57.523 33.333 4.21 0.00 39.39 1.98
3224 3922 8.425491 CGTTTTAGTGTTCGATACATCCATATC 58.575 37.037 4.21 0.00 39.39 1.63
3225 3923 7.924412 ACGTTTTAGTGTTCGATACATCCATAT 59.076 33.333 4.21 0.00 39.39 1.78
3226 3924 7.221259 CACGTTTTAGTGTTCGATACATCCATA 59.779 37.037 4.21 0.00 39.39 2.74
3227 3925 6.035650 CACGTTTTAGTGTTCGATACATCCAT 59.964 38.462 4.21 0.00 39.39 3.41
3228 3926 5.346551 CACGTTTTAGTGTTCGATACATCCA 59.653 40.000 4.21 0.00 39.39 3.41
3229 3927 5.782255 CACGTTTTAGTGTTCGATACATCC 58.218 41.667 4.21 0.00 39.39 3.51
3239 3937 8.521176 AGATGTATCTAGACACGTTTTAGTGTT 58.479 33.333 0.00 0.00 44.29 3.32
3240 3938 7.968956 CAGATGTATCTAGACACGTTTTAGTGT 59.031 37.037 0.00 2.14 45.65 3.55
3241 3939 7.968956 ACAGATGTATCTAGACACGTTTTAGTG 59.031 37.037 0.00 0.00 40.57 2.74
3242 3940 8.053026 ACAGATGTATCTAGACACGTTTTAGT 57.947 34.615 0.00 0.00 34.85 2.24
3264 3962 9.243637 GCTTGTCTTAGATTTGTCTAGATACAG 57.756 37.037 0.00 0.00 0.00 2.74
3265 3963 8.972127 AGCTTGTCTTAGATTTGTCTAGATACA 58.028 33.333 0.00 0.00 0.00 2.29
3266 3964 9.810545 AAGCTTGTCTTAGATTTGTCTAGATAC 57.189 33.333 0.00 0.00 32.10 2.24
3268 3966 9.732130 AAAAGCTTGTCTTAGATTTGTCTAGAT 57.268 29.630 0.00 0.00 34.28 1.98
3269 3967 9.561069 AAAAAGCTTGTCTTAGATTTGTCTAGA 57.439 29.630 0.00 0.00 34.28 2.43
3270 3968 9.604626 CAAAAAGCTTGTCTTAGATTTGTCTAG 57.395 33.333 0.00 0.00 34.28 2.43
3271 3969 8.567948 CCAAAAAGCTTGTCTTAGATTTGTCTA 58.432 33.333 0.00 0.00 34.28 2.59
3272 3970 7.428826 CCAAAAAGCTTGTCTTAGATTTGTCT 58.571 34.615 0.00 0.00 34.28 3.41
3273 3971 6.642540 CCCAAAAAGCTTGTCTTAGATTTGTC 59.357 38.462 0.00 0.00 34.28 3.18
3274 3972 6.323739 TCCCAAAAAGCTTGTCTTAGATTTGT 59.676 34.615 0.00 0.00 34.28 2.83
3275 3973 6.642540 GTCCCAAAAAGCTTGTCTTAGATTTG 59.357 38.462 0.00 4.37 34.28 2.32
3276 3974 6.323739 TGTCCCAAAAAGCTTGTCTTAGATTT 59.676 34.615 0.00 0.00 35.42 2.17
3277 3975 5.833131 TGTCCCAAAAAGCTTGTCTTAGATT 59.167 36.000 0.00 0.00 33.88 2.40
3278 3976 5.385198 TGTCCCAAAAAGCTTGTCTTAGAT 58.615 37.500 0.00 0.00 33.88 1.98
3279 3977 4.787551 TGTCCCAAAAAGCTTGTCTTAGA 58.212 39.130 0.00 0.00 33.88 2.10
3280 3978 4.821805 TCTGTCCCAAAAAGCTTGTCTTAG 59.178 41.667 0.00 0.00 33.88 2.18
3281 3979 4.787551 TCTGTCCCAAAAAGCTTGTCTTA 58.212 39.130 0.00 0.00 33.88 2.10
3282 3980 3.631250 TCTGTCCCAAAAAGCTTGTCTT 58.369 40.909 0.00 0.00 36.34 3.01
3283 3981 3.217626 CTCTGTCCCAAAAAGCTTGTCT 58.782 45.455 0.00 0.00 0.00 3.41
3284 3982 2.294512 CCTCTGTCCCAAAAAGCTTGTC 59.705 50.000 0.00 0.00 0.00 3.18
3285 3983 2.310538 CCTCTGTCCCAAAAAGCTTGT 58.689 47.619 0.00 0.00 0.00 3.16
3286 3984 1.615392 CCCTCTGTCCCAAAAAGCTTG 59.385 52.381 0.00 0.00 0.00 4.01
3287 3985 1.499007 TCCCTCTGTCCCAAAAAGCTT 59.501 47.619 0.00 0.00 0.00 3.74
3288 3986 1.074566 CTCCCTCTGTCCCAAAAAGCT 59.925 52.381 0.00 0.00 0.00 3.74
3289 3987 1.202940 ACTCCCTCTGTCCCAAAAAGC 60.203 52.381 0.00 0.00 0.00 3.51
3290 3988 2.959465 ACTCCCTCTGTCCCAAAAAG 57.041 50.000 0.00 0.00 0.00 2.27
3291 3989 6.045106 AGTTAATACTCCCTCTGTCCCAAAAA 59.955 38.462 0.00 0.00 0.00 1.94
3292 3990 5.550403 AGTTAATACTCCCTCTGTCCCAAAA 59.450 40.000 0.00 0.00 0.00 2.44
3293 3991 5.098663 AGTTAATACTCCCTCTGTCCCAAA 58.901 41.667 0.00 0.00 0.00 3.28
3294 3992 4.695606 AGTTAATACTCCCTCTGTCCCAA 58.304 43.478 0.00 0.00 0.00 4.12
3295 3993 4.348020 AGTTAATACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
3296 3994 5.898397 ACTTAGTTAATACTCCCTCTGTCCC 59.102 44.000 0.00 0.00 35.78 4.46
3297 3995 6.606395 TCACTTAGTTAATACTCCCTCTGTCC 59.394 42.308 0.00 0.00 35.78 4.02
3298 3996 7.339976 AGTCACTTAGTTAATACTCCCTCTGTC 59.660 40.741 0.00 0.00 35.78 3.51
3299 3997 7.183460 AGTCACTTAGTTAATACTCCCTCTGT 58.817 38.462 0.00 0.00 35.78 3.41
3300 3998 7.648039 AGTCACTTAGTTAATACTCCCTCTG 57.352 40.000 0.00 0.00 35.78 3.35
3301 3999 9.765295 TTAAGTCACTTAGTTAATACTCCCTCT 57.235 33.333 0.00 0.00 35.78 3.69
3303 4001 9.544579 ACTTAAGTCACTTAGTTAATACTCCCT 57.455 33.333 1.12 0.00 33.50 4.20
3304 4002 9.800433 GACTTAAGTCACTTAGTTAATACTCCC 57.200 37.037 27.12 0.00 44.18 4.30
3340 4091 6.665992 ACTAGACATAAGAACTGAACCACA 57.334 37.500 0.00 0.00 0.00 4.17
3342 4093 7.811236 CGTTTACTAGACATAAGAACTGAACCA 59.189 37.037 0.00 0.00 0.00 3.67
3343 4094 7.275123 CCGTTTACTAGACATAAGAACTGAACC 59.725 40.741 0.00 0.00 0.00 3.62
3403 4154 0.178964 CCCAAAAGAACTGGCCCTCA 60.179 55.000 0.00 0.00 32.10 3.86
3404 4155 0.900182 CCCCAAAAGAACTGGCCCTC 60.900 60.000 0.00 0.00 32.10 4.30
3451 4202 4.045022 TCTAGAATAAACTGGGGAAGGGG 58.955 47.826 0.00 0.00 0.00 4.79
3463 4214 9.541884 AATTTTAGGTTGGGCTTCTAGAATAAA 57.458 29.630 5.44 2.93 0.00 1.40
3511 4262 3.462982 CAAACAAGCTTTGGGGTTAACC 58.537 45.455 16.85 16.85 33.96 2.85
3512 4263 2.869801 GCAAACAAGCTTTGGGGTTAAC 59.130 45.455 0.00 0.00 33.96 2.01
3513 4264 2.501723 TGCAAACAAGCTTTGGGGTTAA 59.498 40.909 0.00 0.00 33.96 2.01
3514 4265 2.111384 TGCAAACAAGCTTTGGGGTTA 58.889 42.857 0.00 0.00 33.96 2.85
3515 4266 0.908198 TGCAAACAAGCTTTGGGGTT 59.092 45.000 0.00 0.00 35.89 4.11
3701 4567 2.364632 TCCCATCTTTATGCAACACCG 58.635 47.619 0.00 0.00 0.00 4.94
3777 4643 8.475331 AATTCTTTGTGAGTATGGTACTTACG 57.525 34.615 7.31 0.00 45.23 3.18
3981 4850 6.064717 GTGGCATACCTTGAATATTCTCCTT 58.935 40.000 16.24 1.97 36.63 3.36
4068 4937 4.326826 TGATGAGCCTTGGAAGTTTACAG 58.673 43.478 0.00 0.00 0.00 2.74
4084 4953 2.161808 CAGGCAGAACAAAGCTGATGAG 59.838 50.000 6.76 0.00 35.39 2.90
4088 4957 1.597742 GACAGGCAGAACAAAGCTGA 58.402 50.000 0.00 0.00 35.39 4.26
4103 4972 4.466828 CAGCAAAAGTGTAATTCGGACAG 58.533 43.478 0.00 0.00 0.00 3.51
4123 4992 6.593770 TGTACTAATACAACATTGGTGAGCAG 59.406 38.462 9.09 2.69 38.40 4.24
4148 5017 6.235231 TGAAGTCAGAACTAAAACCTGAGT 57.765 37.500 0.00 0.00 41.01 3.41
4157 5026 5.412594 GCCATCACATTGAAGTCAGAACTAA 59.587 40.000 0.00 0.00 33.48 2.24
4163 5032 3.733988 GCATGCCATCACATTGAAGTCAG 60.734 47.826 6.36 0.00 0.00 3.51
4173 5042 0.901114 AGCTTTGGCATGCCATCACA 60.901 50.000 38.78 22.39 46.64 3.58
4191 5061 7.202526 TGTTCAGAAAGCAGAATAAACCAAAG 58.797 34.615 0.00 0.00 0.00 2.77
4203 5073 3.252701 AGCTTGTGATGTTCAGAAAGCAG 59.747 43.478 19.20 0.00 43.93 4.24
4290 5165 9.103048 GTGAGTGTTCAAATAAATAGTTCAACG 57.897 33.333 0.00 0.00 34.49 4.10
4297 5172 8.783093 TGAACTGGTGAGTGTTCAAATAAATAG 58.217 33.333 6.14 0.00 46.17 1.73
4375 5487 1.676014 CGACTTCAGGGCTTAAGGTGG 60.676 57.143 4.29 0.00 0.00 4.61
4395 5518 5.104735 ACACAAGGAGATAGGGAAGAACATC 60.105 44.000 0.00 0.00 0.00 3.06
4418 5542 2.960819 AGTAGCTGGATGTCGTTTCAC 58.039 47.619 0.00 0.00 0.00 3.18
4419 5543 4.219944 AGTTAGTAGCTGGATGTCGTTTCA 59.780 41.667 0.00 0.00 0.00 2.69
4422 5546 6.466885 AATAGTTAGTAGCTGGATGTCGTT 57.533 37.500 0.00 0.00 0.00 3.85
4423 5547 7.762588 ATAATAGTTAGTAGCTGGATGTCGT 57.237 36.000 0.00 0.00 0.00 4.34
4424 5548 9.477484 AAAATAATAGTTAGTAGCTGGATGTCG 57.523 33.333 0.00 0.00 0.00 4.35
4426 5550 9.561069 CCAAAATAATAGTTAGTAGCTGGATGT 57.439 33.333 0.00 0.00 0.00 3.06
4444 5568 5.182380 GGTGCAGCACTTACTACCAAAATAA 59.818 40.000 24.75 0.00 34.40 1.40
4447 5571 2.882137 GGTGCAGCACTTACTACCAAAA 59.118 45.455 24.75 0.00 34.40 2.44
4506 5631 6.071728 CCAAAGCTTGATGGTCTATTCAACTT 60.072 38.462 8.77 0.00 31.84 2.66
4625 5752 7.872113 ATACAAGAAGCAAAAAGGATAGAGG 57.128 36.000 0.00 0.00 0.00 3.69
4645 5772 6.534475 ACCGAGTCCAGTTGTATTTATACA 57.466 37.500 0.00 0.00 41.19 2.29
4647 5774 8.530311 TGTTAACCGAGTCCAGTTGTATTTATA 58.470 33.333 2.48 0.00 0.00 0.98
4657 5784 3.368116 GCATACTGTTAACCGAGTCCAGT 60.368 47.826 2.48 0.63 39.53 4.00
4661 5788 4.326548 GTCAAGCATACTGTTAACCGAGTC 59.673 45.833 2.48 0.00 0.00 3.36
4665 5792 4.242475 TCTGTCAAGCATACTGTTAACCG 58.758 43.478 2.48 0.00 0.00 4.44
4737 5864 9.775854 AAGTGCTACTTCTCGTATAGTAGATAA 57.224 33.333 18.13 6.15 44.18 1.75
4740 5867 8.396390 CAAAAGTGCTACTTCTCGTATAGTAGA 58.604 37.037 18.13 0.00 44.18 2.59
4759 5887 6.992063 ACCATAGATAACTGAGCAAAAGTG 57.008 37.500 0.00 0.00 0.00 3.16
4778 5906 5.130975 TGAGTAGGCATACATTCTGAACCAT 59.869 40.000 11.63 0.00 34.07 3.55
4803 5936 0.176910 TGCAGGTTCACGACAGTTGA 59.823 50.000 0.00 0.00 0.00 3.18
4804 5937 0.583438 CTGCAGGTTCACGACAGTTG 59.417 55.000 5.57 0.00 0.00 3.16
4805 5938 0.532862 CCTGCAGGTTCACGACAGTT 60.533 55.000 25.53 0.00 0.00 3.16
4846 5979 3.733443 ACCTTCATTTTCTGGTGCAAC 57.267 42.857 0.00 0.00 0.00 4.17
4872 6005 4.038042 CCTCAACCTCAACCTTTTTCCTTC 59.962 45.833 0.00 0.00 0.00 3.46
4956 6095 0.196631 AACCCACCCTTACCTACCCA 59.803 55.000 0.00 0.00 0.00 4.51
4975 6116 1.550524 CTCTTGAATGTCCTCGGTGGA 59.449 52.381 0.00 0.00 43.86 4.02
4976 6117 1.406069 CCTCTTGAATGTCCTCGGTGG 60.406 57.143 0.00 0.00 37.10 4.61
5078 6331 2.449031 TTACAGCGGACCTGGCAGTG 62.449 60.000 14.43 6.37 46.14 3.66
5082 6335 0.107654 AAGATTACAGCGGACCTGGC 60.108 55.000 0.00 0.00 46.14 4.85
5086 6339 2.695359 TGACAAAGATTACAGCGGACC 58.305 47.619 0.00 0.00 0.00 4.46
5100 6353 1.337823 GCGAGAGGGTAGCTTGACAAA 60.338 52.381 0.00 0.00 0.00 2.83
5173 6428 9.872721 CTATATTTATGACTCTGCTGATCATGT 57.127 33.333 19.28 6.04 34.86 3.21
5232 6487 8.786898 GCTCTATTTTTCATTGATGCACCTATA 58.213 33.333 0.00 0.00 0.00 1.31
5275 6530 0.179065 AAGTTAGAATACGCCGGGGC 60.179 55.000 19.97 1.59 37.85 5.80
5316 6571 1.331214 CTGGGTCAATTGGTTGCAGT 58.669 50.000 5.42 0.00 35.26 4.40
5356 6611 4.410743 GCTGGACGCAAGCTTGGC 62.411 66.667 27.10 16.73 45.62 4.52
5361 6616 0.952984 AGAAAGAGCTGGACGCAAGC 60.953 55.000 0.00 0.00 42.61 4.01
5362 6617 1.462670 GAAGAAAGAGCTGGACGCAAG 59.537 52.381 0.00 0.00 42.61 4.01
5363 6618 1.202639 TGAAGAAAGAGCTGGACGCAA 60.203 47.619 0.00 0.00 42.61 4.85
5364 6619 0.392706 TGAAGAAAGAGCTGGACGCA 59.607 50.000 0.00 0.00 42.61 5.24
5365 6620 1.074752 CTGAAGAAAGAGCTGGACGC 58.925 55.000 0.00 0.00 39.57 5.19
5366 6621 1.074752 GCTGAAGAAAGAGCTGGACG 58.925 55.000 0.00 0.00 32.12 4.79
5367 6622 2.175878 TGCTGAAGAAAGAGCTGGAC 57.824 50.000 0.00 0.00 36.11 4.02
5368 6623 2.158769 TGTTGCTGAAGAAAGAGCTGGA 60.159 45.455 0.00 0.00 36.11 3.86
5369 6624 2.224606 TGTTGCTGAAGAAAGAGCTGG 58.775 47.619 0.00 0.00 36.11 4.85
5370 6625 3.059051 GTCTGTTGCTGAAGAAAGAGCTG 60.059 47.826 0.00 0.00 36.11 4.24
5391 6646 4.222145 TGAAGTTATAGAGGAACAAGCGGT 59.778 41.667 0.00 0.00 0.00 5.68
5397 6652 5.546499 ACCCAGTTGAAGTTATAGAGGAACA 59.454 40.000 0.00 0.00 0.00 3.18
5438 6693 2.132762 GGGTATTGTCGATGGTAAGCG 58.867 52.381 0.00 0.00 36.26 4.68
5446 6701 1.489230 GTCCCCAAGGGTATTGTCGAT 59.511 52.381 4.11 0.00 44.74 3.59
5460 6715 1.151810 AGGAAGAAGCCAGTCCCCA 60.152 57.895 0.00 0.00 31.25 4.96
5628 6885 0.248094 CACATGAATCTGCAGCAGCG 60.248 55.000 18.43 4.15 46.23 5.18
5636 7020 5.381174 TCCAAGAAAAGCACATGAATCTG 57.619 39.130 0.00 0.00 0.00 2.90
5709 7093 5.811399 TCCTAAATATGACGTTTTGGCAG 57.189 39.130 0.00 0.00 33.39 4.85
5717 7101 3.069158 CCCTCCGTTCCTAAATATGACGT 59.931 47.826 0.00 0.00 32.26 4.34
5743 7129 7.936584 TGGTGTATCGTTGAAAAAGAAAAGAT 58.063 30.769 0.00 0.00 37.97 2.40
5775 7161 5.363562 TCTTCAATGATACTGATGCACCT 57.636 39.130 0.00 0.00 0.00 4.00
5782 7168 5.396101 CCTGGCTCTTCTTCAATGATACTGA 60.396 44.000 0.00 0.00 0.00 3.41
5839 7225 1.423541 TCATTGTAGCTGGGGTGTTGT 59.576 47.619 0.00 0.00 0.00 3.32
5847 7233 3.498397 AGTTGTTTCGTCATTGTAGCTGG 59.502 43.478 0.00 0.00 0.00 4.85
5853 7239 1.263217 GGCGAGTTGTTTCGTCATTGT 59.737 47.619 0.00 0.00 44.18 2.71
5854 7240 1.531149 AGGCGAGTTGTTTCGTCATTG 59.469 47.619 2.79 0.00 46.99 2.82
5861 7247 3.059120 GGTTTGACTAGGCGAGTTGTTTC 60.059 47.826 0.71 0.00 39.06 2.78
5879 7265 2.293399 GCCATTTTGTGTCTCGAGGTTT 59.707 45.455 13.56 0.00 0.00 3.27
5886 7272 2.229784 CCTCCTTGCCATTTTGTGTCTC 59.770 50.000 0.00 0.00 0.00 3.36
5909 7295 3.801594 GCGATCCTTGATCTTTGAGTCTC 59.198 47.826 0.00 0.00 36.96 3.36
5932 7321 2.886523 CTGTCATGGTGTTGGTTGTGAT 59.113 45.455 0.00 0.00 0.00 3.06
5948 7337 1.832608 AGACAGGGTCGTGCTGTCA 60.833 57.895 4.86 0.00 46.93 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.