Multiple sequence alignment - TraesCS7A01G515500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G515500 chr7A 100.000 2657 0 0 1 2657 701148419 701151075 0.000000e+00 4907.0
1 TraesCS7A01G515500 chr7A 85.540 491 60 5 40 520 701125364 701125853 1.100000e-138 503.0
2 TraesCS7A01G515500 chr7A 78.571 224 36 11 989 1206 93081894 93082111 1.280000e-28 137.0
3 TraesCS7A01G515500 chr7A 91.111 90 5 1 703 792 701127878 701127964 4.650000e-23 119.0
4 TraesCS7A01G515500 chr7D 86.933 1454 100 40 519 1909 611135153 611136579 0.000000e+00 1550.0
5 TraesCS7A01G515500 chr7D 84.830 501 60 10 40 530 611128080 611128574 8.550000e-135 490.0
6 TraesCS7A01G515500 chr7D 81.583 581 68 14 2085 2657 611136602 611137151 6.750000e-121 444.0
7 TraesCS7A01G515500 chr7D 94.737 152 8 0 1905 2056 74476367 74476216 1.230000e-58 237.0
8 TraesCS7A01G515500 chr7D 77.256 277 42 20 992 1257 91143775 91143509 2.760000e-30 143.0
9 TraesCS7A01G515500 chr7B 86.728 1424 68 42 516 1897 700183683 700185027 0.000000e+00 1471.0
10 TraesCS7A01G515500 chr7B 84.087 553 39 26 2121 2654 700185096 700185618 3.070000e-134 488.0
11 TraesCS7A01G515500 chr7B 76.978 278 41 21 992 1257 43754619 43754353 1.280000e-28 137.0
12 TraesCS7A01G515500 chr7B 100.000 28 0 0 2056 2083 173341613 173341586 5.000000e-03 52.8
13 TraesCS7A01G515500 chr2A 96.053 152 6 0 1905 2056 737478041 737477890 5.680000e-62 248.0
14 TraesCS7A01G515500 chr2A 81.768 181 29 4 1001 1179 742293582 742293404 5.930000e-32 148.0
15 TraesCS7A01G515500 chr5A 95.425 153 7 0 1905 2057 126692579 126692731 7.350000e-61 244.0
16 TraesCS7A01G515500 chr5A 100.000 29 0 0 2058 2086 686412882 686412910 1.000000e-03 54.7
17 TraesCS7A01G515500 chr3D 95.973 149 6 0 1905 2053 613396381 613396233 2.640000e-60 243.0
18 TraesCS7A01G515500 chr3D 94.737 152 8 0 1905 2056 131236247 131236096 1.230000e-58 237.0
19 TraesCS7A01G515500 chr3D 88.421 190 15 7 1905 2089 217587709 217587522 3.440000e-54 222.0
20 TraesCS7A01G515500 chrUn 95.364 151 7 0 1905 2055 61009592 61009442 9.500000e-60 241.0
21 TraesCS7A01G515500 chr5D 94.231 156 8 1 1902 2056 421112251 421112406 1.230000e-58 237.0
22 TraesCS7A01G515500 chr5D 94.737 152 8 0 1905 2056 421530555 421530404 1.230000e-58 237.0
23 TraesCS7A01G515500 chr2D 81.768 181 29 4 1001 1179 609515761 609515583 5.930000e-32 148.0
24 TraesCS7A01G515500 chr2B 80.769 182 29 6 1001 1179 744058437 744058259 1.280000e-28 137.0
25 TraesCS7A01G515500 chr2B 100.000 29 0 0 2054 2082 264460371 264460399 1.000000e-03 54.7
26 TraesCS7A01G515500 chr1D 100.000 29 0 0 2059 2087 189199109 189199137 1.000000e-03 54.7
27 TraesCS7A01G515500 chr1D 100.000 28 0 0 2058 2085 356182240 356182267 5.000000e-03 52.8
28 TraesCS7A01G515500 chr6A 100.000 28 0 0 2062 2089 163200325 163200298 5.000000e-03 52.8
29 TraesCS7A01G515500 chr1B 100.000 28 0 0 2057 2084 208180841 208180868 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G515500 chr7A 701148419 701151075 2656 False 4907.0 4907 100.0000 1 2657 1 chr7A.!!$F2 2656
1 TraesCS7A01G515500 chr7A 701125364 701127964 2600 False 311.0 503 88.3255 40 792 2 chr7A.!!$F3 752
2 TraesCS7A01G515500 chr7D 611135153 611137151 1998 False 997.0 1550 84.2580 519 2657 2 chr7D.!!$F2 2138
3 TraesCS7A01G515500 chr7B 700183683 700185618 1935 False 979.5 1471 85.4075 516 2654 2 chr7B.!!$F1 2138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 269 0.326927 CCCTCCCGTCCTTTTTAGCA 59.673 55.0 0.0 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 3670 0.397816 ATGAGAAGGGACCGAGGGAG 60.398 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.957402 AAGGTCCACATGCAAGAAGA 57.043 45.000 0.00 0.00 0.00 2.87
20 21 2.486472 AGGTCCACATGCAAGAAGAG 57.514 50.000 0.00 0.00 0.00 2.85
21 22 1.701847 AGGTCCACATGCAAGAAGAGT 59.298 47.619 0.00 0.00 0.00 3.24
22 23 1.808945 GGTCCACATGCAAGAAGAGTG 59.191 52.381 0.00 0.00 0.00 3.51
23 24 2.550855 GGTCCACATGCAAGAAGAGTGA 60.551 50.000 0.00 0.00 32.14 3.41
24 25 3.141398 GTCCACATGCAAGAAGAGTGAA 58.859 45.455 0.00 0.00 32.14 3.18
25 26 3.755378 GTCCACATGCAAGAAGAGTGAAT 59.245 43.478 0.00 0.00 32.14 2.57
26 27 4.005650 TCCACATGCAAGAAGAGTGAATC 58.994 43.478 0.00 0.00 32.14 2.52
27 28 3.128242 CCACATGCAAGAAGAGTGAATCC 59.872 47.826 0.00 0.00 32.14 3.01
28 29 4.008330 CACATGCAAGAAGAGTGAATCCT 58.992 43.478 0.00 0.00 32.14 3.24
29 30 5.181009 CACATGCAAGAAGAGTGAATCCTA 58.819 41.667 0.00 0.00 32.14 2.94
30 31 5.645067 CACATGCAAGAAGAGTGAATCCTAA 59.355 40.000 0.00 0.00 32.14 2.69
31 32 5.645497 ACATGCAAGAAGAGTGAATCCTAAC 59.355 40.000 0.00 0.00 0.00 2.34
32 33 4.245660 TGCAAGAAGAGTGAATCCTAACG 58.754 43.478 0.00 0.00 0.00 3.18
33 34 4.021456 TGCAAGAAGAGTGAATCCTAACGA 60.021 41.667 0.00 0.00 0.00 3.85
34 35 4.327627 GCAAGAAGAGTGAATCCTAACGAC 59.672 45.833 0.00 0.00 0.00 4.34
35 36 5.470368 CAAGAAGAGTGAATCCTAACGACA 58.530 41.667 0.00 0.00 0.00 4.35
36 37 5.923733 AGAAGAGTGAATCCTAACGACAT 57.076 39.130 0.00 0.00 0.00 3.06
37 38 5.655488 AGAAGAGTGAATCCTAACGACATG 58.345 41.667 0.00 0.00 0.00 3.21
38 39 4.392921 AGAGTGAATCCTAACGACATGG 57.607 45.455 0.00 0.00 0.00 3.66
99 100 7.336396 AGCTAGCTATATCATCATGCAAATGA 58.664 34.615 17.69 15.17 37.53 2.57
120 121 9.783081 AAATGAAAATTGGTCTCAAAAGCTTAT 57.217 25.926 0.00 0.00 36.36 1.73
123 124 6.916360 AAATTGGTCTCAAAAGCTTATGGA 57.084 33.333 0.00 0.00 36.36 3.41
124 125 7.486407 AAATTGGTCTCAAAAGCTTATGGAT 57.514 32.000 0.00 0.00 36.36 3.41
129 130 6.767902 TGGTCTCAAAAGCTTATGGATATGTC 59.232 38.462 0.00 0.00 0.00 3.06
132 133 9.494271 GTCTCAAAAGCTTATGGATATGTCATA 57.506 33.333 0.00 0.00 0.00 2.15
174 176 3.308438 ACACGGCAGTAGTAAAACGAT 57.692 42.857 0.00 0.00 0.00 3.73
180 182 3.001365 GGCAGTAGTAAAACGATCGAACG 60.001 47.826 24.34 13.95 39.31 3.95
189 195 2.657620 GATCGAACGCGTAGGCCC 60.658 66.667 14.46 0.00 38.98 5.80
196 202 4.832608 CGCGTAGGCCCCTCCAAC 62.833 72.222 0.00 0.00 37.29 3.77
199 205 4.484872 GTAGGCCCCTCCAACGGC 62.485 72.222 0.00 0.00 44.92 5.68
239 245 2.110967 CCTTGTCGCCTCTGCCATG 61.111 63.158 0.00 0.00 0.00 3.66
244 250 3.207669 CGCCTCTGCCATGGCTTC 61.208 66.667 35.53 18.50 46.42 3.86
263 269 0.326927 CCCTCCCGTCCTTTTTAGCA 59.673 55.000 0.00 0.00 0.00 3.49
266 272 2.355716 CCTCCCGTCCTTTTTAGCATCA 60.356 50.000 0.00 0.00 0.00 3.07
301 312 8.984855 TGCTTGATCATCATATCTATCCATACA 58.015 33.333 0.00 0.00 0.00 2.29
319 330 7.703298 CCATACATGGTGCTTTGAATTATTG 57.297 36.000 0.00 0.00 43.05 1.90
325 336 7.714377 ACATGGTGCTTTGAATTATTGTTTTCA 59.286 29.630 0.00 0.00 0.00 2.69
329 340 7.307337 GGTGCTTTGAATTATTGTTTTCAGTGG 60.307 37.037 0.00 0.00 33.68 4.00
356 367 4.698583 AATCTATATACGCGTGGTCCTC 57.301 45.455 24.59 0.00 0.00 3.71
378 389 5.478407 TCGAACAACACATATCATGTCTGT 58.522 37.500 0.00 0.00 42.70 3.41
382 393 5.105063 ACAACACATATCATGTCTGTCTCG 58.895 41.667 0.00 0.00 42.70 4.04
387 398 4.037327 ACATATCATGTCTGTCTCGTCCTG 59.963 45.833 0.00 0.00 39.92 3.86
419 430 6.840780 AAGTGGATTAACTTGAGGGAAATG 57.159 37.500 0.00 0.00 38.95 2.32
425 436 7.285401 TGGATTAACTTGAGGGAAATGATTAGC 59.715 37.037 0.00 0.00 0.00 3.09
428 439 9.866655 ATTAACTTGAGGGAAATGATTAGCATA 57.133 29.630 0.00 0.00 35.78 3.14
439 450 2.231478 TGATTAGCATACCTAGCTCGGC 59.769 50.000 3.73 0.00 42.32 5.54
447 458 0.977395 ACCTAGCTCGGCTTGACTTT 59.023 50.000 3.73 0.00 40.44 2.66
448 459 1.338200 ACCTAGCTCGGCTTGACTTTG 60.338 52.381 3.73 0.00 40.44 2.77
467 478 2.494059 TGCTTTTCTCCACCGAAGAAG 58.506 47.619 0.00 0.00 34.42 2.85
477 488 4.766375 TCCACCGAAGAAGAAACATATCC 58.234 43.478 0.00 0.00 0.00 2.59
482 493 4.757149 CCGAAGAAGAAACATATCCCCATC 59.243 45.833 0.00 0.00 0.00 3.51
486 497 3.576078 AGAAACATATCCCCATCGCAA 57.424 42.857 0.00 0.00 0.00 4.85
487 498 3.214328 AGAAACATATCCCCATCGCAAC 58.786 45.455 0.00 0.00 0.00 4.17
493 504 1.094785 ATCCCCATCGCAACGAAAAG 58.905 50.000 0.00 0.00 39.99 2.27
499 510 3.304794 CCCATCGCAACGAAAAGGTTAAA 60.305 43.478 0.00 0.00 39.99 1.52
501 512 4.381566 CCATCGCAACGAAAAGGTTAAAAG 59.618 41.667 0.00 0.00 39.99 2.27
503 514 3.065648 TCGCAACGAAAAGGTTAAAAGCT 59.934 39.130 0.00 0.00 33.32 3.74
510 521 5.049267 ACGAAAAGGTTAAAAGCTATCGCAA 60.049 36.000 20.53 0.00 43.58 4.85
528 539 1.134946 CAAAATGATGTCCCCGCCTTC 59.865 52.381 0.00 0.00 0.00 3.46
565 1255 3.512516 GTGGATTCGCTGCTGGCC 61.513 66.667 0.00 0.00 37.74 5.36
665 1364 3.118775 GGATCCAAGCCCCATAAAAACAC 60.119 47.826 6.95 0.00 0.00 3.32
671 2543 2.627699 AGCCCCATAAAAACACACTGTG 59.372 45.455 7.68 7.68 39.75 3.66
694 2580 5.106277 TGACACTTCAAGATAGGAGTGTACG 60.106 44.000 7.94 0.00 40.07 3.67
767 2653 2.726912 CGTTTTGTGGCAGCAGCG 60.727 61.111 0.00 0.00 43.41 5.18
768 2654 2.355009 GTTTTGTGGCAGCAGCGG 60.355 61.111 0.00 0.00 43.41 5.52
769 2655 4.283403 TTTTGTGGCAGCAGCGGC 62.283 61.111 9.33 9.33 43.41 6.53
835 2721 3.898509 GCAACCAACTGCGTGCCA 61.899 61.111 0.00 0.00 31.50 4.92
836 2722 2.026014 CAACCAACTGCGTGCCAC 59.974 61.111 0.00 0.00 0.00 5.01
842 2728 3.832237 AACTGCGTGCCACCTCTGG 62.832 63.158 0.00 0.00 41.13 3.86
851 2737 2.667418 CACCTCTGGTCTGGCTGG 59.333 66.667 0.00 0.00 31.02 4.85
854 2740 2.268280 CTCTGGTCTGGCTGGCTG 59.732 66.667 2.00 1.75 0.00 4.85
855 2741 2.527624 TCTGGTCTGGCTGGCTGT 60.528 61.111 2.00 0.00 0.00 4.40
898 2788 1.520174 CACGCACGAATCATGAGCTAG 59.480 52.381 0.09 0.00 0.00 3.42
899 2789 0.506080 CGCACGAATCATGAGCTAGC 59.494 55.000 6.62 6.62 0.00 3.42
900 2790 0.864455 GCACGAATCATGAGCTAGCC 59.136 55.000 12.13 3.49 0.00 3.93
901 2791 1.807755 GCACGAATCATGAGCTAGCCA 60.808 52.381 12.13 9.78 0.00 4.75
903 2793 1.482182 ACGAATCATGAGCTAGCCACA 59.518 47.619 12.13 12.80 0.00 4.17
904 2794 2.133553 CGAATCATGAGCTAGCCACAG 58.866 52.381 12.13 6.18 0.00 3.66
905 2795 2.482664 CGAATCATGAGCTAGCCACAGT 60.483 50.000 12.13 0.00 0.00 3.55
906 2796 3.539604 GAATCATGAGCTAGCCACAGTT 58.460 45.455 12.13 8.75 0.00 3.16
907 2797 4.697514 GAATCATGAGCTAGCCACAGTTA 58.302 43.478 12.13 2.87 0.00 2.24
908 2798 3.526931 TCATGAGCTAGCCACAGTTAC 57.473 47.619 12.13 0.00 0.00 2.50
909 2799 2.831526 TCATGAGCTAGCCACAGTTACA 59.168 45.455 12.13 0.00 0.00 2.41
910 2800 3.260632 TCATGAGCTAGCCACAGTTACAA 59.739 43.478 12.13 0.00 0.00 2.41
925 2819 6.201044 CACAGTTACAACTTACAAGTGAGAGG 59.799 42.308 0.00 0.00 39.66 3.69
926 2820 6.097839 ACAGTTACAACTTACAAGTGAGAGGA 59.902 38.462 0.00 0.00 39.66 3.71
928 2822 6.550108 AGTTACAACTTACAAGTGAGAGGAGA 59.450 38.462 0.00 0.00 39.66 3.71
929 2823 7.233757 AGTTACAACTTACAAGTGAGAGGAGAT 59.766 37.037 0.00 0.00 39.66 2.75
930 2824 6.031751 ACAACTTACAAGTGAGAGGAGATC 57.968 41.667 0.00 0.00 39.66 2.75
932 2826 4.337145 ACTTACAAGTGAGAGGAGATCGT 58.663 43.478 0.00 0.00 37.98 3.73
933 2827 4.767928 ACTTACAAGTGAGAGGAGATCGTT 59.232 41.667 0.00 0.00 37.98 3.85
934 2828 3.859411 ACAAGTGAGAGGAGATCGTTC 57.141 47.619 0.00 0.00 0.00 3.95
935 2829 2.162608 ACAAGTGAGAGGAGATCGTTCG 59.837 50.000 0.00 0.00 0.00 3.95
936 2830 1.384525 AGTGAGAGGAGATCGTTCGG 58.615 55.000 0.00 0.00 0.00 4.30
984 2904 5.249852 AGAGAGGTCTTAGAGTGTGTAGAGT 59.750 44.000 0.00 0.00 0.00 3.24
987 2907 5.005094 AGGTCTTAGAGTGTGTAGAGTGAC 58.995 45.833 0.00 0.00 0.00 3.67
998 2918 3.938963 GTGTAGAGTGACAGAGAGAGAGG 59.061 52.174 0.00 0.00 0.00 3.69
1092 3042 2.185608 GAGAACGAGCTGGAGCCC 59.814 66.667 1.44 0.00 43.38 5.19
1545 3510 2.708255 GCGTACGAGGACGAGGAG 59.292 66.667 21.65 0.00 45.82 3.69
1548 3513 1.427592 CGTACGAGGACGAGGAGGAC 61.428 65.000 10.44 0.00 45.82 3.85
1689 3655 3.685214 GACTGACGACGCCGAGCAT 62.685 63.158 0.00 0.00 39.50 3.79
1691 3657 3.971453 CTGACGACGCCGAGCATGT 62.971 63.158 0.00 0.00 39.50 3.21
1703 3669 3.797039 CCGAGCATGTCATTTCCTCTTA 58.203 45.455 0.00 0.00 0.00 2.10
1704 3670 3.557595 CCGAGCATGTCATTTCCTCTTAC 59.442 47.826 0.00 0.00 0.00 2.34
1705 3671 4.437239 CGAGCATGTCATTTCCTCTTACT 58.563 43.478 0.00 0.00 0.00 2.24
1712 3679 3.031736 TCATTTCCTCTTACTCCCTCGG 58.968 50.000 0.00 0.00 0.00 4.63
1722 3689 1.000486 CTCCCTCGGTCCCTTCTCA 60.000 63.158 0.00 0.00 0.00 3.27
1745 3716 8.777865 TCATGATCGAGATTACTGTTTTCTTT 57.222 30.769 0.00 0.00 0.00 2.52
1788 3759 3.641017 GCCTCTGGCTTTGTCTTCT 57.359 52.632 0.73 0.00 46.69 2.85
1789 3760 1.163554 GCCTCTGGCTTTGTCTTCTG 58.836 55.000 0.73 0.00 46.69 3.02
1790 3761 1.544314 GCCTCTGGCTTTGTCTTCTGT 60.544 52.381 0.73 0.00 46.69 3.41
1791 3762 2.289694 GCCTCTGGCTTTGTCTTCTGTA 60.290 50.000 0.73 0.00 46.69 2.74
1792 3763 3.807209 GCCTCTGGCTTTGTCTTCTGTAA 60.807 47.826 0.73 0.00 46.69 2.41
1793 3764 4.389374 CCTCTGGCTTTGTCTTCTGTAAA 58.611 43.478 0.00 0.00 0.00 2.01
1805 3776 9.997482 TTTGTCTTCTGTAAACTGTAAAATGAC 57.003 29.630 0.00 0.00 0.00 3.06
1808 3779 7.798982 GTCTTCTGTAAACTGTAAAATGACTGC 59.201 37.037 0.00 0.00 0.00 4.40
1809 3780 6.223138 TCTGTAAACTGTAAAATGACTGCG 57.777 37.500 0.00 0.00 0.00 5.18
1868 3847 2.030946 GCGCACCACATCTGAAACTATC 59.969 50.000 0.30 0.00 0.00 2.08
1870 3849 3.308053 CGCACCACATCTGAAACTATCTG 59.692 47.826 0.00 0.00 0.00 2.90
1871 3850 3.064545 GCACCACATCTGAAACTATCTGC 59.935 47.826 0.00 0.00 0.00 4.26
1872 3851 3.624861 CACCACATCTGAAACTATCTGCC 59.375 47.826 0.00 0.00 0.00 4.85
1873 3852 3.209410 CCACATCTGAAACTATCTGCCC 58.791 50.000 0.00 0.00 0.00 5.36
1878 3857 0.739462 TGAAACTATCTGCCCGCACG 60.739 55.000 0.00 0.00 0.00 5.34
1897 3876 0.751643 GCCACACCAACAGACCAACT 60.752 55.000 0.00 0.00 0.00 3.16
1913 3895 8.176814 CAGACCAACTGCATTGTAAATATTTG 57.823 34.615 11.05 0.00 39.86 2.32
1915 3897 8.028938 AGACCAACTGCATTGTAAATATTTGTC 58.971 33.333 11.05 4.95 36.47 3.18
1916 3898 7.895759 ACCAACTGCATTGTAAATATTTGTCT 58.104 30.769 11.05 0.00 36.47 3.41
1917 3899 8.367156 ACCAACTGCATTGTAAATATTTGTCTT 58.633 29.630 11.05 0.00 36.47 3.01
1918 3900 9.206870 CCAACTGCATTGTAAATATTTGTCTTT 57.793 29.630 11.05 0.00 36.47 2.52
1937 3919 9.965824 TTGTCTTTTTAGAGATTTCAAATGGTC 57.034 29.630 0.00 0.00 0.00 4.02
1938 3920 9.130661 TGTCTTTTTAGAGATTTCAAATGGTCA 57.869 29.630 0.00 0.00 0.00 4.02
1939 3921 9.399403 GTCTTTTTAGAGATTTCAAATGGTCAC 57.601 33.333 0.00 0.00 0.00 3.67
1940 3922 8.576442 TCTTTTTAGAGATTTCAAATGGTCACC 58.424 33.333 0.00 0.00 0.00 4.02
1941 3923 7.831691 TTTTAGAGATTTCAAATGGTCACCA 57.168 32.000 0.00 0.00 38.19 4.17
1942 3924 6.817765 TTAGAGATTTCAAATGGTCACCAC 57.182 37.500 0.00 0.00 35.80 4.16
1943 3925 4.728772 AGAGATTTCAAATGGTCACCACA 58.271 39.130 0.00 0.00 35.80 4.17
1944 3926 5.327732 AGAGATTTCAAATGGTCACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
1945 3927 6.484288 AGAGATTTCAAATGGTCACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
1946 3928 7.121382 AGAGATTTCAAATGGTCACCACATAT 58.879 34.615 0.00 0.00 35.80 1.78
1947 3929 7.067859 AGAGATTTCAAATGGTCACCACATATG 59.932 37.037 0.00 0.00 35.80 1.78
1948 3930 6.891361 AGATTTCAAATGGTCACCACATATGA 59.109 34.615 10.38 0.00 35.80 2.15
1949 3931 6.907853 TTTCAAATGGTCACCACATATGAA 57.092 33.333 10.38 4.97 35.80 2.57
1950 3932 7.479352 TTTCAAATGGTCACCACATATGAAT 57.521 32.000 10.38 0.00 35.80 2.57
1951 3933 6.453926 TCAAATGGTCACCACATATGAATG 57.546 37.500 10.38 4.61 35.80 2.67
1953 3935 7.115414 TCAAATGGTCACCACATATGAATGTA 58.885 34.615 10.38 0.00 44.70 2.29
1954 3936 7.779326 TCAAATGGTCACCACATATGAATGTAT 59.221 33.333 10.38 0.05 44.70 2.29
1955 3937 9.065798 CAAATGGTCACCACATATGAATGTATA 57.934 33.333 10.38 0.00 44.70 1.47
1956 3938 9.812347 AAATGGTCACCACATATGAATGTATAT 57.188 29.630 10.38 0.00 44.70 0.86
1959 3941 9.320295 TGGTCACCACATATGAATGTATATAGA 57.680 33.333 10.38 0.00 44.70 1.98
1960 3942 9.587772 GGTCACCACATATGAATGTATATAGAC 57.412 37.037 10.38 6.37 44.70 2.59
1993 3975 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1994 3976 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1995 3977 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1996 3978 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1997 3979 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1998 3980 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1999 3981 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2000 3982 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2001 3983 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2002 3984 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2003 3985 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2004 3986 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2005 3987 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2006 3988 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2007 3989 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
2008 3990 1.842052 TGCTCCGTATGTAGTCACCA 58.158 50.000 0.00 0.00 0.00 4.17
2009 3991 2.384828 TGCTCCGTATGTAGTCACCAT 58.615 47.619 0.00 0.00 0.00 3.55
2010 3992 2.764010 TGCTCCGTATGTAGTCACCATT 59.236 45.455 0.00 0.00 0.00 3.16
2011 3993 3.196901 TGCTCCGTATGTAGTCACCATTT 59.803 43.478 0.00 0.00 0.00 2.32
2012 3994 3.555956 GCTCCGTATGTAGTCACCATTTG 59.444 47.826 0.00 0.00 0.00 2.32
2013 3995 4.679639 GCTCCGTATGTAGTCACCATTTGA 60.680 45.833 0.00 0.00 0.00 2.69
2014 3996 5.408880 TCCGTATGTAGTCACCATTTGAA 57.591 39.130 0.00 0.00 35.39 2.69
2015 3997 5.795972 TCCGTATGTAGTCACCATTTGAAA 58.204 37.500 0.00 0.00 35.39 2.69
2016 3998 5.640357 TCCGTATGTAGTCACCATTTGAAAC 59.360 40.000 0.00 0.00 35.39 2.78
2017 3999 5.163794 CCGTATGTAGTCACCATTTGAAACC 60.164 44.000 0.00 0.00 35.39 3.27
2018 4000 5.642063 CGTATGTAGTCACCATTTGAAACCT 59.358 40.000 0.00 0.00 35.39 3.50
2019 4001 6.183360 CGTATGTAGTCACCATTTGAAACCTC 60.183 42.308 0.00 0.00 35.39 3.85
2020 4002 5.304686 TGTAGTCACCATTTGAAACCTCT 57.695 39.130 0.00 0.00 35.39 3.69
2021 4003 6.428083 TGTAGTCACCATTTGAAACCTCTA 57.572 37.500 0.00 0.00 35.39 2.43
2022 4004 6.464222 TGTAGTCACCATTTGAAACCTCTAG 58.536 40.000 0.00 0.00 35.39 2.43
2023 4005 5.825593 AGTCACCATTTGAAACCTCTAGA 57.174 39.130 0.00 0.00 35.39 2.43
2024 4006 6.187727 AGTCACCATTTGAAACCTCTAGAA 57.812 37.500 0.00 0.00 35.39 2.10
2025 4007 6.601332 AGTCACCATTTGAAACCTCTAGAAA 58.399 36.000 0.00 0.00 35.39 2.52
2026 4008 6.712547 AGTCACCATTTGAAACCTCTAGAAAG 59.287 38.462 0.00 0.00 35.39 2.62
2027 4009 6.710744 GTCACCATTTGAAACCTCTAGAAAGA 59.289 38.462 0.00 0.00 35.39 2.52
2028 4010 6.710744 TCACCATTTGAAACCTCTAGAAAGAC 59.289 38.462 0.00 0.00 0.00 3.01
2029 4011 6.486657 CACCATTTGAAACCTCTAGAAAGACA 59.513 38.462 0.00 0.00 0.00 3.41
2030 4012 7.013274 CACCATTTGAAACCTCTAGAAAGACAA 59.987 37.037 0.00 0.00 0.00 3.18
2031 4013 7.559897 ACCATTTGAAACCTCTAGAAAGACAAA 59.440 33.333 0.00 4.41 0.00 2.83
2032 4014 8.579863 CCATTTGAAACCTCTAGAAAGACAAAT 58.420 33.333 13.64 13.64 36.38 2.32
2049 4031 9.807921 AAAGACAAATATTTAGAAACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
2050 4032 8.794335 AGACAAATATTTAGAAACAGAGGGAC 57.206 34.615 0.00 0.00 0.00 4.46
2052 4034 9.886132 GACAAATATTTAGAAACAGAGGGACTA 57.114 33.333 0.00 0.00 41.55 2.59
2058 4040 8.625467 ATTTAGAAACAGAGGGACTAATACCT 57.375 34.615 0.00 0.00 44.86 3.08
2059 4041 9.725206 ATTTAGAAACAGAGGGACTAATACCTA 57.275 33.333 0.00 0.00 40.52 3.08
2060 4042 9.725206 TTTAGAAACAGAGGGACTAATACCTAT 57.275 33.333 0.00 0.00 40.52 2.57
2061 4043 9.725206 TTAGAAACAGAGGGACTAATACCTATT 57.275 33.333 0.00 0.00 40.52 1.73
2062 4044 8.625467 AGAAACAGAGGGACTAATACCTATTT 57.375 34.615 0.00 0.00 40.52 1.40
2063 4045 9.059023 AGAAACAGAGGGACTAATACCTATTTT 57.941 33.333 0.00 0.00 40.52 1.82
2064 4046 9.110502 GAAACAGAGGGACTAATACCTATTTTG 57.889 37.037 0.00 0.00 40.52 2.44
2065 4047 7.138054 ACAGAGGGACTAATACCTATTTTGG 57.862 40.000 0.00 0.00 40.52 3.28
2066 4048 6.906901 ACAGAGGGACTAATACCTATTTTGGA 59.093 38.462 0.00 0.00 40.52 3.53
2067 4049 7.404980 ACAGAGGGACTAATACCTATTTTGGAA 59.595 37.037 0.00 0.00 40.52 3.53
2068 4050 7.715686 CAGAGGGACTAATACCTATTTTGGAAC 59.284 40.741 0.00 0.00 40.52 3.62
2069 4051 6.589135 AGGGACTAATACCTATTTTGGAACG 58.411 40.000 0.00 0.00 37.42 3.95
2070 4052 5.761726 GGGACTAATACCTATTTTGGAACGG 59.238 44.000 0.00 0.00 0.00 4.44
2071 4053 6.408434 GGGACTAATACCTATTTTGGAACGGA 60.408 42.308 0.00 0.00 0.00 4.69
2072 4054 6.704937 GGACTAATACCTATTTTGGAACGGAG 59.295 42.308 0.00 0.00 0.00 4.63
2073 4055 6.589135 ACTAATACCTATTTTGGAACGGAGG 58.411 40.000 0.00 0.00 0.00 4.30
2074 4056 2.801077 ACCTATTTTGGAACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
2075 4057 2.271777 ACCTATTTTGGAACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
2076 4058 2.238898 ACCTATTTTGGAACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2077 4059 2.238898 CCTATTTTGGAACGGAGGGAGT 59.761 50.000 0.00 0.00 0.00 3.85
2078 4060 3.453353 CCTATTTTGGAACGGAGGGAGTA 59.547 47.826 0.00 0.00 0.00 2.59
2079 4061 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2080 4062 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
2081 4063 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
2096 4078 3.775202 AGTACATCTGAAACTAGCTGCG 58.225 45.455 0.00 0.00 0.00 5.18
2099 4081 3.452474 ACATCTGAAACTAGCTGCGATC 58.548 45.455 0.00 0.00 0.00 3.69
2109 4091 0.251354 AGCTGCGATCACAGTGGATT 59.749 50.000 12.17 0.00 39.96 3.01
2178 4163 5.528320 AGTCGAGATTAGTCAGTTAGCCTAC 59.472 44.000 0.00 0.00 0.00 3.18
2197 4182 1.060713 CACCGAACTCAAGTACGCAG 58.939 55.000 0.00 0.00 0.00 5.18
2271 4265 2.289631 TGAGAAGCGACAACCACATCAT 60.290 45.455 0.00 0.00 0.00 2.45
2284 4278 1.655597 CACATCATCAGACGACAACCG 59.344 52.381 0.00 0.00 45.44 4.44
2289 4283 0.246360 ATCAGACGACAACCGCATCA 59.754 50.000 0.00 0.00 43.32 3.07
2317 4311 2.169832 ATCCCGTGTGTTCAACAGAG 57.830 50.000 0.00 0.00 40.26 3.35
2369 4387 6.636454 TGTGTCCTACTATTCCTCCAAAAT 57.364 37.500 0.00 0.00 0.00 1.82
2394 4412 9.656323 ATTAATTGTGTACTATAGTCCTCCAGA 57.344 33.333 9.12 0.00 0.00 3.86
2395 4413 6.963083 ATTGTGTACTATAGTCCTCCAGAC 57.037 41.667 9.12 0.78 46.71 3.51
2405 4423 3.914426 GTCCTCCAGACATAATGGTGT 57.086 47.619 0.00 0.00 45.55 4.16
2429 4447 1.006832 GCATGTCCATCCGTACACAC 58.993 55.000 0.00 0.00 0.00 3.82
2552 4587 0.821711 CAGAGGACTAGGGGAGAGCG 60.822 65.000 0.00 0.00 0.00 5.03
2558 4593 0.614979 ACTAGGGGAGAGCGCTGAAA 60.615 55.000 18.48 0.00 0.00 2.69
2587 4624 3.044305 GCACTGGACACCGTCTGC 61.044 66.667 0.00 0.00 32.47 4.26
2600 4637 2.523168 TCTGCGTGGGTCTGGTCA 60.523 61.111 0.00 0.00 0.00 4.02
2613 4650 1.008815 TCTGGTCAGATCCTGGGTCAT 59.991 52.381 10.10 0.00 31.41 3.06
2636 4673 2.661675 CGTGACAGTATCAGAACCAACG 59.338 50.000 0.00 0.00 38.28 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.701847 ACTCTTCTTGCATGTGGACCT 59.298 47.619 0.00 0.00 0.00 3.85
2 3 1.808945 CACTCTTCTTGCATGTGGACC 59.191 52.381 0.00 0.00 0.00 4.46
3 4 2.771089 TCACTCTTCTTGCATGTGGAC 58.229 47.619 0.00 0.00 0.00 4.02
4 5 3.490439 TTCACTCTTCTTGCATGTGGA 57.510 42.857 0.00 0.00 0.00 4.02
5 6 3.128242 GGATTCACTCTTCTTGCATGTGG 59.872 47.826 0.00 0.00 0.00 4.17
6 7 4.008330 AGGATTCACTCTTCTTGCATGTG 58.992 43.478 0.00 0.00 0.00 3.21
7 8 4.298103 AGGATTCACTCTTCTTGCATGT 57.702 40.909 0.00 0.00 0.00 3.21
8 9 5.220548 CGTTAGGATTCACTCTTCTTGCATG 60.221 44.000 0.00 0.00 0.00 4.06
9 10 4.872691 CGTTAGGATTCACTCTTCTTGCAT 59.127 41.667 0.00 0.00 0.00 3.96
10 11 4.021456 TCGTTAGGATTCACTCTTCTTGCA 60.021 41.667 0.00 0.00 0.00 4.08
11 12 4.327627 GTCGTTAGGATTCACTCTTCTTGC 59.672 45.833 0.00 0.00 0.00 4.01
12 13 5.470368 TGTCGTTAGGATTCACTCTTCTTG 58.530 41.667 0.00 0.00 0.00 3.02
13 14 5.723672 TGTCGTTAGGATTCACTCTTCTT 57.276 39.130 0.00 0.00 0.00 2.52
14 15 5.394663 CCATGTCGTTAGGATTCACTCTTCT 60.395 44.000 0.00 0.00 0.00 2.85
15 16 4.806247 CCATGTCGTTAGGATTCACTCTTC 59.194 45.833 0.00 0.00 0.00 2.87
16 17 4.759782 CCATGTCGTTAGGATTCACTCTT 58.240 43.478 0.00 0.00 0.00 2.85
17 18 3.430929 GCCATGTCGTTAGGATTCACTCT 60.431 47.826 0.00 0.00 0.00 3.24
18 19 2.866762 GCCATGTCGTTAGGATTCACTC 59.133 50.000 0.00 0.00 0.00 3.51
19 20 2.236146 TGCCATGTCGTTAGGATTCACT 59.764 45.455 0.00 0.00 0.00 3.41
20 21 2.351726 GTGCCATGTCGTTAGGATTCAC 59.648 50.000 0.00 0.00 0.00 3.18
21 22 2.027653 TGTGCCATGTCGTTAGGATTCA 60.028 45.455 0.00 0.00 0.00 2.57
22 23 2.627945 TGTGCCATGTCGTTAGGATTC 58.372 47.619 0.00 0.00 0.00 2.52
23 24 2.779755 TGTGCCATGTCGTTAGGATT 57.220 45.000 0.00 0.00 0.00 3.01
24 25 3.281727 AATGTGCCATGTCGTTAGGAT 57.718 42.857 0.00 0.00 0.00 3.24
25 26 2.779755 AATGTGCCATGTCGTTAGGA 57.220 45.000 0.00 0.00 0.00 2.94
26 27 5.499139 AATTAATGTGCCATGTCGTTAGG 57.501 39.130 0.00 0.00 0.00 2.69
27 28 7.754924 AGAAAAATTAATGTGCCATGTCGTTAG 59.245 33.333 0.00 0.00 0.00 2.34
28 29 7.598278 AGAAAAATTAATGTGCCATGTCGTTA 58.402 30.769 0.00 0.00 0.00 3.18
29 30 6.454795 AGAAAAATTAATGTGCCATGTCGTT 58.545 32.000 0.00 0.00 0.00 3.85
30 31 6.024552 AGAAAAATTAATGTGCCATGTCGT 57.975 33.333 0.00 0.00 0.00 4.34
31 32 6.252015 CAGAGAAAAATTAATGTGCCATGTCG 59.748 38.462 0.00 0.00 0.00 4.35
32 33 6.035327 GCAGAGAAAAATTAATGTGCCATGTC 59.965 38.462 0.00 0.00 0.00 3.06
33 34 5.870978 GCAGAGAAAAATTAATGTGCCATGT 59.129 36.000 0.00 0.00 0.00 3.21
34 35 5.870433 TGCAGAGAAAAATTAATGTGCCATG 59.130 36.000 0.00 0.00 0.00 3.66
35 36 6.040209 TGCAGAGAAAAATTAATGTGCCAT 57.960 33.333 0.00 0.00 0.00 4.40
36 37 5.465532 TGCAGAGAAAAATTAATGTGCCA 57.534 34.783 0.00 0.00 0.00 4.92
37 38 5.870978 ACATGCAGAGAAAAATTAATGTGCC 59.129 36.000 0.00 0.00 0.00 5.01
38 39 6.587226 TCACATGCAGAGAAAAATTAATGTGC 59.413 34.615 7.42 0.00 42.01 4.57
46 47 6.883217 ACTAGATGTCACATGCAGAGAAAAAT 59.117 34.615 0.00 0.00 0.00 1.82
47 48 6.233434 ACTAGATGTCACATGCAGAGAAAAA 58.767 36.000 0.00 0.00 0.00 1.94
85 86 6.703319 AGACCAATTTTCATTTGCATGATGA 58.297 32.000 8.70 8.70 39.28 2.92
99 100 7.301868 TCCATAAGCTTTTGAGACCAATTTT 57.698 32.000 17.31 0.00 31.46 1.82
103 104 7.118723 ACATATCCATAAGCTTTTGAGACCAA 58.881 34.615 17.31 4.67 0.00 3.67
106 107 7.792374 TGACATATCCATAAGCTTTTGAGAC 57.208 36.000 17.31 4.43 0.00 3.36
132 133 7.649705 CGTGTTAGTGATCTATGCTTAGTTCAT 59.350 37.037 18.25 12.15 36.83 2.57
137 138 4.681942 GCCGTGTTAGTGATCTATGCTTAG 59.318 45.833 0.14 0.14 0.00 2.18
138 139 4.098807 TGCCGTGTTAGTGATCTATGCTTA 59.901 41.667 0.00 0.00 0.00 3.09
143 144 4.888239 ACTACTGCCGTGTTAGTGATCTAT 59.112 41.667 0.00 0.00 0.00 1.98
189 195 1.898574 ACAAGCTTGCCGTTGGAGG 60.899 57.895 26.27 0.00 0.00 4.30
196 202 2.336088 CAACCCACAAGCTTGCCG 59.664 61.111 26.27 16.99 0.00 5.69
199 205 0.385390 GGTCACAACCCACAAGCTTG 59.615 55.000 24.84 24.84 39.93 4.01
200 206 1.101049 CGGTCACAACCCACAAGCTT 61.101 55.000 0.00 0.00 43.21 3.74
203 209 2.551912 GCCGGTCACAACCCACAAG 61.552 63.158 1.90 0.00 43.21 3.16
235 241 3.406595 GACGGGAGGGAAGCCATGG 62.407 68.421 7.63 7.63 0.00 3.66
239 245 2.138453 AAAAGGACGGGAGGGAAGCC 62.138 60.000 0.00 0.00 0.00 4.35
244 250 0.326927 TGCTAAAAAGGACGGGAGGG 59.673 55.000 0.00 0.00 0.00 4.30
296 307 8.706492 AACAATAATTCAAAGCACCATGTATG 57.294 30.769 0.00 0.00 0.00 2.39
299 310 7.714377 TGAAAACAATAATTCAAAGCACCATGT 59.286 29.630 0.00 0.00 32.89 3.21
301 312 7.933033 ACTGAAAACAATAATTCAAAGCACCAT 59.067 29.630 0.00 0.00 35.31 3.55
306 317 7.713764 ACCACTGAAAACAATAATTCAAAGC 57.286 32.000 0.00 0.00 35.31 3.51
325 336 7.972277 CCACGCGTATATAGATTATTTACCACT 59.028 37.037 13.44 0.00 0.00 4.00
329 340 8.186821 AGGACCACGCGTATATAGATTATTTAC 58.813 37.037 13.44 0.00 0.00 2.01
343 354 1.794151 TTGTTCGAGGACCACGCGTA 61.794 55.000 13.44 0.00 43.23 4.42
345 356 2.355363 TTGTTCGAGGACCACGCG 60.355 61.111 3.53 3.53 44.16 6.01
347 358 0.528901 TGTGTTGTTCGAGGACCACG 60.529 55.000 4.78 4.78 0.00 4.94
356 367 5.578336 AGACAGACATGATATGTGTTGTTCG 59.422 40.000 0.00 0.00 45.03 3.95
378 389 2.095461 CTTGAGATGTCCAGGACGAGA 58.905 52.381 15.24 0.00 34.95 4.04
382 393 1.902508 TCCACTTGAGATGTCCAGGAC 59.097 52.381 13.35 13.35 0.00 3.85
414 425 5.578727 CCGAGCTAGGTATGCTAATCATTTC 59.421 44.000 4.41 0.00 41.30 2.17
415 426 5.482908 CCGAGCTAGGTATGCTAATCATTT 58.517 41.667 4.41 0.00 41.30 2.32
419 430 2.494073 AGCCGAGCTAGGTATGCTAATC 59.506 50.000 14.88 0.00 41.30 1.75
425 436 1.683917 AGTCAAGCCGAGCTAGGTATG 59.316 52.381 14.88 13.13 38.25 2.39
428 439 0.977395 AAAGTCAAGCCGAGCTAGGT 59.023 50.000 14.88 0.00 38.25 3.08
439 450 3.548818 CGGTGGAGAAAAGCAAAGTCAAG 60.549 47.826 0.00 0.00 0.00 3.02
447 458 2.104111 TCTTCTTCGGTGGAGAAAAGCA 59.896 45.455 0.00 0.00 0.00 3.91
448 459 2.767505 TCTTCTTCGGTGGAGAAAAGC 58.232 47.619 0.00 0.00 0.00 3.51
467 478 2.032030 CGTTGCGATGGGGATATGTTTC 60.032 50.000 0.00 0.00 0.00 2.78
477 488 0.596082 AACCTTTTCGTTGCGATGGG 59.404 50.000 0.00 0.00 35.23 4.00
482 493 3.368495 AGCTTTTAACCTTTTCGTTGCG 58.632 40.909 0.00 0.00 0.00 4.85
503 514 2.217750 CGGGGACATCATTTTGCGATA 58.782 47.619 0.00 0.00 0.00 2.92
510 521 0.395724 GGAAGGCGGGGACATCATTT 60.396 55.000 0.00 0.00 0.00 2.32
528 539 0.040067 GAGACAAAAGTGCAAGCGGG 60.040 55.000 0.00 0.00 0.00 6.13
584 1278 3.545481 GATCCAGCACGACGCACG 61.545 66.667 0.00 1.21 46.13 5.34
587 1282 2.583593 GGAGATCCAGCACGACGC 60.584 66.667 0.00 0.00 42.91 5.19
665 1364 5.139435 TCCTATCTTGAAGTGTCACAGTG 57.861 43.478 5.62 0.00 31.90 3.66
671 2543 5.333513 CGTACACTCCTATCTTGAAGTGTC 58.666 45.833 10.01 3.08 40.39 3.67
767 2653 0.319986 GATTACTCCTGCTAGCCGCC 60.320 60.000 13.29 0.00 38.05 6.13
768 2654 0.319986 GGATTACTCCTGCTAGCCGC 60.320 60.000 13.29 0.00 38.65 6.53
769 2655 3.896317 GGATTACTCCTGCTAGCCG 57.104 57.895 13.29 5.57 38.65 5.52
835 2721 3.325753 GCCAGCCAGACCAGAGGT 61.326 66.667 0.00 0.00 39.44 3.85
836 2722 3.007920 AGCCAGCCAGACCAGAGG 61.008 66.667 0.00 0.00 0.00 3.69
842 2728 1.376553 GGAAGACAGCCAGCCAGAC 60.377 63.158 0.00 0.00 0.00 3.51
851 2737 6.708502 GGGATCTTTATAGAAAGGAAGACAGC 59.291 42.308 9.85 0.00 42.13 4.40
854 2740 7.496263 GTGTGGGATCTTTATAGAAAGGAAGAC 59.504 40.741 9.85 2.56 42.13 3.01
855 2741 7.565680 GTGTGGGATCTTTATAGAAAGGAAGA 58.434 38.462 9.85 0.00 42.13 2.87
898 2788 4.573201 TCACTTGTAAGTTGTAACTGTGGC 59.427 41.667 10.40 0.00 39.66 5.01
899 2789 6.046593 TCTCACTTGTAAGTTGTAACTGTGG 58.953 40.000 10.40 4.56 39.66 4.17
900 2790 6.201044 CCTCTCACTTGTAAGTTGTAACTGTG 59.799 42.308 0.00 2.54 39.66 3.66
901 2791 6.097839 TCCTCTCACTTGTAAGTTGTAACTGT 59.902 38.462 0.00 0.00 39.66 3.55
903 2793 6.550108 TCTCCTCTCACTTGTAAGTTGTAACT 59.450 38.462 0.00 0.00 42.04 2.24
904 2794 6.746120 TCTCCTCTCACTTGTAAGTTGTAAC 58.254 40.000 0.00 0.00 37.08 2.50
905 2795 6.971726 TCTCCTCTCACTTGTAAGTTGTAA 57.028 37.500 0.00 0.00 37.08 2.41
906 2796 6.127980 CGATCTCCTCTCACTTGTAAGTTGTA 60.128 42.308 0.00 0.00 37.08 2.41
907 2797 5.336055 CGATCTCCTCTCACTTGTAAGTTGT 60.336 44.000 0.00 0.00 37.08 3.32
908 2798 5.098893 CGATCTCCTCTCACTTGTAAGTTG 58.901 45.833 0.00 0.00 37.08 3.16
909 2799 4.767928 ACGATCTCCTCTCACTTGTAAGTT 59.232 41.667 0.00 0.00 37.08 2.66
910 2800 4.337145 ACGATCTCCTCTCACTTGTAAGT 58.663 43.478 0.00 0.00 40.60 2.24
925 2819 4.347813 CTTCTTCTTCTCCGAACGATCTC 58.652 47.826 0.00 0.00 0.00 2.75
926 2820 3.428316 GCTTCTTCTTCTCCGAACGATCT 60.428 47.826 0.00 0.00 0.00 2.75
928 2822 2.494073 AGCTTCTTCTTCTCCGAACGAT 59.506 45.455 0.00 0.00 0.00 3.73
929 2823 1.887198 AGCTTCTTCTTCTCCGAACGA 59.113 47.619 0.00 0.00 0.00 3.85
930 2824 2.255316 GAGCTTCTTCTTCTCCGAACG 58.745 52.381 0.00 0.00 0.00 3.95
932 2826 1.402984 GCGAGCTTCTTCTTCTCCGAA 60.403 52.381 0.00 0.00 0.00 4.30
933 2827 0.171455 GCGAGCTTCTTCTTCTCCGA 59.829 55.000 0.00 0.00 0.00 4.55
934 2828 0.804156 GGCGAGCTTCTTCTTCTCCG 60.804 60.000 0.00 0.00 0.00 4.63
935 2829 0.804156 CGGCGAGCTTCTTCTTCTCC 60.804 60.000 0.00 0.00 0.00 3.71
936 2830 0.109039 ACGGCGAGCTTCTTCTTCTC 60.109 55.000 16.62 0.00 0.00 2.87
984 2904 1.925959 TCCATCCCTCTCTCTCTGTCA 59.074 52.381 0.00 0.00 0.00 3.58
987 2907 2.309613 CAGTCCATCCCTCTCTCTCTG 58.690 57.143 0.00 0.00 0.00 3.35
998 2918 1.518572 CACGCGTACCAGTCCATCC 60.519 63.158 13.44 0.00 0.00 3.51
1054 3004 0.459237 CTGAAGAGCAGCCCGTACTG 60.459 60.000 0.00 0.00 37.90 2.74
1494 3459 4.093291 AGGCTGGCCTTCTGCGAG 62.093 66.667 8.50 0.00 45.70 5.03
1558 3523 3.213402 CTCCTCGTCCTCCTCGCC 61.213 72.222 0.00 0.00 0.00 5.54
1602 3567 0.975040 ACTTGATCTCGCTCTGGCCT 60.975 55.000 3.32 0.00 34.44 5.19
1606 3571 0.820226 TCCCACTTGATCTCGCTCTG 59.180 55.000 0.00 0.00 0.00 3.35
1689 3655 3.447586 CGAGGGAGTAAGAGGAAATGACA 59.552 47.826 0.00 0.00 0.00 3.58
1691 3657 3.031736 CCGAGGGAGTAAGAGGAAATGA 58.968 50.000 0.00 0.00 0.00 2.57
1703 3669 1.000612 GAGAAGGGACCGAGGGAGT 59.999 63.158 0.00 0.00 0.00 3.85
1704 3670 0.397816 ATGAGAAGGGACCGAGGGAG 60.398 60.000 0.00 0.00 0.00 4.30
1705 3671 0.687757 CATGAGAAGGGACCGAGGGA 60.688 60.000 0.00 0.00 0.00 4.20
1722 3689 9.442047 AGAAAAGAAAACAGTAATCTCGATCAT 57.558 29.630 0.00 0.00 0.00 2.45
1745 3716 0.966179 TCTCGCTAGCACACCAAGAA 59.034 50.000 16.45 0.00 0.00 2.52
1787 3758 5.985781 ACGCAGTCATTTTACAGTTTACAG 58.014 37.500 0.00 0.00 29.74 2.74
1788 3759 5.994887 ACGCAGTCATTTTACAGTTTACA 57.005 34.783 0.00 0.00 29.74 2.41
1789 3760 6.141685 CCAAACGCAGTCATTTTACAGTTTAC 59.858 38.462 0.00 0.00 45.00 2.01
1790 3761 6.038382 TCCAAACGCAGTCATTTTACAGTTTA 59.962 34.615 0.00 0.00 45.00 2.01
1791 3762 5.040635 CCAAACGCAGTCATTTTACAGTTT 58.959 37.500 0.00 0.00 45.00 2.66
1792 3763 4.336993 TCCAAACGCAGTCATTTTACAGTT 59.663 37.500 0.00 0.00 45.00 3.16
1793 3764 3.880490 TCCAAACGCAGTCATTTTACAGT 59.120 39.130 0.00 0.00 45.00 3.55
1805 3776 1.462283 CACTCATCACTCCAAACGCAG 59.538 52.381 0.00 0.00 0.00 5.18
1808 3779 3.653344 TCTTCACTCATCACTCCAAACG 58.347 45.455 0.00 0.00 0.00 3.60
1809 3780 5.240891 TGATCTTCACTCATCACTCCAAAC 58.759 41.667 0.00 0.00 0.00 2.93
1873 3852 4.312231 CTGTTGGTGTGGCGTGCG 62.312 66.667 0.00 0.00 0.00 5.34
1878 3857 0.751643 AGTTGGTCTGTTGGTGTGGC 60.752 55.000 0.00 0.00 0.00 5.01
1911 3893 9.965824 GACCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
1913 3895 9.399403 GTGACCATTTGAAATCTCTAAAAAGAC 57.601 33.333 0.00 0.00 0.00 3.01
1915 3897 8.359642 TGGTGACCATTTGAAATCTCTAAAAAG 58.640 33.333 0.00 0.00 0.00 2.27
1916 3898 8.141268 GTGGTGACCATTTGAAATCTCTAAAAA 58.859 33.333 7.94 0.00 35.28 1.94
1917 3899 7.286546 TGTGGTGACCATTTGAAATCTCTAAAA 59.713 33.333 7.94 0.00 35.28 1.52
1918 3900 6.775142 TGTGGTGACCATTTGAAATCTCTAAA 59.225 34.615 7.94 0.00 35.28 1.85
1919 3901 6.303054 TGTGGTGACCATTTGAAATCTCTAA 58.697 36.000 7.94 0.00 35.28 2.10
1920 3902 5.875224 TGTGGTGACCATTTGAAATCTCTA 58.125 37.500 7.94 0.00 35.28 2.43
1922 3904 5.649782 ATGTGGTGACCATTTGAAATCTC 57.350 39.130 7.94 0.00 35.28 2.75
1924 3906 7.099266 TCATATGTGGTGACCATTTGAAATC 57.901 36.000 7.94 0.00 35.28 2.17
1926 3908 6.907853 TTCATATGTGGTGACCATTTGAAA 57.092 33.333 7.94 0.00 36.75 2.69
1930 3912 9.812347 ATATACATTCATATGTGGTGACCATTT 57.188 29.630 7.94 0.45 44.56 2.32
1933 3915 9.320295 TCTATATACATTCATATGTGGTGACCA 57.680 33.333 0.00 0.00 44.56 4.02
1934 3916 9.587772 GTCTATATACATTCATATGTGGTGACC 57.412 37.037 1.90 0.00 44.56 4.02
1971 3953 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1972 3954 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1973 3955 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1974 3956 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1975 3957 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1976 3958 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1977 3959 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1978 3960 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1979 3961 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1980 3962 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1981 3963 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1982 3964 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1983 3965 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1984 3966 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
1985 3967 4.189231 GGTGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
1986 3968 3.007074 TGGTGACTACATACGGAGCAAAA 59.993 43.478 0.00 0.00 0.00 2.44
1987 3969 2.563620 TGGTGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 0.00 3.68
1988 3970 2.172679 TGGTGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 0.00 3.91
1989 3971 1.842052 TGGTGACTACATACGGAGCA 58.158 50.000 0.00 0.00 0.00 4.26
1990 3972 3.454371 AATGGTGACTACATACGGAGC 57.546 47.619 0.00 0.00 0.00 4.70
1991 3973 5.006153 TCAAATGGTGACTACATACGGAG 57.994 43.478 0.00 0.00 0.00 4.63
1992 3974 5.408880 TTCAAATGGTGACTACATACGGA 57.591 39.130 0.00 0.00 35.39 4.69
1993 3975 5.163794 GGTTTCAAATGGTGACTACATACGG 60.164 44.000 0.00 0.00 35.39 4.02
1994 3976 5.642063 AGGTTTCAAATGGTGACTACATACG 59.358 40.000 0.00 0.00 35.39 3.06
1995 3977 6.879458 AGAGGTTTCAAATGGTGACTACATAC 59.121 38.462 0.00 0.00 35.39 2.39
1996 3978 7.016153 AGAGGTTTCAAATGGTGACTACATA 57.984 36.000 0.00 0.00 35.39 2.29
1997 3979 5.880901 AGAGGTTTCAAATGGTGACTACAT 58.119 37.500 0.00 0.00 35.39 2.29
1998 3980 5.304686 AGAGGTTTCAAATGGTGACTACA 57.695 39.130 0.00 0.00 35.39 2.74
1999 3981 6.698380 TCTAGAGGTTTCAAATGGTGACTAC 58.302 40.000 0.00 0.00 35.39 2.73
2000 3982 6.928348 TCTAGAGGTTTCAAATGGTGACTA 57.072 37.500 0.00 0.00 35.39 2.59
2001 3983 5.825593 TCTAGAGGTTTCAAATGGTGACT 57.174 39.130 0.00 0.00 35.39 3.41
2002 3984 6.710744 TCTTTCTAGAGGTTTCAAATGGTGAC 59.289 38.462 0.00 0.00 35.39 3.67
2003 3985 6.710744 GTCTTTCTAGAGGTTTCAAATGGTGA 59.289 38.462 0.00 0.00 0.00 4.02
2004 3986 6.486657 TGTCTTTCTAGAGGTTTCAAATGGTG 59.513 38.462 0.00 0.00 0.00 4.17
2005 3987 6.601332 TGTCTTTCTAGAGGTTTCAAATGGT 58.399 36.000 0.00 0.00 0.00 3.55
2006 3988 7.510549 TTGTCTTTCTAGAGGTTTCAAATGG 57.489 36.000 0.00 0.00 0.00 3.16
2023 4005 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
2024 4006 9.232473 GTCCCTCTGTTTCTAAATATTTGTCTT 57.768 33.333 11.05 0.00 0.00 3.01
2025 4007 8.606830 AGTCCCTCTGTTTCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
2026 4008 8.794335 AGTCCCTCTGTTTCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
2032 4014 9.725206 AGGTATTAGTCCCTCTGTTTCTAAATA 57.275 33.333 0.00 0.00 0.00 1.40
2033 4015 8.625467 AGGTATTAGTCCCTCTGTTTCTAAAT 57.375 34.615 0.00 0.00 0.00 1.40
2034 4016 9.725206 ATAGGTATTAGTCCCTCTGTTTCTAAA 57.275 33.333 0.00 0.00 32.08 1.85
2035 4017 9.725206 AATAGGTATTAGTCCCTCTGTTTCTAA 57.275 33.333 0.00 0.00 32.08 2.10
2036 4018 9.725206 AAATAGGTATTAGTCCCTCTGTTTCTA 57.275 33.333 0.00 0.00 32.08 2.10
2037 4019 8.625467 AAATAGGTATTAGTCCCTCTGTTTCT 57.375 34.615 0.00 0.00 32.08 2.52
2038 4020 9.110502 CAAAATAGGTATTAGTCCCTCTGTTTC 57.889 37.037 0.00 0.00 32.08 2.78
2039 4021 8.053355 CCAAAATAGGTATTAGTCCCTCTGTTT 58.947 37.037 0.00 0.00 32.08 2.83
2040 4022 7.404980 TCCAAAATAGGTATTAGTCCCTCTGTT 59.595 37.037 0.00 0.00 32.08 3.16
2041 4023 6.906901 TCCAAAATAGGTATTAGTCCCTCTGT 59.093 38.462 0.00 0.00 32.08 3.41
2042 4024 7.374975 TCCAAAATAGGTATTAGTCCCTCTG 57.625 40.000 0.00 0.00 32.08 3.35
2043 4025 7.418712 CGTTCCAAAATAGGTATTAGTCCCTCT 60.419 40.741 0.00 0.00 32.08 3.69
2044 4026 6.704937 CGTTCCAAAATAGGTATTAGTCCCTC 59.295 42.308 0.00 0.00 32.08 4.30
2045 4027 6.408891 CCGTTCCAAAATAGGTATTAGTCCCT 60.409 42.308 0.00 0.00 34.74 4.20
2046 4028 5.761726 CCGTTCCAAAATAGGTATTAGTCCC 59.238 44.000 0.00 0.00 0.00 4.46
2047 4029 6.585416 TCCGTTCCAAAATAGGTATTAGTCC 58.415 40.000 0.00 0.00 0.00 3.85
2048 4030 6.704937 CCTCCGTTCCAAAATAGGTATTAGTC 59.295 42.308 0.00 0.00 0.00 2.59
2049 4031 6.408891 CCCTCCGTTCCAAAATAGGTATTAGT 60.409 42.308 0.00 0.00 0.00 2.24
2050 4032 5.995897 CCCTCCGTTCCAAAATAGGTATTAG 59.004 44.000 0.00 0.00 0.00 1.73
2051 4033 5.666718 TCCCTCCGTTCCAAAATAGGTATTA 59.333 40.000 0.00 0.00 0.00 0.98
2052 4034 4.475747 TCCCTCCGTTCCAAAATAGGTATT 59.524 41.667 0.00 0.00 0.00 1.89
2053 4035 4.042174 TCCCTCCGTTCCAAAATAGGTAT 58.958 43.478 0.00 0.00 0.00 2.73
2054 4036 3.452878 TCCCTCCGTTCCAAAATAGGTA 58.547 45.455 0.00 0.00 0.00 3.08
2055 4037 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
2056 4038 2.238898 ACTCCCTCCGTTCCAAAATAGG 59.761 50.000 0.00 0.00 0.00 2.57
2057 4039 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2058 4040 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
2059 4041 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
2060 4042 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
2061 4043 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2062 4044 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
2063 4045 1.006758 AGATGTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
2064 4046 1.409427 CAGATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
2065 4047 2.376109 TCAGATGTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
2066 4048 2.526888 TCAGATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
2067 4049 2.496470 GTTTCAGATGTACTCCCTCCGT 59.504 50.000 0.00 0.00 0.00 4.69
2068 4050 2.761208 AGTTTCAGATGTACTCCCTCCG 59.239 50.000 0.00 0.00 0.00 4.63
2069 4051 4.202172 GCTAGTTTCAGATGTACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
2070 4052 4.647399 AGCTAGTTTCAGATGTACTCCCTC 59.353 45.833 0.00 0.00 0.00 4.30
2071 4053 4.404073 CAGCTAGTTTCAGATGTACTCCCT 59.596 45.833 0.00 0.00 0.00 4.20
2072 4054 4.688021 CAGCTAGTTTCAGATGTACTCCC 58.312 47.826 0.00 0.00 0.00 4.30
2073 4055 4.116238 GCAGCTAGTTTCAGATGTACTCC 58.884 47.826 0.00 0.00 34.41 3.85
2074 4056 3.794028 CGCAGCTAGTTTCAGATGTACTC 59.206 47.826 0.00 0.00 34.41 2.59
2075 4057 3.444034 TCGCAGCTAGTTTCAGATGTACT 59.556 43.478 0.00 0.00 34.41 2.73
2076 4058 3.770666 TCGCAGCTAGTTTCAGATGTAC 58.229 45.455 0.00 0.00 34.41 2.90
2077 4059 4.097892 TGATCGCAGCTAGTTTCAGATGTA 59.902 41.667 0.00 0.00 34.41 2.29
2078 4060 3.118992 TGATCGCAGCTAGTTTCAGATGT 60.119 43.478 0.00 0.00 34.41 3.06
2079 4061 3.244814 GTGATCGCAGCTAGTTTCAGATG 59.755 47.826 0.16 0.00 35.03 2.90
2080 4062 3.118992 TGTGATCGCAGCTAGTTTCAGAT 60.119 43.478 4.45 0.00 0.00 2.90
2081 4063 2.231235 TGTGATCGCAGCTAGTTTCAGA 59.769 45.455 4.45 0.00 0.00 3.27
2096 4078 2.606725 CTGAAGCGAATCCACTGTGATC 59.393 50.000 9.86 3.95 0.00 2.92
2099 4081 1.998315 CTCTGAAGCGAATCCACTGTG 59.002 52.381 0.00 0.00 0.00 3.66
2109 4091 1.270826 CCTGTCTGAACTCTGAAGCGA 59.729 52.381 0.00 0.00 0.00 4.93
2167 4152 2.230508 TGAGTTCGGTGTAGGCTAACTG 59.769 50.000 2.97 6.18 30.83 3.16
2178 4163 1.060713 CTGCGTACTTGAGTTCGGTG 58.939 55.000 11.23 0.00 38.87 4.94
2197 4182 5.702622 AAAAAGAAGTTTTGCGCTCTTTC 57.297 34.783 17.18 10.32 38.04 2.62
2271 4265 0.032815 TTGATGCGGTTGTCGTCTGA 59.967 50.000 0.00 0.00 41.72 3.27
2284 4278 4.449068 CACACGGGATAGATAAGTTGATGC 59.551 45.833 0.00 0.00 0.00 3.91
2289 4283 5.670792 TGAACACACGGGATAGATAAGTT 57.329 39.130 0.00 0.00 0.00 2.66
2369 4387 8.910944 GTCTGGAGGACTATAGTACACAATTAA 58.089 37.037 17.56 0.36 41.46 1.40
2379 4397 6.495181 CACCATTATGTCTGGAGGACTATAGT 59.505 42.308 4.68 4.68 44.74 2.12
2380 4398 6.495181 ACACCATTATGTCTGGAGGACTATAG 59.505 42.308 0.00 0.00 44.74 1.31
2381 4399 6.382087 ACACCATTATGTCTGGAGGACTATA 58.618 40.000 0.00 0.00 44.74 1.31
2382 4400 5.219739 ACACCATTATGTCTGGAGGACTAT 58.780 41.667 0.00 0.00 44.74 2.12
2383 4401 4.620723 ACACCATTATGTCTGGAGGACTA 58.379 43.478 0.00 0.00 44.74 2.59
2384 4402 3.452627 GACACCATTATGTCTGGAGGACT 59.547 47.826 0.00 0.00 44.71 3.85
2385 4403 3.432326 GGACACCATTATGTCTGGAGGAC 60.432 52.174 5.92 0.00 46.85 3.85
2386 4404 2.771943 GGACACCATTATGTCTGGAGGA 59.228 50.000 5.92 0.00 46.85 3.71
2387 4405 2.774234 AGGACACCATTATGTCTGGAGG 59.226 50.000 5.92 0.00 46.85 4.30
2388 4406 4.194640 CAAGGACACCATTATGTCTGGAG 58.805 47.826 5.92 0.00 46.85 3.86
2389 4407 3.622206 GCAAGGACACCATTATGTCTGGA 60.622 47.826 5.92 0.00 46.85 3.86
2390 4408 2.684881 GCAAGGACACCATTATGTCTGG 59.315 50.000 5.92 0.00 46.85 3.86
2391 4409 3.346315 TGCAAGGACACCATTATGTCTG 58.654 45.455 5.92 0.00 46.85 3.51
2392 4410 3.719268 TGCAAGGACACCATTATGTCT 57.281 42.857 5.92 0.00 46.85 3.41
2393 4411 3.696051 ACATGCAAGGACACCATTATGTC 59.304 43.478 0.00 0.00 46.95 3.06
2394 4412 3.696051 GACATGCAAGGACACCATTATGT 59.304 43.478 0.00 0.00 34.78 2.29
2395 4413 3.067180 GGACATGCAAGGACACCATTATG 59.933 47.826 0.00 0.00 0.00 1.90
2396 4414 3.290710 GGACATGCAAGGACACCATTAT 58.709 45.455 0.00 0.00 0.00 1.28
2397 4415 2.040947 TGGACATGCAAGGACACCATTA 59.959 45.455 0.00 0.00 0.00 1.90
2398 4416 1.203038 TGGACATGCAAGGACACCATT 60.203 47.619 0.00 0.00 0.00 3.16
2399 4417 0.405198 TGGACATGCAAGGACACCAT 59.595 50.000 0.00 0.00 0.00 3.55
2400 4418 0.405198 ATGGACATGCAAGGACACCA 59.595 50.000 0.00 0.00 0.00 4.17
2401 4419 1.098050 GATGGACATGCAAGGACACC 58.902 55.000 0.00 0.00 0.00 4.16
2402 4420 1.098050 GGATGGACATGCAAGGACAC 58.902 55.000 0.00 0.00 0.00 3.67
2403 4421 0.392863 CGGATGGACATGCAAGGACA 60.393 55.000 4.72 0.00 0.00 4.02
2404 4422 0.392998 ACGGATGGACATGCAAGGAC 60.393 55.000 4.72 0.00 0.00 3.85
2405 4423 1.134521 GTACGGATGGACATGCAAGGA 60.135 52.381 4.72 0.00 0.00 3.36
2429 4447 1.566018 GGCTTTGACGTCCTTGTCCG 61.566 60.000 14.12 0.00 38.11 4.79
2477 4495 5.248020 CCAACTGATGGCTCTTAGATATCCT 59.752 44.000 0.00 0.00 43.80 3.24
2571 4608 2.734723 CGCAGACGGTGTCCAGTG 60.735 66.667 0.00 0.00 32.18 3.66
2587 4624 0.972983 AGGATCTGACCAGACCCACG 60.973 60.000 12.69 0.00 44.00 4.94
2600 4637 0.977627 TCACGCATGACCCAGGATCT 60.978 55.000 0.00 0.00 0.00 2.75
2613 4650 1.616374 TGGTTCTGATACTGTCACGCA 59.384 47.619 0.00 0.00 32.22 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.