Multiple sequence alignment - TraesCS7A01G514700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G514700 chr7A 100.000 2543 0 0 1 2543 700686328 700683786 0.000000e+00 4697.0
1 TraesCS7A01G514700 chr7B 89.251 521 38 11 995 1503 699524591 699524077 9.920000e-179 636.0
2 TraesCS7A01G514700 chr7B 88.528 523 38 15 995 1503 699562532 699562018 4.650000e-172 614.0
3 TraesCS7A01G514700 chr7B 87.078 503 48 9 1003 1503 699354569 699355056 1.030000e-153 553.0
4 TraesCS7A01G514700 chr7B 88.184 347 32 6 995 1335 699361952 699362295 3.050000e-109 405.0
5 TraesCS7A01G514700 chr7B 83.527 431 28 18 1578 1984 699362533 699362944 1.860000e-96 363.0
6 TraesCS7A01G514700 chr7B 91.943 211 11 3 1296 1503 699530705 699530498 8.900000e-75 291.0
7 TraesCS7A01G514700 chr7B 86.667 195 18 5 766 956 699562799 699562609 2.560000e-50 209.0
8 TraesCS7A01G514700 chr7B 95.775 71 3 0 921 991 699354435 699354505 5.750000e-22 115.0
9 TraesCS7A01G514700 chr7B 75.536 233 50 5 2312 2543 561733512 561733738 9.620000e-20 108.0
10 TraesCS7A01G514700 chr7B 82.812 128 13 5 1870 1989 699523680 699523554 3.460000e-19 106.0
11 TraesCS7A01G514700 chr7B 86.957 92 6 3 1491 1582 699362406 699362491 5.790000e-17 99.0
12 TraesCS7A01G514700 chr7B 77.778 180 18 13 1492 1649 699562002 699561823 9.690000e-15 91.6
13 TraesCS7A01G514700 chr7B 87.059 85 4 3 1498 1582 699530476 699530399 3.480000e-14 89.8
14 TraesCS7A01G514700 chr7B 88.525 61 5 2 1930 1989 699425913 699425854 3.510000e-09 73.1
15 TraesCS7A01G514700 chr7B 83.544 79 6 5 1579 1650 699530380 699530302 1.630000e-07 67.6
16 TraesCS7A01G514700 chr7D 85.464 571 62 11 1754 2310 610795943 610795380 2.190000e-160 575.0
17 TraesCS7A01G514700 chr7D 89.235 353 26 5 995 1338 610797396 610797047 5.030000e-117 431.0
18 TraesCS7A01G514700 chr7D 83.803 426 41 19 64 466 610798620 610798200 1.850000e-101 379.0
19 TraesCS7A01G514700 chr7D 90.566 159 10 2 1578 1736 610796804 610796651 3.320000e-49 206.0
20 TraesCS7A01G514700 chr7D 81.557 244 36 7 2069 2310 42060295 42060531 2.580000e-45 193.0
21 TraesCS7A01G514700 chr7D 77.682 233 46 5 2312 2543 461201818 461201591 1.230000e-28 137.0
22 TraesCS7A01G514700 chr7D 87.500 96 6 3 1491 1582 610796939 610796846 3.460000e-19 106.0
23 TraesCS7A01G514700 chr7D 80.583 103 17 3 2390 2491 80981093 80981193 2.710000e-10 76.8
24 TraesCS7A01G514700 chr7D 80.645 93 14 4 38 127 221983911 221984002 4.540000e-08 69.4
25 TraesCS7A01G514700 chr2A 82.490 514 72 10 997 1498 602718656 602718149 3.890000e-118 435.0
26 TraesCS7A01G514700 chr2A 82.398 517 70 8 997 1498 602766712 602766202 5.030000e-117 431.0
27 TraesCS7A01G514700 chr2A 81.923 520 70 12 997 1498 602688759 602688246 3.910000e-113 418.0
28 TraesCS7A01G514700 chr2A 76.147 218 50 2 2067 2282 726090246 726090029 2.070000e-21 113.0
29 TraesCS7A01G514700 chr2A 87.778 90 5 5 1491 1580 602688226 602688143 1.610000e-17 100.0
30 TraesCS7A01G514700 chr2A 98.214 56 1 0 1494 1549 602766179 602766124 5.790000e-17 99.0
31 TraesCS7A01G514700 chr2B 82.101 514 74 7 997 1498 540813710 540813203 8.410000e-115 424.0
32 TraesCS7A01G514700 chr2B 78.750 160 25 6 2364 2519 788142780 788142626 5.790000e-17 99.0
33 TraesCS7A01G514700 chr2B 93.220 59 4 0 1491 1549 540813183 540813125 1.250000e-13 87.9
34 TraesCS7A01G514700 chr2D 81.179 526 69 15 997 1498 459343999 459343480 1.830000e-106 396.0
35 TraesCS7A01G514700 chr4A 76.829 246 45 9 2067 2308 602098931 602098694 7.380000e-26 128.0
36 TraesCS7A01G514700 chr3B 78.710 155 28 5 2390 2542 425723331 425723482 5.790000e-17 99.0
37 TraesCS7A01G514700 chr5A 81.416 113 20 1 2431 2543 384618012 384618123 9.690000e-15 91.6
38 TraesCS7A01G514700 chr5D 79.389 131 22 4 2349 2478 505208174 505208048 1.250000e-13 87.9
39 TraesCS7A01G514700 chr6A 86.667 75 9 1 2418 2492 477415968 477415895 5.830000e-12 82.4
40 TraesCS7A01G514700 chr5B 78.992 119 17 6 2361 2478 506777947 506778058 9.760000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G514700 chr7A 700683786 700686328 2542 True 4697.000000 4697 100.000000 1 2543 1 chr7A.!!$R1 2542
1 TraesCS7A01G514700 chr7B 699523554 699524591 1037 True 371.000000 636 86.031500 995 1989 2 chr7B.!!$R2 994
2 TraesCS7A01G514700 chr7B 699354435 699355056 621 False 334.000000 553 91.426500 921 1503 2 chr7B.!!$F2 582
3 TraesCS7A01G514700 chr7B 699561823 699562799 976 True 304.866667 614 84.324333 766 1649 3 chr7B.!!$R4 883
4 TraesCS7A01G514700 chr7B 699361952 699362944 992 False 289.000000 405 86.222667 995 1984 3 chr7B.!!$F3 989
5 TraesCS7A01G514700 chr7D 610795380 610798620 3240 True 339.400000 575 87.313600 64 2310 5 chr7D.!!$R2 2246
6 TraesCS7A01G514700 chr2A 602718149 602718656 507 True 435.000000 435 82.490000 997 1498 1 chr2A.!!$R1 501
7 TraesCS7A01G514700 chr2A 602766124 602766712 588 True 265.000000 431 90.306000 997 1549 2 chr2A.!!$R4 552
8 TraesCS7A01G514700 chr2A 602688143 602688759 616 True 259.000000 418 84.850500 997 1580 2 chr2A.!!$R3 583
9 TraesCS7A01G514700 chr2B 540813125 540813710 585 True 255.950000 424 87.660500 997 1549 2 chr2B.!!$R2 552
10 TraesCS7A01G514700 chr2D 459343480 459343999 519 True 396.000000 396 81.179000 997 1498 1 chr2D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1281 0.250513 AGCCTCCAAGTCACGAATCC 59.749 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 3612 0.106708 GACAGTGTTCTGGAGCCACA 59.893 55.0 0.0 0.0 45.14 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 116 7.586747 AATTAGTGAATTTTTGCAAATGCAGG 58.413 30.769 13.65 0.00 41.28 4.85
132 135 4.268405 GCAGGAACATTTTCAAATATGCGG 59.732 41.667 0.00 0.00 32.80 5.69
133 136 5.649557 CAGGAACATTTTCAAATATGCGGA 58.350 37.500 0.00 0.00 32.80 5.54
138 141 8.450180 GGAACATTTTCAAATATGCGGATTTTT 58.550 29.630 0.00 0.00 32.80 1.94
162 165 9.874205 TTTTTATAATTCATGGGCTCTTTTCAG 57.126 29.630 0.00 0.00 0.00 3.02
177 180 6.256321 GCTCTTTTCAGTTCAGCAAATTTTCA 59.744 34.615 0.00 0.00 0.00 2.69
184 187 9.598517 TTCAGTTCAGCAAATTTTCAAAACTAT 57.401 25.926 7.26 0.00 0.00 2.12
216 219 9.151471 CATTTCGTTTTCTCTTCTATACAAGGA 57.849 33.333 0.00 0.00 0.00 3.36
223 226 5.273208 TCTCTTCTATACAAGGAACCAGCT 58.727 41.667 0.00 0.00 0.00 4.24
224 227 6.432581 TCTCTTCTATACAAGGAACCAGCTA 58.567 40.000 0.00 0.00 0.00 3.32
233 257 0.796927 GGAACCAGCTAACGACAAGC 59.203 55.000 0.00 0.00 40.40 4.01
234 258 1.508632 GAACCAGCTAACGACAAGCA 58.491 50.000 10.17 0.00 42.62 3.91
240 264 2.543848 CAGCTAACGACAAGCAAACAGA 59.456 45.455 10.17 0.00 42.62 3.41
241 265 3.002246 CAGCTAACGACAAGCAAACAGAA 59.998 43.478 10.17 0.00 42.62 3.02
277 301 3.287867 AGGATGGTTGATTGAGCGAAT 57.712 42.857 0.00 0.00 0.00 3.34
279 303 2.033801 GGATGGTTGATTGAGCGAATGG 59.966 50.000 0.00 0.00 0.00 3.16
281 305 0.740737 GGTTGATTGAGCGAATGGGG 59.259 55.000 0.00 0.00 0.00 4.96
339 363 1.601759 ATGCACTGTTTCAGCGCCT 60.602 52.632 2.29 0.00 38.58 5.52
341 365 0.533978 TGCACTGTTTCAGCGCCTTA 60.534 50.000 2.29 0.00 38.58 2.69
345 369 1.266989 ACTGTTTCAGCGCCTTAAAGC 59.733 47.619 2.29 0.00 34.37 3.51
369 393 1.001158 GATTAGGAGGTCTCTTCCGCG 60.001 57.143 0.00 0.00 0.00 6.46
372 396 2.341101 GGAGGTCTCTTCCGCGTCA 61.341 63.158 4.92 0.00 0.00 4.35
383 407 2.971660 TCCGCGTCATTTCCTATTCA 57.028 45.000 4.92 0.00 0.00 2.57
387 411 2.794910 CGCGTCATTTCCTATTCATCGT 59.205 45.455 0.00 0.00 0.00 3.73
394 418 3.861276 TTCCTATTCATCGTGTCACGT 57.139 42.857 23.82 9.63 43.14 4.49
395 419 3.145212 TCCTATTCATCGTGTCACGTG 57.855 47.619 23.82 19.76 43.14 4.49
405 429 1.076533 GTGTCACGTGCGGTGGATAG 61.077 60.000 11.67 0.00 46.96 2.08
443 467 3.582120 CACCGCACGCAACTTGGT 61.582 61.111 0.00 0.00 0.00 3.67
446 470 2.249309 CGCACGCAACTTGGTCTG 59.751 61.111 0.00 0.00 0.00 3.51
448 472 2.639286 CACGCAACTTGGTCTGGC 59.361 61.111 0.00 0.00 0.00 4.85
488 757 2.693591 TGTGTCTCTCTTCGACTGGTTT 59.306 45.455 0.00 0.00 32.70 3.27
509 778 6.702329 GTTTTAGAACCTCTCCAGATCAAGA 58.298 40.000 0.00 0.00 0.00 3.02
510 779 6.935240 TTTAGAACCTCTCCAGATCAAGAA 57.065 37.500 0.00 0.00 0.00 2.52
512 781 8.609617 TTTAGAACCTCTCCAGATCAAGAATA 57.390 34.615 0.00 0.00 0.00 1.75
513 782 6.478512 AGAACCTCTCCAGATCAAGAATAC 57.521 41.667 0.00 0.00 0.00 1.89
515 784 3.970640 ACCTCTCCAGATCAAGAATACCC 59.029 47.826 0.00 0.00 0.00 3.69
516 785 3.969976 CCTCTCCAGATCAAGAATACCCA 59.030 47.826 0.00 0.00 0.00 4.51
518 787 5.512749 CCTCTCCAGATCAAGAATACCCATG 60.513 48.000 0.00 0.00 0.00 3.66
520 789 3.459227 TCCAGATCAAGAATACCCATGCA 59.541 43.478 0.00 0.00 0.00 3.96
521 790 4.105217 TCCAGATCAAGAATACCCATGCAT 59.895 41.667 0.00 0.00 0.00 3.96
523 792 5.048224 CCAGATCAAGAATACCCATGCATTC 60.048 44.000 0.00 0.00 0.00 2.67
524 793 4.758674 AGATCAAGAATACCCATGCATTCG 59.241 41.667 0.00 0.00 36.48 3.34
525 794 2.618241 TCAAGAATACCCATGCATTCGC 59.382 45.455 0.00 0.00 36.48 4.70
526 795 1.609208 AGAATACCCATGCATTCGCC 58.391 50.000 0.00 0.00 36.48 5.54
528 797 2.371841 AGAATACCCATGCATTCGCCTA 59.628 45.455 0.00 0.00 36.48 3.93
529 798 2.949177 ATACCCATGCATTCGCCTAA 57.051 45.000 0.00 0.00 37.32 2.69
530 799 1.961793 TACCCATGCATTCGCCTAAC 58.038 50.000 0.00 0.00 37.32 2.34
531 800 0.751643 ACCCATGCATTCGCCTAACC 60.752 55.000 0.00 0.00 37.32 2.85
532 801 1.455383 CCCATGCATTCGCCTAACCC 61.455 60.000 0.00 0.00 37.32 4.11
533 802 0.751277 CCATGCATTCGCCTAACCCA 60.751 55.000 0.00 0.00 37.32 4.51
534 803 0.664761 CATGCATTCGCCTAACCCAG 59.335 55.000 0.00 0.00 37.32 4.45
536 805 1.823899 GCATTCGCCTAACCCAGGG 60.824 63.158 2.85 2.85 45.66 4.45
537 806 1.607612 CATTCGCCTAACCCAGGGT 59.392 57.895 4.76 4.76 45.66 4.34
539 808 0.702316 ATTCGCCTAACCCAGGGTTT 59.298 50.000 29.73 13.36 44.33 3.27
540 809 0.479378 TTCGCCTAACCCAGGGTTTT 59.521 50.000 29.73 8.83 44.33 2.43
541 810 0.479378 TCGCCTAACCCAGGGTTTTT 59.521 50.000 29.73 7.99 44.33 1.94
542 811 0.885879 CGCCTAACCCAGGGTTTTTC 59.114 55.000 29.73 16.13 44.33 2.29
543 812 1.263356 GCCTAACCCAGGGTTTTTCC 58.737 55.000 29.73 11.63 44.33 3.13
544 813 1.541379 CCTAACCCAGGGTTTTTCCG 58.459 55.000 29.73 12.24 44.33 4.30
563 832 3.002553 TCCGACCAGCTTTTTACGTTTTC 59.997 43.478 0.00 0.00 0.00 2.29
565 834 4.211794 CCGACCAGCTTTTTACGTTTTCTA 59.788 41.667 0.00 0.00 0.00 2.10
566 835 5.106830 CCGACCAGCTTTTTACGTTTTCTAT 60.107 40.000 0.00 0.00 0.00 1.98
569 838 7.844653 CGACCAGCTTTTTACGTTTTCTATATC 59.155 37.037 0.00 0.00 0.00 1.63
571 840 9.227777 ACCAGCTTTTTACGTTTTCTATATCTT 57.772 29.630 0.00 0.00 0.00 2.40
623 892 9.904647 AAATTCATGAATATTTTTGATTTCGCG 57.095 25.926 21.00 0.00 0.00 5.87
624 893 7.448588 TTCATGAATATTTTTGATTTCGCGG 57.551 32.000 6.13 0.00 0.00 6.46
628 897 5.458452 TGAATATTTTTGATTTCGCGGATGC 59.542 36.000 6.13 0.00 37.91 3.91
645 914 0.970640 TGCTTTTCATGCATGTGCCT 59.029 45.000 25.43 0.00 41.18 4.75
654 923 3.027170 GCATGTGCCTTCGTGTCCG 62.027 63.158 0.00 0.00 34.31 4.79
672 941 2.124942 TGCGTGTGCCTTGTGACA 60.125 55.556 0.00 0.00 41.78 3.58
681 950 3.820467 TGTGCCTTGTGACAGAAAATAGG 59.180 43.478 0.00 0.00 0.00 2.57
694 963 9.513906 TGACAGAAAATAGGATACAACATTTGA 57.486 29.630 0.00 0.00 41.41 2.69
703 972 9.699410 ATAGGATACAACATTTGAAAATGGAGA 57.301 29.630 17.61 3.49 44.62 3.71
704 973 8.059798 AGGATACAACATTTGAAAATGGAGAG 57.940 34.615 17.61 8.38 44.62 3.20
705 974 7.671398 AGGATACAACATTTGAAAATGGAGAGT 59.329 33.333 17.61 12.48 44.62 3.24
724 993 2.762327 AGTTTCCATGCATGATTCCCAC 59.238 45.455 28.31 14.17 0.00 4.61
725 994 1.391577 TTCCATGCATGATTCCCACG 58.608 50.000 28.31 8.56 0.00 4.94
730 999 2.721274 TGCATGATTCCCACGTTTTG 57.279 45.000 0.00 0.00 0.00 2.44
731 1000 1.271934 TGCATGATTCCCACGTTTTGG 59.728 47.619 0.00 0.00 46.47 3.28
751 1029 2.483013 GGTGCCAAGCTATCATCACGTA 60.483 50.000 0.00 0.00 0.00 3.57
755 1033 3.243569 GCCAAGCTATCATCACGTACTCT 60.244 47.826 0.00 0.00 0.00 3.24
784 1065 1.971695 CACCGGAACTTGAAGCCCC 60.972 63.158 9.46 0.00 0.00 5.80
836 1117 3.304928 CGTTAGTAGGTTGTGTCCGAGTT 60.305 47.826 0.00 0.00 0.00 3.01
883 1164 2.501610 GGAGCCAGCCCTAGTTCG 59.498 66.667 0.00 0.00 0.00 3.95
888 1169 2.732619 CCAGCCCTAGTTCGTCCCC 61.733 68.421 0.00 0.00 0.00 4.81
892 1173 0.463204 GCCCTAGTTCGTCCCCTAAC 59.537 60.000 0.00 0.00 0.00 2.34
893 1174 1.963857 GCCCTAGTTCGTCCCCTAACT 60.964 57.143 0.00 0.00 39.25 2.24
895 1176 3.635591 CCCTAGTTCGTCCCCTAACTAA 58.364 50.000 0.00 0.00 37.65 2.24
898 1179 6.015282 CCCTAGTTCGTCCCCTAACTAATAT 58.985 44.000 0.00 0.00 37.65 1.28
899 1180 6.152492 CCCTAGTTCGTCCCCTAACTAATATC 59.848 46.154 0.00 0.00 37.65 1.63
902 1183 7.757941 AGTTCGTCCCCTAACTAATATCTAC 57.242 40.000 0.00 0.00 34.23 2.59
903 1184 6.718912 AGTTCGTCCCCTAACTAATATCTACC 59.281 42.308 0.00 0.00 34.23 3.18
904 1185 5.248640 TCGTCCCCTAACTAATATCTACCG 58.751 45.833 0.00 0.00 0.00 4.02
928 1211 6.363626 CGTATCTAATTGGACTCGGATTGAAG 59.636 42.308 0.00 0.00 0.00 3.02
957 1245 5.051641 GCGCGTCAATCAAGCTATATATACC 60.052 44.000 8.43 0.00 0.00 2.73
993 1281 0.250513 AGCCTCCAAGTCACGAATCC 59.749 55.000 0.00 0.00 0.00 3.01
1138 1493 1.961277 AAGCACAAGAAGACGGCGG 60.961 57.895 13.24 0.00 0.00 6.13
1170 1525 5.059833 GCCAGTCTTACCAAGGATCTATTG 58.940 45.833 0.00 0.00 0.00 1.90
1229 1584 2.675348 GGAAAAATCAGCTGGAGAGACG 59.325 50.000 15.13 0.00 0.00 4.18
1274 1659 0.598065 GCAAGGGCAAAGACGAACAT 59.402 50.000 0.00 0.00 40.72 2.71
1352 1737 2.955022 GATGGAGCAAGGCGAGGCAT 62.955 60.000 0.00 0.00 0.00 4.40
1353 1738 2.899339 GGAGCAAGGCGAGGCATC 60.899 66.667 0.00 0.00 0.00 3.91
1354 1739 2.124983 GAGCAAGGCGAGGCATCA 60.125 61.111 0.00 0.00 0.00 3.07
1361 1755 0.678395 AGGCGAGGCATCAGATACAG 59.322 55.000 0.00 0.00 0.00 2.74
1422 1819 3.376546 GGCATGCCGGGAAAGTTT 58.623 55.556 23.48 0.00 0.00 2.66
1442 1839 2.607134 AGCTCCACAGAGGCAGCT 60.607 61.111 5.42 5.42 40.79 4.24
1551 1984 3.489180 TCGTTGAAGTAGTGCTAGCTC 57.511 47.619 17.23 12.88 0.00 4.09
1552 1985 3.082548 TCGTTGAAGTAGTGCTAGCTCT 58.917 45.455 21.91 21.91 0.00 4.09
1554 1987 4.333095 TCGTTGAAGTAGTGCTAGCTCTAG 59.667 45.833 23.32 12.08 36.29 2.43
1582 2063 5.886960 AGCTGTCCTTCAACATATTTGTC 57.113 39.130 0.00 0.00 34.06 3.18
1724 2215 7.502120 TCAATGGCTAAATTAGAGCAGAATC 57.498 36.000 3.88 0.00 41.98 2.52
1737 2228 6.956202 AGAGCAGAATCATGGATAAAAAGG 57.044 37.500 0.00 0.00 0.00 3.11
1738 2229 6.430007 AGAGCAGAATCATGGATAAAAAGGT 58.570 36.000 0.00 0.00 0.00 3.50
1739 2230 7.577303 AGAGCAGAATCATGGATAAAAAGGTA 58.423 34.615 0.00 0.00 0.00 3.08
1742 2923 8.470002 AGCAGAATCATGGATAAAAAGGTAAAC 58.530 33.333 0.00 0.00 0.00 2.01
1880 3073 6.444633 ACTCTGAAAAGACAAATCTTGCATG 58.555 36.000 0.00 0.00 44.82 4.06
1891 3084 8.031277 AGACAAATCTTGCATGGATTTTTACTC 58.969 33.333 19.09 13.33 40.18 2.59
1909 3102 7.582667 TTTACTCCAGAATACAGATCGATGA 57.417 36.000 0.54 0.00 0.00 2.92
1911 3104 6.023357 ACTCCAGAATACAGATCGATGATG 57.977 41.667 0.54 3.94 0.00 3.07
1967 3167 4.023536 GGTCGACTGAAAAATAGCAAACCA 60.024 41.667 16.46 0.00 0.00 3.67
2002 3208 9.696917 AACAATTCAGTATCTCCAAAACAAATC 57.303 29.630 0.00 0.00 0.00 2.17
2019 3226 8.932945 AAACAAATCAGAGTTCCTTTCTTTTC 57.067 30.769 0.00 0.00 0.00 2.29
2027 3234 9.681062 TCAGAGTTCCTTTCTTTTCTTTTCTTA 57.319 29.630 0.00 0.00 0.00 2.10
2096 3306 0.752009 TCCTTCCCTCGATCTCCACG 60.752 60.000 0.00 0.00 0.00 4.94
2115 3325 2.820037 GCTAGCCCGTGGACTTGC 60.820 66.667 2.29 0.00 0.00 4.01
2123 3334 2.286523 CGTGGACTTGCCTCCCTCT 61.287 63.158 0.00 0.00 37.63 3.69
2127 3338 2.204059 ACTTGCCTCCCTCTGCCT 60.204 61.111 0.00 0.00 0.00 4.75
2136 3347 4.834453 CCTCTGCCTGCTGCTCCG 62.834 72.222 0.00 0.00 42.00 4.63
2137 3348 4.834453 CTCTGCCTGCTGCTCCGG 62.834 72.222 0.00 0.00 42.00 5.14
2159 3370 2.043248 TGGTAGCGGAGAGGGGAC 60.043 66.667 0.00 0.00 0.00 4.46
2177 3388 1.070758 GACTTCTGGTGCCTTGTCTCA 59.929 52.381 0.00 0.00 0.00 3.27
2199 3410 5.837438 TCAGGCTAGTAAATAGGTAGGGTTC 59.163 44.000 0.00 0.00 31.55 3.62
2207 3418 8.765488 AGTAAATAGGTAGGGTTCTAGTTCTC 57.235 38.462 0.00 0.00 0.00 2.87
2253 3465 3.539431 GACACTTCTTCTTCGAGTCGA 57.461 47.619 12.09 12.09 0.00 4.20
2258 3470 4.791163 CACTTCTTCTTCGAGTCGATCTTC 59.209 45.833 17.34 0.00 35.23 2.87
2259 3471 4.698304 ACTTCTTCTTCGAGTCGATCTTCT 59.302 41.667 17.34 0.00 35.23 2.85
2271 3483 1.043816 GATCTTCTGGGCTCCGATCA 58.956 55.000 0.00 0.00 32.75 2.92
2286 3498 2.939103 CCGATCATCCTCAAGTTTGTCC 59.061 50.000 0.00 0.00 0.00 4.02
2287 3499 3.599343 CGATCATCCTCAAGTTTGTCCA 58.401 45.455 0.00 0.00 0.00 4.02
2290 3502 5.624509 CGATCATCCTCAAGTTTGTCCACTA 60.625 44.000 0.00 0.00 0.00 2.74
2304 3516 2.679082 TCCACTAGGACAGATAAGGCC 58.321 52.381 0.00 0.00 39.61 5.19
2310 3522 1.133450 AGGACAGATAAGGCCGAGCTA 60.133 52.381 0.00 0.00 0.00 3.32
2311 3523 1.687123 GGACAGATAAGGCCGAGCTAA 59.313 52.381 0.00 0.00 0.00 3.09
2312 3524 2.288518 GGACAGATAAGGCCGAGCTAAG 60.289 54.545 0.00 0.00 0.00 2.18
2313 3525 1.689273 ACAGATAAGGCCGAGCTAAGG 59.311 52.381 0.00 3.45 0.00 2.69
2314 3526 1.689273 CAGATAAGGCCGAGCTAAGGT 59.311 52.381 9.20 0.00 0.00 3.50
2315 3527 2.103263 CAGATAAGGCCGAGCTAAGGTT 59.897 50.000 9.20 0.39 0.00 3.50
2316 3528 3.321111 CAGATAAGGCCGAGCTAAGGTTA 59.679 47.826 9.20 2.39 0.00 2.85
2317 3529 3.965347 AGATAAGGCCGAGCTAAGGTTAA 59.035 43.478 9.20 0.00 0.00 2.01
2318 3530 2.693267 AAGGCCGAGCTAAGGTTAAG 57.307 50.000 9.20 0.00 0.00 1.85
2319 3531 0.831307 AGGCCGAGCTAAGGTTAAGG 59.169 55.000 9.20 0.00 0.00 2.69
2320 3532 0.540454 GGCCGAGCTAAGGTTAAGGT 59.460 55.000 9.20 0.00 0.00 3.50
2321 3533 1.065636 GGCCGAGCTAAGGTTAAGGTT 60.066 52.381 9.20 0.00 0.00 3.50
2322 3534 2.617276 GGCCGAGCTAAGGTTAAGGTTT 60.617 50.000 9.20 0.00 0.00 3.27
2323 3535 2.676839 GCCGAGCTAAGGTTAAGGTTTC 59.323 50.000 9.20 0.00 0.00 2.78
2324 3536 3.619242 GCCGAGCTAAGGTTAAGGTTTCT 60.619 47.826 9.20 0.00 0.00 2.52
2325 3537 4.182339 CCGAGCTAAGGTTAAGGTTTCTC 58.818 47.826 0.00 0.00 0.00 2.87
2326 3538 3.858238 CGAGCTAAGGTTAAGGTTTCTCG 59.142 47.826 0.00 0.00 35.67 4.04
2327 3539 3.597255 AGCTAAGGTTAAGGTTTCTCGC 58.403 45.455 0.00 0.00 0.00 5.03
2328 3540 2.676839 GCTAAGGTTAAGGTTTCTCGCC 59.323 50.000 0.00 0.00 0.00 5.54
2329 3541 1.804601 AAGGTTAAGGTTTCTCGCCG 58.195 50.000 0.00 0.00 0.00 6.46
2330 3542 0.683412 AGGTTAAGGTTTCTCGCCGT 59.317 50.000 0.00 0.00 0.00 5.68
2331 3543 1.895131 AGGTTAAGGTTTCTCGCCGTA 59.105 47.619 0.00 0.00 0.00 4.02
2332 3544 1.995484 GGTTAAGGTTTCTCGCCGTAC 59.005 52.381 0.00 0.00 0.00 3.67
2333 3545 1.650645 GTTAAGGTTTCTCGCCGTACG 59.349 52.381 8.69 8.69 45.62 3.67
2334 3546 0.881118 TAAGGTTTCTCGCCGTACGT 59.119 50.000 15.21 0.00 44.19 3.57
2335 3547 0.881118 AAGGTTTCTCGCCGTACGTA 59.119 50.000 15.21 0.00 44.19 3.57
2336 3548 1.098050 AGGTTTCTCGCCGTACGTAT 58.902 50.000 15.21 0.00 44.19 3.06
2337 3549 1.194495 GGTTTCTCGCCGTACGTATG 58.806 55.000 15.21 7.87 44.19 2.39
2338 3550 0.569349 GTTTCTCGCCGTACGTATGC 59.431 55.000 15.21 9.68 44.19 3.14
2339 3551 0.170784 TTTCTCGCCGTACGTATGCA 59.829 50.000 15.21 0.00 44.19 3.96
2340 3552 0.248336 TTCTCGCCGTACGTATGCAG 60.248 55.000 15.21 10.36 44.19 4.41
2341 3553 1.063649 CTCGCCGTACGTATGCAGT 59.936 57.895 15.21 0.00 44.19 4.40
2342 3554 1.200474 CTCGCCGTACGTATGCAGTG 61.200 60.000 15.21 4.37 44.19 3.66
2343 3555 2.228241 CGCCGTACGTATGCAGTGG 61.228 63.158 15.21 6.69 36.87 4.00
2344 3556 2.522638 GCCGTACGTATGCAGTGGC 61.523 63.158 15.21 7.55 41.68 5.01
2345 3557 1.881252 CCGTACGTATGCAGTGGCC 60.881 63.158 15.21 0.00 40.13 5.36
2346 3558 1.153726 CGTACGTATGCAGTGGCCA 60.154 57.895 0.00 0.00 40.13 5.36
2347 3559 0.529773 CGTACGTATGCAGTGGCCAT 60.530 55.000 9.72 0.00 40.13 4.40
2348 3560 1.269361 CGTACGTATGCAGTGGCCATA 60.269 52.381 9.72 0.00 40.13 2.74
2349 3561 2.609491 CGTACGTATGCAGTGGCCATAT 60.609 50.000 9.72 4.27 40.13 1.78
2350 3562 2.638480 ACGTATGCAGTGGCCATATT 57.362 45.000 9.72 0.00 40.13 1.28
2351 3563 2.930950 ACGTATGCAGTGGCCATATTT 58.069 42.857 9.72 0.00 40.13 1.40
2352 3564 2.618241 ACGTATGCAGTGGCCATATTTG 59.382 45.455 9.72 6.94 40.13 2.32
2353 3565 2.877786 CGTATGCAGTGGCCATATTTGA 59.122 45.455 9.72 0.00 40.13 2.69
2354 3566 3.503363 CGTATGCAGTGGCCATATTTGAT 59.497 43.478 9.72 0.00 40.13 2.57
2355 3567 4.614306 CGTATGCAGTGGCCATATTTGATG 60.614 45.833 9.72 0.68 40.13 3.07
2356 3568 2.737544 TGCAGTGGCCATATTTGATGT 58.262 42.857 9.72 0.00 40.13 3.06
2357 3569 2.689471 TGCAGTGGCCATATTTGATGTC 59.311 45.455 9.72 0.00 40.13 3.06
2358 3570 2.954318 GCAGTGGCCATATTTGATGTCT 59.046 45.455 9.72 0.00 0.00 3.41
2359 3571 4.136796 GCAGTGGCCATATTTGATGTCTA 58.863 43.478 9.72 0.00 0.00 2.59
2360 3572 4.580167 GCAGTGGCCATATTTGATGTCTAA 59.420 41.667 9.72 0.00 0.00 2.10
2361 3573 5.242393 GCAGTGGCCATATTTGATGTCTAAT 59.758 40.000 9.72 0.00 0.00 1.73
2362 3574 6.239120 GCAGTGGCCATATTTGATGTCTAATT 60.239 38.462 9.72 0.00 0.00 1.40
2363 3575 7.365741 CAGTGGCCATATTTGATGTCTAATTC 58.634 38.462 9.72 0.00 0.00 2.17
2364 3576 7.230108 CAGTGGCCATATTTGATGTCTAATTCT 59.770 37.037 9.72 0.00 0.00 2.40
2365 3577 7.781693 AGTGGCCATATTTGATGTCTAATTCTT 59.218 33.333 9.72 0.00 0.00 2.52
2366 3578 8.416329 GTGGCCATATTTGATGTCTAATTCTTT 58.584 33.333 9.72 0.00 0.00 2.52
2367 3579 9.639563 TGGCCATATTTGATGTCTAATTCTTTA 57.360 29.630 0.00 0.00 0.00 1.85
2380 3592 9.658799 TGTCTAATTCTTTAGATCAGTTCAAGG 57.341 33.333 0.00 0.00 44.24 3.61
2381 3593 9.877178 GTCTAATTCTTTAGATCAGTTCAAGGA 57.123 33.333 0.00 0.00 44.24 3.36
2396 3608 1.694639 AAGGATTGAACGACGACGAC 58.305 50.000 15.32 8.15 42.66 4.34
2397 3609 0.453950 AGGATTGAACGACGACGACG 60.454 55.000 17.60 17.60 42.66 5.12
2398 3610 0.453282 GGATTGAACGACGACGACGA 60.453 55.000 25.15 7.83 42.66 4.20
2399 3611 0.627307 GATTGAACGACGACGACGAC 59.373 55.000 25.15 17.50 42.66 4.34
2400 3612 0.236711 ATTGAACGACGACGACGACT 59.763 50.000 25.15 12.02 42.66 4.18
2401 3613 0.655337 TTGAACGACGACGACGACTG 60.655 55.000 25.15 7.11 42.66 3.51
2402 3614 1.083144 GAACGACGACGACGACTGT 60.083 57.895 25.15 7.72 42.66 3.55
2403 3615 1.319010 GAACGACGACGACGACTGTG 61.319 60.000 25.15 0.00 42.66 3.66
2404 3616 2.499098 CGACGACGACGACTGTGG 60.499 66.667 15.32 0.00 42.66 4.17
2405 3617 2.799916 GACGACGACGACTGTGGC 60.800 66.667 15.32 0.00 42.66 5.01
2406 3618 3.251318 GACGACGACGACTGTGGCT 62.251 63.158 15.32 0.00 42.66 4.75
2407 3619 2.502080 CGACGACGACTGTGGCTC 60.502 66.667 0.00 0.00 42.66 4.70
2408 3620 2.126424 GACGACGACTGTGGCTCC 60.126 66.667 0.00 0.00 0.00 4.70
2409 3621 2.910479 ACGACGACTGTGGCTCCA 60.910 61.111 0.00 0.00 0.00 3.86
2410 3622 2.126307 CGACGACTGTGGCTCCAG 60.126 66.667 0.00 3.65 38.45 3.86
2411 3623 2.626780 CGACGACTGTGGCTCCAGA 61.627 63.158 10.95 0.00 36.30 3.86
2412 3624 1.666011 GACGACTGTGGCTCCAGAA 59.334 57.895 10.95 0.00 36.30 3.02
2413 3625 0.667792 GACGACTGTGGCTCCAGAAC 60.668 60.000 10.95 4.87 36.30 3.01
2414 3626 1.367471 CGACTGTGGCTCCAGAACA 59.633 57.895 10.95 0.00 36.30 3.18
2415 3627 0.946221 CGACTGTGGCTCCAGAACAC 60.946 60.000 10.95 0.00 36.30 3.32
2416 3628 0.394565 GACTGTGGCTCCAGAACACT 59.605 55.000 10.95 0.00 36.30 3.55
2417 3629 0.107456 ACTGTGGCTCCAGAACACTG 59.893 55.000 10.95 0.00 39.17 3.66
2418 3630 0.107456 CTGTGGCTCCAGAACACTGT 59.893 55.000 0.00 0.00 36.16 3.55
2419 3631 0.106708 TGTGGCTCCAGAACACTGTC 59.893 55.000 0.00 0.00 36.16 3.51
2420 3632 0.394565 GTGGCTCCAGAACACTGTCT 59.605 55.000 0.00 0.00 32.58 3.41
2421 3633 1.131638 TGGCTCCAGAACACTGTCTT 58.868 50.000 0.00 0.00 0.00 3.01
2422 3634 1.490490 TGGCTCCAGAACACTGTCTTT 59.510 47.619 0.00 0.00 0.00 2.52
2423 3635 2.703536 TGGCTCCAGAACACTGTCTTTA 59.296 45.455 0.00 0.00 0.00 1.85
2424 3636 3.244215 TGGCTCCAGAACACTGTCTTTAG 60.244 47.826 0.00 0.00 0.00 1.85
2425 3637 3.330267 GCTCCAGAACACTGTCTTTAGG 58.670 50.000 0.00 0.00 0.00 2.69
2426 3638 3.866449 GCTCCAGAACACTGTCTTTAGGG 60.866 52.174 0.00 0.00 0.00 3.53
2427 3639 3.578716 CTCCAGAACACTGTCTTTAGGGA 59.421 47.826 0.00 0.00 0.00 4.20
2428 3640 3.578716 TCCAGAACACTGTCTTTAGGGAG 59.421 47.826 0.00 0.00 0.00 4.30
2429 3641 3.325135 CCAGAACACTGTCTTTAGGGAGT 59.675 47.826 0.00 0.00 0.00 3.85
2430 3642 4.527038 CCAGAACACTGTCTTTAGGGAGTA 59.473 45.833 0.00 0.00 0.00 2.59
2431 3643 5.471257 CAGAACACTGTCTTTAGGGAGTAC 58.529 45.833 0.00 0.00 0.00 2.73
2432 3644 5.010719 CAGAACACTGTCTTTAGGGAGTACA 59.989 44.000 0.00 0.00 0.00 2.90
2433 3645 5.780793 AGAACACTGTCTTTAGGGAGTACAT 59.219 40.000 0.00 0.00 0.00 2.29
2434 3646 5.407407 ACACTGTCTTTAGGGAGTACATG 57.593 43.478 0.00 0.00 0.00 3.21
2435 3647 4.184629 CACTGTCTTTAGGGAGTACATGC 58.815 47.826 0.00 0.00 0.00 4.06
2436 3648 3.838317 ACTGTCTTTAGGGAGTACATGCA 59.162 43.478 0.00 0.00 0.00 3.96
2437 3649 4.471386 ACTGTCTTTAGGGAGTACATGCAT 59.529 41.667 0.00 0.00 0.00 3.96
2438 3650 4.769688 TGTCTTTAGGGAGTACATGCATG 58.230 43.478 25.09 25.09 0.00 4.06
2439 3651 4.469586 TGTCTTTAGGGAGTACATGCATGA 59.530 41.667 32.75 13.72 0.00 3.07
2440 3652 5.045942 TGTCTTTAGGGAGTACATGCATGAA 60.046 40.000 32.75 11.20 0.00 2.57
2441 3653 5.525378 GTCTTTAGGGAGTACATGCATGAAG 59.475 44.000 32.75 20.28 29.62 3.02
2442 3654 5.425217 TCTTTAGGGAGTACATGCATGAAGA 59.575 40.000 32.75 22.04 34.19 2.87
2443 3655 3.550437 AGGGAGTACATGCATGAAGAC 57.450 47.619 32.75 23.84 0.00 3.01
2444 3656 3.110705 AGGGAGTACATGCATGAAGACT 58.889 45.455 32.75 27.49 0.00 3.24
2445 3657 3.521126 AGGGAGTACATGCATGAAGACTT 59.479 43.478 32.75 11.95 0.00 3.01
2446 3658 3.873952 GGGAGTACATGCATGAAGACTTC 59.126 47.826 32.75 25.79 0.00 3.01
2447 3659 4.383552 GGGAGTACATGCATGAAGACTTCT 60.384 45.833 32.75 12.89 0.00 2.85
2448 3660 5.181748 GGAGTACATGCATGAAGACTTCTT 58.818 41.667 32.75 9.69 39.23 2.52
2449 3661 5.064452 GGAGTACATGCATGAAGACTTCTTG 59.936 44.000 32.75 21.16 36.11 3.02
2450 3662 4.940046 AGTACATGCATGAAGACTTCTTGG 59.060 41.667 32.75 14.77 36.11 3.61
2451 3663 2.490903 ACATGCATGAAGACTTCTTGGC 59.509 45.455 32.75 19.78 36.11 4.52
2452 3664 2.574006 TGCATGAAGACTTCTTGGCT 57.426 45.000 24.63 2.38 36.11 4.75
2453 3665 2.156917 TGCATGAAGACTTCTTGGCTG 58.843 47.619 24.63 12.62 36.11 4.85
2454 3666 2.157738 GCATGAAGACTTCTTGGCTGT 58.842 47.619 24.63 0.65 36.11 4.40
2455 3667 2.161211 GCATGAAGACTTCTTGGCTGTC 59.839 50.000 24.63 10.10 36.11 3.51
2456 3668 3.405831 CATGAAGACTTCTTGGCTGTCA 58.594 45.455 18.82 0.00 36.11 3.58
2457 3669 3.777106 TGAAGACTTCTTGGCTGTCAT 57.223 42.857 16.02 0.00 36.11 3.06
2458 3670 3.668447 TGAAGACTTCTTGGCTGTCATC 58.332 45.455 16.02 0.00 36.11 2.92
2459 3671 3.071457 TGAAGACTTCTTGGCTGTCATCA 59.929 43.478 16.02 0.00 36.51 3.07
2460 3672 3.777106 AGACTTCTTGGCTGTCATCAA 57.223 42.857 0.00 0.00 33.56 2.57
2461 3673 3.406764 AGACTTCTTGGCTGTCATCAAC 58.593 45.455 0.00 0.00 33.56 3.18
2462 3674 3.141398 GACTTCTTGGCTGTCATCAACA 58.859 45.455 0.00 0.00 36.18 3.33
2463 3675 3.554934 ACTTCTTGGCTGTCATCAACAA 58.445 40.909 0.00 0.00 37.45 2.83
2464 3676 3.567164 ACTTCTTGGCTGTCATCAACAAG 59.433 43.478 0.00 0.00 37.45 3.16
2465 3677 2.507484 TCTTGGCTGTCATCAACAAGG 58.493 47.619 0.00 0.00 38.25 3.61
2466 3678 2.158623 TCTTGGCTGTCATCAACAAGGT 60.159 45.455 0.00 0.00 38.25 3.50
2467 3679 1.896220 TGGCTGTCATCAACAAGGTC 58.104 50.000 0.00 0.00 37.45 3.85
2468 3680 1.142667 TGGCTGTCATCAACAAGGTCA 59.857 47.619 0.00 0.00 37.45 4.02
2469 3681 1.808945 GGCTGTCATCAACAAGGTCAG 59.191 52.381 0.00 0.00 37.45 3.51
2470 3682 1.808945 GCTGTCATCAACAAGGTCAGG 59.191 52.381 0.00 0.00 37.45 3.86
2471 3683 1.808945 CTGTCATCAACAAGGTCAGGC 59.191 52.381 0.00 0.00 37.45 4.85
2472 3684 1.168714 GTCATCAACAAGGTCAGGCC 58.831 55.000 0.00 0.00 37.58 5.19
2473 3685 0.321564 TCATCAACAAGGTCAGGCCG 60.322 55.000 0.00 0.00 43.70 6.13
2474 3686 1.002134 ATCAACAAGGTCAGGCCGG 60.002 57.895 0.00 0.00 43.70 6.13
2475 3687 3.365265 CAACAAGGTCAGGCCGGC 61.365 66.667 21.18 21.18 43.70 6.13
2476 3688 3.570212 AACAAGGTCAGGCCGGCT 61.570 61.111 28.56 9.77 43.70 5.52
2477 3689 3.553095 AACAAGGTCAGGCCGGCTC 62.553 63.158 28.56 16.85 43.70 4.70
2478 3690 3.710722 CAAGGTCAGGCCGGCTCT 61.711 66.667 28.56 19.05 43.70 4.09
2479 3691 2.038975 AAGGTCAGGCCGGCTCTA 59.961 61.111 28.56 8.88 43.70 2.43
2480 3692 2.060980 AAGGTCAGGCCGGCTCTAG 61.061 63.158 28.56 13.77 43.70 2.43
2481 3693 2.760385 GGTCAGGCCGGCTCTAGT 60.760 66.667 28.56 2.93 0.00 2.57
2482 3694 1.455217 GGTCAGGCCGGCTCTAGTA 60.455 63.158 28.56 7.91 0.00 1.82
2483 3695 1.734748 GTCAGGCCGGCTCTAGTAC 59.265 63.158 28.56 15.38 0.00 2.73
2484 3696 1.822613 TCAGGCCGGCTCTAGTACG 60.823 63.158 28.56 9.38 0.00 3.67
2488 3700 3.747266 CCGGCTCTAGTACGGGAG 58.253 66.667 12.50 11.89 43.69 4.30
2491 3703 3.032339 GCTCTAGTACGGGAGCGG 58.968 66.667 20.93 4.90 44.01 5.52
2492 3704 3.032339 CTCTAGTACGGGAGCGGC 58.968 66.667 0.00 0.00 0.00 6.53
2493 3705 1.822613 CTCTAGTACGGGAGCGGCA 60.823 63.158 1.45 0.00 0.00 5.69
2494 3706 1.378911 TCTAGTACGGGAGCGGCAA 60.379 57.895 1.45 0.00 0.00 4.52
2495 3707 1.226888 CTAGTACGGGAGCGGCAAC 60.227 63.158 1.45 0.00 0.00 4.17
2496 3708 1.940883 CTAGTACGGGAGCGGCAACA 61.941 60.000 1.45 0.00 0.00 3.33
2497 3709 1.940883 TAGTACGGGAGCGGCAACAG 61.941 60.000 1.45 0.00 0.00 3.16
2498 3710 4.752879 TACGGGAGCGGCAACAGC 62.753 66.667 1.45 0.00 36.55 4.40
2505 3717 3.113745 GCGGCAACAGCAGCATAT 58.886 55.556 7.68 0.00 46.58 1.78
2506 3718 1.009222 GCGGCAACAGCAGCATATC 60.009 57.895 7.68 0.00 46.58 1.63
2507 3719 1.277739 CGGCAACAGCAGCATATCG 59.722 57.895 0.00 0.00 0.00 2.92
2508 3720 1.650912 GGCAACAGCAGCATATCGG 59.349 57.895 0.00 0.00 0.00 4.18
2509 3721 1.009222 GCAACAGCAGCATATCGGC 60.009 57.895 0.00 0.00 36.06 5.54
2510 3722 1.277739 CAACAGCAGCATATCGGCG 59.722 57.895 0.00 0.00 40.93 6.46
2511 3723 1.889105 AACAGCAGCATATCGGCGG 60.889 57.895 7.21 0.00 40.93 6.13
2515 3727 3.108289 CAGCATATCGGCGGCTCG 61.108 66.667 7.21 1.94 39.27 5.03
2516 3728 3.606662 AGCATATCGGCGGCTCGT 61.607 61.111 7.21 0.00 39.27 4.18
2517 3729 2.661866 GCATATCGGCGGCTCGTT 60.662 61.111 7.21 0.01 0.00 3.85
2518 3730 2.658707 GCATATCGGCGGCTCGTTC 61.659 63.158 7.21 0.00 0.00 3.95
2519 3731 2.022129 CATATCGGCGGCTCGTTCC 61.022 63.158 7.21 0.00 0.00 3.62
2520 3732 2.201022 ATATCGGCGGCTCGTTCCT 61.201 57.895 7.21 0.00 0.00 3.36
2521 3733 2.421877 ATATCGGCGGCTCGTTCCTG 62.422 60.000 7.21 0.00 0.00 3.86
2532 3744 3.064324 GTTCCTGGCTGCGGCAAT 61.064 61.111 21.31 0.00 37.73 3.56
2533 3745 3.063704 TTCCTGGCTGCGGCAATG 61.064 61.111 21.31 5.15 37.73 2.82
2536 3748 3.376078 CTGGCTGCGGCAATGGTT 61.376 61.111 21.31 0.00 37.73 3.67
2537 3749 3.636313 CTGGCTGCGGCAATGGTTG 62.636 63.158 21.31 0.00 37.73 3.77
2538 3750 3.683937 GGCTGCGGCAATGGTTGT 61.684 61.111 21.31 0.00 40.87 3.32
2539 3751 2.339712 GCTGCGGCAATGGTTGTT 59.660 55.556 14.08 0.00 38.54 2.83
2540 3752 1.734117 GCTGCGGCAATGGTTGTTC 60.734 57.895 14.08 0.00 38.54 3.18
2541 3753 1.442520 CTGCGGCAATGGTTGTTCG 60.443 57.895 3.44 0.00 34.43 3.95
2542 3754 2.126502 GCGGCAATGGTTGTTCGG 60.127 61.111 0.00 0.00 32.89 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.430399 AAGGTCATGAATATGGAAAAGATTCAT 57.570 29.630 0.00 3.07 46.35 2.57
57 58 8.827832 AAGGTCATGAATATGGAAAAGATTCA 57.172 30.769 0.00 0.00 42.22 2.57
103 106 5.421212 TTTGAAAATGTTCCTGCATTTGC 57.579 34.783 5.03 4.13 45.17 3.68
109 112 4.268405 CCGCATATTTGAAAATGTTCCTGC 59.732 41.667 0.00 0.00 32.28 4.85
138 141 8.593945 ACTGAAAAGAGCCCATGAATTATAAA 57.406 30.769 0.00 0.00 0.00 1.40
139 142 8.593945 AACTGAAAAGAGCCCATGAATTATAA 57.406 30.769 0.00 0.00 0.00 0.98
140 143 7.833682 TGAACTGAAAAGAGCCCATGAATTATA 59.166 33.333 0.00 0.00 0.00 0.98
141 144 6.664816 TGAACTGAAAAGAGCCCATGAATTAT 59.335 34.615 0.00 0.00 0.00 1.28
142 145 6.009589 TGAACTGAAAAGAGCCCATGAATTA 58.990 36.000 0.00 0.00 0.00 1.40
155 158 9.054191 GTTTTGAAAATTTGCTGAACTGAAAAG 57.946 29.630 0.00 0.00 0.00 2.27
157 160 8.321650 AGTTTTGAAAATTTGCTGAACTGAAA 57.678 26.923 13.59 0.00 0.00 2.69
195 198 6.872020 TGGTTCCTTGTATAGAAGAGAAAACG 59.128 38.462 11.09 0.00 0.00 3.60
205 208 4.951715 TCGTTAGCTGGTTCCTTGTATAGA 59.048 41.667 0.00 0.00 0.00 1.98
208 211 3.259876 TGTCGTTAGCTGGTTCCTTGTAT 59.740 43.478 0.00 0.00 0.00 2.29
216 219 1.961793 TTGCTTGTCGTTAGCTGGTT 58.038 45.000 0.00 0.00 39.38 3.67
265 289 0.034186 AAGCCCCATTCGCTCAATCA 60.034 50.000 0.00 0.00 34.84 2.57
268 292 0.393808 GGTAAGCCCCATTCGCTCAA 60.394 55.000 0.00 0.00 34.84 3.02
339 363 1.483415 ACCTCCTAATCGGCGCTTTAA 59.517 47.619 7.64 0.00 0.00 1.52
341 365 0.179081 GACCTCCTAATCGGCGCTTT 60.179 55.000 7.64 0.44 0.00 3.51
345 369 1.001158 GAAGAGACCTCCTAATCGGCG 60.001 57.143 0.00 0.00 0.00 6.46
369 393 5.276395 CGTGACACGATGAATAGGAAATGAC 60.276 44.000 23.39 0.00 46.05 3.06
372 396 4.566759 CACGTGACACGATGAATAGGAAAT 59.433 41.667 33.12 4.00 46.05 2.17
383 407 2.733218 CACCGCACGTGACACGAT 60.733 61.111 33.12 15.22 46.05 3.73
387 411 1.214325 CTATCCACCGCACGTGACA 59.786 57.895 22.23 0.00 46.20 3.58
394 418 1.743623 CGTTTGCCTATCCACCGCA 60.744 57.895 0.00 0.00 0.00 5.69
395 419 3.098555 CGTTTGCCTATCCACCGC 58.901 61.111 0.00 0.00 0.00 5.68
405 429 2.361865 TGGGGGTATGCGTTTGCC 60.362 61.111 0.00 0.00 41.78 4.52
443 467 1.462731 AAAAGCCACAATGCGCCAGA 61.463 50.000 4.18 0.00 36.02 3.86
446 470 4.359475 AAAAAGCCACAATGCGCC 57.641 50.000 4.18 0.00 36.02 6.53
467 724 1.982660 ACCAGTCGAAGAGAGACACA 58.017 50.000 0.00 0.00 40.84 3.72
488 757 7.070074 GGTATTCTTGATCTGGAGAGGTTCTAA 59.930 40.741 0.00 0.00 0.00 2.10
498 767 3.459227 TGCATGGGTATTCTTGATCTGGA 59.541 43.478 0.00 0.00 0.00 3.86
500 769 5.334646 CGAATGCATGGGTATTCTTGATCTG 60.335 44.000 0.00 0.00 42.05 2.90
501 770 4.758674 CGAATGCATGGGTATTCTTGATCT 59.241 41.667 0.00 0.00 42.05 2.75
502 771 4.614535 GCGAATGCATGGGTATTCTTGATC 60.615 45.833 0.00 0.00 42.05 2.92
504 773 2.618241 GCGAATGCATGGGTATTCTTGA 59.382 45.455 0.00 0.00 42.05 3.02
506 775 1.956477 GGCGAATGCATGGGTATTCTT 59.044 47.619 0.00 0.00 42.05 2.52
507 776 1.143684 AGGCGAATGCATGGGTATTCT 59.856 47.619 0.00 0.00 42.05 2.40
509 778 2.884639 GTTAGGCGAATGCATGGGTATT 59.115 45.455 0.00 0.00 45.35 1.89
510 779 2.504367 GTTAGGCGAATGCATGGGTAT 58.496 47.619 0.00 0.00 45.35 2.73
512 781 0.751643 GGTTAGGCGAATGCATGGGT 60.752 55.000 0.00 0.00 45.35 4.51
513 782 1.455383 GGGTTAGGCGAATGCATGGG 61.455 60.000 0.00 0.00 45.35 4.00
515 784 0.664761 CTGGGTTAGGCGAATGCATG 59.335 55.000 0.00 0.00 45.35 4.06
516 785 0.466189 CCTGGGTTAGGCGAATGCAT 60.466 55.000 0.00 0.00 45.35 3.96
518 787 1.823899 CCCTGGGTTAGGCGAATGC 60.824 63.158 3.97 0.00 45.89 3.56
520 789 0.702316 AAACCCTGGGTTAGGCGAAT 59.298 50.000 30.43 11.15 46.20 3.34
521 790 0.479378 AAAACCCTGGGTTAGGCGAA 59.521 50.000 30.43 0.00 46.20 4.70
523 792 0.885879 GAAAAACCCTGGGTTAGGCG 59.114 55.000 30.43 0.00 46.20 5.52
524 793 1.263356 GGAAAAACCCTGGGTTAGGC 58.737 55.000 30.43 20.52 46.20 3.93
525 794 1.074244 TCGGAAAAACCCTGGGTTAGG 59.926 52.381 30.43 17.20 46.20 2.69
526 795 2.156917 GTCGGAAAAACCCTGGGTTAG 58.843 52.381 30.43 18.42 46.20 2.34
529 798 1.152138 GGTCGGAAAAACCCTGGGT 59.848 57.895 14.05 14.05 37.65 4.51
530 799 0.893727 CTGGTCGGAAAAACCCTGGG 60.894 60.000 12.28 12.28 35.84 4.45
531 800 1.524008 GCTGGTCGGAAAAACCCTGG 61.524 60.000 0.00 0.00 35.84 4.45
532 801 0.537371 AGCTGGTCGGAAAAACCCTG 60.537 55.000 0.00 0.00 35.84 4.45
533 802 0.185175 AAGCTGGTCGGAAAAACCCT 59.815 50.000 0.00 0.00 35.84 4.34
534 803 1.037493 AAAGCTGGTCGGAAAAACCC 58.963 50.000 0.00 0.00 35.84 4.11
535 804 2.882927 AAAAGCTGGTCGGAAAAACC 57.117 45.000 0.00 0.00 37.31 3.27
536 805 3.727227 CGTAAAAAGCTGGTCGGAAAAAC 59.273 43.478 0.00 0.00 0.00 2.43
537 806 3.377798 ACGTAAAAAGCTGGTCGGAAAAA 59.622 39.130 0.00 0.00 0.00 1.94
538 807 2.944349 ACGTAAAAAGCTGGTCGGAAAA 59.056 40.909 0.00 0.00 0.00 2.29
539 808 2.563702 ACGTAAAAAGCTGGTCGGAAA 58.436 42.857 0.00 0.00 0.00 3.13
540 809 2.243602 ACGTAAAAAGCTGGTCGGAA 57.756 45.000 0.00 0.00 0.00 4.30
541 810 2.243602 AACGTAAAAAGCTGGTCGGA 57.756 45.000 0.00 0.00 0.00 4.55
542 811 3.002965 AGAAAACGTAAAAAGCTGGTCGG 59.997 43.478 0.00 0.00 0.00 4.79
543 812 4.205323 AGAAAACGTAAAAAGCTGGTCG 57.795 40.909 0.00 0.00 0.00 4.79
544 813 8.880750 AGATATAGAAAACGTAAAAAGCTGGTC 58.119 33.333 0.00 0.00 0.00 4.02
606 875 5.591099 AGCATCCGCGAAATCAAAAATATT 58.409 33.333 8.23 0.00 45.49 1.28
608 877 4.630894 AGCATCCGCGAAATCAAAAATA 57.369 36.364 8.23 0.00 45.49 1.40
615 884 2.542766 TGAAAAGCATCCGCGAAATC 57.457 45.000 8.23 0.00 45.49 2.17
620 889 1.137194 TGCATGAAAAGCATCCGCG 59.863 52.632 0.00 0.00 45.49 6.46
628 897 2.256174 CGAAGGCACATGCATGAAAAG 58.744 47.619 32.75 18.65 44.36 2.27
645 914 2.957489 CACACGCACGGACACGAA 60.957 61.111 0.00 0.00 44.60 3.85
654 923 2.327940 GTCACAAGGCACACGCAC 59.672 61.111 0.00 0.00 41.24 5.34
681 950 9.696917 AAACTCTCCATTTTCAAATGTTGTATC 57.303 29.630 10.63 0.00 43.24 2.24
703 972 2.762327 GTGGGAATCATGCATGGAAACT 59.238 45.455 25.97 6.72 0.00 2.66
704 973 2.480073 CGTGGGAATCATGCATGGAAAC 60.480 50.000 25.97 13.99 0.00 2.78
705 974 1.750206 CGTGGGAATCATGCATGGAAA 59.250 47.619 25.97 7.98 0.00 3.13
711 980 1.271934 CCAAAACGTGGGAATCATGCA 59.728 47.619 0.00 0.00 44.64 3.96
724 993 1.539388 TGATAGCTTGGCACCAAAACG 59.461 47.619 3.29 0.00 35.33 3.60
725 994 3.193267 TGATGATAGCTTGGCACCAAAAC 59.807 43.478 3.29 0.00 35.33 2.43
730 999 0.940126 CGTGATGATAGCTTGGCACC 59.060 55.000 0.00 0.00 0.00 5.01
731 1000 1.656652 ACGTGATGATAGCTTGGCAC 58.343 50.000 0.00 0.00 0.00 5.01
751 1029 3.084039 TCCGGTGTCAACGTATAAGAGT 58.916 45.455 9.85 0.00 0.00 3.24
755 1033 3.940209 AGTTCCGGTGTCAACGTATAA 57.060 42.857 9.85 0.00 0.00 0.98
762 1040 1.305201 GCTTCAAGTTCCGGTGTCAA 58.695 50.000 0.00 0.00 0.00 3.18
784 1065 4.025401 GGTTGCAACACTCCGGCG 62.025 66.667 29.55 0.00 0.00 6.46
791 1072 0.307760 CTCCGACTTGGTTGCAACAC 59.692 55.000 29.55 19.16 39.52 3.32
817 1098 3.759581 AGAACTCGGACACAACCTACTA 58.240 45.455 0.00 0.00 0.00 1.82
823 1104 2.223971 TGGAGAAGAACTCGGACACAAC 60.224 50.000 0.00 0.00 45.76 3.32
836 1117 2.808919 ACGAAGTGGAGATGGAGAAGA 58.191 47.619 0.00 0.00 42.51 2.87
869 1150 2.187163 GGACGAACTAGGGCTGGC 59.813 66.667 0.00 0.00 0.00 4.85
880 1161 5.707298 CGGTAGATATTAGTTAGGGGACGAA 59.293 44.000 0.00 0.00 0.00 3.85
883 1164 8.052141 AGATACGGTAGATATTAGTTAGGGGAC 58.948 40.741 0.00 0.00 0.00 4.46
895 1176 7.282675 CCGAGTCCAATTAGATACGGTAGATAT 59.717 40.741 11.25 0.00 34.75 1.63
898 1179 4.758674 CCGAGTCCAATTAGATACGGTAGA 59.241 45.833 11.25 0.00 34.75 2.59
899 1180 4.758674 TCCGAGTCCAATTAGATACGGTAG 59.241 45.833 16.07 0.00 38.00 3.18
902 1183 4.785511 ATCCGAGTCCAATTAGATACGG 57.214 45.455 12.55 12.55 38.08 4.02
903 1184 5.769367 TCAATCCGAGTCCAATTAGATACG 58.231 41.667 0.00 0.00 0.00 3.06
904 1185 6.647067 CCTTCAATCCGAGTCCAATTAGATAC 59.353 42.308 0.00 0.00 0.00 2.24
928 1211 2.002127 CTTGATTGACGCGCTCTCC 58.998 57.895 5.73 0.00 0.00 3.71
993 1281 1.884464 CAGTCCCGCCATGTCGATG 60.884 63.158 0.00 0.00 0.00 3.84
1170 1525 2.830514 GGTAGGGTATGCCTGGGCC 61.831 68.421 9.28 0.00 41.09 5.80
1352 1737 8.745590 TGTTGTAGTAGTTATTGCTGTATCTGA 58.254 33.333 0.00 0.00 0.00 3.27
1353 1738 8.926715 TGTTGTAGTAGTTATTGCTGTATCTG 57.073 34.615 0.00 0.00 0.00 2.90
1354 1739 9.367444 GTTGTTGTAGTAGTTATTGCTGTATCT 57.633 33.333 0.00 0.00 0.00 1.98
1361 1755 5.445540 GCTCCGTTGTTGTAGTAGTTATTGC 60.446 44.000 0.00 0.00 0.00 3.56
1422 1819 2.203832 TGCCTCTGTGGAGCTCCA 60.204 61.111 32.00 32.00 45.30 3.86
1442 1839 0.958382 GTTCAGCGGCATGTTGGGTA 60.958 55.000 1.45 0.00 0.00 3.69
1498 1904 0.103208 GTGTCATCTAGGCTCGGTGG 59.897 60.000 0.00 0.00 0.00 4.61
1551 1984 4.096532 TGTTGAAGGACAGCTATCGTCTAG 59.903 45.833 3.02 0.00 33.73 2.43
1552 1985 4.014406 TGTTGAAGGACAGCTATCGTCTA 58.986 43.478 3.02 0.00 33.73 2.59
1554 1987 3.232213 TGTTGAAGGACAGCTATCGTC 57.768 47.619 0.00 0.00 0.00 4.20
1661 2149 9.090103 AGAGATCCAAGGATATTTAATACGTGA 57.910 33.333 0.68 0.00 34.60 4.35
1845 3038 9.757227 TTTGTCTTTTCAGAGTTTTTCTTTGAA 57.243 25.926 0.00 0.00 42.76 2.69
1846 3039 9.927668 ATTTGTCTTTTCAGAGTTTTTCTTTGA 57.072 25.926 0.00 0.00 35.84 2.69
1850 3043 9.578439 CAAGATTTGTCTTTTCAGAGTTTTTCT 57.422 29.630 0.00 0.00 36.25 2.52
1851 3044 8.323854 GCAAGATTTGTCTTTTCAGAGTTTTTC 58.676 33.333 0.00 0.00 0.00 2.29
1852 3045 7.818930 TGCAAGATTTGTCTTTTCAGAGTTTTT 59.181 29.630 0.00 0.00 0.00 1.94
1866 3059 7.276438 GGAGTAAAAATCCATGCAAGATTTGTC 59.724 37.037 21.94 16.77 41.84 3.18
1880 3073 7.926555 TCGATCTGTATTCTGGAGTAAAAATCC 59.073 37.037 0.00 0.00 37.35 3.01
1891 3084 4.818642 AGCATCATCGATCTGTATTCTGG 58.181 43.478 0.00 0.00 0.00 3.86
1909 3102 7.712639 AGTCAAATATCAATCGACACTAAGCAT 59.287 33.333 0.00 0.00 0.00 3.79
1911 3104 7.470289 AGTCAAATATCAATCGACACTAAGC 57.530 36.000 0.00 0.00 0.00 3.09
1991 3197 6.809869 AGAAAGGAACTCTGATTTGTTTTGG 58.190 36.000 0.00 0.00 38.49 3.28
2046 3256 6.357367 TCCCAGGAGCAGAAAGATTAAATAC 58.643 40.000 0.00 0.00 0.00 1.89
2049 3259 4.927267 TCCCAGGAGCAGAAAGATTAAA 57.073 40.909 0.00 0.00 0.00 1.52
2081 3291 2.123854 CCCGTGGAGATCGAGGGA 60.124 66.667 5.29 0.00 44.70 4.20
2084 3294 1.953017 CTAGCCCGTGGAGATCGAG 59.047 63.158 0.00 0.00 0.00 4.04
2111 3321 2.271497 CAGGCAGAGGGAGGCAAG 59.729 66.667 0.00 0.00 0.00 4.01
2115 3325 4.486503 GCAGCAGGCAGAGGGAGG 62.487 72.222 0.00 0.00 43.97 4.30
2137 3348 4.577246 CTCTCCGCTACCAGCCGC 62.577 72.222 0.00 0.00 38.18 6.53
2142 3353 2.043248 GTCCCCTCTCCGCTACCA 60.043 66.667 0.00 0.00 0.00 3.25
2146 3357 1.684049 CAGAAGTCCCCTCTCCGCT 60.684 63.158 0.00 0.00 0.00 5.52
2151 3362 1.920835 GGCACCAGAAGTCCCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
2159 3370 1.610102 CCTGAGACAAGGCACCAGAAG 60.610 57.143 0.00 0.00 0.00 2.85
2171 3382 6.069331 CCTACCTATTTACTAGCCTGAGACA 58.931 44.000 0.00 0.00 0.00 3.41
2177 3388 6.040662 AGAACCCTACCTATTTACTAGCCT 57.959 41.667 0.00 0.00 0.00 4.58
2186 3397 4.583907 GCGAGAACTAGAACCCTACCTATT 59.416 45.833 0.00 0.00 0.00 1.73
2222 3434 3.440872 AGAAGAAGTGTCGCTATTCGTCT 59.559 43.478 0.00 0.00 37.09 4.18
2227 3439 4.082679 ACTCGAAGAAGAAGTGTCGCTATT 60.083 41.667 0.00 0.00 34.09 1.73
2230 3442 1.609555 ACTCGAAGAAGAAGTGTCGCT 59.390 47.619 0.00 0.00 34.09 4.93
2234 3446 3.754323 AGATCGACTCGAAGAAGAAGTGT 59.246 43.478 5.00 0.00 39.99 3.55
2236 3448 4.698304 AGAAGATCGACTCGAAGAAGAAGT 59.302 41.667 5.00 0.00 39.99 3.01
2253 3465 1.622811 GATGATCGGAGCCCAGAAGAT 59.377 52.381 0.00 0.00 0.00 2.40
2258 3470 1.117749 TGAGGATGATCGGAGCCCAG 61.118 60.000 0.00 0.00 0.00 4.45
2259 3471 0.690744 TTGAGGATGATCGGAGCCCA 60.691 55.000 0.00 0.00 0.00 5.36
2271 3483 4.168101 TCCTAGTGGACAAACTTGAGGAT 58.832 43.478 0.00 0.00 37.46 3.24
2286 3498 2.294791 CTCGGCCTTATCTGTCCTAGTG 59.705 54.545 0.00 0.00 0.00 2.74
2287 3499 2.588620 CTCGGCCTTATCTGTCCTAGT 58.411 52.381 0.00 0.00 0.00 2.57
2290 3502 0.397816 AGCTCGGCCTTATCTGTCCT 60.398 55.000 0.00 0.00 0.00 3.85
2295 3507 2.089600 ACCTTAGCTCGGCCTTATCT 57.910 50.000 0.00 0.00 0.00 1.98
2299 3511 1.209747 CCTTAACCTTAGCTCGGCCTT 59.790 52.381 0.00 0.00 0.00 4.35
2302 3514 2.398252 AACCTTAACCTTAGCTCGGC 57.602 50.000 0.00 0.00 0.00 5.54
2304 3516 3.858238 CGAGAAACCTTAACCTTAGCTCG 59.142 47.826 0.00 0.00 37.09 5.03
2310 3522 1.071228 ACGGCGAGAAACCTTAACCTT 59.929 47.619 16.62 0.00 0.00 3.50
2311 3523 0.683412 ACGGCGAGAAACCTTAACCT 59.317 50.000 16.62 0.00 0.00 3.50
2312 3524 1.995484 GTACGGCGAGAAACCTTAACC 59.005 52.381 16.62 0.00 0.00 2.85
2313 3525 1.650645 CGTACGGCGAGAAACCTTAAC 59.349 52.381 16.62 0.00 44.77 2.01
2314 3526 1.269448 ACGTACGGCGAGAAACCTTAA 59.731 47.619 21.06 0.00 44.77 1.85
2315 3527 0.881118 ACGTACGGCGAGAAACCTTA 59.119 50.000 21.06 0.00 44.77 2.69
2316 3528 0.881118 TACGTACGGCGAGAAACCTT 59.119 50.000 21.06 0.00 44.77 3.50
2317 3529 1.098050 ATACGTACGGCGAGAAACCT 58.902 50.000 21.06 0.00 44.77 3.50
2318 3530 1.194495 CATACGTACGGCGAGAAACC 58.806 55.000 21.06 0.00 44.77 3.27
2319 3531 0.569349 GCATACGTACGGCGAGAAAC 59.431 55.000 21.06 5.11 44.77 2.78
2320 3532 0.170784 TGCATACGTACGGCGAGAAA 59.829 50.000 21.06 0.00 44.77 2.52
2321 3533 0.248336 CTGCATACGTACGGCGAGAA 60.248 55.000 21.06 0.00 44.77 2.87
2322 3534 1.354155 CTGCATACGTACGGCGAGA 59.646 57.895 21.06 0.00 44.77 4.04
2323 3535 1.063649 ACTGCATACGTACGGCGAG 59.936 57.895 21.06 14.31 44.77 5.03
2324 3536 1.226463 CACTGCATACGTACGGCGA 60.226 57.895 21.06 4.64 44.77 5.54
2326 3538 2.522638 GCCACTGCATACGTACGGC 61.523 63.158 21.06 13.90 37.47 5.68
2327 3539 1.881252 GGCCACTGCATACGTACGG 60.881 63.158 21.06 2.64 40.13 4.02
2328 3540 0.529773 ATGGCCACTGCATACGTACG 60.530 55.000 8.16 15.01 40.13 3.67
2329 3541 2.519377 TATGGCCACTGCATACGTAC 57.481 50.000 8.16 0.00 40.13 3.67
2330 3542 3.762407 AATATGGCCACTGCATACGTA 57.238 42.857 8.16 0.00 40.13 3.57
2331 3543 2.618241 CAAATATGGCCACTGCATACGT 59.382 45.455 8.16 0.00 40.13 3.57
2332 3544 2.877786 TCAAATATGGCCACTGCATACG 59.122 45.455 8.16 0.00 40.13 3.06
2333 3545 4.279169 ACATCAAATATGGCCACTGCATAC 59.721 41.667 8.16 0.00 40.13 2.39
2334 3546 4.472496 ACATCAAATATGGCCACTGCATA 58.528 39.130 8.16 0.00 40.13 3.14
2335 3547 3.302161 ACATCAAATATGGCCACTGCAT 58.698 40.909 8.16 0.00 40.13 3.96
2336 3548 2.689471 GACATCAAATATGGCCACTGCA 59.311 45.455 8.16 0.00 40.13 4.41
2337 3549 2.954318 AGACATCAAATATGGCCACTGC 59.046 45.455 8.16 0.00 0.00 4.40
2338 3550 6.889301 ATTAGACATCAAATATGGCCACTG 57.111 37.500 8.16 3.24 0.00 3.66
2339 3551 7.293073 AGAATTAGACATCAAATATGGCCACT 58.707 34.615 8.16 0.00 0.00 4.00
2340 3552 7.516198 AGAATTAGACATCAAATATGGCCAC 57.484 36.000 8.16 0.00 0.00 5.01
2341 3553 8.537728 AAAGAATTAGACATCAAATATGGCCA 57.462 30.769 8.56 8.56 0.00 5.36
2359 3571 9.745018 TCAATCCTTGAACTGATCTAAAGAATT 57.255 29.630 0.00 0.00 36.59 2.17
2360 3572 9.745018 TTCAATCCTTGAACTGATCTAAAGAAT 57.255 29.630 0.00 0.00 44.21 2.40
2374 3586 2.055838 CGTCGTCGTTCAATCCTTGAA 58.944 47.619 0.00 0.00 46.68 2.69
2375 3587 1.267533 TCGTCGTCGTTCAATCCTTGA 59.732 47.619 1.33 0.00 38.33 3.02
2376 3588 1.385743 GTCGTCGTCGTTCAATCCTTG 59.614 52.381 1.33 0.00 38.33 3.61
2377 3589 1.694639 GTCGTCGTCGTTCAATCCTT 58.305 50.000 1.33 0.00 38.33 3.36
2378 3590 0.453950 CGTCGTCGTCGTTCAATCCT 60.454 55.000 3.67 0.00 38.33 3.24
2379 3591 0.453282 TCGTCGTCGTCGTTCAATCC 60.453 55.000 11.41 0.00 38.33 3.01
2380 3592 0.627307 GTCGTCGTCGTCGTTCAATC 59.373 55.000 11.41 0.00 38.33 2.67
2381 3593 0.236711 AGTCGTCGTCGTCGTTCAAT 59.763 50.000 11.41 0.00 38.33 2.57
2382 3594 0.655337 CAGTCGTCGTCGTCGTTCAA 60.655 55.000 11.41 0.00 38.33 2.69
2383 3595 1.083209 CAGTCGTCGTCGTCGTTCA 60.083 57.895 11.41 0.00 38.33 3.18
2384 3596 1.083144 ACAGTCGTCGTCGTCGTTC 60.083 57.895 11.41 6.72 38.33 3.95
2385 3597 1.368493 CACAGTCGTCGTCGTCGTT 60.368 57.895 11.41 0.00 38.33 3.85
2386 3598 2.247557 CACAGTCGTCGTCGTCGT 59.752 61.111 11.41 0.00 38.33 4.34
2387 3599 2.499098 CCACAGTCGTCGTCGTCG 60.499 66.667 5.50 5.50 38.33 5.12
2388 3600 2.799916 GCCACAGTCGTCGTCGTC 60.800 66.667 1.33 0.00 38.33 4.20
2389 3601 3.251318 GAGCCACAGTCGTCGTCGT 62.251 63.158 1.33 0.00 38.33 4.34
2390 3602 2.502080 GAGCCACAGTCGTCGTCG 60.502 66.667 0.00 0.00 38.55 5.12
2391 3603 2.126424 GGAGCCACAGTCGTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
2392 3604 2.910479 TGGAGCCACAGTCGTCGT 60.910 61.111 0.00 0.00 0.00 4.34
2393 3605 2.126307 CTGGAGCCACAGTCGTCG 60.126 66.667 0.00 0.00 33.81 5.12
2394 3606 0.667792 GTTCTGGAGCCACAGTCGTC 60.668 60.000 5.30 0.00 39.48 4.20
2395 3607 1.367840 GTTCTGGAGCCACAGTCGT 59.632 57.895 5.30 0.00 39.48 4.34
2396 3608 0.946221 GTGTTCTGGAGCCACAGTCG 60.946 60.000 5.30 0.00 39.48 4.18
2397 3609 0.394565 AGTGTTCTGGAGCCACAGTC 59.605 55.000 5.30 2.08 39.48 3.51
2398 3610 0.107456 CAGTGTTCTGGAGCCACAGT 59.893 55.000 5.30 0.00 39.48 3.55
2399 3611 0.107456 ACAGTGTTCTGGAGCCACAG 59.893 55.000 0.00 0.00 45.14 3.66
2400 3612 0.106708 GACAGTGTTCTGGAGCCACA 59.893 55.000 0.00 0.00 45.14 4.17
2401 3613 0.394565 AGACAGTGTTCTGGAGCCAC 59.605 55.000 0.00 0.00 45.14 5.01
2402 3614 1.131638 AAGACAGTGTTCTGGAGCCA 58.868 50.000 0.00 0.00 45.14 4.75
2403 3615 2.262423 AAAGACAGTGTTCTGGAGCC 57.738 50.000 0.00 0.00 45.14 4.70
2404 3616 3.330267 CCTAAAGACAGTGTTCTGGAGC 58.670 50.000 0.00 0.00 45.14 4.70
2405 3617 3.578716 TCCCTAAAGACAGTGTTCTGGAG 59.421 47.826 0.00 0.00 45.14 3.86
2406 3618 3.578716 CTCCCTAAAGACAGTGTTCTGGA 59.421 47.826 0.00 0.00 45.14 3.86
2407 3619 3.325135 ACTCCCTAAAGACAGTGTTCTGG 59.675 47.826 0.00 0.00 45.14 3.86
2408 3620 4.608948 ACTCCCTAAAGACAGTGTTCTG 57.391 45.455 0.00 0.00 46.18 3.02
2409 3621 5.145564 TGTACTCCCTAAAGACAGTGTTCT 58.854 41.667 0.00 0.00 0.00 3.01
2410 3622 5.464030 TGTACTCCCTAAAGACAGTGTTC 57.536 43.478 0.00 0.00 0.00 3.18
2411 3623 5.794894 CATGTACTCCCTAAAGACAGTGTT 58.205 41.667 0.00 0.00 0.00 3.32
2412 3624 4.322801 GCATGTACTCCCTAAAGACAGTGT 60.323 45.833 0.00 0.00 0.00 3.55
2413 3625 4.184629 GCATGTACTCCCTAAAGACAGTG 58.815 47.826 0.00 0.00 0.00 3.66
2414 3626 3.838317 TGCATGTACTCCCTAAAGACAGT 59.162 43.478 0.00 0.00 0.00 3.55
2415 3627 4.471904 TGCATGTACTCCCTAAAGACAG 57.528 45.455 0.00 0.00 0.00 3.51
2416 3628 4.469586 TCATGCATGTACTCCCTAAAGACA 59.530 41.667 25.43 0.00 0.00 3.41
2417 3629 5.023533 TCATGCATGTACTCCCTAAAGAC 57.976 43.478 25.43 0.00 0.00 3.01
2418 3630 5.425217 TCTTCATGCATGTACTCCCTAAAGA 59.575 40.000 25.43 19.03 0.00 2.52
2419 3631 5.525378 GTCTTCATGCATGTACTCCCTAAAG 59.475 44.000 25.43 17.23 0.00 1.85
2420 3632 5.189736 AGTCTTCATGCATGTACTCCCTAAA 59.810 40.000 25.43 8.79 0.00 1.85
2421 3633 4.716784 AGTCTTCATGCATGTACTCCCTAA 59.283 41.667 25.43 9.48 0.00 2.69
2422 3634 4.290093 AGTCTTCATGCATGTACTCCCTA 58.710 43.478 25.43 1.24 0.00 3.53
2423 3635 3.110705 AGTCTTCATGCATGTACTCCCT 58.889 45.455 25.43 12.29 0.00 4.20
2424 3636 3.550437 AGTCTTCATGCATGTACTCCC 57.450 47.619 25.43 10.39 0.00 4.30
2425 3637 4.764172 AGAAGTCTTCATGCATGTACTCC 58.236 43.478 25.43 15.21 0.00 3.85
2426 3638 5.064452 CCAAGAAGTCTTCATGCATGTACTC 59.936 44.000 25.43 17.89 33.11 2.59
2427 3639 4.940046 CCAAGAAGTCTTCATGCATGTACT 59.060 41.667 25.43 21.90 33.11 2.73
2428 3640 4.437930 GCCAAGAAGTCTTCATGCATGTAC 60.438 45.833 25.43 20.26 33.11 2.90
2429 3641 3.691118 GCCAAGAAGTCTTCATGCATGTA 59.309 43.478 25.43 15.93 33.11 2.29
2430 3642 2.490903 GCCAAGAAGTCTTCATGCATGT 59.509 45.455 25.43 5.72 33.11 3.21
2431 3643 2.753452 AGCCAAGAAGTCTTCATGCATG 59.247 45.455 21.07 21.07 33.11 4.06
2432 3644 2.753452 CAGCCAAGAAGTCTTCATGCAT 59.247 45.455 14.97 0.00 33.11 3.96
2433 3645 2.156917 CAGCCAAGAAGTCTTCATGCA 58.843 47.619 14.97 0.00 33.11 3.96
2434 3646 2.157738 ACAGCCAAGAAGTCTTCATGC 58.842 47.619 14.97 12.75 33.11 4.06
2435 3647 3.405831 TGACAGCCAAGAAGTCTTCATG 58.594 45.455 14.97 12.51 33.11 3.07
2436 3648 3.777106 TGACAGCCAAGAAGTCTTCAT 57.223 42.857 14.97 0.00 33.11 2.57
2437 3649 3.071457 TGATGACAGCCAAGAAGTCTTCA 59.929 43.478 14.97 0.00 41.30 3.02
2438 3650 3.668447 TGATGACAGCCAAGAAGTCTTC 58.332 45.455 4.26 4.26 37.12 2.87
2439 3651 3.777106 TGATGACAGCCAAGAAGTCTT 57.223 42.857 0.00 0.00 36.45 3.01
2440 3652 3.181451 TGTTGATGACAGCCAAGAAGTCT 60.181 43.478 0.00 0.00 33.40 3.24
2441 3653 3.141398 TGTTGATGACAGCCAAGAAGTC 58.859 45.455 0.00 0.00 33.40 3.01
2442 3654 3.213206 TGTTGATGACAGCCAAGAAGT 57.787 42.857 0.00 0.00 33.40 3.01
2443 3655 3.057736 CCTTGTTGATGACAGCCAAGAAG 60.058 47.826 16.64 16.64 40.90 2.85
2444 3656 2.886523 CCTTGTTGATGACAGCCAAGAA 59.113 45.455 10.21 6.91 39.94 2.52
2445 3657 2.158623 ACCTTGTTGATGACAGCCAAGA 60.159 45.455 10.21 0.05 39.94 3.02
2446 3658 2.227388 GACCTTGTTGATGACAGCCAAG 59.773 50.000 3.53 3.53 39.94 3.61
2447 3659 2.229792 GACCTTGTTGATGACAGCCAA 58.770 47.619 0.00 0.00 39.94 4.52
2448 3660 1.142667 TGACCTTGTTGATGACAGCCA 59.857 47.619 0.00 0.00 39.94 4.75
2449 3661 1.808945 CTGACCTTGTTGATGACAGCC 59.191 52.381 0.00 0.00 39.94 4.85
2450 3662 1.808945 CCTGACCTTGTTGATGACAGC 59.191 52.381 0.00 0.00 39.94 4.40
2451 3663 1.808945 GCCTGACCTTGTTGATGACAG 59.191 52.381 0.00 0.00 39.94 3.51
2452 3664 1.545428 GGCCTGACCTTGTTGATGACA 60.545 52.381 0.00 0.00 36.19 3.58
2453 3665 1.168714 GGCCTGACCTTGTTGATGAC 58.831 55.000 0.00 0.00 34.51 3.06
2454 3666 0.321564 CGGCCTGACCTTGTTGATGA 60.322 55.000 0.00 0.00 35.61 2.92
2455 3667 1.308069 CCGGCCTGACCTTGTTGATG 61.308 60.000 0.00 0.00 35.61 3.07
2456 3668 1.002134 CCGGCCTGACCTTGTTGAT 60.002 57.895 0.00 0.00 35.61 2.57
2457 3669 2.429930 CCGGCCTGACCTTGTTGA 59.570 61.111 0.00 0.00 35.61 3.18
2458 3670 3.365265 GCCGGCCTGACCTTGTTG 61.365 66.667 18.11 0.00 35.61 3.33
2459 3671 3.553095 GAGCCGGCCTGACCTTGTT 62.553 63.158 26.15 0.00 35.61 2.83
2460 3672 4.021925 GAGCCGGCCTGACCTTGT 62.022 66.667 26.15 0.00 35.61 3.16
2461 3673 2.303549 CTAGAGCCGGCCTGACCTTG 62.304 65.000 26.15 9.85 35.61 3.61
2462 3674 2.038975 TAGAGCCGGCCTGACCTT 59.961 61.111 26.15 0.94 35.61 3.50
2463 3675 1.934459 TACTAGAGCCGGCCTGACCT 61.934 60.000 26.15 14.92 35.61 3.85
2464 3676 1.455217 TACTAGAGCCGGCCTGACC 60.455 63.158 26.15 7.58 0.00 4.02
2465 3677 1.734748 GTACTAGAGCCGGCCTGAC 59.265 63.158 26.15 12.69 0.00 3.51
2466 3678 1.822613 CGTACTAGAGCCGGCCTGA 60.823 63.158 26.15 7.28 0.00 3.86
2467 3679 2.722487 CGTACTAGAGCCGGCCTG 59.278 66.667 26.15 13.45 0.00 4.85
2468 3680 2.518825 CCGTACTAGAGCCGGCCT 60.519 66.667 26.15 22.05 34.62 5.19
2469 3681 3.603671 CCCGTACTAGAGCCGGCC 61.604 72.222 26.15 15.34 40.38 6.13
2470 3682 2.517875 TCCCGTACTAGAGCCGGC 60.518 66.667 21.89 21.89 40.38 6.13
2471 3683 3.747266 CTCCCGTACTAGAGCCGG 58.253 66.667 0.00 0.00 41.37 6.13
2475 3687 1.381928 TTGCCGCTCCCGTACTAGAG 61.382 60.000 0.00 4.99 0.00 2.43
2476 3688 1.378911 TTGCCGCTCCCGTACTAGA 60.379 57.895 0.00 0.00 0.00 2.43
2477 3689 1.226888 GTTGCCGCTCCCGTACTAG 60.227 63.158 0.00 0.00 0.00 2.57
2478 3690 1.940883 CTGTTGCCGCTCCCGTACTA 61.941 60.000 0.00 0.00 0.00 1.82
2479 3691 3.296709 CTGTTGCCGCTCCCGTACT 62.297 63.158 0.00 0.00 0.00 2.73
2480 3692 2.813908 CTGTTGCCGCTCCCGTAC 60.814 66.667 0.00 0.00 0.00 3.67
2481 3693 4.752879 GCTGTTGCCGCTCCCGTA 62.753 66.667 0.00 0.00 0.00 4.02
2489 3701 1.277739 CGATATGCTGCTGTTGCCG 59.722 57.895 0.00 0.00 38.71 5.69
2490 3702 1.650912 CCGATATGCTGCTGTTGCC 59.349 57.895 0.00 0.00 38.71 4.52
2491 3703 1.009222 GCCGATATGCTGCTGTTGC 60.009 57.895 0.00 0.00 40.20 4.17
2492 3704 1.277739 CGCCGATATGCTGCTGTTG 59.722 57.895 0.00 0.00 0.00 3.33
2493 3705 1.889105 CCGCCGATATGCTGCTGTT 60.889 57.895 0.00 0.00 0.00 3.16
2494 3706 2.280389 CCGCCGATATGCTGCTGT 60.280 61.111 0.00 0.00 0.00 4.40
2495 3707 3.720193 GCCGCCGATATGCTGCTG 61.720 66.667 0.00 0.00 38.30 4.41
2496 3708 3.933722 AGCCGCCGATATGCTGCT 61.934 61.111 0.00 0.00 45.36 4.24
2497 3709 3.418068 GAGCCGCCGATATGCTGC 61.418 66.667 0.00 0.00 41.19 5.25
2498 3710 3.108289 CGAGCCGCCGATATGCTG 61.108 66.667 0.00 0.00 34.99 4.41
2499 3711 3.151958 AACGAGCCGCCGATATGCT 62.152 57.895 8.04 0.00 38.24 3.79
2500 3712 2.658707 GAACGAGCCGCCGATATGC 61.659 63.158 8.04 0.00 0.00 3.14
2501 3713 2.022129 GGAACGAGCCGCCGATATG 61.022 63.158 8.04 0.00 0.00 1.78
2502 3714 2.201022 AGGAACGAGCCGCCGATAT 61.201 57.895 8.04 0.00 0.00 1.63
2503 3715 2.831742 AGGAACGAGCCGCCGATA 60.832 61.111 8.04 0.00 0.00 2.92
2504 3716 4.514577 CAGGAACGAGCCGCCGAT 62.515 66.667 8.04 0.00 0.00 4.18
2515 3727 3.064324 ATTGCCGCAGCCAGGAAC 61.064 61.111 0.00 0.00 38.69 3.62
2516 3728 3.063704 CATTGCCGCAGCCAGGAA 61.064 61.111 0.00 0.00 38.69 3.36
2519 3731 3.376078 AACCATTGCCGCAGCCAG 61.376 61.111 0.00 0.00 38.69 4.85
2520 3732 3.682885 CAACCATTGCCGCAGCCA 61.683 61.111 0.00 0.00 38.69 4.75
2521 3733 3.225069 AACAACCATTGCCGCAGCC 62.225 57.895 0.00 0.00 38.69 4.85
2522 3734 1.734117 GAACAACCATTGCCGCAGC 60.734 57.895 0.00 0.00 40.48 5.25
2523 3735 1.442520 CGAACAACCATTGCCGCAG 60.443 57.895 0.00 0.00 0.00 5.18
2524 3736 2.642129 CGAACAACCATTGCCGCA 59.358 55.556 0.00 0.00 0.00 5.69
2525 3737 2.126502 CCGAACAACCATTGCCGC 60.127 61.111 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.