Multiple sequence alignment - TraesCS7A01G514300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G514300 chr7A 100.000 3425 0 0 1 3425 700536292 700532868 0.000000e+00 6325.0
1 TraesCS7A01G514300 chr7A 100.000 29 0 0 141 169 365076365 365076393 2.000000e-03 54.7
2 TraesCS7A01G514300 chr7D 87.489 2206 177 34 736 2862 610623711 610621526 0.000000e+00 2453.0
3 TraesCS7A01G514300 chr7D 88.109 1867 139 26 800 2601 608122522 608124370 0.000000e+00 2141.0
4 TraesCS7A01G514300 chr7D 88.095 1134 85 8 1445 2559 514346917 514345815 0.000000e+00 1301.0
5 TraesCS7A01G514300 chr7D 84.697 660 59 20 818 1453 514353626 514352985 3.750000e-174 621.0
6 TraesCS7A01G514300 chr7D 86.911 573 44 10 2047 2599 514343486 514342925 6.280000e-172 614.0
7 TraesCS7A01G514300 chr7D 85.102 537 54 13 190 707 608118139 608118668 3.030000e-145 525.0
8 TraesCS7A01G514300 chr7D 84.916 537 55 13 190 707 610648636 610648107 1.410000e-143 520.0
9 TraesCS7A01G514300 chr7D 83.478 575 57 7 2047 2601 600275343 600274787 5.100000e-138 501.0
10 TraesCS7A01G514300 chr7D 90.027 371 36 1 2585 2954 608125174 608125544 2.390000e-131 479.0
11 TraesCS7A01G514300 chr7D 86.933 375 46 3 2583 2954 600273982 600273608 5.290000e-113 418.0
12 TraesCS7A01G514300 chr7D 85.222 406 24 7 2159 2544 600278711 600278322 5.360000e-103 385.0
13 TraesCS7A01G514300 chr7D 84.239 368 49 5 2583 2949 610603494 610603135 1.960000e-92 350.0
14 TraesCS7A01G514300 chr7D 88.087 277 20 10 3155 3425 514345462 514345193 1.980000e-82 316.0
15 TraesCS7A01G514300 chr7D 86.232 276 27 8 3155 3425 600277622 600277353 4.320000e-74 289.0
16 TraesCS7A01G514300 chr7D 82.229 332 42 8 2544 2862 600277958 600277631 1.570000e-68 270.0
17 TraesCS7A01G514300 chr7D 86.222 225 13 4 3059 3265 514341739 514341515 9.560000e-56 228.0
18 TraesCS7A01G514300 chr7D 83.665 251 24 6 3191 3425 608135417 608135666 1.600000e-53 220.0
19 TraesCS7A01G514300 chr7D 85.106 188 19 6 3245 3425 514341496 514341311 2.100000e-42 183.0
20 TraesCS7A01G514300 chr7D 85.027 187 19 6 3245 3425 600273373 600273190 7.550000e-42 182.0
21 TraesCS7A01G514300 chr7D 92.241 116 9 0 2945 3060 426778678 426778563 7.600000e-37 165.0
22 TraesCS7A01G514300 chr7D 90.909 121 10 1 3155 3274 610621517 610621397 9.840000e-36 161.0
23 TraesCS7A01G514300 chr7D 83.851 161 15 7 3270 3425 610614003 610613849 3.560000e-30 143.0
24 TraesCS7A01G514300 chr7D 87.755 49 5 1 128 175 326057148 326057100 4.770000e-04 56.5
25 TraesCS7A01G514300 chr7B 86.076 2212 187 35 731 2862 695262219 695260049 0.000000e+00 2266.0
26 TraesCS7A01G514300 chr7B 86.738 2066 177 20 712 2710 698974130 698976165 0.000000e+00 2207.0
27 TraesCS7A01G514300 chr7B 91.457 1627 103 8 999 2601 684982504 684980890 0.000000e+00 2202.0
28 TraesCS7A01G514300 chr7B 86.667 2070 175 23 712 2710 693439447 693441486 0.000000e+00 2200.0
29 TraesCS7A01G514300 chr7B 84.874 2294 218 43 718 2938 694824981 694822744 0.000000e+00 2194.0
30 TraesCS7A01G514300 chr7B 86.088 1948 182 29 718 2601 698503472 698505394 0.000000e+00 2013.0
31 TraesCS7A01G514300 chr7B 89.901 1109 76 17 1517 2601 697385641 697384545 0.000000e+00 1395.0
32 TraesCS7A01G514300 chr7B 93.762 529 33 0 999 1527 697394492 697393964 0.000000e+00 795.0
33 TraesCS7A01G514300 chr7B 85.503 745 72 7 1880 2601 699157919 699158650 0.000000e+00 745.0
34 TraesCS7A01G514300 chr7B 84.946 558 58 13 190 728 698487969 698488519 3.010000e-150 542.0
35 TraesCS7A01G514300 chr7B 84.643 560 55 15 190 728 695277363 695276814 2.340000e-146 529.0
36 TraesCS7A01G514300 chr7B 87.013 462 51 7 190 645 693438633 693439091 2.360000e-141 512.0
37 TraesCS7A01G514300 chr7B 87.013 462 51 8 190 645 695263061 695262603 2.360000e-141 512.0
38 TraesCS7A01G514300 chr7B 87.013 462 51 7 190 645 698973316 698973774 2.360000e-141 512.0
39 TraesCS7A01G514300 chr7B 86.825 463 47 10 190 645 694825798 694825343 3.940000e-139 505.0
40 TraesCS7A01G514300 chr7B 90.349 373 35 1 2583 2954 699159451 699159823 3.970000e-134 488.0
41 TraesCS7A01G514300 chr7B 89.247 372 39 1 2583 2954 684980258 684979888 6.690000e-127 464.0
42 TraesCS7A01G514300 chr7B 85.281 462 52 10 190 645 698502659 698503110 2.410000e-126 462.0
43 TraesCS7A01G514300 chr7B 89.276 373 35 2 2583 2954 698506192 698506560 2.410000e-126 462.0
44 TraesCS7A01G514300 chr7B 88.978 372 40 1 2583 2954 697383894 697383524 3.110000e-125 459.0
45 TraesCS7A01G514300 chr7B 85.286 367 35 10 3059 3409 698506559 698506922 9.040000e-96 361.0
46 TraesCS7A01G514300 chr7B 85.673 342 32 7 3059 3384 697383525 697383185 9.100000e-91 344.0
47 TraesCS7A01G514300 chr7B 86.957 276 25 8 3155 3425 695260040 695259771 2.000000e-77 300.0
48 TraesCS7A01G514300 chr7B 86.486 222 15 4 3059 3265 693441694 693441915 2.660000e-56 230.0
49 TraesCS7A01G514300 chr7B 86.321 212 24 1 2743 2954 693441489 693441695 3.440000e-55 226.0
50 TraesCS7A01G514300 chr7B 86.036 222 16 4 3059 3265 694822734 694822513 1.240000e-54 224.0
51 TraesCS7A01G514300 chr7B 85.586 222 17 4 3059 3265 698976372 698976593 5.750000e-53 219.0
52 TraesCS7A01G514300 chr5A 91.964 112 9 0 2953 3064 512233576 512233465 1.270000e-34 158.0
53 TraesCS7A01G514300 chr5A 92.683 41 2 1 128 167 617920372 617920412 1.330000e-04 58.4
54 TraesCS7A01G514300 chr4B 92.727 110 7 1 2953 3061 417537564 417537455 1.270000e-34 158.0
55 TraesCS7A01G514300 chr2B 92.661 109 8 0 2953 3061 638968602 638968710 1.270000e-34 158.0
56 TraesCS7A01G514300 chr1A 92.661 109 8 0 2952 3060 586723797 586723905 1.270000e-34 158.0
57 TraesCS7A01G514300 chr2A 90.678 118 10 1 2945 3062 173127151 173127267 4.580000e-34 156.0
58 TraesCS7A01G514300 chr1D 91.228 114 9 1 2950 3062 447518148 447518261 1.650000e-33 154.0
59 TraesCS7A01G514300 chr1D 91.228 114 9 1 2950 3062 447518285 447518398 1.650000e-33 154.0
60 TraesCS7A01G514300 chr1B 90.517 116 11 0 2945 3060 610352100 610352215 1.650000e-33 154.0
61 TraesCS7A01G514300 chr2D 91.489 47 0 2 127 169 94435652 94435606 1.030000e-05 62.1
62 TraesCS7A01G514300 chrUn 92.500 40 2 1 129 167 12624913 12624874 4.770000e-04 56.5
63 TraesCS7A01G514300 chr4D 100.000 30 0 0 139 168 294461974 294462003 4.770000e-04 56.5
64 TraesCS7A01G514300 chr5D 88.889 45 3 2 128 170 441514920 441514964 2.000000e-03 54.7
65 TraesCS7A01G514300 chr6B 90.244 41 3 1 128 167 270756459 270756499 6.000000e-03 52.8
66 TraesCS7A01G514300 chr6A 100.000 28 0 0 140 167 200805075 200805048 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G514300 chr7A 700532868 700536292 3424 True 6325.000000 6325 100.000000 1 3425 1 chr7A.!!$R1 3424
1 TraesCS7A01G514300 chr7D 610621397 610623711 2314 True 1307.000000 2453 89.199000 736 3274 2 chr7D.!!$R9 2538
2 TraesCS7A01G514300 chr7D 608118139 608125544 7405 False 1048.333333 2141 87.746000 190 2954 3 chr7D.!!$F2 2764
3 TraesCS7A01G514300 chr7D 514352985 514353626 641 True 621.000000 621 84.697000 818 1453 1 chr7D.!!$R3 635
4 TraesCS7A01G514300 chr7D 514341311 514346917 5606 True 528.400000 1301 86.884200 1445 3425 5 chr7D.!!$R7 1980
5 TraesCS7A01G514300 chr7D 610648107 610648636 529 True 520.000000 520 84.916000 190 707 1 chr7D.!!$R6 517
6 TraesCS7A01G514300 chr7D 600273190 600278711 5521 True 340.833333 501 84.853500 2047 3425 6 chr7D.!!$R8 1378
7 TraesCS7A01G514300 chr7B 684979888 684982504 2616 True 1333.000000 2202 90.352000 999 2954 2 chr7B.!!$R3 1955
8 TraesCS7A01G514300 chr7B 695259771 695263061 3290 True 1026.000000 2266 86.682000 190 3425 3 chr7B.!!$R5 3235
9 TraesCS7A01G514300 chr7B 698973316 698976593 3277 False 979.333333 2207 86.445667 190 3265 3 chr7B.!!$F4 3075
10 TraesCS7A01G514300 chr7B 694822513 694825798 3285 True 974.333333 2194 85.911667 190 3265 3 chr7B.!!$R4 3075
11 TraesCS7A01G514300 chr7B 698502659 698506922 4263 False 824.500000 2013 86.482750 190 3409 4 chr7B.!!$F3 3219
12 TraesCS7A01G514300 chr7B 697393964 697394492 528 True 795.000000 795 93.762000 999 1527 1 chr7B.!!$R2 528
13 TraesCS7A01G514300 chr7B 693438633 693441915 3282 False 792.000000 2200 86.621750 190 3265 4 chr7B.!!$F2 3075
14 TraesCS7A01G514300 chr7B 697383185 697385641 2456 True 732.666667 1395 88.184000 1517 3384 3 chr7B.!!$R6 1867
15 TraesCS7A01G514300 chr7B 699157919 699159823 1904 False 616.500000 745 87.926000 1880 2954 2 chr7B.!!$F5 1074
16 TraesCS7A01G514300 chr7B 698487969 698488519 550 False 542.000000 542 84.946000 190 728 1 chr7B.!!$F1 538
17 TraesCS7A01G514300 chr7B 695276814 695277363 549 True 529.000000 529 84.643000 190 728 1 chr7B.!!$R1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.100325 TTTCTGTTGCAACGCACAGG 59.900 50.0 23.79 9.89 38.71 4.00 F
956 4783 0.179156 ATGCATGCGTGTTTAGCTGC 60.179 50.0 12.68 0.00 38.38 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 5152 0.465097 CCGAGGAGGGAGCGTAGTAA 60.465 60.0 0.0 0.0 35.97 2.24 R
2467 12684 0.178981 ACAACTTCAGCCACCATGCT 60.179 50.0 0.0 0.0 44.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.786809 CAGTGCTGGAATGCTGTTG 57.213 52.632 0.00 0.00 0.00 3.33
29 30 1.241165 CAGTGCTGGAATGCTGTTGA 58.759 50.000 0.00 0.00 0.00 3.18
30 31 1.610038 CAGTGCTGGAATGCTGTTGAA 59.390 47.619 0.00 0.00 0.00 2.69
31 32 1.610522 AGTGCTGGAATGCTGTTGAAC 59.389 47.619 0.00 0.00 0.00 3.18
32 33 1.337703 GTGCTGGAATGCTGTTGAACA 59.662 47.619 0.00 0.00 0.00 3.18
33 34 2.029649 GTGCTGGAATGCTGTTGAACAT 60.030 45.455 0.00 0.00 0.00 2.71
34 35 2.029739 TGCTGGAATGCTGTTGAACATG 60.030 45.455 0.00 0.00 0.00 3.21
35 36 2.602878 CTGGAATGCTGTTGAACATGC 58.397 47.619 0.00 5.68 0.00 4.06
36 37 1.273048 TGGAATGCTGTTGAACATGCC 59.727 47.619 14.13 3.05 41.77 4.40
37 38 1.273048 GGAATGCTGTTGAACATGCCA 59.727 47.619 14.13 6.61 41.15 4.92
38 39 2.093869 GGAATGCTGTTGAACATGCCAT 60.094 45.455 14.13 8.26 41.15 4.40
39 40 3.130869 GGAATGCTGTTGAACATGCCATA 59.869 43.478 14.13 0.99 41.15 2.74
40 41 4.381825 GGAATGCTGTTGAACATGCCATAA 60.382 41.667 14.13 0.71 41.15 1.90
41 42 3.853831 TGCTGTTGAACATGCCATAAG 57.146 42.857 14.13 0.00 0.00 1.73
42 43 3.156293 TGCTGTTGAACATGCCATAAGT 58.844 40.909 14.13 0.00 0.00 2.24
43 44 3.191162 TGCTGTTGAACATGCCATAAGTC 59.809 43.478 14.13 0.00 0.00 3.01
44 45 3.191162 GCTGTTGAACATGCCATAAGTCA 59.809 43.478 0.00 0.00 0.00 3.41
45 46 4.673580 GCTGTTGAACATGCCATAAGTCAG 60.674 45.833 0.00 0.00 0.00 3.51
46 47 4.397420 TGTTGAACATGCCATAAGTCAGT 58.603 39.130 0.00 0.00 0.00 3.41
47 48 4.216042 TGTTGAACATGCCATAAGTCAGTG 59.784 41.667 0.00 0.00 0.00 3.66
48 49 4.284829 TGAACATGCCATAAGTCAGTGA 57.715 40.909 0.00 0.00 0.00 3.41
49 50 4.847198 TGAACATGCCATAAGTCAGTGAT 58.153 39.130 0.00 0.00 0.00 3.06
50 51 4.637091 TGAACATGCCATAAGTCAGTGATG 59.363 41.667 0.00 0.00 0.00 3.07
51 52 2.947652 ACATGCCATAAGTCAGTGATGC 59.052 45.455 0.00 0.00 0.00 3.91
52 53 3.211865 CATGCCATAAGTCAGTGATGCT 58.788 45.455 0.00 0.00 0.00 3.79
53 54 3.354948 TGCCATAAGTCAGTGATGCTT 57.645 42.857 0.00 0.00 0.00 3.91
54 55 3.011818 TGCCATAAGTCAGTGATGCTTG 58.988 45.455 0.00 0.00 0.00 4.01
55 56 3.273434 GCCATAAGTCAGTGATGCTTGA 58.727 45.455 0.00 0.00 0.00 3.02
56 57 3.691118 GCCATAAGTCAGTGATGCTTGAA 59.309 43.478 0.00 0.00 0.00 2.69
57 58 4.437930 GCCATAAGTCAGTGATGCTTGAAC 60.438 45.833 0.00 0.00 0.00 3.18
58 59 4.940046 CCATAAGTCAGTGATGCTTGAACT 59.060 41.667 0.00 0.00 0.00 3.01
59 60 6.108687 CCATAAGTCAGTGATGCTTGAACTA 58.891 40.000 0.00 0.00 0.00 2.24
60 61 6.257411 CCATAAGTCAGTGATGCTTGAACTAG 59.743 42.308 0.00 0.00 0.00 2.57
61 62 5.474578 AAGTCAGTGATGCTTGAACTAGA 57.525 39.130 0.00 0.00 0.00 2.43
62 63 5.474578 AGTCAGTGATGCTTGAACTAGAA 57.525 39.130 0.00 0.00 0.00 2.10
63 64 5.858381 AGTCAGTGATGCTTGAACTAGAAA 58.142 37.500 0.00 0.00 0.00 2.52
64 65 5.698545 AGTCAGTGATGCTTGAACTAGAAAC 59.301 40.000 0.00 0.00 0.00 2.78
65 66 4.997395 TCAGTGATGCTTGAACTAGAAACC 59.003 41.667 0.00 0.00 0.00 3.27
66 67 4.756642 CAGTGATGCTTGAACTAGAAACCA 59.243 41.667 0.00 0.00 0.00 3.67
67 68 5.413833 CAGTGATGCTTGAACTAGAAACCAT 59.586 40.000 0.00 0.00 0.00 3.55
68 69 6.595326 CAGTGATGCTTGAACTAGAAACCATA 59.405 38.462 0.00 0.00 0.00 2.74
69 70 6.820656 AGTGATGCTTGAACTAGAAACCATAG 59.179 38.462 0.00 0.00 0.00 2.23
70 71 6.595716 GTGATGCTTGAACTAGAAACCATAGT 59.404 38.462 0.00 0.00 34.96 2.12
71 72 7.119846 GTGATGCTTGAACTAGAAACCATAGTT 59.880 37.037 0.00 0.00 44.21 2.24
73 74 9.162764 GATGCTTGAACTAGAAACCATAGTTTA 57.837 33.333 0.00 0.00 46.25 2.01
74 75 8.319143 TGCTTGAACTAGAAACCATAGTTTAC 57.681 34.615 0.00 0.00 46.25 2.01
75 76 7.389607 TGCTTGAACTAGAAACCATAGTTTACC 59.610 37.037 0.00 0.00 46.25 2.85
76 77 7.606839 GCTTGAACTAGAAACCATAGTTTACCT 59.393 37.037 0.00 0.00 46.25 3.08
99 100 9.838339 ACCTAATGTATGAAATAGAAGACTTGG 57.162 33.333 0.00 0.00 0.00 3.61
102 103 8.738645 AATGTATGAAATAGAAGACTTGGACC 57.261 34.615 0.00 0.00 0.00 4.46
103 104 7.496346 TGTATGAAATAGAAGACTTGGACCT 57.504 36.000 0.00 0.00 0.00 3.85
104 105 8.603898 TGTATGAAATAGAAGACTTGGACCTA 57.396 34.615 0.00 0.00 0.00 3.08
105 106 9.213777 TGTATGAAATAGAAGACTTGGACCTAT 57.786 33.333 0.00 0.00 0.00 2.57
106 107 9.482627 GTATGAAATAGAAGACTTGGACCTATG 57.517 37.037 0.00 0.00 0.00 2.23
107 108 7.733773 TGAAATAGAAGACTTGGACCTATGA 57.266 36.000 0.00 0.00 0.00 2.15
108 109 8.146053 TGAAATAGAAGACTTGGACCTATGAA 57.854 34.615 0.00 0.00 0.00 2.57
109 110 8.602424 TGAAATAGAAGACTTGGACCTATGAAA 58.398 33.333 0.00 0.00 0.00 2.69
110 111 9.620259 GAAATAGAAGACTTGGACCTATGAAAT 57.380 33.333 0.00 0.00 0.00 2.17
111 112 9.620259 AAATAGAAGACTTGGACCTATGAAATC 57.380 33.333 0.00 0.00 0.00 2.17
112 113 6.882768 AGAAGACTTGGACCTATGAAATCT 57.117 37.500 0.00 0.00 0.00 2.40
113 114 7.264294 AGAAGACTTGGACCTATGAAATCTT 57.736 36.000 0.00 0.00 0.00 2.40
114 115 7.108847 AGAAGACTTGGACCTATGAAATCTTG 58.891 38.462 0.00 0.00 0.00 3.02
115 116 6.627087 AGACTTGGACCTATGAAATCTTGA 57.373 37.500 0.00 0.00 0.00 3.02
116 117 7.020827 AGACTTGGACCTATGAAATCTTGAA 57.979 36.000 0.00 0.00 0.00 2.69
117 118 7.108847 AGACTTGGACCTATGAAATCTTGAAG 58.891 38.462 0.00 0.00 0.00 3.02
118 119 6.183347 ACTTGGACCTATGAAATCTTGAAGG 58.817 40.000 0.00 0.00 0.00 3.46
119 120 6.012508 ACTTGGACCTATGAAATCTTGAAGGA 60.013 38.462 0.00 0.00 0.00 3.36
120 121 6.581388 TGGACCTATGAAATCTTGAAGGAT 57.419 37.500 0.00 0.00 0.00 3.24
121 122 6.595682 TGGACCTATGAAATCTTGAAGGATC 58.404 40.000 0.00 0.00 0.00 3.36
122 123 6.158520 TGGACCTATGAAATCTTGAAGGATCA 59.841 38.462 0.00 0.00 0.00 2.92
123 124 7.147248 TGGACCTATGAAATCTTGAAGGATCAT 60.147 37.037 11.12 11.12 34.96 2.45
124 125 7.174599 GGACCTATGAAATCTTGAAGGATCATG 59.825 40.741 14.25 0.00 34.96 3.07
125 126 7.580910 ACCTATGAAATCTTGAAGGATCATGT 58.419 34.615 14.25 6.06 34.96 3.21
126 127 7.501559 ACCTATGAAATCTTGAAGGATCATGTG 59.498 37.037 14.25 9.60 34.96 3.21
127 128 7.718314 CCTATGAAATCTTGAAGGATCATGTGA 59.282 37.037 14.25 0.00 34.96 3.58
128 129 9.286170 CTATGAAATCTTGAAGGATCATGTGAT 57.714 33.333 14.25 0.00 34.96 3.06
129 130 7.949690 TGAAATCTTGAAGGATCATGTGATT 57.050 32.000 0.00 0.00 34.96 2.57
130 131 8.357290 TGAAATCTTGAAGGATCATGTGATTT 57.643 30.769 0.00 2.90 39.80 2.17
131 132 8.809066 TGAAATCTTGAAGGATCATGTGATTTT 58.191 29.630 0.00 0.00 38.69 1.82
132 133 9.649167 GAAATCTTGAAGGATCATGTGATTTTT 57.351 29.630 0.00 0.00 38.69 1.94
151 152 2.354109 TTTTTCTGTTGCAACGCACA 57.646 40.000 23.79 6.94 38.71 4.57
152 153 1.906757 TTTTCTGTTGCAACGCACAG 58.093 45.000 23.79 16.51 38.71 3.66
153 154 0.100325 TTTCTGTTGCAACGCACAGG 59.900 50.000 23.79 9.89 38.71 4.00
154 155 2.335052 TTCTGTTGCAACGCACAGGC 62.335 55.000 23.79 0.00 38.71 4.85
155 156 3.123523 CTGTTGCAACGCACAGGCA 62.124 57.895 23.79 3.60 38.71 4.75
156 157 2.655044 GTTGCAACGCACAGGCAC 60.655 61.111 14.90 0.00 38.71 5.01
157 158 2.828095 TTGCAACGCACAGGCACT 60.828 55.556 0.00 0.00 38.71 4.40
158 159 2.413963 TTGCAACGCACAGGCACTT 61.414 52.632 0.00 0.00 38.71 3.16
159 160 1.943116 TTGCAACGCACAGGCACTTT 61.943 50.000 0.00 0.00 38.71 2.66
160 161 1.226945 GCAACGCACAGGCACTTTT 60.227 52.632 0.00 0.00 41.24 2.27
161 162 1.481819 GCAACGCACAGGCACTTTTG 61.482 55.000 0.00 0.00 41.24 2.44
282 283 6.901300 ACAGGGTGAAGAAATCCATAGTACTA 59.099 38.462 4.77 4.77 0.00 1.82
283 284 7.147707 ACAGGGTGAAGAAATCCATAGTACTAC 60.148 40.741 4.31 0.00 0.00 2.73
284 285 6.326843 AGGGTGAAGAAATCCATAGTACTACC 59.673 42.308 4.31 0.00 0.00 3.18
358 363 2.299013 TGTGAGGAAGCGTGTGTAGAAT 59.701 45.455 0.00 0.00 0.00 2.40
359 364 2.668457 GTGAGGAAGCGTGTGTAGAATG 59.332 50.000 0.00 0.00 0.00 2.67
366 371 4.465632 AGCGTGTGTAGAATGGTAATCA 57.534 40.909 0.00 0.00 0.00 2.57
414 420 8.485976 TTGAAAAGCTAAAGATAGAAGAGCTC 57.514 34.615 5.27 5.27 42.56 4.09
415 421 7.044798 TGAAAAGCTAAAGATAGAAGAGCTCC 58.955 38.462 10.93 0.00 42.56 4.70
416 422 4.846779 AGCTAAAGATAGAAGAGCTCCG 57.153 45.455 10.93 0.00 39.22 4.63
423 429 1.934220 TAGAAGAGCTCCGTGGTGCG 61.934 60.000 10.93 0.00 39.31 5.34
438 444 0.457035 GTGCGCCATCCATGTCAATT 59.543 50.000 4.18 0.00 0.00 2.32
485 493 5.643777 ACACGAGAGGATGTGGAAATAAAAG 59.356 40.000 0.00 0.00 40.39 2.27
533 545 6.578020 AAGAAACGAACGATTTATATGCGA 57.422 33.333 0.14 0.00 0.00 5.10
539 552 8.609478 AACGAACGATTTATATGCGAAAAATT 57.391 26.923 0.14 0.00 0.00 1.82
566 579 3.282831 AGGAAGCGTGTGCAAAATAAC 57.717 42.857 0.00 0.00 46.23 1.89
576 589 5.385918 CGTGTGCAAAATAACATTTGTCGTC 60.386 40.000 0.00 0.00 41.34 4.20
579 592 4.907010 TGCAAAATAACATTTGTCGTCGTC 59.093 37.500 0.00 0.00 41.34 4.20
631 647 1.352017 TGGATGTGCACCTCATTCAGT 59.648 47.619 21.49 0.00 0.00 3.41
641 657 2.230508 ACCTCATTCAGTTTGCAGCATG 59.769 45.455 0.00 0.00 40.87 4.06
655 688 1.261354 CAGCATGCGCGTACATTATGT 59.739 47.619 13.01 2.58 45.49 2.29
669 702 2.049077 TTATGTGCTTTGCAACAGCG 57.951 45.000 20.87 4.99 41.47 5.18
687 720 3.650950 GGGCCTCCTCCACTGCAA 61.651 66.667 0.84 0.00 0.00 4.08
714 747 2.103094 TCCGCTCCTCACTCAATAATGG 59.897 50.000 0.00 0.00 0.00 3.16
742 3972 5.907207 GTGAACACCTAGATTGCAGATCTA 58.093 41.667 14.10 14.10 0.00 1.98
774 4004 2.421739 CGGAGGAGTTATGGGCCG 59.578 66.667 0.00 0.00 0.00 6.13
775 4005 2.829592 GGAGGAGTTATGGGCCGG 59.170 66.667 0.00 0.00 0.00 6.13
776 4006 2.070650 GGAGGAGTTATGGGCCGGT 61.071 63.158 1.90 0.00 0.00 5.28
785 4021 1.059584 TATGGGCCGGTGGTGATGAT 61.060 55.000 1.90 0.00 0.00 2.45
805 4044 3.565764 TGTTTCTAGATGCTGGGATGG 57.434 47.619 0.00 0.00 0.00 3.51
847 4645 1.070821 CGTAGTACGTGTCAGACCGA 58.929 55.000 14.62 0.88 36.74 4.69
901 4716 4.025480 TCGTTTACCTCACGCTTTTCTTTC 60.025 41.667 0.00 0.00 37.57 2.62
906 4721 2.618709 CCTCACGCTTTTCTTTCCTGTT 59.381 45.455 0.00 0.00 0.00 3.16
915 4733 4.706842 TTTCTTTCCTGTTGCTCCTACT 57.293 40.909 0.00 0.00 0.00 2.57
920 4738 2.307768 TCCTGTTGCTCCTACTATCCG 58.692 52.381 0.00 0.00 0.00 4.18
925 4744 2.688958 GTTGCTCCTACTATCCGTCTGT 59.311 50.000 0.00 0.00 0.00 3.41
953 4780 2.708514 CAGTATGCATGCGTGTTTAGC 58.291 47.619 22.77 5.65 0.00 3.09
954 4781 2.352651 CAGTATGCATGCGTGTTTAGCT 59.647 45.455 22.77 7.69 35.28 3.32
955 4782 2.352651 AGTATGCATGCGTGTTTAGCTG 59.647 45.455 22.77 0.00 35.28 4.24
956 4783 0.179156 ATGCATGCGTGTTTAGCTGC 60.179 50.000 12.68 0.00 38.38 5.25
957 4784 1.514873 GCATGCGTGTTTAGCTGCC 60.515 57.895 0.00 0.00 34.82 4.85
958 4785 1.226101 CATGCGTGTTTAGCTGCCG 60.226 57.895 0.00 0.00 35.28 5.69
959 4786 1.375396 ATGCGTGTTTAGCTGCCGA 60.375 52.632 0.00 0.00 35.28 5.54
960 4787 0.744414 ATGCGTGTTTAGCTGCCGAT 60.744 50.000 0.00 0.00 35.28 4.18
990 4820 1.278127 GCAAGGGGACACACTAGCTAA 59.722 52.381 0.00 0.00 0.00 3.09
993 4823 1.900486 AGGGGACACACTAGCTAACAC 59.100 52.381 0.00 0.00 0.00 3.32
994 4824 1.403780 GGGGACACACTAGCTAACACG 60.404 57.143 0.00 0.00 0.00 4.49
995 4825 1.403780 GGGACACACTAGCTAACACGG 60.404 57.143 0.00 0.00 0.00 4.94
996 4826 1.271656 GGACACACTAGCTAACACGGT 59.728 52.381 0.00 0.00 0.00 4.83
1044 4908 4.803426 CTCACGAGCTCCGGTGCC 62.803 72.222 24.18 14.63 43.93 5.01
1221 5085 2.038813 TCCATCAGCGACCTCCCA 59.961 61.111 0.00 0.00 0.00 4.37
1288 5152 1.372997 CTGCCACAACTACGCGACT 60.373 57.895 15.93 0.00 0.00 4.18
1307 5171 0.465097 TTACTACGCTCCCTCCTCGG 60.465 60.000 0.00 0.00 0.00 4.63
1582 5448 1.226974 CCCGTGTACGAGCTCATGG 60.227 63.158 15.40 9.39 43.02 3.66
1593 5459 2.711922 GCTCATGGTCGACCTCGGT 61.712 63.158 33.39 15.20 40.29 4.69
1641 5507 1.667830 CGTCAACACCATGGACGCT 60.668 57.895 21.47 0.00 46.25 5.07
1686 5552 3.312421 CGTTCCAAGAGCTTTCTGACAAA 59.688 43.478 0.00 0.00 0.00 2.83
1768 5634 2.282040 AGGTCAAGCACAGCTGCC 60.282 61.111 15.27 4.75 45.53 4.85
1905 5771 0.545548 AGAGGTTCCTCTGGGTGGTC 60.546 60.000 19.12 0.00 41.37 4.02
1935 5801 2.358003 GACAAGGACAGCAGCGCT 60.358 61.111 2.64 2.64 40.77 5.92
1956 5822 1.814527 CTACCTCGGTACTGCCACC 59.185 63.158 0.00 0.00 36.97 4.61
1964 5830 2.598099 TACTGCCACCACCGACGA 60.598 61.111 0.00 0.00 0.00 4.20
2006 5882 1.979897 GAAGGGTTCGTCGAGAGAAC 58.020 55.000 19.72 19.72 45.01 3.01
2010 5886 1.335324 GGGTTCGTCGAGAGAACGAAA 60.335 52.381 20.59 2.46 46.57 3.46
2238 6114 2.453054 AGGCCTCCCCTCGGTAAA 59.547 61.111 0.00 0.00 41.21 2.01
2247 6123 1.601419 CCCTCGGTAAAGACGGAGCA 61.601 60.000 7.03 0.00 46.52 4.26
2248 6124 0.245539 CCTCGGTAAAGACGGAGCAA 59.754 55.000 7.03 0.00 46.52 3.91
2259 6135 2.435938 GGAGCAATTGTCCCGCGA 60.436 61.111 8.23 0.00 0.00 5.87
2421 12638 2.432628 CGGAAGAGCCACGGTGAC 60.433 66.667 10.28 0.00 35.94 3.67
2436 12653 1.135333 GGTGACTAAAGAGGAGGCTCG 59.865 57.143 8.69 0.00 0.00 5.03
2440 12657 2.292292 GACTAAAGAGGAGGCTCGCTAG 59.708 54.545 8.69 6.37 0.00 3.42
2441 12658 2.303175 CTAAAGAGGAGGCTCGCTAGT 58.697 52.381 8.69 3.41 0.00 2.57
2442 12659 1.562783 AAAGAGGAGGCTCGCTAGTT 58.437 50.000 8.69 2.08 0.00 2.24
2443 12660 0.820871 AAGAGGAGGCTCGCTAGTTG 59.179 55.000 8.69 0.00 0.00 3.16
2444 12661 1.227118 GAGGAGGCTCGCTAGTTGC 60.227 63.158 8.69 0.00 38.57 4.17
2445 12662 1.671901 GAGGAGGCTCGCTAGTTGCT 61.672 60.000 8.69 0.00 40.11 3.91
2446 12663 1.227118 GGAGGCTCGCTAGTTGCTC 60.227 63.158 8.69 0.00 40.11 4.26
2447 12664 1.227118 GAGGCTCGCTAGTTGCTCC 60.227 63.158 0.00 0.00 40.11 4.70
2448 12665 2.202946 GGCTCGCTAGTTGCTCCC 60.203 66.667 0.00 0.00 40.11 4.30
2449 12666 2.726351 GGCTCGCTAGTTGCTCCCT 61.726 63.158 0.00 0.00 40.11 4.20
2450 12667 1.392710 GGCTCGCTAGTTGCTCCCTA 61.393 60.000 0.00 0.00 40.11 3.53
2451 12668 0.460311 GCTCGCTAGTTGCTCCCTAA 59.540 55.000 0.00 0.00 40.11 2.69
2452 12669 1.537135 GCTCGCTAGTTGCTCCCTAAG 60.537 57.143 0.00 0.00 40.11 2.18
2485 12702 0.963962 AAGCATGGTGGCTGAAGTTG 59.036 50.000 0.00 0.00 45.07 3.16
2625 14539 6.901081 AATTGTCCTAAGGGAAAAGAAGTG 57.099 37.500 0.00 0.00 41.68 3.16
2710 14640 6.259608 CAGGTGAGTAATCAAATCTAAGCCAG 59.740 42.308 0.00 0.00 0.00 4.85
2715 14645 7.992608 TGAGTAATCAAATCTAAGCCAGCAATA 59.007 33.333 0.00 0.00 0.00 1.90
2746 14676 6.183360 GGGAGAGAATTTGACATCAGAAATGG 60.183 42.308 0.00 0.00 0.00 3.16
2843 14777 6.487960 TCAGCAAAAACAAAATGCAGAAATG 58.512 32.000 0.00 0.00 42.45 2.32
2844 14778 5.172411 CAGCAAAAACAAAATGCAGAAATGC 59.828 36.000 0.00 0.00 42.45 3.56
2918 14852 2.409948 AGGCTAACAGAATGGCAGAC 57.590 50.000 0.00 0.00 43.62 3.51
2978 14913 8.392372 ACTCCCTCTGTTTATTTTTGTAAGAC 57.608 34.615 0.00 0.00 0.00 3.01
2979 14914 7.172703 ACTCCCTCTGTTTATTTTTGTAAGACG 59.827 37.037 0.00 0.00 0.00 4.18
2980 14915 6.993902 TCCCTCTGTTTATTTTTGTAAGACGT 59.006 34.615 0.00 0.00 0.00 4.34
2981 14916 7.499895 TCCCTCTGTTTATTTTTGTAAGACGTT 59.500 33.333 0.00 0.00 0.00 3.99
2982 14917 8.132995 CCCTCTGTTTATTTTTGTAAGACGTTT 58.867 33.333 0.00 0.00 0.00 3.60
2983 14918 9.511144 CCTCTGTTTATTTTTGTAAGACGTTTT 57.489 29.630 0.00 0.00 0.00 2.43
3003 14938 9.939802 ACGTTTTAGACATTTAAGATAAGACCT 57.060 29.630 0.00 0.00 0.00 3.85
3022 14957 7.881775 AGACCTAAAACAGTTCAATTTCAGT 57.118 32.000 0.00 0.00 0.00 3.41
3023 14958 8.293699 AGACCTAAAACAGTTCAATTTCAGTT 57.706 30.769 0.00 0.00 0.00 3.16
3024 14959 8.190784 AGACCTAAAACAGTTCAATTTCAGTTG 58.809 33.333 0.00 0.00 0.00 3.16
3025 14960 7.836842 ACCTAAAACAGTTCAATTTCAGTTGT 58.163 30.769 0.00 0.00 0.00 3.32
3026 14961 7.973944 ACCTAAAACAGTTCAATTTCAGTTGTC 59.026 33.333 0.00 0.00 0.00 3.18
3027 14962 8.190784 CCTAAAACAGTTCAATTTCAGTTGTCT 58.809 33.333 0.00 0.00 0.00 3.41
3030 14965 9.921637 AAAACAGTTCAATTTCAGTTGTCTAAA 57.078 25.926 0.00 0.00 0.00 1.85
3031 14966 9.921637 AAACAGTTCAATTTCAGTTGTCTAAAA 57.078 25.926 0.00 0.00 0.00 1.52
3032 14967 8.911247 ACAGTTCAATTTCAGTTGTCTAAAAC 57.089 30.769 0.00 0.00 0.00 2.43
3033 14968 7.696453 ACAGTTCAATTTCAGTTGTCTAAAACG 59.304 33.333 0.00 0.00 35.13 3.60
3034 14969 7.696453 CAGTTCAATTTCAGTTGTCTAAAACGT 59.304 33.333 0.00 0.00 35.13 3.99
3035 14970 7.908601 AGTTCAATTTCAGTTGTCTAAAACGTC 59.091 33.333 0.00 0.00 35.13 4.34
3036 14971 7.548196 TCAATTTCAGTTGTCTAAAACGTCT 57.452 32.000 0.00 0.00 35.13 4.18
3037 14972 7.981142 TCAATTTCAGTTGTCTAAAACGTCTT 58.019 30.769 0.00 0.00 35.13 3.01
3038 14973 9.100554 TCAATTTCAGTTGTCTAAAACGTCTTA 57.899 29.630 0.00 0.00 35.13 2.10
3039 14974 9.155053 CAATTTCAGTTGTCTAAAACGTCTTAC 57.845 33.333 0.00 0.00 35.13 2.34
3040 14975 7.830940 TTTCAGTTGTCTAAAACGTCTTACA 57.169 32.000 0.00 0.00 35.13 2.41
3041 14976 7.830940 TTCAGTTGTCTAAAACGTCTTACAA 57.169 32.000 0.00 0.00 35.13 2.41
3042 14977 7.830940 TCAGTTGTCTAAAACGTCTTACAAA 57.169 32.000 0.00 0.00 35.13 2.83
3043 14978 8.254178 TCAGTTGTCTAAAACGTCTTACAAAA 57.746 30.769 0.00 0.00 35.13 2.44
3044 14979 8.719648 TCAGTTGTCTAAAACGTCTTACAAAAA 58.280 29.630 0.00 0.00 35.13 1.94
3045 14980 9.498307 CAGTTGTCTAAAACGTCTTACAAAAAT 57.502 29.630 0.00 0.00 35.13 1.82
3046 14981 9.498307 AGTTGTCTAAAACGTCTTACAAAAATG 57.502 29.630 0.00 0.00 35.13 2.32
3047 14982 9.493206 GTTGTCTAAAACGTCTTACAAAAATGA 57.507 29.630 0.00 0.00 0.00 2.57
3049 14984 9.493206 TGTCTAAAACGTCTTACAAAAATGAAC 57.507 29.630 0.00 0.00 0.00 3.18
3050 14985 9.493206 GTCTAAAACGTCTTACAAAAATGAACA 57.507 29.630 0.00 0.00 0.00 3.18
3051 14986 9.710979 TCTAAAACGTCTTACAAAAATGAACAG 57.289 29.630 0.00 0.00 0.00 3.16
3052 14987 9.710979 CTAAAACGTCTTACAAAAATGAACAGA 57.289 29.630 0.00 0.00 0.00 3.41
3053 14988 8.614994 AAAACGTCTTACAAAAATGAACAGAG 57.385 30.769 0.00 0.00 0.00 3.35
3054 14989 6.300354 ACGTCTTACAAAAATGAACAGAGG 57.700 37.500 0.00 0.00 0.00 3.69
3055 14990 5.238650 ACGTCTTACAAAAATGAACAGAGGG 59.761 40.000 0.00 0.00 0.00 4.30
3056 14991 5.468746 CGTCTTACAAAAATGAACAGAGGGA 59.531 40.000 0.00 0.00 0.00 4.20
3057 14992 6.347725 CGTCTTACAAAAATGAACAGAGGGAG 60.348 42.308 0.00 0.00 0.00 4.30
3113 15048 9.675464 TTACTGGAAAAGAAGAAAGTAGAAACA 57.325 29.630 0.00 0.00 0.00 2.83
3124 15059 3.487120 AGTAGAAACACACCTCCAACC 57.513 47.619 0.00 0.00 0.00 3.77
3140 15075 0.968393 AACCGGTGTGGCACAAAAGT 60.968 50.000 23.90 16.20 44.16 2.66
3179 15119 1.879380 TGAGTGCAATCCTTTCCAACG 59.121 47.619 12.27 0.00 0.00 4.10
3180 15120 1.200020 GAGTGCAATCCTTTCCAACGG 59.800 52.381 1.86 0.00 0.00 4.44
3209 15157 7.278646 TCTGCATAGATCAACAATGTAGTCAAC 59.721 37.037 0.00 0.00 35.58 3.18
3218 15166 9.647797 ATCAACAATGTAGTCAACGTATAAAGA 57.352 29.630 0.00 0.00 0.00 2.52
3238 15196 3.708631 AGAGGACTCCAACTATCCATGTG 59.291 47.826 0.00 0.00 34.73 3.21
3332 15371 8.342634 CACCAACTTTTCTAATTATCATACGGG 58.657 37.037 0.00 0.00 0.00 5.28
3333 15372 8.269317 ACCAACTTTTCTAATTATCATACGGGA 58.731 33.333 0.00 0.00 0.00 5.14
3334 15373 8.557029 CCAACTTTTCTAATTATCATACGGGAC 58.443 37.037 0.00 0.00 0.00 4.46
3335 15374 9.104965 CAACTTTTCTAATTATCATACGGGACA 57.895 33.333 0.00 0.00 0.00 4.02
3337 15376 8.262227 ACTTTTCTAATTATCATACGGGACACA 58.738 33.333 0.00 0.00 0.00 3.72
3359 15398 7.230510 ACACACAACATGCTCTCCTTTTAATTA 59.769 33.333 0.00 0.00 0.00 1.40
3413 15458 7.148820 CCATGAAAATGTGAATAAAACCACGTC 60.149 37.037 0.00 0.00 36.15 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.241165 TCAACAGCATTCCAGCACTG 58.759 50.000 0.00 0.00 36.85 3.66
11 12 1.610522 GTTCAACAGCATTCCAGCACT 59.389 47.619 0.00 0.00 36.85 4.40
12 13 1.337703 TGTTCAACAGCATTCCAGCAC 59.662 47.619 0.00 0.00 36.85 4.40
13 14 1.689984 TGTTCAACAGCATTCCAGCA 58.310 45.000 0.00 0.00 36.85 4.41
14 15 2.602878 CATGTTCAACAGCATTCCAGC 58.397 47.619 0.00 0.00 0.00 4.85
15 16 2.602878 GCATGTTCAACAGCATTCCAG 58.397 47.619 0.00 0.00 0.00 3.86
16 17 1.273048 GGCATGTTCAACAGCATTCCA 59.727 47.619 12.24 0.00 30.56 3.53
17 18 1.273048 TGGCATGTTCAACAGCATTCC 59.727 47.619 12.24 2.94 0.00 3.01
18 19 2.728690 TGGCATGTTCAACAGCATTC 57.271 45.000 12.24 0.00 0.00 2.67
19 20 4.221262 ACTTATGGCATGTTCAACAGCATT 59.779 37.500 10.98 3.88 0.00 3.56
20 21 3.765511 ACTTATGGCATGTTCAACAGCAT 59.234 39.130 10.98 7.65 0.00 3.79
21 22 3.156293 ACTTATGGCATGTTCAACAGCA 58.844 40.909 10.98 2.22 0.00 4.41
22 23 3.191162 TGACTTATGGCATGTTCAACAGC 59.809 43.478 10.98 0.00 0.00 4.40
23 24 4.456911 ACTGACTTATGGCATGTTCAACAG 59.543 41.667 10.98 13.33 0.00 3.16
24 25 4.216042 CACTGACTTATGGCATGTTCAACA 59.784 41.667 10.98 0.00 0.00 3.33
25 26 4.455533 TCACTGACTTATGGCATGTTCAAC 59.544 41.667 10.98 0.00 0.00 3.18
26 27 4.650734 TCACTGACTTATGGCATGTTCAA 58.349 39.130 10.98 0.00 0.00 2.69
27 28 4.284829 TCACTGACTTATGGCATGTTCA 57.715 40.909 10.98 8.59 0.00 3.18
28 29 4.497006 GCATCACTGACTTATGGCATGTTC 60.497 45.833 10.98 4.13 0.00 3.18
29 30 3.379372 GCATCACTGACTTATGGCATGTT 59.621 43.478 10.98 0.00 0.00 2.71
30 31 2.947652 GCATCACTGACTTATGGCATGT 59.052 45.455 10.98 0.00 0.00 3.21
31 32 3.211865 AGCATCACTGACTTATGGCATG 58.788 45.455 10.98 0.00 0.00 4.06
32 33 3.572632 AGCATCACTGACTTATGGCAT 57.427 42.857 4.88 4.88 0.00 4.40
33 34 3.011818 CAAGCATCACTGACTTATGGCA 58.988 45.455 0.00 0.00 0.00 4.92
34 35 3.273434 TCAAGCATCACTGACTTATGGC 58.727 45.455 0.00 0.00 0.00 4.40
35 36 4.940046 AGTTCAAGCATCACTGACTTATGG 59.060 41.667 0.00 0.00 0.00 2.74
36 37 7.038048 TCTAGTTCAAGCATCACTGACTTATG 58.962 38.462 0.00 0.00 0.00 1.90
37 38 7.175347 TCTAGTTCAAGCATCACTGACTTAT 57.825 36.000 0.00 0.00 0.00 1.73
38 39 6.590234 TCTAGTTCAAGCATCACTGACTTA 57.410 37.500 0.00 0.00 0.00 2.24
39 40 5.474578 TCTAGTTCAAGCATCACTGACTT 57.525 39.130 0.00 0.00 0.00 3.01
40 41 5.474578 TTCTAGTTCAAGCATCACTGACT 57.525 39.130 0.00 0.00 0.00 3.41
41 42 5.106908 GGTTTCTAGTTCAAGCATCACTGAC 60.107 44.000 0.00 0.00 0.00 3.51
42 43 4.997395 GGTTTCTAGTTCAAGCATCACTGA 59.003 41.667 0.00 0.00 0.00 3.41
43 44 4.756642 TGGTTTCTAGTTCAAGCATCACTG 59.243 41.667 0.00 0.00 0.00 3.66
44 45 4.973168 TGGTTTCTAGTTCAAGCATCACT 58.027 39.130 0.00 0.00 0.00 3.41
45 46 5.886960 ATGGTTTCTAGTTCAAGCATCAC 57.113 39.130 9.50 0.00 36.60 3.06
46 47 6.711277 ACTATGGTTTCTAGTTCAAGCATCA 58.289 36.000 15.33 6.63 40.63 3.07
47 48 7.617041 AACTATGGTTTCTAGTTCAAGCATC 57.383 36.000 15.33 0.00 40.63 3.91
48 49 8.947115 GTAAACTATGGTTTCTAGTTCAAGCAT 58.053 33.333 10.79 15.85 43.62 3.79
49 50 7.389607 GGTAAACTATGGTTTCTAGTTCAAGCA 59.610 37.037 10.79 6.47 43.62 3.91
50 51 7.606839 AGGTAAACTATGGTTTCTAGTTCAAGC 59.393 37.037 10.79 1.12 43.62 4.01
73 74 9.838339 CCAAGTCTTCTATTTCATACATTAGGT 57.162 33.333 0.00 0.00 0.00 3.08
76 77 9.832445 GGTCCAAGTCTTCTATTTCATACATTA 57.168 33.333 0.00 0.00 0.00 1.90
77 78 8.552296 AGGTCCAAGTCTTCTATTTCATACATT 58.448 33.333 0.00 0.00 0.00 2.71
78 79 8.095452 AGGTCCAAGTCTTCTATTTCATACAT 57.905 34.615 0.00 0.00 0.00 2.29
79 80 7.496346 AGGTCCAAGTCTTCTATTTCATACA 57.504 36.000 0.00 0.00 0.00 2.29
80 81 9.482627 CATAGGTCCAAGTCTTCTATTTCATAC 57.517 37.037 0.00 0.00 0.00 2.39
81 82 9.434275 TCATAGGTCCAAGTCTTCTATTTCATA 57.566 33.333 0.00 0.00 0.00 2.15
82 83 8.324191 TCATAGGTCCAAGTCTTCTATTTCAT 57.676 34.615 0.00 0.00 0.00 2.57
83 84 7.733773 TCATAGGTCCAAGTCTTCTATTTCA 57.266 36.000 0.00 0.00 0.00 2.69
84 85 9.620259 ATTTCATAGGTCCAAGTCTTCTATTTC 57.380 33.333 0.00 0.00 0.00 2.17
85 86 9.620259 GATTTCATAGGTCCAAGTCTTCTATTT 57.380 33.333 0.00 0.00 0.00 1.40
86 87 8.997734 AGATTTCATAGGTCCAAGTCTTCTATT 58.002 33.333 0.00 0.00 0.00 1.73
87 88 8.560124 AGATTTCATAGGTCCAAGTCTTCTAT 57.440 34.615 0.00 0.00 0.00 1.98
88 89 7.979786 AGATTTCATAGGTCCAAGTCTTCTA 57.020 36.000 0.00 0.00 0.00 2.10
89 90 6.882768 AGATTTCATAGGTCCAAGTCTTCT 57.117 37.500 0.00 0.00 0.00 2.85
90 91 7.106239 TCAAGATTTCATAGGTCCAAGTCTTC 58.894 38.462 0.00 0.00 0.00 2.87
91 92 7.020827 TCAAGATTTCATAGGTCCAAGTCTT 57.979 36.000 0.00 0.00 0.00 3.01
92 93 6.627087 TCAAGATTTCATAGGTCCAAGTCT 57.373 37.500 0.00 0.00 0.00 3.24
93 94 6.317391 CCTTCAAGATTTCATAGGTCCAAGTC 59.683 42.308 0.00 0.00 0.00 3.01
94 95 6.012508 TCCTTCAAGATTTCATAGGTCCAAGT 60.013 38.462 0.00 0.00 0.00 3.16
95 96 6.418101 TCCTTCAAGATTTCATAGGTCCAAG 58.582 40.000 0.00 0.00 0.00 3.61
96 97 6.387192 TCCTTCAAGATTTCATAGGTCCAA 57.613 37.500 0.00 0.00 0.00 3.53
97 98 6.158520 TGATCCTTCAAGATTTCATAGGTCCA 59.841 38.462 0.00 0.00 0.00 4.02
98 99 6.595682 TGATCCTTCAAGATTTCATAGGTCC 58.404 40.000 0.00 0.00 0.00 4.46
99 100 7.718753 ACATGATCCTTCAAGATTTCATAGGTC 59.281 37.037 0.00 0.00 34.96 3.85
100 101 7.501559 CACATGATCCTTCAAGATTTCATAGGT 59.498 37.037 0.00 0.00 34.96 3.08
101 102 7.718314 TCACATGATCCTTCAAGATTTCATAGG 59.282 37.037 0.00 0.00 34.96 2.57
102 103 8.672823 TCACATGATCCTTCAAGATTTCATAG 57.327 34.615 0.00 0.00 34.96 2.23
103 104 9.636789 AATCACATGATCCTTCAAGATTTCATA 57.363 29.630 0.00 0.00 34.96 2.15
104 105 8.534954 AATCACATGATCCTTCAAGATTTCAT 57.465 30.769 0.00 0.00 34.96 2.57
105 106 7.949690 AATCACATGATCCTTCAAGATTTCA 57.050 32.000 0.00 0.00 34.96 2.69
106 107 9.649167 AAAAATCACATGATCCTTCAAGATTTC 57.351 29.630 0.00 0.00 38.97 2.17
132 133 2.257894 CTGTGCGTTGCAACAGAAAAA 58.742 42.857 28.01 8.21 41.47 1.94
133 134 1.468908 CCTGTGCGTTGCAACAGAAAA 60.469 47.619 28.01 10.65 41.47 2.29
134 135 0.100325 CCTGTGCGTTGCAACAGAAA 59.900 50.000 28.01 8.77 41.47 2.52
135 136 1.726865 CCTGTGCGTTGCAACAGAA 59.273 52.632 28.01 13.44 41.47 3.02
136 137 2.833533 GCCTGTGCGTTGCAACAGA 61.834 57.895 28.01 11.66 41.47 3.41
137 138 2.353839 GCCTGTGCGTTGCAACAG 60.354 61.111 28.01 20.60 41.47 3.16
138 139 3.136791 TGCCTGTGCGTTGCAACA 61.137 55.556 28.01 9.56 41.47 3.33
139 140 2.612219 AAGTGCCTGTGCGTTGCAAC 62.612 55.000 19.89 19.89 41.47 4.17
140 141 1.943116 AAAGTGCCTGTGCGTTGCAA 61.943 50.000 0.00 0.00 41.47 4.08
141 142 1.943116 AAAAGTGCCTGTGCGTTGCA 61.943 50.000 0.00 0.00 41.78 4.08
142 143 1.226945 AAAAGTGCCTGTGCGTTGC 60.227 52.632 0.00 0.00 41.78 4.17
143 144 1.481819 GCAAAAGTGCCTGTGCGTTG 61.482 55.000 0.00 0.00 45.68 4.10
144 145 1.226945 GCAAAAGTGCCTGTGCGTT 60.227 52.632 0.00 0.00 45.68 4.84
145 146 2.412937 GCAAAAGTGCCTGTGCGT 59.587 55.556 0.00 0.00 45.68 5.24
173 174 9.667107 TCACGAGAGATGGAAAATTTATAGTTT 57.333 29.630 0.00 0.00 0.00 2.66
174 175 9.099454 GTCACGAGAGATGGAAAATTTATAGTT 57.901 33.333 0.00 0.00 0.00 2.24
175 176 8.258007 TGTCACGAGAGATGGAAAATTTATAGT 58.742 33.333 0.00 0.00 0.00 2.12
176 177 8.648557 TGTCACGAGAGATGGAAAATTTATAG 57.351 34.615 0.00 0.00 0.00 1.31
177 178 8.879759 GTTGTCACGAGAGATGGAAAATTTATA 58.120 33.333 0.00 0.00 0.00 0.98
178 179 7.607991 AGTTGTCACGAGAGATGGAAAATTTAT 59.392 33.333 0.00 0.00 0.00 1.40
179 180 6.934645 AGTTGTCACGAGAGATGGAAAATTTA 59.065 34.615 0.00 0.00 0.00 1.40
180 181 5.765182 AGTTGTCACGAGAGATGGAAAATTT 59.235 36.000 0.00 0.00 0.00 1.82
181 182 5.180117 CAGTTGTCACGAGAGATGGAAAATT 59.820 40.000 0.00 0.00 0.00 1.82
182 183 4.692625 CAGTTGTCACGAGAGATGGAAAAT 59.307 41.667 0.00 0.00 0.00 1.82
183 184 4.058124 CAGTTGTCACGAGAGATGGAAAA 58.942 43.478 0.00 0.00 0.00 2.29
184 185 3.320826 TCAGTTGTCACGAGAGATGGAAA 59.679 43.478 0.00 0.00 0.00 3.13
185 186 2.890945 TCAGTTGTCACGAGAGATGGAA 59.109 45.455 0.00 0.00 0.00 3.53
186 187 2.514803 TCAGTTGTCACGAGAGATGGA 58.485 47.619 0.00 0.00 0.00 3.41
187 188 3.303881 TTCAGTTGTCACGAGAGATGG 57.696 47.619 0.00 0.00 0.00 3.51
188 189 6.951256 TTAATTCAGTTGTCACGAGAGATG 57.049 37.500 0.00 0.00 0.00 2.90
196 197 7.812669 CCCAACCTTAATTAATTCAGTTGTCAC 59.187 37.037 22.95 0.00 0.00 3.67
230 231 1.604604 GGTGTGAAGGCTTGCAAGTA 58.395 50.000 26.55 6.83 0.00 2.24
282 283 6.208994 GTGATATAGGAGTGAGTATTTCCGGT 59.791 42.308 0.00 0.00 36.11 5.28
283 284 6.434652 AGTGATATAGGAGTGAGTATTTCCGG 59.565 42.308 0.00 0.00 36.11 5.14
284 285 7.455641 AGTGATATAGGAGTGAGTATTTCCG 57.544 40.000 0.00 0.00 36.11 4.30
327 330 2.416547 CGCTTCCTCACACATTTTCGAT 59.583 45.455 0.00 0.00 0.00 3.59
335 338 0.747852 TACACACGCTTCCTCACACA 59.252 50.000 0.00 0.00 0.00 3.72
336 339 1.000607 TCTACACACGCTTCCTCACAC 60.001 52.381 0.00 0.00 0.00 3.82
337 340 1.324383 TCTACACACGCTTCCTCACA 58.676 50.000 0.00 0.00 0.00 3.58
338 341 2.433868 TTCTACACACGCTTCCTCAC 57.566 50.000 0.00 0.00 0.00 3.51
339 342 2.353704 CCATTCTACACACGCTTCCTCA 60.354 50.000 0.00 0.00 0.00 3.86
358 363 6.228616 TGGAGATAACAACGATGATTACCA 57.771 37.500 0.00 0.00 0.00 3.25
359 364 7.730364 AATGGAGATAACAACGATGATTACC 57.270 36.000 0.00 0.00 0.00 2.85
366 371 8.258007 TCAAGACTTAATGGAGATAACAACGAT 58.742 33.333 0.00 0.00 0.00 3.73
395 401 4.037446 CACGGAGCTCTTCTATCTTTAGCT 59.963 45.833 14.64 0.00 45.82 3.32
406 412 2.811317 CGCACCACGGAGCTCTTC 60.811 66.667 14.64 0.00 38.44 2.87
423 429 6.152932 ACTTAATGAATTGACATGGATGGC 57.847 37.500 0.00 0.00 35.98 4.40
438 444 9.339850 GTGTACTATCTACTCAGGACTTAATGA 57.660 37.037 0.00 0.00 0.00 2.57
485 493 7.795431 TGCGAAGAACAACATTATCATTTTC 57.205 32.000 0.00 0.00 0.00 2.29
505 517 3.595709 AAATCGTTCGTTTCTTTGCGA 57.404 38.095 0.00 0.00 35.17 5.10
506 518 6.343155 GCATATAAATCGTTCGTTTCTTTGCG 60.343 38.462 0.00 0.00 0.00 4.85
533 545 4.583073 ACACGCTTCCTTCCACTAATTTTT 59.417 37.500 0.00 0.00 0.00 1.94
539 552 0.320421 GCACACGCTTCCTTCCACTA 60.320 55.000 0.00 0.00 34.30 2.74
566 579 3.822996 AGACACTAGACGACGACAAATG 58.177 45.455 0.00 0.00 0.00 2.32
576 589 8.215792 CGTTATATCTACTCAAGACACTAGACG 58.784 40.741 0.00 0.00 36.93 4.18
579 592 9.043079 TCACGTTATATCTACTCAAGACACTAG 57.957 37.037 0.00 0.00 36.93 2.57
631 647 1.921045 ATGTACGCGCATGCTGCAAA 61.921 50.000 26.07 14.94 45.36 3.68
641 657 2.101125 CAAAGCACATAATGTACGCGC 58.899 47.619 5.73 0.00 0.00 6.86
642 658 2.101125 GCAAAGCACATAATGTACGCG 58.899 47.619 3.53 3.53 0.00 6.01
643 659 3.129852 TGCAAAGCACATAATGTACGC 57.870 42.857 0.00 0.00 31.71 4.42
644 660 4.471373 TGTTGCAAAGCACATAATGTACG 58.529 39.130 0.00 0.00 38.71 3.67
645 661 4.324402 GCTGTTGCAAAGCACATAATGTAC 59.676 41.667 21.23 0.00 38.71 2.90
646 662 4.484236 GCTGTTGCAAAGCACATAATGTA 58.516 39.130 21.23 0.00 38.71 2.29
650 666 1.335780 CCGCTGTTGCAAAGCACATAA 60.336 47.619 23.83 0.00 40.86 1.90
655 688 3.604667 CCCCGCTGTTGCAAAGCA 61.605 61.111 23.83 10.81 40.86 3.91
714 747 2.359900 CAATCTAGGTGTTCACCCTGC 58.640 52.381 17.06 0.00 33.35 4.85
742 3972 2.032860 CTCCGGCAATCCCATCGTCT 62.033 60.000 0.00 0.00 0.00 4.18
773 4003 4.123497 TCTAGAAACATCATCACCACCG 57.877 45.455 0.00 0.00 0.00 4.94
774 4004 4.274459 GCATCTAGAAACATCATCACCACC 59.726 45.833 0.00 0.00 0.00 4.61
775 4005 5.007430 CAGCATCTAGAAACATCATCACCAC 59.993 44.000 0.00 0.00 0.00 4.16
776 4006 5.121105 CAGCATCTAGAAACATCATCACCA 58.879 41.667 0.00 0.00 0.00 4.17
785 4021 2.173356 CCCATCCCAGCATCTAGAAACA 59.827 50.000 0.00 0.00 0.00 2.83
805 4044 2.836360 CATGCATGGGGCCTCACC 60.836 66.667 19.40 1.85 43.89 4.02
847 4645 4.602259 CGTGTCGGCCACCACACT 62.602 66.667 21.33 0.00 40.74 3.55
867 4670 3.322541 TGAGGTAAACGATTCCAGTCACA 59.677 43.478 0.00 0.00 0.00 3.58
878 4693 3.102052 AGAAAAGCGTGAGGTAAACGA 57.898 42.857 0.00 0.00 43.68 3.85
901 4716 2.032620 ACGGATAGTAGGAGCAACAGG 58.967 52.381 0.00 0.00 0.00 4.00
906 4721 2.730934 ACAGACGGATAGTAGGAGCA 57.269 50.000 0.00 0.00 0.00 4.26
915 4733 6.866770 GCATACTGCTTATAAACAGACGGATA 59.133 38.462 20.12 4.69 40.96 2.59
920 4738 6.138761 GCATGCATACTGCTTATAAACAGAC 58.861 40.000 20.12 8.68 45.31 3.51
925 4744 4.574421 ACACGCATGCATACTGCTTATAAA 59.426 37.500 19.57 0.00 45.31 1.40
941 4768 0.744414 ATCGGCAGCTAAACACGCAT 60.744 50.000 0.00 0.00 0.00 4.73
943 4770 1.348594 GATCGGCAGCTAAACACGC 59.651 57.895 0.00 0.00 0.00 5.34
951 4778 1.209128 CGTTTATTCGATCGGCAGCT 58.791 50.000 16.41 0.00 0.00 4.24
952 4779 0.383124 GCGTTTATTCGATCGGCAGC 60.383 55.000 16.41 7.92 0.00 5.25
953 4780 0.927537 TGCGTTTATTCGATCGGCAG 59.072 50.000 16.41 1.62 0.00 4.85
954 4781 1.326245 CTTGCGTTTATTCGATCGGCA 59.674 47.619 16.41 11.96 0.00 5.69
955 4782 1.332904 CCTTGCGTTTATTCGATCGGC 60.333 52.381 16.41 9.27 0.00 5.54
956 4783 1.260561 CCCTTGCGTTTATTCGATCGG 59.739 52.381 16.41 0.00 0.00 4.18
957 4784 1.260561 CCCCTTGCGTTTATTCGATCG 59.739 52.381 9.36 9.36 0.00 3.69
958 4785 2.287103 GTCCCCTTGCGTTTATTCGATC 59.713 50.000 0.00 0.00 0.00 3.69
959 4786 2.285977 GTCCCCTTGCGTTTATTCGAT 58.714 47.619 0.00 0.00 0.00 3.59
960 4787 1.002201 TGTCCCCTTGCGTTTATTCGA 59.998 47.619 0.00 0.00 0.00 3.71
990 4820 0.603707 CTTGTGCCATGAGACCGTGT 60.604 55.000 0.00 0.00 0.00 4.49
993 4823 2.743752 CGCTTGTGCCATGAGACCG 61.744 63.158 0.00 0.00 35.36 4.79
994 4824 2.401766 CCGCTTGTGCCATGAGACC 61.402 63.158 0.00 0.00 35.36 3.85
995 4825 3.044059 GCCGCTTGTGCCATGAGAC 62.044 63.158 0.00 0.00 35.36 3.36
996 4826 2.747460 GCCGCTTGTGCCATGAGA 60.747 61.111 0.00 0.00 35.36 3.27
1278 5142 3.885777 GCGTAGTAAGTCGCGTAGT 57.114 52.632 5.77 0.00 42.79 2.73
1288 5152 0.465097 CCGAGGAGGGAGCGTAGTAA 60.465 60.000 0.00 0.00 35.97 2.24
1593 5459 2.478989 CGCGAGGAGGTAGTTGAGA 58.521 57.895 0.00 0.00 0.00 3.27
1641 5507 1.664649 CAGCGTCTCGTGCTCCAAA 60.665 57.895 0.00 0.00 41.72 3.28
1669 5535 2.350197 CGCCTTTGTCAGAAAGCTCTTG 60.350 50.000 0.00 0.00 0.00 3.02
1746 5612 2.029844 GCTGTGCTTGACCTCGTCC 61.030 63.158 0.00 0.00 0.00 4.79
1768 5634 1.375523 GGTTGTCCAGCCACCGTAG 60.376 63.158 0.00 0.00 0.00 3.51
1872 5738 4.903355 CTCTGCTCGCTCGCCTCG 62.903 72.222 0.00 0.00 0.00 4.63
1905 5771 1.896660 CTTGTCGTTGGGGTGGTGG 60.897 63.158 0.00 0.00 0.00 4.61
1935 5801 2.056223 GGCAGTACCGAGGTAGCCA 61.056 63.158 20.95 0.00 39.93 4.75
1937 5803 1.141234 GTGGCAGTACCGAGGTAGC 59.859 63.158 1.62 3.78 43.94 3.58
1947 5813 2.598099 TCGTCGGTGGTGGCAGTA 60.598 61.111 0.00 0.00 0.00 2.74
1964 5830 3.450115 GGTAGCTCAGCGGGTCGT 61.450 66.667 0.00 0.00 0.00 4.34
2004 5880 1.600916 GAGCCCTGTGCCTTTCGTT 60.601 57.895 0.00 0.00 42.71 3.85
2006 5882 2.747855 GGAGCCCTGTGCCTTTCG 60.748 66.667 0.00 0.00 42.71 3.46
2010 5886 2.856000 ACAAGGAGCCCTGTGCCT 60.856 61.111 0.00 0.00 42.71 4.75
2238 6114 1.079127 CGGGACAATTGCTCCGTCT 60.079 57.895 23.71 0.00 37.92 4.18
2247 6123 1.517832 CTCCTCTCGCGGGACAATT 59.482 57.895 3.45 0.00 0.00 2.32
2248 6124 2.427245 CCTCCTCTCGCGGGACAAT 61.427 63.158 3.45 0.00 0.00 2.71
2280 6156 0.767998 CCCCTTCCATAAGCTCTCCC 59.232 60.000 0.00 0.00 0.00 4.30
2281 6157 1.696884 CTCCCCTTCCATAAGCTCTCC 59.303 57.143 0.00 0.00 0.00 3.71
2311 6187 3.758931 GGCCTTTTTCCGCGCCAT 61.759 61.111 0.00 0.00 41.25 4.40
2421 12638 2.303175 ACTAGCGAGCCTCCTCTTTAG 58.697 52.381 0.00 0.00 35.90 1.85
2436 12653 3.451540 AGTTACCTTAGGGAGCAACTAGC 59.548 47.826 2.32 0.00 38.82 3.42
2440 12657 3.975168 TCAGTTACCTTAGGGAGCAAC 57.025 47.619 2.32 1.47 36.25 4.17
2441 12658 6.442564 TCTTATTCAGTTACCTTAGGGAGCAA 59.557 38.462 2.32 0.00 36.25 3.91
2442 12659 5.962031 TCTTATTCAGTTACCTTAGGGAGCA 59.038 40.000 2.32 0.00 36.25 4.26
2443 12660 6.481434 TCTTATTCAGTTACCTTAGGGAGC 57.519 41.667 2.32 0.00 36.25 4.70
2444 12661 6.987404 GCTTCTTATTCAGTTACCTTAGGGAG 59.013 42.308 2.32 0.00 36.25 4.30
2445 12662 6.442564 TGCTTCTTATTCAGTTACCTTAGGGA 59.557 38.462 2.32 0.00 36.25 4.20
2446 12663 6.650120 TGCTTCTTATTCAGTTACCTTAGGG 58.350 40.000 2.32 0.00 38.88 3.53
2447 12664 7.227512 CCATGCTTCTTATTCAGTTACCTTAGG 59.772 40.741 0.00 0.00 0.00 2.69
2448 12665 7.770897 ACCATGCTTCTTATTCAGTTACCTTAG 59.229 37.037 0.00 0.00 0.00 2.18
2449 12666 7.552687 CACCATGCTTCTTATTCAGTTACCTTA 59.447 37.037 0.00 0.00 0.00 2.69
2450 12667 6.375455 CACCATGCTTCTTATTCAGTTACCTT 59.625 38.462 0.00 0.00 0.00 3.50
2451 12668 5.882557 CACCATGCTTCTTATTCAGTTACCT 59.117 40.000 0.00 0.00 0.00 3.08
2452 12669 5.066505 CCACCATGCTTCTTATTCAGTTACC 59.933 44.000 0.00 0.00 0.00 2.85
2467 12684 0.178981 ACAACTTCAGCCACCATGCT 60.179 50.000 0.00 0.00 44.00 3.79
2606 14520 3.329814 TCCCACTTCTTTTCCCTTAGGAC 59.670 47.826 0.00 0.00 43.90 3.85
2608 14522 3.308473 CCTCCCACTTCTTTTCCCTTAGG 60.308 52.174 0.00 0.00 0.00 2.69
2615 14529 7.946381 ATTTTAGATCCTCCCACTTCTTTTC 57.054 36.000 0.00 0.00 0.00 2.29
2625 14539 7.110155 TGACACAAGTAATTTTAGATCCTCCC 58.890 38.462 0.00 0.00 0.00 4.30
2677 14604 6.358974 TTTGATTACTCACCTGATCACTGA 57.641 37.500 0.00 0.00 0.00 3.41
2680 14607 8.948631 TTAGATTTGATTACTCACCTGATCAC 57.051 34.615 0.00 0.00 0.00 3.06
2710 14640 2.604046 TTCTCTCCCTTCGCTATTGC 57.396 50.000 0.00 0.00 0.00 3.56
2715 14645 2.303022 TGTCAAATTCTCTCCCTTCGCT 59.697 45.455 0.00 0.00 0.00 4.93
2843 14777 6.989169 ACATCTAGAGTGTAATCAGATTTGGC 59.011 38.462 0.00 0.00 0.00 4.52
2844 14778 8.954950 AACATCTAGAGTGTAATCAGATTTGG 57.045 34.615 0.00 0.00 0.00 3.28
2918 14852 9.787532 TCTAGAATAAATGCCTTTTTCAATTCG 57.212 29.630 0.00 0.00 30.32 3.34
2954 14889 7.172703 ACGTCTTACAAAAATAAACAGAGGGAG 59.827 37.037 0.00 0.00 0.00 4.30
2955 14890 6.993902 ACGTCTTACAAAAATAAACAGAGGGA 59.006 34.615 0.00 0.00 0.00 4.20
2956 14891 7.198306 ACGTCTTACAAAAATAAACAGAGGG 57.802 36.000 0.00 0.00 0.00 4.30
2957 14892 9.511144 AAAACGTCTTACAAAAATAAACAGAGG 57.489 29.630 0.00 0.00 0.00 3.69
2977 14912 9.939802 AGGTCTTATCTTAAATGTCTAAAACGT 57.060 29.630 0.00 0.00 0.00 3.99
2996 14931 9.403583 ACTGAAATTGAACTGTTTTAGGTCTTA 57.596 29.630 0.00 0.00 43.84 2.10
2997 14932 8.293699 ACTGAAATTGAACTGTTTTAGGTCTT 57.706 30.769 0.00 0.00 43.84 3.01
2998 14933 7.881775 ACTGAAATTGAACTGTTTTAGGTCT 57.118 32.000 0.00 0.00 43.84 3.85
2999 14934 7.973944 ACAACTGAAATTGAACTGTTTTAGGTC 59.026 33.333 0.00 0.00 43.76 3.85
3000 14935 7.836842 ACAACTGAAATTGAACTGTTTTAGGT 58.163 30.769 0.00 0.00 33.57 3.08
3001 14936 8.190784 AGACAACTGAAATTGAACTGTTTTAGG 58.809 33.333 0.00 0.00 33.57 2.69
3004 14939 9.921637 TTTAGACAACTGAAATTGAACTGTTTT 57.078 25.926 0.00 0.00 33.57 2.43
3005 14940 9.921637 TTTTAGACAACTGAAATTGAACTGTTT 57.078 25.926 0.00 0.00 33.57 2.83
3006 14941 9.353999 GTTTTAGACAACTGAAATTGAACTGTT 57.646 29.630 0.00 0.00 34.91 3.16
3007 14942 7.696453 CGTTTTAGACAACTGAAATTGAACTGT 59.304 33.333 0.00 0.00 34.91 3.55
3008 14943 7.696453 ACGTTTTAGACAACTGAAATTGAACTG 59.304 33.333 0.00 0.00 34.91 3.16
3009 14944 7.758495 ACGTTTTAGACAACTGAAATTGAACT 58.242 30.769 0.00 0.00 34.91 3.01
3010 14945 7.908601 AGACGTTTTAGACAACTGAAATTGAAC 59.091 33.333 0.00 0.00 34.91 3.18
3011 14946 7.981142 AGACGTTTTAGACAACTGAAATTGAA 58.019 30.769 0.00 0.00 34.91 2.69
3012 14947 7.548196 AGACGTTTTAGACAACTGAAATTGA 57.452 32.000 0.00 0.00 34.91 2.57
3013 14948 9.155053 GTAAGACGTTTTAGACAACTGAAATTG 57.845 33.333 0.00 0.00 34.91 2.32
3014 14949 8.885722 TGTAAGACGTTTTAGACAACTGAAATT 58.114 29.630 0.00 0.00 34.91 1.82
3015 14950 8.428186 TGTAAGACGTTTTAGACAACTGAAAT 57.572 30.769 0.00 0.00 34.91 2.17
3016 14951 7.830940 TGTAAGACGTTTTAGACAACTGAAA 57.169 32.000 0.00 0.00 30.97 2.69
3017 14952 7.830940 TTGTAAGACGTTTTAGACAACTGAA 57.169 32.000 0.00 0.00 0.00 3.02
3018 14953 7.830940 TTTGTAAGACGTTTTAGACAACTGA 57.169 32.000 6.65 0.00 0.00 3.41
3019 14954 8.883789 TTTTTGTAAGACGTTTTAGACAACTG 57.116 30.769 6.65 0.00 0.00 3.16
3020 14955 9.498307 CATTTTTGTAAGACGTTTTAGACAACT 57.502 29.630 6.65 0.00 0.00 3.16
3021 14956 9.493206 TCATTTTTGTAAGACGTTTTAGACAAC 57.507 29.630 6.65 0.00 0.00 3.32
3023 14958 9.493206 GTTCATTTTTGTAAGACGTTTTAGACA 57.507 29.630 0.00 0.00 0.00 3.41
3024 14959 9.493206 TGTTCATTTTTGTAAGACGTTTTAGAC 57.507 29.630 0.00 0.00 0.00 2.59
3025 14960 9.710979 CTGTTCATTTTTGTAAGACGTTTTAGA 57.289 29.630 0.00 0.00 0.00 2.10
3026 14961 9.710979 TCTGTTCATTTTTGTAAGACGTTTTAG 57.289 29.630 0.00 0.00 0.00 1.85
3027 14962 9.710979 CTCTGTTCATTTTTGTAAGACGTTTTA 57.289 29.630 0.00 0.00 0.00 1.52
3028 14963 7.700656 CCTCTGTTCATTTTTGTAAGACGTTTT 59.299 33.333 0.00 0.00 0.00 2.43
3029 14964 7.193595 CCTCTGTTCATTTTTGTAAGACGTTT 58.806 34.615 0.00 0.00 0.00 3.60
3030 14965 6.238648 CCCTCTGTTCATTTTTGTAAGACGTT 60.239 38.462 0.00 0.00 0.00 3.99
3031 14966 5.238650 CCCTCTGTTCATTTTTGTAAGACGT 59.761 40.000 0.00 0.00 0.00 4.34
3032 14967 5.468746 TCCCTCTGTTCATTTTTGTAAGACG 59.531 40.000 0.00 0.00 0.00 4.18
3033 14968 6.486993 ACTCCCTCTGTTCATTTTTGTAAGAC 59.513 38.462 0.00 0.00 0.00 3.01
3034 14969 6.601332 ACTCCCTCTGTTCATTTTTGTAAGA 58.399 36.000 0.00 0.00 0.00 2.10
3035 14970 6.884280 ACTCCCTCTGTTCATTTTTGTAAG 57.116 37.500 0.00 0.00 0.00 2.34
3038 14973 8.934023 TTTATACTCCCTCTGTTCATTTTTGT 57.066 30.769 0.00 0.00 0.00 2.83
3042 14977 9.838339 CACTATTTATACTCCCTCTGTTCATTT 57.162 33.333 0.00 0.00 0.00 2.32
3043 14978 8.432805 CCACTATTTATACTCCCTCTGTTCATT 58.567 37.037 0.00 0.00 0.00 2.57
3044 14979 7.789831 TCCACTATTTATACTCCCTCTGTTCAT 59.210 37.037 0.00 0.00 0.00 2.57
3045 14980 7.130099 TCCACTATTTATACTCCCTCTGTTCA 58.870 38.462 0.00 0.00 0.00 3.18
3046 14981 7.598759 TCCACTATTTATACTCCCTCTGTTC 57.401 40.000 0.00 0.00 0.00 3.18
3047 14982 8.568617 AATCCACTATTTATACTCCCTCTGTT 57.431 34.615 0.00 0.00 0.00 3.16
3048 14983 8.432805 CAAATCCACTATTTATACTCCCTCTGT 58.567 37.037 0.00 0.00 35.54 3.41
3049 14984 8.651389 TCAAATCCACTATTTATACTCCCTCTG 58.349 37.037 0.00 0.00 35.54 3.35
3050 14985 8.798975 TCAAATCCACTATTTATACTCCCTCT 57.201 34.615 0.00 0.00 35.54 3.69
3124 15059 1.531149 CTCTACTTTTGTGCCACACCG 59.469 52.381 0.00 0.00 32.73 4.94
3140 15075 3.519510 CTCAATCACCCTTGGTTCCTCTA 59.480 47.826 0.00 0.00 31.02 2.43
3179 15119 4.277672 ACATTGTTGATCTATGCAGATGCC 59.722 41.667 1.72 0.00 41.78 4.40
3180 15120 5.434352 ACATTGTTGATCTATGCAGATGC 57.566 39.130 0.00 0.00 41.78 3.91
3209 15157 6.264744 TGGATAGTTGGAGTCCTCTTTATACG 59.735 42.308 11.33 0.00 33.15 3.06
3218 15166 2.171448 GCACATGGATAGTTGGAGTCCT 59.829 50.000 11.33 0.00 33.15 3.85
3238 15196 6.663944 AAAGTGATAGTAGATTTTGACCGC 57.336 37.500 0.00 0.00 0.00 5.68
3332 15371 2.175878 AGGAGAGCATGTTGTGTGTC 57.824 50.000 0.00 0.00 0.00 3.67
3333 15372 2.645838 AAGGAGAGCATGTTGTGTGT 57.354 45.000 0.00 0.00 0.00 3.72
3334 15373 3.996150 AAAAGGAGAGCATGTTGTGTG 57.004 42.857 0.00 0.00 0.00 3.82
3335 15374 6.655078 AATTAAAAGGAGAGCATGTTGTGT 57.345 33.333 0.00 0.00 0.00 3.72
3337 15376 8.814038 AGATAATTAAAAGGAGAGCATGTTGT 57.186 30.769 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.