Multiple sequence alignment - TraesCS7A01G514200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G514200 chr7A 100.000 4942 0 0 1 4942 700502554 700507495 0.000000e+00 9127.0
1 TraesCS7A01G514200 chr7A 87.615 1631 134 37 2940 4528 700208090 700206486 0.000000e+00 1831.0
2 TraesCS7A01G514200 chr7A 86.771 1217 124 27 1592 2784 700209426 700208223 0.000000e+00 1321.0
3 TraesCS7A01G514200 chr7A 80.296 1350 119 57 1016 2328 699912566 699913805 0.000000e+00 883.0
4 TraesCS7A01G514200 chr7A 86.147 462 46 11 2347 2801 699913999 699914449 2.680000e-132 483.0
5 TraesCS7A01G514200 chr7A 85.012 407 49 3 4534 4940 700206439 700206045 2.140000e-108 403.0
6 TraesCS7A01G514200 chr7B 84.989 3504 327 98 758 4145 699146281 699142861 0.000000e+00 3373.0
7 TraesCS7A01G514200 chr7B 84.965 3452 321 98 808 4145 698655918 698652551 0.000000e+00 3317.0
8 TraesCS7A01G514200 chr7B 85.687 3158 292 80 1085 4145 694364992 694361898 0.000000e+00 3181.0
9 TraesCS7A01G514200 chr7B 85.138 2678 229 80 1645 4246 699182600 699180016 0.000000e+00 2584.0
10 TraesCS7A01G514200 chr7B 86.792 2173 175 53 2401 4529 699140919 699138815 0.000000e+00 2320.0
11 TraesCS7A01G514200 chr7B 92.956 1377 67 12 2796 4145 693621426 693620053 0.000000e+00 1978.0
12 TraesCS7A01G514200 chr7B 87.097 1612 138 44 2347 3938 696144611 696143050 0.000000e+00 1760.0
13 TraesCS7A01G514200 chr7B 95.389 976 32 10 1808 2772 693622579 693621606 0.000000e+00 1541.0
14 TraesCS7A01G514200 chr7B 83.386 1270 129 47 1456 2674 693314813 693316051 0.000000e+00 1101.0
15 TraesCS7A01G514200 chr7B 83.028 1255 153 39 1078 2306 696145894 696144674 0.000000e+00 1083.0
16 TraesCS7A01G514200 chr7B 83.705 1031 79 28 3934 4940 696142881 696141916 0.000000e+00 891.0
17 TraesCS7A01G514200 chr7B 85.788 774 73 15 4172 4940 694361898 694361157 0.000000e+00 785.0
18 TraesCS7A01G514200 chr7B 86.523 512 46 11 1157 1647 699183216 699182707 4.350000e-150 542.0
19 TraesCS7A01G514200 chr7B 89.681 407 30 3 4534 4940 698652149 698651755 4.410000e-140 508.0
20 TraesCS7A01G514200 chr7B 89.216 408 30 5 4534 4940 693619665 693619271 9.550000e-137 497.0
21 TraesCS7A01G514200 chr7B 81.978 627 57 30 947 1553 694189134 694189724 9.620000e-132 481.0
22 TraesCS7A01G514200 chr7B 88.698 407 28 5 4534 4940 699179651 699179263 9.620000e-132 481.0
23 TraesCS7A01G514200 chr7B 84.137 498 42 23 1117 1587 699142638 699142151 9.760000e-122 448.0
24 TraesCS7A01G514200 chr7B 89.385 358 31 5 4172 4526 698652551 698652198 1.260000e-120 444.0
25 TraesCS7A01G514200 chr7B 86.750 400 35 5 1013 1409 693313164 693313548 3.530000e-116 429.0
26 TraesCS7A01G514200 chr7B 89.744 312 29 3 4172 4480 693620053 693619742 3.590000e-106 396.0
27 TraesCS7A01G514200 chr7B 88.889 288 26 1 4647 4934 697026485 697026766 2.830000e-92 350.0
28 TraesCS7A01G514200 chr7B 88.435 294 26 2 4647 4940 697365878 697366163 1.020000e-91 348.0
29 TraesCS7A01G514200 chr7B 80.423 378 31 20 3902 4249 636073814 636073450 1.060000e-61 248.0
30 TraesCS7A01G514200 chr7B 87.975 158 17 2 808 963 694365211 694365054 8.450000e-43 185.0
31 TraesCS7A01G514200 chr7B 84.444 135 9 5 989 1115 685297820 685297690 6.720000e-24 122.0
32 TraesCS7A01G514200 chr7B 81.034 116 7 7 1034 1149 697358395 697358495 1.470000e-10 78.7
33 TraesCS7A01G514200 chr7D 84.683 3519 353 100 430 3855 514750945 514747520 0.000000e+00 3341.0
34 TraesCS7A01G514200 chr7D 87.125 1802 153 36 2470 4233 608198507 608196747 0.000000e+00 1969.0
35 TraesCS7A01G514200 chr7D 87.980 1015 86 20 2940 3938 610533586 610534580 0.000000e+00 1166.0
36 TraesCS7A01G514200 chr7D 86.746 1011 96 20 2940 3938 600234133 600235117 0.000000e+00 1090.0
37 TraesCS7A01G514200 chr7D 85.314 1035 75 27 3931 4940 610534739 610535721 0.000000e+00 998.0
38 TraesCS7A01G514200 chr7D 82.406 1222 140 44 1117 2306 608199850 608198672 0.000000e+00 996.0
39 TraesCS7A01G514200 chr7D 80.428 1262 157 58 1108 2306 600232202 600233436 0.000000e+00 880.0
40 TraesCS7A01G514200 chr7D 90.000 660 49 5 4281 4940 600235585 600236227 0.000000e+00 837.0
41 TraesCS7A01G514200 chr7D 89.655 580 49 9 1792 2361 609862329 609862907 0.000000e+00 728.0
42 TraesCS7A01G514200 chr7D 88.284 606 63 8 1765 2364 609337969 609337366 0.000000e+00 719.0
43 TraesCS7A01G514200 chr7D 88.163 566 48 5 4375 4940 514746535 514745989 0.000000e+00 656.0
44 TraesCS7A01G514200 chr7D 87.250 549 37 18 1117 1638 610531534 610532076 3.290000e-166 595.0
45 TraesCS7A01G514200 chr7D 86.338 527 30 14 3853 4349 514747037 514746523 2.020000e-148 536.0
46 TraesCS7A01G514200 chr7D 92.691 301 16 1 4640 4940 608196349 608196055 3.530000e-116 429.0
47 TraesCS7A01G514200 chr7D 90.236 297 18 5 1011 1307 609348729 609348444 1.300000e-100 377.0
48 TraesCS7A01G514200 chr7D 77.544 619 92 24 467 1071 608200450 608199865 3.690000e-86 329.0
49 TraesCS7A01G514200 chr7D 83.072 319 19 11 3931 4225 600235275 600235582 1.770000e-64 257.0
50 TraesCS7A01G514200 chr7D 92.638 163 11 1 809 970 610531335 610531497 2.970000e-57 233.0
51 TraesCS7A01G514200 chr4A 85.422 782 64 25 3764 4529 661822411 661821664 0.000000e+00 767.0
52 TraesCS7A01G514200 chr4A 87.317 410 25 9 4534 4940 661821619 661821234 1.260000e-120 444.0
53 TraesCS7A01G514200 chr4A 76.874 947 112 47 467 1389 661826890 661826027 2.110000e-118 436.0
54 TraesCS7A01G514200 chrUn 89.537 583 50 9 1792 2364 209380529 209379948 0.000000e+00 728.0
55 TraesCS7A01G514200 chr4D 80.085 472 44 14 3844 4283 461482527 461482980 6.220000e-79 305.0
56 TraesCS7A01G514200 chr5D 78.178 472 52 18 3844 4283 482519767 482519315 2.280000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G514200 chr7A 700502554 700507495 4941 False 9127.000000 9127 100.000000 1 4942 1 chr7A.!!$F1 4941
1 TraesCS7A01G514200 chr7A 700206045 700209426 3381 True 1185.000000 1831 86.466000 1592 4940 3 chr7A.!!$R1 3348
2 TraesCS7A01G514200 chr7A 699912566 699914449 1883 False 683.000000 883 83.221500 1016 2801 2 chr7A.!!$F2 1785
3 TraesCS7A01G514200 chr7B 699138815 699146281 7466 True 2047.000000 3373 85.306000 758 4529 3 chr7B.!!$R7 3771
4 TraesCS7A01G514200 chr7B 698651755 698655918 4163 True 1423.000000 3317 88.010333 808 4940 3 chr7B.!!$R6 4132
5 TraesCS7A01G514200 chr7B 694361157 694365211 4054 True 1383.666667 3181 86.483333 808 4940 3 chr7B.!!$R4 4132
6 TraesCS7A01G514200 chr7B 696141916 696145894 3978 True 1244.666667 1760 84.610000 1078 4940 3 chr7B.!!$R5 3862
7 TraesCS7A01G514200 chr7B 699179263 699183216 3953 True 1202.333333 2584 86.786333 1157 4940 3 chr7B.!!$R8 3783
8 TraesCS7A01G514200 chr7B 693619271 693622579 3308 True 1103.000000 1978 91.826250 1808 4940 4 chr7B.!!$R3 3132
9 TraesCS7A01G514200 chr7B 693313164 693316051 2887 False 765.000000 1101 85.068000 1013 2674 2 chr7B.!!$F5 1661
10 TraesCS7A01G514200 chr7B 694189134 694189724 590 False 481.000000 481 81.978000 947 1553 1 chr7B.!!$F1 606
11 TraesCS7A01G514200 chr7D 514745989 514750945 4956 True 1511.000000 3341 86.394667 430 4940 3 chr7D.!!$R3 4510
12 TraesCS7A01G514200 chr7D 608196055 608200450 4395 True 930.750000 1969 84.941500 467 4940 4 chr7D.!!$R4 4473
13 TraesCS7A01G514200 chr7D 600232202 600236227 4025 False 766.000000 1090 85.061500 1108 4940 4 chr7D.!!$F2 3832
14 TraesCS7A01G514200 chr7D 610531335 610535721 4386 False 748.000000 1166 88.295500 809 4940 4 chr7D.!!$F3 4131
15 TraesCS7A01G514200 chr7D 609862329 609862907 578 False 728.000000 728 89.655000 1792 2361 1 chr7D.!!$F1 569
16 TraesCS7A01G514200 chr7D 609337366 609337969 603 True 719.000000 719 88.284000 1765 2364 1 chr7D.!!$R1 599
17 TraesCS7A01G514200 chr4A 661821234 661826890 5656 True 549.000000 767 83.204333 467 4940 3 chr4A.!!$R1 4473
18 TraesCS7A01G514200 chrUn 209379948 209380529 581 True 728.000000 728 89.537000 1792 2364 1 chrUn.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.032952 GATATTGGTACCGCCGAGCA 59.967 55.0 7.57 0.00 41.21 4.26 F
249 250 0.033504 ATATTGGTACCGCCGAGCAG 59.966 55.0 7.57 0.00 41.21 4.24 F
409 410 0.032952 TTGTGACCAGCTACGACACC 59.967 55.0 11.24 0.00 0.00 4.16 F
659 672 0.240411 GGTACTGCGTCTCGTTGTCT 59.760 55.0 0.00 0.00 0.00 3.41 F
1385 1540 0.250597 AAGTGTTCGGTGTTAGGCCC 60.251 55.0 0.00 0.00 0.00 5.80 F
2648 6158 0.462047 CCCCTATGAACACGTGAGCC 60.462 60.0 25.01 10.88 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1502 0.530870 TGGTGTGCGACAATCGTTCA 60.531 50.000 0.00 0.00 42.81 3.18 R
1724 3279 0.608035 CCTTGGCTTGCCCTTAACGA 60.608 55.000 9.35 0.00 0.00 3.85 R
2004 3615 1.805945 GGGACACGCGTAGAAGCAG 60.806 63.158 13.44 0.00 36.85 4.24 R
2648 6158 4.389077 AGCTCGAAATAAACACGAAGGAAG 59.611 41.667 0.00 0.00 0.00 3.46 R
2666 6176 4.307432 TCAAGTCTTACAGGAAAAGCTCG 58.693 43.478 0.00 0.00 0.00 5.03 R
4590 13051 1.109323 ACCTGTTGGCTTGCCAGTTC 61.109 55.000 14.33 9.79 36.63 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.463443 GAAAATATATGTTCACACAATTAGGCC 57.537 33.333 10.31 0.00 36.16 5.19
48 49 8.532186 AAATATATGTTCACACAATTAGGCCA 57.468 30.769 5.01 0.00 36.16 5.36
49 50 8.710749 AATATATGTTCACACAATTAGGCCAT 57.289 30.769 5.01 0.00 36.16 4.40
50 51 4.989279 ATGTTCACACAATTAGGCCATC 57.011 40.909 5.01 0.00 36.16 3.51
51 52 3.088532 TGTTCACACAATTAGGCCATCC 58.911 45.455 5.01 0.00 0.00 3.51
52 53 2.427095 GTTCACACAATTAGGCCATCCC 59.573 50.000 5.01 0.00 0.00 3.85
53 54 1.064017 TCACACAATTAGGCCATCCCC 60.064 52.381 5.01 0.00 0.00 4.81
54 55 0.106719 ACACAATTAGGCCATCCCCG 60.107 55.000 5.01 0.00 0.00 5.73
55 56 1.152756 ACAATTAGGCCATCCCCGC 60.153 57.895 5.01 0.00 0.00 6.13
56 57 1.152777 CAATTAGGCCATCCCCGCA 60.153 57.895 5.01 0.00 0.00 5.69
57 58 0.540365 CAATTAGGCCATCCCCGCAT 60.540 55.000 5.01 0.00 0.00 4.73
58 59 0.188342 AATTAGGCCATCCCCGCATT 59.812 50.000 5.01 0.00 0.00 3.56
59 60 0.188342 ATTAGGCCATCCCCGCATTT 59.812 50.000 5.01 0.00 0.00 2.32
60 61 0.754957 TTAGGCCATCCCCGCATTTG 60.755 55.000 5.01 0.00 0.00 2.32
61 62 4.225703 GGCCATCCCCGCATTTGC 62.226 66.667 0.00 0.00 37.78 3.68
62 63 3.459965 GCCATCCCCGCATTTGCA 61.460 61.111 3.13 0.00 42.21 4.08
63 64 3.016541 GCCATCCCCGCATTTGCAA 62.017 57.895 0.00 0.00 42.21 4.08
64 65 1.153588 CCATCCCCGCATTTGCAAC 60.154 57.895 0.00 0.00 42.21 4.17
65 66 1.606885 CCATCCCCGCATTTGCAACT 61.607 55.000 0.00 0.00 42.21 3.16
66 67 0.458889 CATCCCCGCATTTGCAACTG 60.459 55.000 12.16 12.16 42.21 3.16
67 68 1.606885 ATCCCCGCATTTGCAACTGG 61.607 55.000 17.38 8.39 42.21 4.00
68 69 2.262292 CCCGCATTTGCAACTGGG 59.738 61.111 22.13 22.13 42.21 4.45
69 70 2.262292 CCGCATTTGCAACTGGGG 59.738 61.111 29.83 29.83 42.21 4.96
70 71 2.432972 CGCATTTGCAACTGGGGC 60.433 61.111 21.56 10.41 42.21 5.80
71 72 2.432972 GCATTTGCAACTGGGGCG 60.433 61.111 17.38 0.00 41.59 6.13
72 73 2.432972 CATTTGCAACTGGGGCGC 60.433 61.111 8.84 0.00 0.00 6.53
73 74 3.694538 ATTTGCAACTGGGGCGCC 61.695 61.111 21.18 21.18 0.00 6.53
86 87 3.747976 GCGCCGTCCAATGCCTTT 61.748 61.111 0.00 0.00 0.00 3.11
87 88 2.961768 CGCCGTCCAATGCCTTTT 59.038 55.556 0.00 0.00 0.00 2.27
88 89 1.288752 CGCCGTCCAATGCCTTTTT 59.711 52.632 0.00 0.00 0.00 1.94
89 90 1.008361 CGCCGTCCAATGCCTTTTTG 61.008 55.000 0.00 0.00 0.00 2.44
90 91 1.291184 GCCGTCCAATGCCTTTTTGC 61.291 55.000 0.00 0.00 0.00 3.68
91 92 0.033228 CCGTCCAATGCCTTTTTGCA 59.967 50.000 0.00 0.00 46.94 4.08
92 93 1.421382 CGTCCAATGCCTTTTTGCAG 58.579 50.000 0.00 0.00 45.93 4.41
93 94 1.269726 CGTCCAATGCCTTTTTGCAGT 60.270 47.619 0.00 0.00 45.93 4.40
98 99 3.308438 AATGCCTTTTTGCAGTGCTAG 57.692 42.857 17.60 8.22 45.93 3.42
99 100 0.314935 TGCCTTTTTGCAGTGCTAGC 59.685 50.000 17.60 8.10 36.04 3.42
100 101 0.389037 GCCTTTTTGCAGTGCTAGCC 60.389 55.000 17.60 3.49 0.00 3.93
101 102 0.961019 CCTTTTTGCAGTGCTAGCCA 59.039 50.000 17.60 0.00 0.00 4.75
102 103 1.068055 CCTTTTTGCAGTGCTAGCCAG 60.068 52.381 17.60 2.86 0.00 4.85
103 104 1.881973 CTTTTTGCAGTGCTAGCCAGA 59.118 47.619 17.60 0.00 0.00 3.86
104 105 2.205022 TTTTGCAGTGCTAGCCAGAT 57.795 45.000 17.60 0.00 0.00 2.90
105 106 1.456296 TTTGCAGTGCTAGCCAGATG 58.544 50.000 17.60 6.73 0.00 2.90
106 107 0.614812 TTGCAGTGCTAGCCAGATGA 59.385 50.000 17.60 0.00 0.00 2.92
107 108 0.177373 TGCAGTGCTAGCCAGATGAG 59.823 55.000 17.60 0.00 0.00 2.90
108 109 0.177604 GCAGTGCTAGCCAGATGAGT 59.822 55.000 13.29 0.00 0.00 3.41
109 110 1.805871 GCAGTGCTAGCCAGATGAGTC 60.806 57.143 13.29 0.00 0.00 3.36
110 111 1.118838 AGTGCTAGCCAGATGAGTCC 58.881 55.000 13.29 0.00 0.00 3.85
111 112 0.826715 GTGCTAGCCAGATGAGTCCA 59.173 55.000 13.29 0.00 0.00 4.02
112 113 1.208052 GTGCTAGCCAGATGAGTCCAA 59.792 52.381 13.29 0.00 0.00 3.53
113 114 1.483827 TGCTAGCCAGATGAGTCCAAG 59.516 52.381 13.29 0.00 0.00 3.61
114 115 1.759445 GCTAGCCAGATGAGTCCAAGA 59.241 52.381 2.29 0.00 0.00 3.02
115 116 2.368221 GCTAGCCAGATGAGTCCAAGAT 59.632 50.000 2.29 0.00 0.00 2.40
116 117 3.803021 GCTAGCCAGATGAGTCCAAGATG 60.803 52.174 2.29 0.00 0.00 2.90
117 118 2.194859 AGCCAGATGAGTCCAAGATGT 58.805 47.619 0.00 0.00 0.00 3.06
118 119 2.575279 AGCCAGATGAGTCCAAGATGTT 59.425 45.455 0.00 0.00 0.00 2.71
119 120 2.681848 GCCAGATGAGTCCAAGATGTTG 59.318 50.000 0.00 0.00 0.00 3.33
120 121 3.871463 GCCAGATGAGTCCAAGATGTTGT 60.871 47.826 1.49 0.00 30.95 3.32
121 122 4.623886 GCCAGATGAGTCCAAGATGTTGTA 60.624 45.833 1.49 0.00 30.95 2.41
122 123 4.872691 CCAGATGAGTCCAAGATGTTGTAC 59.127 45.833 1.49 0.00 30.95 2.90
123 124 4.872691 CAGATGAGTCCAAGATGTTGTACC 59.127 45.833 1.49 0.00 30.95 3.34
124 125 3.313012 TGAGTCCAAGATGTTGTACCG 57.687 47.619 1.49 0.00 30.95 4.02
125 126 2.894765 TGAGTCCAAGATGTTGTACCGA 59.105 45.455 1.49 0.00 30.95 4.69
126 127 3.251571 GAGTCCAAGATGTTGTACCGAC 58.748 50.000 1.49 2.19 30.95 4.79
127 128 2.897969 AGTCCAAGATGTTGTACCGACT 59.102 45.455 1.49 4.40 30.79 4.18
128 129 4.084287 AGTCCAAGATGTTGTACCGACTA 58.916 43.478 9.50 0.00 32.72 2.59
129 130 4.710375 AGTCCAAGATGTTGTACCGACTAT 59.290 41.667 9.50 0.00 32.72 2.12
130 131 5.889853 AGTCCAAGATGTTGTACCGACTATA 59.110 40.000 9.50 0.00 32.72 1.31
131 132 6.379133 AGTCCAAGATGTTGTACCGACTATAA 59.621 38.462 9.50 0.00 32.72 0.98
132 133 6.474751 GTCCAAGATGTTGTACCGACTATAAC 59.525 42.308 1.49 0.00 30.95 1.89
133 134 6.153170 TCCAAGATGTTGTACCGACTATAACA 59.847 38.462 1.49 0.00 39.84 2.41
134 135 6.475727 CCAAGATGTTGTACCGACTATAACAG 59.524 42.308 1.49 0.00 39.16 3.16
135 136 7.255569 CAAGATGTTGTACCGACTATAACAGA 58.744 38.462 0.00 0.00 39.16 3.41
136 137 7.584122 AGATGTTGTACCGACTATAACAGAT 57.416 36.000 7.90 0.00 39.16 2.90
137 138 7.426410 AGATGTTGTACCGACTATAACAGATG 58.574 38.462 7.90 0.00 39.16 2.90
138 139 5.345702 TGTTGTACCGACTATAACAGATGC 58.654 41.667 0.00 0.00 32.97 3.91
139 140 5.126545 TGTTGTACCGACTATAACAGATGCT 59.873 40.000 0.00 0.00 32.97 3.79
140 141 6.319405 TGTTGTACCGACTATAACAGATGCTA 59.681 38.462 0.00 0.00 32.97 3.49
141 142 6.309712 TGTACCGACTATAACAGATGCTAC 57.690 41.667 0.00 0.00 0.00 3.58
142 143 6.060136 TGTACCGACTATAACAGATGCTACT 58.940 40.000 0.00 0.00 0.00 2.57
143 144 7.219322 TGTACCGACTATAACAGATGCTACTA 58.781 38.462 0.00 0.00 0.00 1.82
144 145 6.804770 ACCGACTATAACAGATGCTACTAG 57.195 41.667 0.00 0.00 0.00 2.57
145 146 6.297582 ACCGACTATAACAGATGCTACTAGT 58.702 40.000 0.00 0.00 0.00 2.57
146 147 6.205076 ACCGACTATAACAGATGCTACTAGTG 59.795 42.308 5.39 0.00 0.00 2.74
147 148 6.348622 CCGACTATAACAGATGCTACTAGTGG 60.349 46.154 5.39 3.15 0.00 4.00
148 149 6.334102 ACTATAACAGATGCTACTAGTGGC 57.666 41.667 23.17 23.17 37.60 5.01
149 150 2.586258 AACAGATGCTACTAGTGGCG 57.414 50.000 24.04 13.36 40.17 5.69
150 151 1.763968 ACAGATGCTACTAGTGGCGA 58.236 50.000 24.04 14.61 40.17 5.54
151 152 1.405821 ACAGATGCTACTAGTGGCGAC 59.594 52.381 24.04 19.45 40.17 5.19
152 153 0.663688 AGATGCTACTAGTGGCGACG 59.336 55.000 24.04 0.00 40.17 5.12
153 154 0.935366 GATGCTACTAGTGGCGACGC 60.935 60.000 24.04 12.43 40.17 5.19
163 164 3.177249 GGCGACGCCGTGAGTTAC 61.177 66.667 25.24 0.00 39.62 2.50
164 165 2.429571 GCGACGCCGTGAGTTACA 60.430 61.111 9.14 0.00 38.24 2.41
165 166 2.017783 GCGACGCCGTGAGTTACAA 61.018 57.895 9.14 0.00 38.24 2.41
166 167 1.771044 CGACGCCGTGAGTTACAAC 59.229 57.895 0.00 0.00 0.00 3.32
167 168 0.935831 CGACGCCGTGAGTTACAACA 60.936 55.000 0.00 0.00 0.00 3.33
168 169 0.505655 GACGCCGTGAGTTACAACAC 59.494 55.000 0.00 0.00 0.00 3.32
169 170 0.877213 ACGCCGTGAGTTACAACACC 60.877 55.000 0.00 0.00 34.05 4.16
170 171 0.876777 CGCCGTGAGTTACAACACCA 60.877 55.000 7.00 0.00 34.05 4.17
171 172 0.584876 GCCGTGAGTTACAACACCAC 59.415 55.000 7.00 7.27 34.05 4.16
172 173 1.942677 CCGTGAGTTACAACACCACA 58.057 50.000 13.96 0.00 35.74 4.17
173 174 1.595794 CCGTGAGTTACAACACCACAC 59.404 52.381 13.96 0.00 35.74 3.82
174 175 2.546778 CGTGAGTTACAACACCACACT 58.453 47.619 13.96 0.00 35.74 3.55
175 176 2.284150 CGTGAGTTACAACACCACACTG 59.716 50.000 13.96 0.00 35.74 3.66
176 177 3.527533 GTGAGTTACAACACCACACTGA 58.472 45.455 10.69 0.00 35.91 3.41
177 178 3.555956 GTGAGTTACAACACCACACTGAG 59.444 47.826 10.69 0.00 35.91 3.35
178 179 3.131396 GAGTTACAACACCACACTGAGG 58.869 50.000 0.00 0.00 0.00 3.86
179 180 2.769663 AGTTACAACACCACACTGAGGA 59.230 45.455 0.00 0.00 0.00 3.71
180 181 3.391296 AGTTACAACACCACACTGAGGAT 59.609 43.478 0.00 0.00 0.00 3.24
181 182 2.260844 ACAACACCACACTGAGGATG 57.739 50.000 0.00 0.00 0.00 3.51
182 183 0.877071 CAACACCACACTGAGGATGC 59.123 55.000 0.00 0.00 0.00 3.91
183 184 0.767375 AACACCACACTGAGGATGCT 59.233 50.000 0.00 0.00 0.00 3.79
184 185 0.035881 ACACCACACTGAGGATGCTG 59.964 55.000 0.00 0.00 0.00 4.41
185 186 0.322648 CACCACACTGAGGATGCTGA 59.677 55.000 0.00 0.00 0.00 4.26
186 187 1.059098 ACCACACTGAGGATGCTGAA 58.941 50.000 0.00 0.00 0.00 3.02
187 188 1.421268 ACCACACTGAGGATGCTGAAA 59.579 47.619 0.00 0.00 0.00 2.69
188 189 2.040813 ACCACACTGAGGATGCTGAAAT 59.959 45.455 0.00 0.00 0.00 2.17
189 190 2.681848 CCACACTGAGGATGCTGAAATC 59.318 50.000 0.00 0.00 0.00 2.17
190 191 3.340928 CACACTGAGGATGCTGAAATCA 58.659 45.455 0.00 0.00 0.00 2.57
191 192 3.374367 CACACTGAGGATGCTGAAATCAG 59.626 47.826 6.05 6.05 46.40 2.90
200 201 2.827604 CTGAAATCAGCGACCGTGT 58.172 52.632 0.00 0.00 37.15 4.49
201 202 1.990799 CTGAAATCAGCGACCGTGTA 58.009 50.000 0.00 0.00 37.15 2.90
202 203 2.540515 CTGAAATCAGCGACCGTGTAT 58.459 47.619 0.00 0.00 37.15 2.29
203 204 2.267426 TGAAATCAGCGACCGTGTATG 58.733 47.619 0.00 0.00 0.00 2.39
204 205 1.004927 GAAATCAGCGACCGTGTATGC 60.005 52.381 0.00 0.00 0.00 3.14
205 206 0.175760 AATCAGCGACCGTGTATGCT 59.824 50.000 0.00 0.00 38.43 3.79
206 207 1.029681 ATCAGCGACCGTGTATGCTA 58.970 50.000 0.00 0.00 35.56 3.49
207 208 0.099968 TCAGCGACCGTGTATGCTAC 59.900 55.000 0.00 0.00 35.56 3.58
208 209 0.179148 CAGCGACCGTGTATGCTACA 60.179 55.000 0.00 0.00 35.56 2.74
209 210 0.528924 AGCGACCGTGTATGCTACAA 59.471 50.000 0.00 0.00 40.93 2.41
210 211 1.136305 AGCGACCGTGTATGCTACAAT 59.864 47.619 0.00 0.00 40.93 2.71
211 212 1.521423 GCGACCGTGTATGCTACAATC 59.479 52.381 0.00 0.00 40.93 2.67
212 213 1.779157 CGACCGTGTATGCTACAATCG 59.221 52.381 0.00 5.19 40.93 3.34
214 215 2.218953 CCGTGTATGCTACAATCGGT 57.781 50.000 12.83 0.00 41.01 4.69
215 216 2.546778 CCGTGTATGCTACAATCGGTT 58.453 47.619 12.83 0.00 41.01 4.44
216 217 2.284150 CCGTGTATGCTACAATCGGTTG 59.716 50.000 6.92 6.92 41.01 3.77
217 218 2.285602 CGTGTATGCTACAATCGGTTGC 60.286 50.000 8.70 0.00 46.54 4.17
218 219 2.936498 GTGTATGCTACAATCGGTTGCT 59.064 45.455 8.70 0.00 46.50 3.91
219 220 2.935849 TGTATGCTACAATCGGTTGCTG 59.064 45.455 8.70 2.44 46.50 4.41
220 221 0.734889 ATGCTACAATCGGTTGCTGC 59.265 50.000 8.70 13.36 46.50 5.25
221 222 0.321564 TGCTACAATCGGTTGCTGCT 60.322 50.000 21.33 1.76 46.50 4.24
222 223 0.097674 GCTACAATCGGTTGCTGCTG 59.902 55.000 8.70 0.00 43.61 4.41
223 224 0.729116 CTACAATCGGTTGCTGCTGG 59.271 55.000 8.70 0.00 38.96 4.85
224 225 0.676466 TACAATCGGTTGCTGCTGGG 60.676 55.000 8.70 0.00 38.96 4.45
225 226 3.064324 AATCGGTTGCTGCTGGGC 61.064 61.111 0.00 0.00 0.00 5.36
226 227 3.866379 AATCGGTTGCTGCTGGGCA 62.866 57.895 0.00 0.00 40.74 5.36
237 238 1.216064 TGCTGGGCAGAGATATTGGT 58.784 50.000 0.00 0.00 33.32 3.67
238 239 2.407562 TGCTGGGCAGAGATATTGGTA 58.592 47.619 0.00 0.00 33.32 3.25
239 240 2.104792 TGCTGGGCAGAGATATTGGTAC 59.895 50.000 0.00 0.00 33.32 3.34
240 241 2.551071 GCTGGGCAGAGATATTGGTACC 60.551 54.545 4.43 4.43 0.00 3.34
241 242 1.691976 TGGGCAGAGATATTGGTACCG 59.308 52.381 7.57 0.00 0.00 4.02
242 243 1.608283 GGGCAGAGATATTGGTACCGC 60.608 57.143 7.57 0.47 0.00 5.68
243 244 1.608283 GGCAGAGATATTGGTACCGCC 60.608 57.143 7.57 6.67 37.90 6.13
244 245 1.935300 GCAGAGATATTGGTACCGCCG 60.935 57.143 7.57 0.00 41.21 6.46
245 246 1.611977 CAGAGATATTGGTACCGCCGA 59.388 52.381 7.57 0.00 41.21 5.54
246 247 1.887198 AGAGATATTGGTACCGCCGAG 59.113 52.381 7.57 0.00 41.21 4.63
247 248 0.317479 AGATATTGGTACCGCCGAGC 59.683 55.000 7.57 0.00 41.21 5.03
248 249 0.032952 GATATTGGTACCGCCGAGCA 59.967 55.000 7.57 0.00 41.21 4.26
249 250 0.033504 ATATTGGTACCGCCGAGCAG 59.966 55.000 7.57 0.00 41.21 4.24
250 251 1.038681 TATTGGTACCGCCGAGCAGA 61.039 55.000 7.57 0.00 41.21 4.26
251 252 2.298158 ATTGGTACCGCCGAGCAGAG 62.298 60.000 7.57 0.00 41.21 3.35
252 253 4.208686 GGTACCGCCGAGCAGAGG 62.209 72.222 0.00 0.00 0.00 3.69
253 254 3.450115 GTACCGCCGAGCAGAGGT 61.450 66.667 2.66 2.66 40.52 3.85
254 255 3.138798 TACCGCCGAGCAGAGGTC 61.139 66.667 0.27 0.00 38.12 3.85
255 256 3.931190 TACCGCCGAGCAGAGGTCA 62.931 63.158 0.27 0.00 38.12 4.02
256 257 3.842923 CCGCCGAGCAGAGGTCAT 61.843 66.667 0.00 0.00 0.00 3.06
257 258 2.279120 CGCCGAGCAGAGGTCATC 60.279 66.667 0.00 0.00 0.00 2.92
258 259 2.279120 GCCGAGCAGAGGTCATCG 60.279 66.667 0.00 0.00 35.02 3.84
263 264 2.268920 GCAGAGGTCATCGGCCAA 59.731 61.111 2.24 0.00 42.63 4.52
264 265 1.817099 GCAGAGGTCATCGGCCAAG 60.817 63.158 2.24 0.00 42.63 3.61
265 266 1.900351 CAGAGGTCATCGGCCAAGA 59.100 57.895 2.24 0.00 0.00 3.02
266 267 0.460987 CAGAGGTCATCGGCCAAGAC 60.461 60.000 2.24 7.14 0.00 3.01
267 268 1.519455 GAGGTCATCGGCCAAGACG 60.519 63.158 2.24 0.00 34.09 4.18
268 269 2.227089 GAGGTCATCGGCCAAGACGT 62.227 60.000 2.24 8.86 34.61 4.34
269 270 1.810030 GGTCATCGGCCAAGACGTC 60.810 63.158 7.70 7.70 34.61 4.34
270 271 2.158959 GTCATCGGCCAAGACGTCG 61.159 63.158 10.46 0.00 34.61 5.12
271 272 2.885644 CATCGGCCAAGACGTCGG 60.886 66.667 10.46 7.56 34.61 4.79
272 273 3.066190 ATCGGCCAAGACGTCGGA 61.066 61.111 13.06 4.66 34.61 4.55
273 274 2.642254 ATCGGCCAAGACGTCGGAA 61.642 57.895 13.06 0.00 34.61 4.30
274 275 2.830704 ATCGGCCAAGACGTCGGAAC 62.831 60.000 13.06 3.70 34.61 3.62
275 276 2.029964 GGCCAAGACGTCGGAACA 59.970 61.111 13.06 0.00 0.00 3.18
276 277 2.027625 GGCCAAGACGTCGGAACAG 61.028 63.158 13.06 0.89 0.00 3.16
277 278 2.027625 GCCAAGACGTCGGAACAGG 61.028 63.158 13.06 9.48 0.00 4.00
278 279 2.027625 CCAAGACGTCGGAACAGGC 61.028 63.158 10.46 0.00 0.00 4.85
279 280 1.300620 CAAGACGTCGGAACAGGCA 60.301 57.895 10.46 0.00 0.00 4.75
280 281 1.006102 AAGACGTCGGAACAGGCAG 60.006 57.895 10.46 0.00 0.00 4.85
281 282 3.112709 GACGTCGGAACAGGCAGC 61.113 66.667 0.00 0.00 0.00 5.25
282 283 3.575351 GACGTCGGAACAGGCAGCT 62.575 63.158 0.00 0.00 0.00 4.24
283 284 2.811317 CGTCGGAACAGGCAGCTC 60.811 66.667 0.00 0.00 0.00 4.09
284 285 2.343758 GTCGGAACAGGCAGCTCA 59.656 61.111 0.00 0.00 0.00 4.26
285 286 1.078848 GTCGGAACAGGCAGCTCAT 60.079 57.895 0.00 0.00 0.00 2.90
286 287 1.078918 TCGGAACAGGCAGCTCATG 60.079 57.895 0.00 0.00 0.00 3.07
287 288 2.110967 CGGAACAGGCAGCTCATGG 61.111 63.158 0.00 0.00 0.00 3.66
288 289 1.001641 GGAACAGGCAGCTCATGGT 60.002 57.895 0.00 0.00 0.00 3.55
289 290 1.310933 GGAACAGGCAGCTCATGGTG 61.311 60.000 0.00 0.00 43.87 4.17
296 297 2.673523 AGCTCATGGTGCTGGGAC 59.326 61.111 12.16 0.00 39.56 4.46
297 298 2.439156 GCTCATGGTGCTGGGACC 60.439 66.667 4.29 4.29 36.43 4.46
302 303 4.263572 TGGTGCTGGGACCAACGG 62.264 66.667 11.43 0.00 43.31 4.44
310 311 4.446413 GGACCAACGGCGTCGGAT 62.446 66.667 25.93 7.99 41.39 4.18
311 312 3.186047 GACCAACGGCGTCGGATG 61.186 66.667 25.93 13.49 41.39 3.51
312 313 3.927163 GACCAACGGCGTCGGATGT 62.927 63.158 25.93 11.59 41.39 3.06
313 314 2.740826 CCAACGGCGTCGGATGTT 60.741 61.111 12.64 0.00 41.39 2.71
314 315 2.736682 CCAACGGCGTCGGATGTTC 61.737 63.158 12.64 0.00 41.39 3.18
315 316 1.736645 CAACGGCGTCGGATGTTCT 60.737 57.895 15.17 0.00 41.39 3.01
316 317 1.736645 AACGGCGTCGGATGTTCTG 60.737 57.895 15.17 0.00 41.39 3.02
317 318 2.149803 AACGGCGTCGGATGTTCTGA 62.150 55.000 15.17 0.00 41.39 3.27
318 319 2.158959 CGGCGTCGGATGTTCTGAC 61.159 63.158 0.00 6.43 46.58 3.51
323 324 1.656652 GTCGGATGTTCTGACCATGG 58.343 55.000 11.19 11.19 44.85 3.66
324 325 0.107703 TCGGATGTTCTGACCATGGC 60.108 55.000 13.04 5.35 0.00 4.40
325 326 0.392863 CGGATGTTCTGACCATGGCA 60.393 55.000 13.04 10.18 0.00 4.92
326 327 1.748244 CGGATGTTCTGACCATGGCAT 60.748 52.381 13.04 5.76 0.00 4.40
327 328 2.381911 GGATGTTCTGACCATGGCATT 58.618 47.619 13.04 0.00 0.00 3.56
328 329 2.762327 GGATGTTCTGACCATGGCATTT 59.238 45.455 13.04 0.00 0.00 2.32
329 330 3.429822 GGATGTTCTGACCATGGCATTTG 60.430 47.826 13.04 0.00 0.00 2.32
330 331 1.894466 TGTTCTGACCATGGCATTTGG 59.106 47.619 13.04 5.58 40.26 3.28
331 332 1.205417 GTTCTGACCATGGCATTTGGG 59.795 52.381 13.04 6.44 38.64 4.12
332 333 0.971959 TCTGACCATGGCATTTGGGC 60.972 55.000 13.04 9.00 43.11 5.36
348 349 3.912899 GGCACCACCAAATTTCCTG 57.087 52.632 0.00 0.00 38.86 3.86
349 350 0.321346 GGCACCACCAAATTTCCTGG 59.679 55.000 8.55 8.55 40.05 4.45
350 351 1.337118 GCACCACCAAATTTCCTGGA 58.663 50.000 14.96 0.00 37.40 3.86
351 352 1.273327 GCACCACCAAATTTCCTGGAG 59.727 52.381 14.96 9.62 37.40 3.86
352 353 1.273327 CACCACCAAATTTCCTGGAGC 59.727 52.381 14.96 0.00 37.40 4.70
353 354 0.897621 CCACCAAATTTCCTGGAGCC 59.102 55.000 1.57 0.00 37.40 4.70
354 355 0.527565 CACCAAATTTCCTGGAGCCG 59.472 55.000 1.57 0.00 37.40 5.52
355 356 0.404040 ACCAAATTTCCTGGAGCCGA 59.596 50.000 1.57 0.00 37.40 5.54
356 357 1.098050 CCAAATTTCCTGGAGCCGAG 58.902 55.000 0.00 0.00 35.85 4.63
357 358 1.340017 CCAAATTTCCTGGAGCCGAGA 60.340 52.381 0.00 0.00 35.85 4.04
358 359 2.648059 CAAATTTCCTGGAGCCGAGAT 58.352 47.619 0.00 0.00 0.00 2.75
359 360 2.615912 CAAATTTCCTGGAGCCGAGATC 59.384 50.000 0.00 0.00 0.00 2.75
360 361 0.390860 ATTTCCTGGAGCCGAGATCG 59.609 55.000 0.00 0.00 39.44 3.69
371 372 2.510948 CGAGATCGGCATGTGCTAC 58.489 57.895 4.84 0.00 41.70 3.58
372 373 0.249031 CGAGATCGGCATGTGCTACA 60.249 55.000 4.84 0.00 41.70 2.74
373 374 1.802508 CGAGATCGGCATGTGCTACAA 60.803 52.381 4.84 0.00 41.70 2.41
374 375 1.594862 GAGATCGGCATGTGCTACAAC 59.405 52.381 4.84 0.00 41.70 3.32
375 376 0.657840 GATCGGCATGTGCTACAACC 59.342 55.000 4.84 0.00 41.70 3.77
376 377 1.089481 ATCGGCATGTGCTACAACCG 61.089 55.000 18.95 18.95 46.69 4.44
377 378 2.032634 CGGCATGTGCTACAACCGT 61.033 57.895 17.77 0.00 42.97 4.83
378 379 1.501741 GGCATGTGCTACAACCGTG 59.498 57.895 4.84 0.00 41.70 4.94
379 380 1.501741 GCATGTGCTACAACCGTGG 59.498 57.895 0.00 0.00 38.21 4.94
380 381 1.234615 GCATGTGCTACAACCGTGGT 61.235 55.000 0.00 0.00 38.21 4.16
381 382 0.796312 CATGTGCTACAACCGTGGTC 59.204 55.000 0.00 0.00 0.00 4.02
382 383 0.685097 ATGTGCTACAACCGTGGTCT 59.315 50.000 0.00 0.00 0.00 3.85
383 384 0.249699 TGTGCTACAACCGTGGTCTG 60.250 55.000 0.00 0.00 0.00 3.51
384 385 1.301401 TGCTACAACCGTGGTCTGC 60.301 57.895 0.00 0.00 0.00 4.26
385 386 2.380410 GCTACAACCGTGGTCTGCG 61.380 63.158 0.00 0.00 0.00 5.18
391 392 2.590575 CCGTGGTCTGCGGTTGTT 60.591 61.111 0.00 0.00 43.84 2.83
392 393 2.631428 CGTGGTCTGCGGTTGTTG 59.369 61.111 0.00 0.00 0.00 3.33
393 394 2.177580 CGTGGTCTGCGGTTGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
394 395 1.355210 GTGGTCTGCGGTTGTTGTG 59.645 57.895 0.00 0.00 0.00 3.33
395 396 1.092921 GTGGTCTGCGGTTGTTGTGA 61.093 55.000 0.00 0.00 0.00 3.58
396 397 1.092921 TGGTCTGCGGTTGTTGTGAC 61.093 55.000 0.00 0.00 0.00 3.67
397 398 1.647084 GTCTGCGGTTGTTGTGACC 59.353 57.895 0.00 0.00 0.00 4.02
398 399 1.092921 GTCTGCGGTTGTTGTGACCA 61.093 55.000 0.00 0.00 36.99 4.02
399 400 0.813610 TCTGCGGTTGTTGTGACCAG 60.814 55.000 0.00 0.00 36.99 4.00
400 401 2.331451 GCGGTTGTTGTGACCAGC 59.669 61.111 0.00 0.00 36.99 4.85
401 402 2.186826 GCGGTTGTTGTGACCAGCT 61.187 57.895 0.00 0.00 36.99 4.24
402 403 0.882927 GCGGTTGTTGTGACCAGCTA 60.883 55.000 0.00 0.00 36.99 3.32
403 404 0.865769 CGGTTGTTGTGACCAGCTAC 59.134 55.000 0.00 0.00 36.99 3.58
404 405 0.865769 GGTTGTTGTGACCAGCTACG 59.134 55.000 0.00 0.00 37.14 3.51
405 406 1.539496 GGTTGTTGTGACCAGCTACGA 60.539 52.381 0.00 0.00 37.14 3.43
406 407 1.525619 GTTGTTGTGACCAGCTACGAC 59.474 52.381 0.00 0.00 0.00 4.34
407 408 0.747852 TGTTGTGACCAGCTACGACA 59.252 50.000 3.69 3.69 38.52 4.35
408 409 1.137513 GTTGTGACCAGCTACGACAC 58.862 55.000 8.11 8.11 32.61 3.67
409 410 0.032952 TTGTGACCAGCTACGACACC 59.967 55.000 11.24 0.00 0.00 4.16
410 411 1.443872 GTGACCAGCTACGACACCG 60.444 63.158 0.00 0.00 42.50 4.94
420 421 2.509336 CGACACCGTCCTGATGGC 60.509 66.667 5.29 0.00 41.20 4.40
421 422 2.662596 GACACCGTCCTGATGGCA 59.337 61.111 5.29 0.00 41.20 4.92
422 423 1.003839 GACACCGTCCTGATGGCAA 60.004 57.895 5.29 0.00 41.20 4.52
423 424 1.298859 GACACCGTCCTGATGGCAAC 61.299 60.000 5.29 0.00 41.20 4.17
454 455 3.319198 ATCGTCCCGGCAACCACT 61.319 61.111 0.00 0.00 0.00 4.00
455 456 3.310860 ATCGTCCCGGCAACCACTC 62.311 63.158 0.00 0.00 0.00 3.51
457 458 4.309950 GTCCCGGCAACCACTCGT 62.310 66.667 0.00 0.00 0.00 4.18
478 483 0.846693 GGTACCAAGGATGCTGGGAT 59.153 55.000 15.82 1.27 38.36 3.85
486 491 3.405093 GATGCTGGGATCGGCCACA 62.405 63.158 2.24 0.00 44.42 4.17
487 492 2.687418 GATGCTGGGATCGGCCACAT 62.687 60.000 2.24 0.00 44.42 3.21
500 505 1.270518 GGCCACATCAGATGCTACGAT 60.271 52.381 10.59 0.00 0.00 3.73
503 508 1.718178 CACATCAGATGCTACGATCGC 59.282 52.381 16.60 0.00 0.00 4.58
504 509 1.611006 ACATCAGATGCTACGATCGCT 59.389 47.619 16.60 5.20 0.00 4.93
505 510 2.814336 ACATCAGATGCTACGATCGCTA 59.186 45.455 16.60 6.15 0.00 4.26
513 518 1.444836 CTACGATCGCTAGAGAGGGG 58.555 60.000 16.60 0.00 36.30 4.79
517 522 1.884497 CGATCGCTAGAGAGGGGATGT 60.884 57.143 0.26 0.00 36.68 3.06
550 559 2.874701 GCACTATGATGGCGATGAAGTT 59.125 45.455 0.00 0.00 0.00 2.66
553 562 4.333649 CACTATGATGGCGATGAAGTTGTT 59.666 41.667 0.00 0.00 0.00 2.83
556 565 3.411446 TGATGGCGATGAAGTTGTTCTT 58.589 40.909 0.00 0.00 39.32 2.52
563 572 4.935885 GATGAAGTTGTTCTTGATCGCT 57.064 40.909 0.00 0.00 37.13 4.93
582 591 4.090057 GAAGCAGCGACAACGGGC 62.090 66.667 0.00 0.00 40.15 6.13
603 616 1.079474 TGCAAGCGATAACGAGCCA 60.079 52.632 0.00 0.00 42.66 4.75
608 621 0.801067 AGCGATAACGAGCCAACGAC 60.801 55.000 0.00 0.00 42.66 4.34
612 625 0.801067 ATAACGAGCCAACGACGAGC 60.801 55.000 0.00 1.06 37.03 5.03
620 633 1.065102 GCCAACGACGAGCATCTAGTA 59.935 52.381 0.00 0.00 0.00 1.82
643 656 4.382320 GCGAGTTGCGGGTGGGTA 62.382 66.667 0.00 0.00 41.29 3.69
651 664 3.379445 CGGGTGGGTACTGCGTCT 61.379 66.667 0.00 0.00 0.00 4.18
654 667 2.633509 GGTGGGTACTGCGTCTCGT 61.634 63.158 0.00 0.00 0.00 4.18
655 668 1.288127 GTGGGTACTGCGTCTCGTT 59.712 57.895 0.00 0.00 0.00 3.85
656 669 1.007336 GTGGGTACTGCGTCTCGTTG 61.007 60.000 0.00 0.00 0.00 4.10
659 672 0.240411 GGTACTGCGTCTCGTTGTCT 59.760 55.000 0.00 0.00 0.00 3.41
699 713 4.647654 TCGAAGACCAACGCTCAC 57.352 55.556 0.00 0.00 0.00 3.51
703 717 1.583054 GAAGACCAACGCTCACTTGT 58.417 50.000 0.00 0.00 0.00 3.16
715 729 4.015406 ACTTGTGATGCGGGCCGA 62.015 61.111 33.44 15.74 0.00 5.54
735 749 3.687125 GACGATCCCCCTTTTCTTTTCT 58.313 45.455 0.00 0.00 0.00 2.52
738 752 4.079253 CGATCCCCCTTTTCTTTTCTCAA 58.921 43.478 0.00 0.00 0.00 3.02
739 753 4.082733 CGATCCCCCTTTTCTTTTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
740 754 4.258457 TCCCCCTTTTCTTTTCTCAACA 57.742 40.909 0.00 0.00 0.00 3.33
756 770 2.879168 CATGGAGCGCACATGCAA 59.121 55.556 25.24 0.00 39.23 4.08
772 786 2.061220 CAACAGAGAGGCCCAGTCA 58.939 57.895 0.00 0.00 0.00 3.41
806 820 3.306502 GGGTTGACTTGATCCAACGACTA 60.307 47.826 6.51 0.00 42.47 2.59
830 846 2.193248 CCCGAATCCAAGGGCTCC 59.807 66.667 0.00 0.00 41.34 4.70
855 871 3.117474 AGGTGACCGATCCAGAATCTAGA 60.117 47.826 0.00 0.00 31.68 2.43
969 1002 3.175710 ACCACCACCACACCCCTC 61.176 66.667 0.00 0.00 0.00 4.30
970 1003 2.854032 CCACCACCACACCCCTCT 60.854 66.667 0.00 0.00 0.00 3.69
974 1007 2.347490 CACCACACCCCTCTTCCG 59.653 66.667 0.00 0.00 0.00 4.30
975 1008 2.928396 ACCACACCCCTCTTCCGG 60.928 66.667 0.00 0.00 0.00 5.14
976 1009 2.928396 CCACACCCCTCTTCCGGT 60.928 66.667 0.00 0.00 0.00 5.28
980 1013 2.039137 ACCCCTCTTCCGGTCTCC 59.961 66.667 0.00 0.00 0.00 3.71
981 1014 2.764547 CCCCTCTTCCGGTCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
982 1015 2.764547 CCCTCTTCCGGTCTCCCC 60.765 72.222 0.00 0.00 0.00 4.81
983 1016 2.364961 CCTCTTCCGGTCTCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
984 1017 1.758906 CCTCTTCCGGTCTCCCCTC 60.759 68.421 0.00 0.00 0.00 4.30
985 1018 1.758906 CTCTTCCGGTCTCCCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
986 1019 2.764547 CTTCCGGTCTCCCCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
987 1020 4.410033 TTCCGGTCTCCCCTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
990 1023 4.400251 CGGTCTCCCCTCCCCTGT 62.400 72.222 0.00 0.00 0.00 4.00
991 1024 2.125225 GGTCTCCCCTCCCCTGTT 59.875 66.667 0.00 0.00 0.00 3.16
1018 1092 2.048603 GCCCGAGCTTGCCAAAGAT 61.049 57.895 0.00 0.00 35.19 2.40
1074 1157 4.025858 GGCTCCAGGCTGCAGTCA 62.026 66.667 22.50 0.00 41.46 3.41
1075 1158 2.436292 GCTCCAGGCTGCAGTCAG 60.436 66.667 22.50 13.12 43.16 3.51
1088 1175 1.010935 CAGTCAGCGTACCACTGCAG 61.011 60.000 13.48 13.48 35.04 4.41
1289 1412 2.342650 GGTACGTACCGAGGCCACA 61.343 63.158 28.00 0.00 36.50 4.17
1347 1502 3.214328 CTGTGTGTGCTAGAAAAAGGGT 58.786 45.455 0.00 0.00 0.00 4.34
1385 1540 0.250597 AAGTGTTCGGTGTTAGGCCC 60.251 55.000 0.00 0.00 0.00 5.80
1437 1612 9.334693 CTTTGTATTTGCTTGAAGAGTAATCAC 57.665 33.333 0.00 0.00 29.74 3.06
1438 1613 7.377766 TGTATTTGCTTGAAGAGTAATCACC 57.622 36.000 0.00 0.00 29.74 4.02
1442 1617 5.227569 TGCTTGAAGAGTAATCACCTGAA 57.772 39.130 0.00 0.00 0.00 3.02
1495 2889 1.499007 AGTTTGGGGAGGTGATGTGTT 59.501 47.619 0.00 0.00 0.00 3.32
1547 2948 2.235155 GAGAGGGAAAGACTGAACCTCC 59.765 54.545 13.21 4.94 46.93 4.30
1553 2954 2.044793 AAGACTGAACCTCCCATGGA 57.955 50.000 15.22 0.00 0.00 3.41
1554 2955 2.277008 AGACTGAACCTCCCATGGAT 57.723 50.000 15.22 0.00 0.00 3.41
1555 2956 2.566746 AGACTGAACCTCCCATGGATT 58.433 47.619 15.22 1.39 0.00 3.01
1556 2957 2.922283 AGACTGAACCTCCCATGGATTT 59.078 45.455 15.22 0.00 0.00 2.17
1557 2958 3.054065 AGACTGAACCTCCCATGGATTTC 60.054 47.826 15.22 10.14 0.00 2.17
1560 2961 2.649312 TGAACCTCCCATGGATTTCTGT 59.351 45.455 15.22 0.00 29.87 3.41
1562 2963 3.091633 ACCTCCCATGGATTTCTGTTG 57.908 47.619 15.22 0.00 0.00 3.33
1638 3072 4.764172 CCTCTGCAATCTAGCTTGTACTT 58.236 43.478 8.05 0.00 34.99 2.24
1671 3218 6.042638 AGAGAGCTAATCTTGTTAACAGCA 57.957 37.500 15.15 4.87 38.84 4.41
1724 3279 9.601217 CCTGTTTAATAGCATAGTTTACAGTCT 57.399 33.333 0.00 0.00 31.08 3.24
1873 3462 3.066621 AGCTGAATGACGCTTCAAAAACA 59.933 39.130 0.00 0.00 34.86 2.83
2004 3615 7.771183 TGCTGGATTAGGATTTATGTTGTTTC 58.229 34.615 0.00 0.00 0.00 2.78
2043 3655 2.037772 CAGGCCAGCGATTTATAGGTCT 59.962 50.000 5.01 0.00 33.92 3.85
2107 3719 7.326454 CAAAGATGTCTTCTTGGATCTCACTA 58.674 38.462 1.95 0.00 44.09 2.74
2264 3877 4.039973 TGAAGAGGTACATTTCTTGTCCGT 59.960 41.667 10.18 0.00 39.87 4.69
2269 3885 4.223032 AGGTACATTTCTTGTCCGTCTCAT 59.777 41.667 0.00 0.00 39.87 2.90
2271 3887 5.063564 GGTACATTTCTTGTCCGTCTCATTC 59.936 44.000 0.00 0.00 39.87 2.67
2272 3888 4.899502 ACATTTCTTGTCCGTCTCATTCT 58.100 39.130 0.00 0.00 30.89 2.40
2648 6158 0.462047 CCCCTATGAACACGTGAGCC 60.462 60.000 25.01 10.88 0.00 4.70
2666 6176 4.454504 TGAGCCTTCCTTCGTGTTTATTTC 59.545 41.667 0.00 0.00 0.00 2.17
2737 6248 5.064962 CCAACTGTAACAAACCGTCAAGTAA 59.935 40.000 0.00 0.00 0.00 2.24
2985 6741 2.234143 GCTGATATTTCAAGGCTCCCC 58.766 52.381 0.00 0.00 0.00 4.81
3165 6934 6.370433 TCGGAATTGCGATTTTATTCATCA 57.630 33.333 18.67 0.00 31.47 3.07
3166 6935 6.429624 TCGGAATTGCGATTTTATTCATCAG 58.570 36.000 18.67 0.00 31.47 2.90
3186 6957 6.174720 TCAGAGTCCACTGAACAATTAGTT 57.825 37.500 0.00 0.00 42.79 2.24
3233 7010 5.772825 TTACATGGGAAATAATGCTCTGC 57.227 39.130 0.00 0.00 0.00 4.26
3262 7039 6.649141 TCTGTTAATTATTGACTGCTGAACGT 59.351 34.615 0.00 0.00 0.00 3.99
3559 7346 3.472652 AGAAGTCATCGATCGTCTAGCT 58.527 45.455 15.94 5.66 0.00 3.32
3582 7374 6.203723 GCTCTACTACTTATTTTCTGCATGGG 59.796 42.308 0.00 0.00 0.00 4.00
3584 7376 7.272978 TCTACTACTTATTTTCTGCATGGGAC 58.727 38.462 0.00 0.00 0.00 4.46
3609 7401 4.251268 GTTACCTAGCCTGTTGTACCTTG 58.749 47.826 0.00 0.00 0.00 3.61
3900 11859 4.967575 GTGGAAATGTAACTCAAACACACG 59.032 41.667 0.00 0.00 0.00 4.49
3958 12090 8.206325 ACTCTGATGAACAATAGTAGCATTTG 57.794 34.615 0.00 0.00 0.00 2.32
4146 12302 1.006758 TCAAGAGGGACGTATCCTGGT 59.993 52.381 13.86 0.00 45.46 4.00
4152 12308 1.489230 GGGACGTATCCTGGTTCCAAT 59.511 52.381 0.00 0.00 45.46 3.16
4153 12309 2.092592 GGGACGTATCCTGGTTCCAATT 60.093 50.000 0.00 0.00 45.46 2.32
4154 12310 3.617284 GGACGTATCCTGGTTCCAATTT 58.383 45.455 0.00 0.00 42.45 1.82
4155 12311 4.014406 GGACGTATCCTGGTTCCAATTTT 58.986 43.478 0.00 0.00 42.45 1.82
4156 12312 4.461431 GGACGTATCCTGGTTCCAATTTTT 59.539 41.667 0.00 0.00 42.45 1.94
4197 12355 9.327529 GAATGAATGAAATCGAAGAATATCAGC 57.672 33.333 0.00 0.00 43.58 4.26
4202 12360 4.722203 AATCGAAGAATATCAGCGCAAG 57.278 40.909 11.47 0.72 43.58 4.01
4264 12452 6.259893 TCAACCAAAATTATTCCCAGGATCA 58.740 36.000 0.00 0.00 0.00 2.92
4275 12463 1.269448 CCCAGGATCAACAACAAACCG 59.731 52.381 0.00 0.00 0.00 4.44
4404 12596 2.746472 GCAGAGTGGTGAAGAAACCTGT 60.746 50.000 0.00 0.00 41.16 4.00
4514 12844 2.609244 GGAGTGAGTGAGACTGCTTGAC 60.609 54.545 0.00 0.00 0.00 3.18
4582 13043 7.994425 TGAAAGGTCAAGCTAATTACATCAA 57.006 32.000 0.00 0.00 0.00 2.57
4590 13051 8.066595 GTCAAGCTAATTACATCAATGTAGCAG 58.933 37.037 14.69 9.41 43.44 4.24
4618 13080 2.584391 GCCAACAGGTCGGAGGAGT 61.584 63.158 0.00 0.00 0.00 3.85
4624 13086 0.896019 CAGGTCGGAGGAGTGAGTGT 60.896 60.000 0.00 0.00 0.00 3.55
4625 13087 0.178958 AGGTCGGAGGAGTGAGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
4626 13088 1.075050 AGGTCGGAGGAGTGAGTGTTA 59.925 52.381 0.00 0.00 0.00 2.41
4627 13089 1.201880 GGTCGGAGGAGTGAGTGTTAC 59.798 57.143 0.00 0.00 0.00 2.50
4628 13090 2.161030 GTCGGAGGAGTGAGTGTTACT 58.839 52.381 0.00 0.00 0.00 2.24
4629 13091 2.095161 GTCGGAGGAGTGAGTGTTACTG 60.095 54.545 0.00 0.00 0.00 2.74
4630 13092 1.887198 CGGAGGAGTGAGTGTTACTGT 59.113 52.381 0.00 0.00 0.00 3.55
4648 13135 3.333680 ACTGTTATTCCCATTCACAGGGT 59.666 43.478 0.00 0.00 46.82 4.34
4940 13430 5.243730 TCACATTTCCCTGGAATTCAAGAAC 59.756 40.000 11.72 0.00 33.79 3.01
4941 13431 5.244626 CACATTTCCCTGGAATTCAAGAACT 59.755 40.000 11.72 0.00 33.79 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.463443 GGCCTAATTGTGTGAACATATATTTTC 57.537 33.333 0.00 4.89 0.00 2.29
22 23 8.976353 TGGCCTAATTGTGTGAACATATATTTT 58.024 29.630 3.32 0.00 0.00 1.82
23 24 8.532186 TGGCCTAATTGTGTGAACATATATTT 57.468 30.769 3.32 0.00 0.00 1.40
24 25 8.710749 ATGGCCTAATTGTGTGAACATATATT 57.289 30.769 3.32 0.00 0.00 1.28
25 26 7.394359 GGATGGCCTAATTGTGTGAACATATAT 59.606 37.037 3.32 0.00 0.00 0.86
26 27 6.714810 GGATGGCCTAATTGTGTGAACATATA 59.285 38.462 3.32 0.00 0.00 0.86
27 28 5.536161 GGATGGCCTAATTGTGTGAACATAT 59.464 40.000 3.32 0.00 0.00 1.78
28 29 4.887071 GGATGGCCTAATTGTGTGAACATA 59.113 41.667 3.32 0.00 0.00 2.29
29 30 3.701040 GGATGGCCTAATTGTGTGAACAT 59.299 43.478 3.32 0.00 0.00 2.71
30 31 3.088532 GGATGGCCTAATTGTGTGAACA 58.911 45.455 3.32 0.00 0.00 3.18
31 32 2.427095 GGGATGGCCTAATTGTGTGAAC 59.573 50.000 3.32 0.00 0.00 3.18
32 33 2.622977 GGGGATGGCCTAATTGTGTGAA 60.623 50.000 3.32 0.00 0.00 3.18
33 34 1.064017 GGGGATGGCCTAATTGTGTGA 60.064 52.381 3.32 0.00 0.00 3.58
34 35 1.402787 GGGGATGGCCTAATTGTGTG 58.597 55.000 3.32 0.00 0.00 3.82
35 36 0.106719 CGGGGATGGCCTAATTGTGT 60.107 55.000 3.32 0.00 0.00 3.72
36 37 1.455383 GCGGGGATGGCCTAATTGTG 61.455 60.000 3.32 0.00 0.00 3.33
37 38 1.152756 GCGGGGATGGCCTAATTGT 60.153 57.895 3.32 0.00 0.00 2.71
38 39 0.540365 ATGCGGGGATGGCCTAATTG 60.540 55.000 3.32 0.00 0.00 2.32
39 40 0.188342 AATGCGGGGATGGCCTAATT 59.812 50.000 3.32 0.00 0.00 1.40
40 41 0.188342 AAATGCGGGGATGGCCTAAT 59.812 50.000 3.32 0.00 0.00 1.73
41 42 0.754957 CAAATGCGGGGATGGCCTAA 60.755 55.000 3.32 0.00 0.00 2.69
42 43 1.152777 CAAATGCGGGGATGGCCTA 60.153 57.895 3.32 0.00 0.00 3.93
43 44 2.442643 CAAATGCGGGGATGGCCT 60.443 61.111 3.32 0.00 0.00 5.19
44 45 4.225703 GCAAATGCGGGGATGGCC 62.226 66.667 0.00 0.00 0.00 5.36
45 46 3.016541 TTGCAAATGCGGGGATGGC 62.017 57.895 0.00 0.00 45.83 4.40
46 47 1.153588 GTTGCAAATGCGGGGATGG 60.154 57.895 0.00 0.00 45.83 3.51
47 48 0.458889 CAGTTGCAAATGCGGGGATG 60.459 55.000 14.60 0.00 45.83 3.51
48 49 1.606885 CCAGTTGCAAATGCGGGGAT 61.607 55.000 21.00 0.00 45.83 3.85
49 50 2.274645 CCAGTTGCAAATGCGGGGA 61.275 57.895 21.00 0.00 45.83 4.81
50 51 2.262292 CCAGTTGCAAATGCGGGG 59.738 61.111 21.00 3.92 45.83 5.73
51 52 2.262292 CCCAGTTGCAAATGCGGG 59.738 61.111 21.00 14.18 45.83 6.13
52 53 2.262292 CCCCAGTTGCAAATGCGG 59.738 61.111 21.00 18.15 45.83 5.69
53 54 2.432972 GCCCCAGTTGCAAATGCG 60.433 61.111 21.00 12.84 45.83 4.73
54 55 2.432972 CGCCCCAGTTGCAAATGC 60.433 61.111 21.00 9.37 42.50 3.56
55 56 2.432972 GCGCCCCAGTTGCAAATG 60.433 61.111 19.59 19.59 0.00 2.32
56 57 3.694538 GGCGCCCCAGTTGCAAAT 61.695 61.111 18.11 0.00 0.00 2.32
69 70 2.763627 AAAAAGGCATTGGACGGCGC 62.764 55.000 6.90 0.00 0.00 6.53
70 71 1.008361 CAAAAAGGCATTGGACGGCG 61.008 55.000 4.80 4.80 0.00 6.46
71 72 1.291184 GCAAAAAGGCATTGGACGGC 61.291 55.000 0.00 0.00 0.00 5.68
72 73 0.033228 TGCAAAAAGGCATTGGACGG 59.967 50.000 0.00 0.00 39.25 4.79
73 74 1.269726 ACTGCAAAAAGGCATTGGACG 60.270 47.619 0.00 0.00 43.97 4.79
74 75 2.137523 CACTGCAAAAAGGCATTGGAC 58.862 47.619 0.00 0.00 43.97 4.02
75 76 1.540797 GCACTGCAAAAAGGCATTGGA 60.541 47.619 7.45 0.00 42.63 3.53
76 77 0.869730 GCACTGCAAAAAGGCATTGG 59.130 50.000 7.45 0.00 42.63 3.16
77 78 1.873698 AGCACTGCAAAAAGGCATTG 58.126 45.000 3.30 0.00 44.47 2.82
78 79 2.611224 GCTAGCACTGCAAAAAGGCATT 60.611 45.455 10.63 0.00 43.97 3.56
79 80 1.067354 GCTAGCACTGCAAAAAGGCAT 60.067 47.619 10.63 0.00 43.97 4.40
80 81 0.314935 GCTAGCACTGCAAAAAGGCA 59.685 50.000 10.63 0.00 42.53 4.75
81 82 0.389037 GGCTAGCACTGCAAAAAGGC 60.389 55.000 18.24 3.94 0.00 4.35
82 83 0.961019 TGGCTAGCACTGCAAAAAGG 59.039 50.000 18.24 0.00 0.00 3.11
83 84 1.881973 TCTGGCTAGCACTGCAAAAAG 59.118 47.619 18.24 0.00 0.00 2.27
84 85 1.979855 TCTGGCTAGCACTGCAAAAA 58.020 45.000 18.24 0.00 0.00 1.94
85 86 1.814394 CATCTGGCTAGCACTGCAAAA 59.186 47.619 18.24 0.00 0.00 2.44
86 87 1.003464 TCATCTGGCTAGCACTGCAAA 59.997 47.619 18.24 0.00 0.00 3.68
87 88 0.614812 TCATCTGGCTAGCACTGCAA 59.385 50.000 18.24 0.00 0.00 4.08
88 89 0.177373 CTCATCTGGCTAGCACTGCA 59.823 55.000 18.24 4.02 0.00 4.41
89 90 0.177604 ACTCATCTGGCTAGCACTGC 59.822 55.000 18.24 0.00 0.00 4.40
90 91 1.202510 GGACTCATCTGGCTAGCACTG 60.203 57.143 18.24 10.04 0.00 3.66
91 92 1.118838 GGACTCATCTGGCTAGCACT 58.881 55.000 18.24 0.00 0.00 4.40
92 93 0.826715 TGGACTCATCTGGCTAGCAC 59.173 55.000 18.24 6.66 0.00 4.40
93 94 1.483827 CTTGGACTCATCTGGCTAGCA 59.516 52.381 18.24 1.68 0.00 3.49
94 95 1.759445 TCTTGGACTCATCTGGCTAGC 59.241 52.381 6.04 6.04 0.00 3.42
95 96 3.387374 ACATCTTGGACTCATCTGGCTAG 59.613 47.826 0.00 0.00 0.00 3.42
96 97 3.378512 ACATCTTGGACTCATCTGGCTA 58.621 45.455 0.00 0.00 0.00 3.93
97 98 2.194859 ACATCTTGGACTCATCTGGCT 58.805 47.619 0.00 0.00 0.00 4.75
98 99 2.681848 CAACATCTTGGACTCATCTGGC 59.318 50.000 0.00 0.00 0.00 4.85
99 100 3.947868 ACAACATCTTGGACTCATCTGG 58.052 45.455 0.00 0.00 0.00 3.86
100 101 4.872691 GGTACAACATCTTGGACTCATCTG 59.127 45.833 0.00 0.00 40.70 2.90
101 102 4.382040 CGGTACAACATCTTGGACTCATCT 60.382 45.833 0.00 0.00 40.70 2.90
102 103 3.865745 CGGTACAACATCTTGGACTCATC 59.134 47.826 0.00 0.00 40.70 2.92
103 104 3.513912 TCGGTACAACATCTTGGACTCAT 59.486 43.478 0.00 0.00 40.70 2.90
104 105 2.894765 TCGGTACAACATCTTGGACTCA 59.105 45.455 0.00 0.00 40.70 3.41
105 106 3.056749 AGTCGGTACAACATCTTGGACTC 60.057 47.826 0.00 0.00 40.70 3.36
106 107 2.897969 AGTCGGTACAACATCTTGGACT 59.102 45.455 0.00 0.00 40.70 3.85
107 108 3.314541 AGTCGGTACAACATCTTGGAC 57.685 47.619 0.00 0.00 40.21 4.02
108 109 6.153170 TGTTATAGTCGGTACAACATCTTGGA 59.847 38.462 0.00 0.00 0.00 3.53
109 110 6.334989 TGTTATAGTCGGTACAACATCTTGG 58.665 40.000 0.00 0.00 0.00 3.61
110 111 7.255569 TCTGTTATAGTCGGTACAACATCTTG 58.744 38.462 0.00 0.00 0.00 3.02
111 112 7.400599 TCTGTTATAGTCGGTACAACATCTT 57.599 36.000 0.00 0.00 0.00 2.40
112 113 7.426410 CATCTGTTATAGTCGGTACAACATCT 58.574 38.462 0.00 0.00 0.00 2.90
113 114 6.144080 GCATCTGTTATAGTCGGTACAACATC 59.856 42.308 0.00 0.00 0.00 3.06
114 115 5.983720 GCATCTGTTATAGTCGGTACAACAT 59.016 40.000 0.00 0.00 0.00 2.71
115 116 5.126545 AGCATCTGTTATAGTCGGTACAACA 59.873 40.000 0.00 0.00 0.00 3.33
116 117 5.589192 AGCATCTGTTATAGTCGGTACAAC 58.411 41.667 0.00 0.00 0.00 3.32
117 118 5.847111 AGCATCTGTTATAGTCGGTACAA 57.153 39.130 0.00 0.00 0.00 2.41
118 119 6.060136 AGTAGCATCTGTTATAGTCGGTACA 58.940 40.000 0.00 0.00 36.24 2.90
119 120 6.557291 AGTAGCATCTGTTATAGTCGGTAC 57.443 41.667 0.00 0.00 35.15 3.34
120 121 7.387122 CACTAGTAGCATCTGTTATAGTCGGTA 59.613 40.741 0.00 0.00 0.00 4.02
121 122 6.205076 CACTAGTAGCATCTGTTATAGTCGGT 59.795 42.308 0.00 0.00 0.00 4.69
122 123 6.348622 CCACTAGTAGCATCTGTTATAGTCGG 60.349 46.154 0.00 0.00 0.00 4.79
123 124 6.604012 CCACTAGTAGCATCTGTTATAGTCG 58.396 44.000 0.00 0.00 0.00 4.18
124 125 6.383415 GCCACTAGTAGCATCTGTTATAGTC 58.617 44.000 8.52 0.00 0.00 2.59
125 126 5.048643 CGCCACTAGTAGCATCTGTTATAGT 60.049 44.000 13.78 0.00 0.00 2.12
126 127 5.181433 TCGCCACTAGTAGCATCTGTTATAG 59.819 44.000 13.78 0.00 0.00 1.31
127 128 5.048921 GTCGCCACTAGTAGCATCTGTTATA 60.049 44.000 13.78 0.00 0.00 0.98
128 129 3.889538 TCGCCACTAGTAGCATCTGTTAT 59.110 43.478 13.78 0.00 0.00 1.89
129 130 3.066342 GTCGCCACTAGTAGCATCTGTTA 59.934 47.826 13.78 0.00 0.00 2.41
130 131 2.100197 TCGCCACTAGTAGCATCTGTT 58.900 47.619 13.78 0.00 0.00 3.16
131 132 1.405821 GTCGCCACTAGTAGCATCTGT 59.594 52.381 13.78 0.00 0.00 3.41
132 133 1.598183 CGTCGCCACTAGTAGCATCTG 60.598 57.143 13.78 0.00 0.00 2.90
133 134 0.663688 CGTCGCCACTAGTAGCATCT 59.336 55.000 13.78 0.00 0.00 2.90
134 135 0.935366 GCGTCGCCACTAGTAGCATC 60.935 60.000 13.78 4.65 0.00 3.91
135 136 1.065928 GCGTCGCCACTAGTAGCAT 59.934 57.895 13.78 0.00 0.00 3.79
136 137 2.488355 GCGTCGCCACTAGTAGCA 59.512 61.111 13.78 0.00 0.00 3.49
146 147 3.177249 GTAACTCACGGCGTCGCC 61.177 66.667 26.69 26.69 46.75 5.54
147 148 2.017783 TTGTAACTCACGGCGTCGC 61.018 57.895 10.85 9.22 40.63 5.19
148 149 0.935831 TGTTGTAACTCACGGCGTCG 60.936 55.000 10.85 8.42 43.02 5.12
149 150 0.505655 GTGTTGTAACTCACGGCGTC 59.494 55.000 10.85 0.00 0.00 5.19
150 151 0.877213 GGTGTTGTAACTCACGGCGT 60.877 55.000 6.77 6.77 35.67 5.68
151 152 0.876777 TGGTGTTGTAACTCACGGCG 60.877 55.000 4.80 4.80 35.67 6.46
152 153 0.584876 GTGGTGTTGTAACTCACGGC 59.415 55.000 0.00 0.00 35.67 5.68
153 154 1.595794 GTGTGGTGTTGTAACTCACGG 59.404 52.381 12.97 0.00 36.94 4.94
154 155 2.284150 CAGTGTGGTGTTGTAACTCACG 59.716 50.000 12.97 0.00 36.94 4.35
155 156 3.527533 TCAGTGTGGTGTTGTAACTCAC 58.472 45.455 11.78 11.78 35.75 3.51
156 157 3.431626 CCTCAGTGTGGTGTTGTAACTCA 60.432 47.826 2.90 0.00 0.00 3.41
157 158 3.131396 CCTCAGTGTGGTGTTGTAACTC 58.869 50.000 2.90 0.00 0.00 3.01
158 159 2.769663 TCCTCAGTGTGGTGTTGTAACT 59.230 45.455 10.92 0.00 0.00 2.24
159 160 3.188159 TCCTCAGTGTGGTGTTGTAAC 57.812 47.619 10.92 0.00 0.00 2.50
160 161 3.738982 CATCCTCAGTGTGGTGTTGTAA 58.261 45.455 10.92 0.00 0.00 2.41
161 162 2.549992 GCATCCTCAGTGTGGTGTTGTA 60.550 50.000 10.92 0.00 0.00 2.41
162 163 1.815408 GCATCCTCAGTGTGGTGTTGT 60.815 52.381 10.92 0.00 0.00 3.32
163 164 0.877071 GCATCCTCAGTGTGGTGTTG 59.123 55.000 10.92 8.61 0.00 3.33
164 165 0.767375 AGCATCCTCAGTGTGGTGTT 59.233 50.000 10.92 4.66 0.00 3.32
165 166 0.035881 CAGCATCCTCAGTGTGGTGT 59.964 55.000 10.92 0.00 36.79 4.16
166 167 0.322648 TCAGCATCCTCAGTGTGGTG 59.677 55.000 10.92 7.60 41.36 4.17
167 168 1.059098 TTCAGCATCCTCAGTGTGGT 58.941 50.000 10.92 0.00 0.00 4.16
168 169 2.189594 TTTCAGCATCCTCAGTGTGG 57.810 50.000 4.78 4.78 0.00 4.17
169 170 3.340928 TGATTTCAGCATCCTCAGTGTG 58.659 45.455 0.00 0.00 0.00 3.82
170 171 3.607741 CTGATTTCAGCATCCTCAGTGT 58.392 45.455 0.00 0.00 37.15 3.55
182 183 1.990799 TACACGGTCGCTGATTTCAG 58.009 50.000 3.13 3.13 46.40 3.02
183 184 2.267426 CATACACGGTCGCTGATTTCA 58.733 47.619 0.00 0.00 0.00 2.69
184 185 1.004927 GCATACACGGTCGCTGATTTC 60.005 52.381 0.00 0.00 0.00 2.17
185 186 1.006832 GCATACACGGTCGCTGATTT 58.993 50.000 0.00 0.00 0.00 2.17
186 187 0.175760 AGCATACACGGTCGCTGATT 59.824 50.000 0.00 0.00 32.33 2.57
187 188 1.029681 TAGCATACACGGTCGCTGAT 58.970 50.000 0.00 0.00 35.93 2.90
188 189 0.099968 GTAGCATACACGGTCGCTGA 59.900 55.000 0.00 0.00 42.43 4.26
189 190 0.179148 TGTAGCATACACGGTCGCTG 60.179 55.000 0.00 0.00 46.14 5.18
190 191 2.186155 TGTAGCATACACGGTCGCT 58.814 52.632 0.00 0.00 46.14 4.93
191 192 4.798288 TGTAGCATACACGGTCGC 57.202 55.556 0.00 0.00 46.14 5.19
199 200 2.286418 GCAGCAACCGATTGTAGCATAC 60.286 50.000 3.81 0.00 43.42 2.39
200 201 1.939934 GCAGCAACCGATTGTAGCATA 59.060 47.619 3.81 0.00 38.17 3.14
201 202 0.734889 GCAGCAACCGATTGTAGCAT 59.265 50.000 3.81 0.00 38.17 3.79
202 203 0.321564 AGCAGCAACCGATTGTAGCA 60.322 50.000 10.29 0.00 39.02 3.49
203 204 0.097674 CAGCAGCAACCGATTGTAGC 59.902 55.000 0.00 0.67 38.17 3.58
204 205 0.729116 CCAGCAGCAACCGATTGTAG 59.271 55.000 0.00 0.00 38.17 2.74
205 206 0.676466 CCCAGCAGCAACCGATTGTA 60.676 55.000 0.00 0.00 38.17 2.41
206 207 1.973281 CCCAGCAGCAACCGATTGT 60.973 57.895 0.00 0.00 38.17 2.71
207 208 2.879907 CCCAGCAGCAACCGATTG 59.120 61.111 0.00 0.00 38.99 2.67
208 209 3.064324 GCCCAGCAGCAACCGATT 61.064 61.111 0.00 0.00 0.00 3.34
209 210 4.349503 TGCCCAGCAGCAACCGAT 62.350 61.111 0.00 0.00 40.56 4.18
218 219 1.216064 ACCAATATCTCTGCCCAGCA 58.784 50.000 0.00 0.00 36.92 4.41
219 220 2.551071 GGTACCAATATCTCTGCCCAGC 60.551 54.545 7.15 0.00 0.00 4.85
220 221 2.289072 CGGTACCAATATCTCTGCCCAG 60.289 54.545 13.54 0.00 0.00 4.45
221 222 1.691976 CGGTACCAATATCTCTGCCCA 59.308 52.381 13.54 0.00 0.00 5.36
222 223 1.608283 GCGGTACCAATATCTCTGCCC 60.608 57.143 13.54 0.00 0.00 5.36
223 224 1.608283 GGCGGTACCAATATCTCTGCC 60.608 57.143 13.54 9.28 42.11 4.85
224 225 1.797025 GGCGGTACCAATATCTCTGC 58.203 55.000 13.54 3.31 38.86 4.26
225 226 1.611977 TCGGCGGTACCAATATCTCTG 59.388 52.381 13.54 0.00 39.03 3.35
226 227 1.887198 CTCGGCGGTACCAATATCTCT 59.113 52.381 13.54 0.00 39.03 3.10
227 228 1.669211 GCTCGGCGGTACCAATATCTC 60.669 57.143 13.54 0.00 39.03 2.75
228 229 0.317479 GCTCGGCGGTACCAATATCT 59.683 55.000 13.54 0.00 39.03 1.98
229 230 0.032952 TGCTCGGCGGTACCAATATC 59.967 55.000 13.54 0.00 39.03 1.63
230 231 0.033504 CTGCTCGGCGGTACCAATAT 59.966 55.000 13.54 0.00 39.03 1.28
231 232 1.038681 TCTGCTCGGCGGTACCAATA 61.039 55.000 13.54 0.00 39.03 1.90
232 233 2.186903 CTGCTCGGCGGTACCAAT 59.813 61.111 13.54 0.00 39.03 3.16
233 234 2.992689 TCTGCTCGGCGGTACCAA 60.993 61.111 13.54 0.00 39.03 3.67
234 235 3.449227 CTCTGCTCGGCGGTACCA 61.449 66.667 13.54 0.00 39.03 3.25
235 236 4.208686 CCTCTGCTCGGCGGTACC 62.209 72.222 7.21 0.16 36.18 3.34
236 237 3.412879 GACCTCTGCTCGGCGGTAC 62.413 68.421 7.21 0.00 36.18 3.34
237 238 3.138798 GACCTCTGCTCGGCGGTA 61.139 66.667 7.21 0.00 36.18 4.02
239 240 3.781770 GATGACCTCTGCTCGGCGG 62.782 68.421 7.21 0.00 36.06 6.13
240 241 2.279120 GATGACCTCTGCTCGGCG 60.279 66.667 0.00 0.00 0.00 6.46
241 242 2.279120 CGATGACCTCTGCTCGGC 60.279 66.667 0.00 0.00 0.00 5.54
242 243 2.415010 CCGATGACCTCTGCTCGG 59.585 66.667 0.00 0.00 43.98 4.63
243 244 2.279120 GCCGATGACCTCTGCTCG 60.279 66.667 0.00 0.00 31.89 5.03
244 245 2.107953 GGCCGATGACCTCTGCTC 59.892 66.667 0.00 0.00 34.75 4.26
245 246 2.249413 CTTGGCCGATGACCTCTGCT 62.249 60.000 0.00 0.00 34.75 4.24
246 247 1.817099 CTTGGCCGATGACCTCTGC 60.817 63.158 0.00 0.00 33.66 4.26
247 248 0.460987 GTCTTGGCCGATGACCTCTG 60.461 60.000 10.37 0.00 0.00 3.35
248 249 1.901085 GTCTTGGCCGATGACCTCT 59.099 57.895 10.37 0.00 0.00 3.69
249 250 1.519455 CGTCTTGGCCGATGACCTC 60.519 63.158 14.29 0.00 0.00 3.85
250 251 2.227089 GACGTCTTGGCCGATGACCT 62.227 60.000 8.70 5.68 0.00 3.85
251 252 1.810030 GACGTCTTGGCCGATGACC 60.810 63.158 8.70 1.61 0.00 4.02
252 253 2.158959 CGACGTCTTGGCCGATGAC 61.159 63.158 14.70 9.20 0.00 3.06
253 254 2.180769 CGACGTCTTGGCCGATGA 59.819 61.111 14.70 0.00 0.00 2.92
254 255 2.829043 TTCCGACGTCTTGGCCGATG 62.829 60.000 14.70 0.00 0.00 3.84
255 256 2.642254 TTCCGACGTCTTGGCCGAT 61.642 57.895 14.70 0.00 0.00 4.18
256 257 3.296836 TTCCGACGTCTTGGCCGA 61.297 61.111 14.70 0.00 0.00 5.54
257 258 3.110178 GTTCCGACGTCTTGGCCG 61.110 66.667 14.70 0.00 0.00 6.13
258 259 2.027625 CTGTTCCGACGTCTTGGCC 61.028 63.158 14.70 0.00 0.00 5.36
259 260 2.027625 CCTGTTCCGACGTCTTGGC 61.028 63.158 14.70 2.22 0.00 4.52
260 261 2.027625 GCCTGTTCCGACGTCTTGG 61.028 63.158 14.70 8.62 0.00 3.61
261 262 1.284982 CTGCCTGTTCCGACGTCTTG 61.285 60.000 14.70 4.76 0.00 3.02
262 263 1.006102 CTGCCTGTTCCGACGTCTT 60.006 57.895 14.70 0.00 0.00 3.01
263 264 2.651361 CTGCCTGTTCCGACGTCT 59.349 61.111 14.70 0.00 0.00 4.18
264 265 3.112709 GCTGCCTGTTCCGACGTC 61.113 66.667 5.18 5.18 0.00 4.34
265 266 3.575351 GAGCTGCCTGTTCCGACGT 62.575 63.158 0.00 0.00 0.00 4.34
266 267 2.811317 GAGCTGCCTGTTCCGACG 60.811 66.667 0.00 0.00 0.00 5.12
267 268 1.078848 ATGAGCTGCCTGTTCCGAC 60.079 57.895 0.00 0.00 0.00 4.79
268 269 1.078918 CATGAGCTGCCTGTTCCGA 60.079 57.895 0.00 0.00 0.00 4.55
269 270 2.110967 CCATGAGCTGCCTGTTCCG 61.111 63.158 0.00 0.00 0.00 4.30
270 271 1.001641 ACCATGAGCTGCCTGTTCC 60.002 57.895 0.00 0.00 0.00 3.62
271 272 1.930908 GCACCATGAGCTGCCTGTTC 61.931 60.000 0.00 0.00 0.00 3.18
272 273 1.975407 GCACCATGAGCTGCCTGTT 60.975 57.895 0.00 0.00 0.00 3.16
273 274 2.360852 GCACCATGAGCTGCCTGT 60.361 61.111 0.00 0.00 0.00 4.00
274 275 2.045242 AGCACCATGAGCTGCCTG 60.045 61.111 11.18 0.00 41.61 4.85
279 280 2.673523 GTCCCAGCACCATGAGCT 59.326 61.111 6.78 6.78 44.62 4.09
280 281 2.439156 GGTCCCAGCACCATGAGC 60.439 66.667 0.00 0.00 36.32 4.26
281 282 0.962356 GTTGGTCCCAGCACCATGAG 60.962 60.000 0.00 0.00 46.21 2.90
282 283 1.074775 GTTGGTCCCAGCACCATGA 59.925 57.895 0.00 0.00 46.21 3.07
283 284 2.334946 CGTTGGTCCCAGCACCATG 61.335 63.158 1.04 0.00 46.21 3.66
284 285 2.034066 CGTTGGTCCCAGCACCAT 59.966 61.111 1.04 0.00 46.21 3.55
285 286 4.263572 CCGTTGGTCCCAGCACCA 62.264 66.667 1.04 0.00 45.25 4.17
293 294 4.446413 ATCCGACGCCGTTGGTCC 62.446 66.667 22.41 0.00 38.23 4.46
294 295 3.186047 CATCCGACGCCGTTGGTC 61.186 66.667 22.41 0.00 38.23 4.02
295 296 3.524648 AACATCCGACGCCGTTGGT 62.525 57.895 22.41 7.98 38.23 3.67
296 297 2.736682 GAACATCCGACGCCGTTGG 61.737 63.158 17.71 17.71 38.40 3.77
297 298 1.736645 AGAACATCCGACGCCGTTG 60.737 57.895 0.00 0.00 0.00 4.10
298 299 1.736645 CAGAACATCCGACGCCGTT 60.737 57.895 0.00 0.00 0.00 4.44
299 300 2.126071 CAGAACATCCGACGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
300 301 2.158959 GTCAGAACATCCGACGCCG 61.159 63.158 0.00 0.00 0.00 6.46
301 302 1.810030 GGTCAGAACATCCGACGCC 60.810 63.158 0.00 0.00 0.00 5.68
302 303 0.460284 ATGGTCAGAACATCCGACGC 60.460 55.000 0.00 0.00 0.00 5.19
303 304 1.280982 CATGGTCAGAACATCCGACG 58.719 55.000 0.00 0.00 0.00 5.12
304 305 1.656652 CCATGGTCAGAACATCCGAC 58.343 55.000 2.57 0.00 0.00 4.79
305 306 0.107703 GCCATGGTCAGAACATCCGA 60.108 55.000 14.67 0.00 0.00 4.55
306 307 0.392863 TGCCATGGTCAGAACATCCG 60.393 55.000 14.67 0.00 0.00 4.18
307 308 2.062971 ATGCCATGGTCAGAACATCC 57.937 50.000 14.67 0.00 0.00 3.51
308 309 3.429822 CCAAATGCCATGGTCAGAACATC 60.430 47.826 14.67 0.00 33.08 3.06
309 310 2.498481 CCAAATGCCATGGTCAGAACAT 59.502 45.455 14.67 3.93 33.08 2.71
310 311 1.894466 CCAAATGCCATGGTCAGAACA 59.106 47.619 14.67 1.28 33.08 3.18
311 312 1.205417 CCCAAATGCCATGGTCAGAAC 59.795 52.381 14.67 0.00 36.14 3.01
312 313 1.559368 CCCAAATGCCATGGTCAGAA 58.441 50.000 14.67 0.00 36.14 3.02
313 314 0.971959 GCCCAAATGCCATGGTCAGA 60.972 55.000 14.67 0.00 36.14 3.27
314 315 1.259142 TGCCCAAATGCCATGGTCAG 61.259 55.000 14.67 1.29 36.14 3.51
315 316 1.229114 TGCCCAAATGCCATGGTCA 60.229 52.632 14.67 12.37 36.14 4.02
316 317 1.218854 GTGCCCAAATGCCATGGTC 59.781 57.895 14.67 6.41 36.14 4.02
317 318 2.292559 GGTGCCCAAATGCCATGGT 61.293 57.895 14.67 0.00 36.14 3.55
318 319 2.291801 TGGTGCCCAAATGCCATGG 61.292 57.895 7.63 7.63 37.71 3.66
319 320 1.078988 GTGGTGCCCAAATGCCATG 60.079 57.895 0.00 0.00 34.18 3.66
320 321 2.292559 GGTGGTGCCCAAATGCCAT 61.293 57.895 0.00 0.00 34.18 4.40
321 322 2.921972 GGTGGTGCCCAAATGCCA 60.922 61.111 0.00 0.00 34.18 4.92
322 323 2.049627 TTTGGTGGTGCCCAAATGCC 62.050 55.000 1.38 0.00 46.80 4.40
323 324 1.449353 TTTGGTGGTGCCCAAATGC 59.551 52.632 1.38 0.00 46.80 3.56
327 328 0.761802 GGAAATTTGGTGGTGCCCAA 59.238 50.000 0.00 0.00 42.69 4.12
328 329 0.105246 AGGAAATTTGGTGGTGCCCA 60.105 50.000 0.00 0.00 36.04 5.36
329 330 0.321346 CAGGAAATTTGGTGGTGCCC 59.679 55.000 0.00 0.00 36.04 5.36
330 331 0.321346 CCAGGAAATTTGGTGGTGCC 59.679 55.000 0.00 0.00 37.90 5.01
331 332 1.273327 CTCCAGGAAATTTGGTGGTGC 59.727 52.381 12.93 0.00 37.02 5.01
332 333 1.273327 GCTCCAGGAAATTTGGTGGTG 59.727 52.381 12.93 11.89 37.02 4.17
333 334 1.632589 GCTCCAGGAAATTTGGTGGT 58.367 50.000 12.93 0.00 37.02 4.16
334 335 0.897621 GGCTCCAGGAAATTTGGTGG 59.102 55.000 0.00 2.02 37.02 4.61
335 336 0.527565 CGGCTCCAGGAAATTTGGTG 59.472 55.000 0.00 0.00 37.02 4.17
336 337 0.404040 TCGGCTCCAGGAAATTTGGT 59.596 50.000 0.00 0.00 37.02 3.67
337 338 1.098050 CTCGGCTCCAGGAAATTTGG 58.902 55.000 0.00 0.00 37.04 3.28
338 339 2.113860 TCTCGGCTCCAGGAAATTTG 57.886 50.000 0.00 0.00 0.00 2.32
339 340 2.743183 CGATCTCGGCTCCAGGAAATTT 60.743 50.000 0.00 0.00 35.37 1.82
340 341 1.202580 CGATCTCGGCTCCAGGAAATT 60.203 52.381 0.00 0.00 35.37 1.82
341 342 0.390860 CGATCTCGGCTCCAGGAAAT 59.609 55.000 0.00 0.00 35.37 2.17
342 343 1.816537 CGATCTCGGCTCCAGGAAA 59.183 57.895 0.00 0.00 35.37 3.13
343 344 3.526430 CGATCTCGGCTCCAGGAA 58.474 61.111 0.00 0.00 35.37 3.36
353 354 0.249031 TGTAGCACATGCCGATCTCG 60.249 55.000 0.00 0.00 43.38 4.04
354 355 1.594862 GTTGTAGCACATGCCGATCTC 59.405 52.381 0.00 0.00 43.38 2.75
355 356 1.656652 GTTGTAGCACATGCCGATCT 58.343 50.000 0.00 0.00 43.38 2.75
356 357 0.657840 GGTTGTAGCACATGCCGATC 59.342 55.000 0.00 0.00 43.38 3.69
357 358 1.089481 CGGTTGTAGCACATGCCGAT 61.089 55.000 18.44 0.00 44.24 4.18
358 359 1.739929 CGGTTGTAGCACATGCCGA 60.740 57.895 18.44 0.00 44.24 5.54
359 360 2.032634 ACGGTTGTAGCACATGCCG 61.033 57.895 20.06 20.06 45.72 5.69
360 361 1.501741 CACGGTTGTAGCACATGCC 59.498 57.895 0.00 0.00 43.38 4.40
361 362 1.234615 ACCACGGTTGTAGCACATGC 61.235 55.000 0.00 0.00 42.49 4.06
362 363 0.796312 GACCACGGTTGTAGCACATG 59.204 55.000 0.00 0.00 0.00 3.21
363 364 0.685097 AGACCACGGTTGTAGCACAT 59.315 50.000 0.00 0.00 0.00 3.21
364 365 0.249699 CAGACCACGGTTGTAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
365 366 1.566018 GCAGACCACGGTTGTAGCAC 61.566 60.000 0.00 0.00 0.00 4.40
366 367 1.301401 GCAGACCACGGTTGTAGCA 60.301 57.895 0.00 0.00 0.00 3.49
367 368 2.380410 CGCAGACCACGGTTGTAGC 61.380 63.158 0.00 0.83 0.00 3.58
368 369 1.736645 CCGCAGACCACGGTTGTAG 60.737 63.158 0.00 0.00 45.70 2.74
369 370 2.340809 CCGCAGACCACGGTTGTA 59.659 61.111 0.00 0.00 45.70 2.41
375 376 2.177580 ACAACAACCGCAGACCACG 61.178 57.895 0.00 0.00 0.00 4.94
376 377 1.092921 TCACAACAACCGCAGACCAC 61.093 55.000 0.00 0.00 0.00 4.16
377 378 1.092921 GTCACAACAACCGCAGACCA 61.093 55.000 0.00 0.00 0.00 4.02
378 379 1.647084 GTCACAACAACCGCAGACC 59.353 57.895 0.00 0.00 0.00 3.85
379 380 1.092921 TGGTCACAACAACCGCAGAC 61.093 55.000 0.00 0.00 39.81 3.51
380 381 0.813610 CTGGTCACAACAACCGCAGA 60.814 55.000 0.00 0.00 39.81 4.26
381 382 1.648720 CTGGTCACAACAACCGCAG 59.351 57.895 0.00 0.00 39.81 5.18
382 383 2.477176 GCTGGTCACAACAACCGCA 61.477 57.895 0.00 0.00 39.81 5.69
383 384 0.882927 TAGCTGGTCACAACAACCGC 60.883 55.000 0.00 0.00 39.81 5.68
384 385 0.865769 GTAGCTGGTCACAACAACCG 59.134 55.000 0.00 0.00 39.81 4.44
385 386 0.865769 CGTAGCTGGTCACAACAACC 59.134 55.000 0.00 0.00 37.31 3.77
386 387 1.525619 GTCGTAGCTGGTCACAACAAC 59.474 52.381 0.00 0.00 0.00 3.32
387 388 1.137282 TGTCGTAGCTGGTCACAACAA 59.863 47.619 0.00 0.00 0.00 2.83
388 389 0.747852 TGTCGTAGCTGGTCACAACA 59.252 50.000 0.00 0.00 0.00 3.33
389 390 1.137513 GTGTCGTAGCTGGTCACAAC 58.862 55.000 0.00 0.00 0.00 3.32
390 391 0.032952 GGTGTCGTAGCTGGTCACAA 59.967 55.000 15.02 0.00 0.00 3.33
391 392 1.663739 GGTGTCGTAGCTGGTCACA 59.336 57.895 15.02 3.32 0.00 3.58
392 393 1.443872 CGGTGTCGTAGCTGGTCAC 60.444 63.158 0.00 2.42 0.00 3.67
393 394 2.959372 CGGTGTCGTAGCTGGTCA 59.041 61.111 0.00 0.00 0.00 4.02
403 404 2.509336 GCCATCAGGACGGTGTCG 60.509 66.667 0.00 0.00 36.89 4.35
404 405 1.003839 TTGCCATCAGGACGGTGTC 60.004 57.895 0.00 0.00 36.89 3.67
405 406 1.302511 GTTGCCATCAGGACGGTGT 60.303 57.895 0.00 0.00 36.89 4.16
406 407 1.300971 CTGTTGCCATCAGGACGGTG 61.301 60.000 0.00 0.00 36.89 4.94
407 408 1.003355 CTGTTGCCATCAGGACGGT 60.003 57.895 0.00 0.00 36.89 4.83
408 409 1.021390 GTCTGTTGCCATCAGGACGG 61.021 60.000 3.07 0.00 36.89 4.79
409 410 1.354337 CGTCTGTTGCCATCAGGACG 61.354 60.000 3.07 7.78 36.89 4.79
410 411 0.037326 TCGTCTGTTGCCATCAGGAC 60.037 55.000 3.07 0.59 36.89 3.85
411 412 0.037326 GTCGTCTGTTGCCATCAGGA 60.037 55.000 3.07 0.00 36.89 3.86
412 413 0.320683 TGTCGTCTGTTGCCATCAGG 60.321 55.000 3.07 0.00 34.15 3.86
413 414 0.792640 GTGTCGTCTGTTGCCATCAG 59.207 55.000 0.00 0.00 0.00 2.90
414 415 0.602638 GGTGTCGTCTGTTGCCATCA 60.603 55.000 0.00 0.00 0.00 3.07
415 416 1.298859 GGGTGTCGTCTGTTGCCATC 61.299 60.000 0.00 0.00 0.00 3.51
416 417 1.302511 GGGTGTCGTCTGTTGCCAT 60.303 57.895 0.00 0.00 0.00 4.40
417 418 2.110213 GGGTGTCGTCTGTTGCCA 59.890 61.111 0.00 0.00 0.00 4.92
418 419 1.668151 GAGGGTGTCGTCTGTTGCC 60.668 63.158 0.00 0.00 0.00 4.52
419 420 0.320771 ATGAGGGTGTCGTCTGTTGC 60.321 55.000 0.00 0.00 0.00 4.17
420 421 1.714794 GATGAGGGTGTCGTCTGTTG 58.285 55.000 0.00 0.00 38.10 3.33
421 422 0.243907 CGATGAGGGTGTCGTCTGTT 59.756 55.000 0.00 0.00 38.87 3.16
422 423 1.883732 CGATGAGGGTGTCGTCTGT 59.116 57.895 0.00 0.00 38.87 3.41
423 424 4.794164 CGATGAGGGTGTCGTCTG 57.206 61.111 0.00 0.00 38.87 3.51
427 428 2.494918 GGGACGATGAGGGTGTCG 59.505 66.667 0.00 0.00 43.13 4.35
454 455 0.907704 AGCATCCTTGGTACCCACGA 60.908 55.000 10.07 1.65 30.78 4.35
455 456 0.744414 CAGCATCCTTGGTACCCACG 60.744 60.000 10.07 0.00 30.78 4.94
456 457 0.394352 CCAGCATCCTTGGTACCCAC 60.394 60.000 10.07 0.00 30.78 4.61
457 458 1.570857 CCCAGCATCCTTGGTACCCA 61.571 60.000 10.07 0.00 33.73 4.51
462 463 1.528824 CGATCCCAGCATCCTTGGT 59.471 57.895 0.00 0.00 33.73 3.67
463 464 1.228063 CCGATCCCAGCATCCTTGG 60.228 63.158 0.00 0.00 35.41 3.61
465 466 2.512896 GCCGATCCCAGCATCCTT 59.487 61.111 0.00 0.00 0.00 3.36
472 477 1.227764 CTGATGTGGCCGATCCCAG 60.228 63.158 11.16 5.13 35.05 4.45
478 483 0.104855 GTAGCATCTGATGTGGCCGA 59.895 55.000 18.19 0.00 0.00 5.54
486 491 3.339141 TCTAGCGATCGTAGCATCTGAT 58.661 45.455 17.81 0.00 37.01 2.90
487 492 2.739379 CTCTAGCGATCGTAGCATCTGA 59.261 50.000 17.81 4.13 37.01 3.27
500 505 1.403814 CAACATCCCCTCTCTAGCGA 58.596 55.000 0.00 0.00 0.00 4.93
503 508 0.390860 CCGCAACATCCCCTCTCTAG 59.609 60.000 0.00 0.00 0.00 2.43
504 509 0.325296 ACCGCAACATCCCCTCTCTA 60.325 55.000 0.00 0.00 0.00 2.43
505 510 1.613630 ACCGCAACATCCCCTCTCT 60.614 57.895 0.00 0.00 0.00 3.10
534 543 3.614092 AGAACAACTTCATCGCCATCAT 58.386 40.909 0.00 0.00 0.00 2.45
535 544 3.057969 AGAACAACTTCATCGCCATCA 57.942 42.857 0.00 0.00 0.00 3.07
536 545 3.436704 TCAAGAACAACTTCATCGCCATC 59.563 43.478 0.00 0.00 36.61 3.51
544 553 2.807967 CCAGCGATCAAGAACAACTTCA 59.192 45.455 0.00 0.00 36.61 3.02
547 556 2.839486 TCCAGCGATCAAGAACAACT 57.161 45.000 0.00 0.00 0.00 3.16
548 557 2.413371 GCTTCCAGCGATCAAGAACAAC 60.413 50.000 0.00 0.00 0.00 3.32
550 559 1.270785 TGCTTCCAGCGATCAAGAACA 60.271 47.619 0.00 0.00 46.26 3.18
553 562 3.448267 CTGCTTCCAGCGATCAAGA 57.552 52.632 0.00 0.00 46.26 3.02
563 572 2.664851 CCGTTGTCGCTGCTTCCA 60.665 61.111 0.00 0.00 35.54 3.53
586 595 0.247695 GTTGGCTCGTTATCGCTTGC 60.248 55.000 0.00 0.00 36.96 4.01
591 600 0.521867 TCGTCGTTGGCTCGTTATCG 60.522 55.000 0.00 0.00 38.55 2.92
593 602 0.801067 GCTCGTCGTTGGCTCGTTAT 60.801 55.000 0.00 0.00 0.00 1.89
594 603 1.443194 GCTCGTCGTTGGCTCGTTA 60.443 57.895 0.00 0.00 0.00 3.18
600 609 0.179134 ACTAGATGCTCGTCGTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
601 610 2.355132 ACTACTAGATGCTCGTCGTTGG 59.645 50.000 0.00 0.00 0.00 3.77
603 616 3.268330 TCACTACTAGATGCTCGTCGTT 58.732 45.455 0.00 0.00 0.00 3.85
612 625 3.733224 GCAACTCGCATCACTACTAGATG 59.267 47.826 0.00 0.00 44.38 2.90
620 633 2.434884 CCCGCAACTCGCATCACT 60.435 61.111 0.00 0.00 42.60 3.41
631 644 4.690719 CGCAGTACCCACCCGCAA 62.691 66.667 0.00 0.00 0.00 4.85
643 656 1.082038 CGAGACAACGAGACGCAGT 60.082 57.895 0.00 0.00 38.70 4.40
650 663 2.125912 CTGCCCCGAGACAACGAG 60.126 66.667 0.00 0.00 35.09 4.18
651 664 4.373116 GCTGCCCCGAGACAACGA 62.373 66.667 0.00 0.00 35.09 3.85
676 689 1.683790 GCGTTGGTCTTCGACATCGG 61.684 60.000 0.73 0.00 40.29 4.18
680 694 0.596600 GTGAGCGTTGGTCTTCGACA 60.597 55.000 0.00 0.00 33.68 4.35
698 712 4.015406 TCGGCCCGCATCACAAGT 62.015 61.111 0.00 0.00 0.00 3.16
699 713 3.499737 GTCGGCCCGCATCACAAG 61.500 66.667 0.00 0.00 0.00 3.16
703 717 4.585526 GATCGTCGGCCCGCATCA 62.586 66.667 0.00 0.00 0.00 3.07
715 729 3.073946 TGAGAAAAGAAAAGGGGGATCGT 59.926 43.478 0.00 0.00 0.00 3.73
718 732 4.814967 TGTTGAGAAAAGAAAAGGGGGAT 58.185 39.130 0.00 0.00 0.00 3.85
735 749 1.925415 GCATGTGCGCTCCATGTTGA 61.925 55.000 28.73 4.58 41.38 3.18
738 752 1.972752 TTGCATGTGCGCTCCATGT 60.973 52.632 28.73 5.51 45.83 3.21
739 753 1.515519 GTTGCATGTGCGCTCCATG 60.516 57.895 26.23 26.23 45.83 3.66
740 754 1.929806 CTGTTGCATGTGCGCTCCAT 61.930 55.000 9.73 8.23 45.83 3.41
756 770 1.908340 GCATGACTGGGCCTCTCTGT 61.908 60.000 4.53 0.00 0.00 3.41
772 786 0.889186 GTCAACCCCTTCACACGCAT 60.889 55.000 0.00 0.00 0.00 4.73
806 820 2.597455 CCCTTGGATTCGGGCAATTAT 58.403 47.619 0.00 0.00 32.83 1.28
845 861 2.759538 GGTCGACCGTCTAGATTCTG 57.240 55.000 20.85 0.00 0.00 3.02
877 895 5.739161 CCGGATTTTCTTTTTCAGATAAGCG 59.261 40.000 0.00 0.00 31.58 4.68
880 898 6.152154 GGGTCCGGATTTTCTTTTTCAGATAA 59.848 38.462 7.81 0.00 0.00 1.75
881 899 5.650703 GGGTCCGGATTTTCTTTTTCAGATA 59.349 40.000 7.81 0.00 0.00 1.98
975 1008 0.547954 AGAAACAGGGGAGGGGAGAC 60.548 60.000 0.00 0.00 0.00 3.36
976 1009 0.252742 GAGAAACAGGGGAGGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
980 1013 0.252927 AGAGGAGAAACAGGGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
981 1014 0.908198 CAGAGGAGAAACAGGGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
982 1015 0.251634 GCAGAGGAGAAACAGGGGAG 59.748 60.000 0.00 0.00 0.00 4.30
983 1016 1.201429 GGCAGAGGAGAAACAGGGGA 61.201 60.000 0.00 0.00 0.00 4.81
984 1017 1.301293 GGCAGAGGAGAAACAGGGG 59.699 63.158 0.00 0.00 0.00 4.79
985 1018 1.301293 GGGCAGAGGAGAAACAGGG 59.699 63.158 0.00 0.00 0.00 4.45
986 1019 1.078848 CGGGCAGAGGAGAAACAGG 60.079 63.158 0.00 0.00 0.00 4.00
987 1020 0.108424 CTCGGGCAGAGGAGAAACAG 60.108 60.000 6.77 0.00 43.20 3.16
988 1021 1.975327 CTCGGGCAGAGGAGAAACA 59.025 57.895 6.77 0.00 43.20 2.83
989 1022 1.448717 GCTCGGGCAGAGGAGAAAC 60.449 63.158 16.37 0.00 46.91 2.78
990 1023 1.194781 AAGCTCGGGCAGAGGAGAAA 61.195 55.000 11.40 0.00 46.91 2.52
991 1024 1.610673 AAGCTCGGGCAGAGGAGAA 60.611 57.895 11.40 0.00 46.91 2.87
1018 1092 3.081804 GCGAAGGGAAGGAAAGAAATGA 58.918 45.455 0.00 0.00 0.00 2.57
1075 1158 1.901650 GAGCAACTGCAGTGGTACGC 61.902 60.000 22.49 17.31 45.16 4.42
1151 1239 3.462678 GACGGGGAGGAGGAGCAC 61.463 72.222 0.00 0.00 0.00 4.40
1281 1396 1.339438 TGAGAATCAGCTTGTGGCCTC 60.339 52.381 3.32 0.00 42.56 4.70
1283 1398 3.254629 TGAGAATCAGCTTGTGGCC 57.745 52.632 0.00 0.00 42.56 5.36
1347 1502 0.530870 TGGTGTGCGACAATCGTTCA 60.531 50.000 0.00 0.00 42.81 3.18
1392 1548 1.667722 CTTGGTTCCTGCCAAAGCC 59.332 57.895 0.00 0.00 46.59 4.35
1393 1549 1.005748 GCTTGGTTCCTGCCAAAGC 60.006 57.895 0.00 0.00 46.59 3.51
1394 1550 1.043022 AAGCTTGGTTCCTGCCAAAG 58.957 50.000 0.00 0.00 46.59 2.77
1437 1612 2.162608 CCTACGCCTATCTCGATTCAGG 59.837 54.545 2.72 2.72 0.00 3.86
1438 1613 2.814919 ACCTACGCCTATCTCGATTCAG 59.185 50.000 0.00 0.00 0.00 3.02
1442 1617 3.190953 GCTAAACCTACGCCTATCTCGAT 59.809 47.826 0.00 0.00 0.00 3.59
1495 2889 2.281692 AGCAGTGCACGCCATGAA 60.282 55.556 23.57 0.00 0.00 2.57
1547 2948 6.072286 GCAGGTATATCAACAGAAATCCATGG 60.072 42.308 4.97 4.97 0.00 3.66
1553 2954 9.664332 GATATCAGCAGGTATATCAACAGAAAT 57.336 33.333 0.00 0.00 35.85 2.17
1554 2955 8.874156 AGATATCAGCAGGTATATCAACAGAAA 58.126 33.333 5.32 0.00 37.49 2.52
1555 2956 8.309656 CAGATATCAGCAGGTATATCAACAGAA 58.690 37.037 5.32 0.00 37.49 3.02
1556 2957 7.093596 CCAGATATCAGCAGGTATATCAACAGA 60.094 40.741 5.32 0.00 37.49 3.41
1557 2958 7.040494 CCAGATATCAGCAGGTATATCAACAG 58.960 42.308 5.32 0.00 37.49 3.16
1560 2961 7.984859 ATCCAGATATCAGCAGGTATATCAA 57.015 36.000 5.32 0.00 37.49 2.57
1562 2963 8.703743 AGAAATCCAGATATCAGCAGGTATATC 58.296 37.037 5.32 0.00 35.98 1.63
1663 3209 5.555966 TGAACCATACATGACTGCTGTTAA 58.444 37.500 0.00 0.00 0.00 2.01
1671 3218 7.112122 TGCTTATTTCTGAACCATACATGACT 58.888 34.615 0.00 0.00 0.00 3.41
1724 3279 0.608035 CCTTGGCTTGCCCTTAACGA 60.608 55.000 9.35 0.00 0.00 3.85
1873 3462 2.045926 GGGCATGCGAACACCTCT 60.046 61.111 12.44 0.00 0.00 3.69
2004 3615 1.805945 GGGACACGCGTAGAAGCAG 60.806 63.158 13.44 0.00 36.85 4.24
2043 3655 5.273674 TGCATTTTGAACACTTGAATCCA 57.726 34.783 0.00 0.00 0.00 3.41
2107 3719 6.962182 TGTATTCTTTCATTCCTGAGGTGAT 58.038 36.000 0.00 0.00 31.68 3.06
2264 3877 6.666678 AGGCTATGGAATTGAAAGAATGAGA 58.333 36.000 0.00 0.00 0.00 3.27
2269 3885 7.100458 GCTTAAGGCTATGGAATTGAAAGAA 57.900 36.000 4.29 0.00 38.06 2.52
2329 3958 7.544804 AATACATGGCTCTGACAGATATACA 57.455 36.000 5.42 3.56 0.00 2.29
2431 4239 7.040478 CCATTTGGAACTGATAAAGTCAACAGA 60.040 37.037 0.00 0.00 38.56 3.41
2648 6158 4.389077 AGCTCGAAATAAACACGAAGGAAG 59.611 41.667 0.00 0.00 0.00 3.46
2666 6176 4.307432 TCAAGTCTTACAGGAAAAGCTCG 58.693 43.478 0.00 0.00 0.00 5.03
2877 6548 7.899330 TGTACTTTAGAACAAAAAGAACGTTCG 59.101 33.333 21.87 10.30 43.00 3.95
2985 6741 5.163893 GGCATCAATTGAACATGAAGCAAAG 60.164 40.000 13.09 0.00 40.88 2.77
3165 6934 7.824779 GGATTAACTAATTGTTCAGTGGACTCT 59.175 37.037 2.55 0.00 39.89 3.24
3166 6935 7.606456 TGGATTAACTAATTGTTCAGTGGACTC 59.394 37.037 2.55 0.00 39.89 3.36
3186 6957 4.460034 GCCGGGTTTAAACTTTCTGGATTA 59.540 41.667 19.45 0.00 0.00 1.75
3228 7005 9.499585 CAGTCAATAATTAACAGAAATGCAGAG 57.500 33.333 0.00 0.00 0.00 3.35
3233 7010 9.844790 TTCAGCAGTCAATAATTAACAGAAATG 57.155 29.630 0.00 0.00 0.00 2.32
3262 7039 4.521639 ACTATCGTGGTTGACTTACAGACA 59.478 41.667 0.00 0.00 0.00 3.41
3559 7346 7.093068 TGTCCCATGCAGAAAATAAGTAGTAGA 60.093 37.037 0.00 0.00 0.00 2.59
3600 7392 3.334691 GCACATAGCAGACAAGGTACAA 58.665 45.455 0.00 0.00 44.79 2.41
3768 11235 5.940470 ACAAAGAAAGTCTGGATGTGATACC 59.060 40.000 0.00 0.00 0.00 2.73
3837 11310 9.447040 CGTAACAGCTATATATATACATGCGTT 57.553 33.333 16.81 16.81 0.00 4.84
3900 11859 4.754114 TGCATTTTGGTTCAATTGCCTAAC 59.246 37.500 0.00 0.08 34.30 2.34
3931 11890 5.582550 TGCTACTATTGTTCATCAGAGTCG 58.417 41.667 0.00 0.00 0.00 4.18
3958 12090 2.294233 TGCTCAATGCCTGAACTTGAAC 59.706 45.455 0.00 0.00 42.00 3.18
3963 12095 2.961062 ACTTTTGCTCAATGCCTGAACT 59.039 40.909 0.00 0.00 42.00 3.01
4104 12260 9.664332 CTTGATCTTCTCTAGAAAGGAATTGAA 57.336 33.333 12.03 2.18 36.22 2.69
4106 12262 9.316730 CTCTTGATCTTCTCTAGAAAGGAATTG 57.683 37.037 12.03 0.00 35.69 2.32
4183 12339 1.860950 GCTTGCGCTGATATTCTTCGA 59.139 47.619 9.73 0.00 0.00 3.71
4185 12341 3.680642 TTGCTTGCGCTGATATTCTTC 57.319 42.857 9.73 0.00 36.97 2.87
4197 12355 2.787249 CCGGTCTGATTGCTTGCG 59.213 61.111 0.00 0.00 0.00 4.85
4264 12452 2.025155 TGTATGGTGCGGTTTGTTGTT 58.975 42.857 0.00 0.00 0.00 2.83
4275 12463 1.167851 TTCTTGCTGCTGTATGGTGC 58.832 50.000 0.00 0.00 0.00 5.01
4335 12527 2.679639 CGGAATGGCTGCTTGTACCTTA 60.680 50.000 0.00 0.00 0.00 2.69
4514 12844 3.906008 GCTGTAATTTTACACACACTGCG 59.094 43.478 0.00 0.00 38.64 5.18
4582 13043 1.457346 GCTTGCCAGTTCTGCTACAT 58.543 50.000 0.00 0.00 0.00 2.29
4590 13051 1.109323 ACCTGTTGGCTTGCCAGTTC 61.109 55.000 14.33 9.79 36.63 3.01
4618 13080 6.653320 GTGAATGGGAATAACAGTAACACTCA 59.347 38.462 0.00 0.00 0.00 3.41
4648 13135 1.902508 CTTCTGTCTCCTGCCTAACCA 59.097 52.381 0.00 0.00 0.00 3.67
4768 13258 0.179015 TAGCAGTGACCCCGCAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
4769 13259 0.887387 GTAGCAGTGACCCCGCAAAA 60.887 55.000 0.00 0.00 0.00 2.44
4770 13260 1.302192 GTAGCAGTGACCCCGCAAA 60.302 57.895 0.00 0.00 0.00 3.68
4843 13333 2.368875 GGCTAGCAGCTGATTACCCTAA 59.631 50.000 20.43 0.00 41.99 2.69
4844 13334 1.971357 GGCTAGCAGCTGATTACCCTA 59.029 52.381 20.43 7.11 41.99 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.