Multiple sequence alignment - TraesCS7A01G514100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G514100 chr7A 100.000 2441 0 0 1 2441 700452307 700449867 0.000000e+00 4508.0
1 TraesCS7A01G514100 chr7A 82.090 737 59 36 215 915 699741479 699740780 1.640000e-156 562.0
2 TraesCS7A01G514100 chr7A 84.872 390 47 8 946 1330 699766480 699766098 1.370000e-102 383.0
3 TraesCS7A01G514100 chr7A 83.168 101 11 4 226 320 699744462 699744362 1.200000e-13 87.9
4 TraesCS7A01G514100 chr4A 81.357 1459 145 56 311 1693 661973045 661974452 0.000000e+00 1070.0
5 TraesCS7A01G514100 chr4A 87.069 696 89 1 1729 2424 642119181 642119875 0.000000e+00 785.0
6 TraesCS7A01G514100 chr4A 79.406 539 81 21 801 1330 661969350 661969867 1.070000e-93 353.0
7 TraesCS7A01G514100 chr4A 95.455 44 2 0 1615 1658 661977013 661977056 1.210000e-08 71.3
8 TraesCS7A01G514100 chr6B 88.555 699 74 6 1729 2424 15300127 15300822 0.000000e+00 843.0
9 TraesCS7A01G514100 chr6B 86.414 633 85 1 1722 2354 476964890 476964259 0.000000e+00 691.0
10 TraesCS7A01G514100 chr6B 81.765 170 25 4 2231 2397 46978369 46978535 1.180000e-28 137.0
11 TraesCS7A01G514100 chr7B 80.018 1131 137 42 561 1637 698858002 698856907 0.000000e+00 754.0
12 TraesCS7A01G514100 chr7B 81.766 521 58 21 855 1371 693792696 693792209 3.780000e-108 401.0
13 TraesCS7A01G514100 chr7B 84.463 354 47 6 980 1330 693821432 693821084 2.320000e-90 342.0
14 TraesCS7A01G514100 chr7B 78.957 575 68 21 844 1412 694766893 694766366 2.320000e-90 342.0
15 TraesCS7A01G514100 chr7B 79.374 543 63 21 1011 1544 693198046 693197544 1.080000e-88 337.0
16 TraesCS7A01G514100 chr7B 82.493 377 39 14 485 841 693793353 693792984 3.050000e-79 305.0
17 TraesCS7A01G514100 chr7B 82.656 369 27 13 1359 1698 693791974 693791614 2.370000e-75 292.0
18 TraesCS7A01G514100 chr7B 85.099 302 26 12 242 533 698858289 698857997 8.540000e-75 291.0
19 TraesCS7A01G514100 chr7B 86.420 243 22 7 219 454 693198721 693198483 3.110000e-64 255.0
20 TraesCS7A01G514100 chr7B 82.879 257 17 8 646 887 693198381 693198137 3.180000e-49 206.0
21 TraesCS7A01G514100 chr7B 88.050 159 9 6 103 261 696590497 696590349 1.930000e-41 180.0
22 TraesCS7A01G514100 chr7B 92.683 123 8 1 304 425 694767292 694767170 2.490000e-40 176.0
23 TraesCS7A01G514100 chr7B 89.630 135 5 5 146 280 698853979 698853854 1.940000e-36 163.0
24 TraesCS7A01G514100 chr7B 78.176 307 27 21 583 866 696590158 696589869 2.510000e-35 159.0
25 TraesCS7A01G514100 chr7B 79.435 248 22 13 234 456 696363715 696363472 5.440000e-32 148.0
26 TraesCS7A01G514100 chr7B 85.714 91 9 3 197 283 696613272 696613182 2.580000e-15 93.5
27 TraesCS7A01G514100 chr7B 97.143 35 1 0 1569 1603 694764968 694764934 2.620000e-05 60.2
28 TraesCS7A01G514100 chrUn 79.581 1146 132 53 583 1698 77545435 77544362 0.000000e+00 726.0
29 TraesCS7A01G514100 chrUn 85.799 338 40 4 990 1323 83371090 83370757 3.860000e-93 351.0
30 TraesCS7A01G514100 chr7D 80.610 1016 98 44 689 1639 610240266 610241247 0.000000e+00 693.0
31 TraesCS7A01G514100 chr7D 80.437 869 80 33 583 1425 607547015 607546211 4.520000e-162 580.0
32 TraesCS7A01G514100 chr7D 85.825 388 47 3 946 1330 608488135 608487753 2.920000e-109 405.0
33 TraesCS7A01G514100 chr7D 85.876 354 33 8 989 1330 607562198 607561850 6.420000e-96 361.0
34 TraesCS7A01G514100 chr7D 77.740 593 56 39 751 1330 608450671 608450142 6.600000e-76 294.0
35 TraesCS7A01G514100 chr7D 90.610 213 13 5 245 456 607547271 607547065 2.390000e-70 276.0
36 TraesCS7A01G514100 chr7D 89.671 213 12 6 245 456 610239947 610240150 1.860000e-66 263.0
37 TraesCS7A01G514100 chr7D 84.615 156 10 9 304 456 608451011 608450867 2.530000e-30 143.0
38 TraesCS7A01G514100 chr7D 85.366 123 15 1 697 816 608488367 608488245 9.160000e-25 124.0
39 TraesCS7A01G514100 chr7D 85.849 106 6 3 175 279 608451105 608451008 1.190000e-18 104.0
40 TraesCS7A01G514100 chr7D 82.353 119 16 4 1575 1693 608449911 608449798 5.550000e-17 99.0
41 TraesCS7A01G514100 chr5D 84.218 697 94 10 1729 2424 79174287 79173606 0.000000e+00 664.0
42 TraesCS7A01G514100 chr3B 81.714 700 122 6 1724 2420 689296933 689296237 1.630000e-161 579.0
43 TraesCS7A01G514100 chr2A 80.057 697 129 9 1729 2420 398590206 398590897 2.170000e-140 508.0
44 TraesCS7A01G514100 chr2A 79.340 697 134 9 1729 2420 398740780 398740089 4.720000e-132 481.0
45 TraesCS7A01G514100 chr1B 78.830 359 63 6 2066 2424 218174978 218175323 1.890000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G514100 chr7A 700449867 700452307 2440 True 4508.000000 4508 100.000000 1 2441 1 chr7A.!!$R2 2440
1 TraesCS7A01G514100 chr7A 699740780 699744462 3682 True 324.950000 562 82.629000 215 915 2 chr7A.!!$R3 700
2 TraesCS7A01G514100 chr4A 642119181 642119875 694 False 785.000000 785 87.069000 1729 2424 1 chr4A.!!$F1 695
3 TraesCS7A01G514100 chr4A 661969350 661977056 7706 False 498.100000 1070 85.406000 311 1693 3 chr4A.!!$F2 1382
4 TraesCS7A01G514100 chr6B 15300127 15300822 695 False 843.000000 843 88.555000 1729 2424 1 chr6B.!!$F1 695
5 TraesCS7A01G514100 chr6B 476964259 476964890 631 True 691.000000 691 86.414000 1722 2354 1 chr6B.!!$R1 632
6 TraesCS7A01G514100 chr7B 698853854 698858289 4435 True 402.666667 754 84.915667 146 1637 3 chr7B.!!$R8 1491
7 TraesCS7A01G514100 chr7B 693791614 693793353 1739 True 332.666667 401 82.305000 485 1698 3 chr7B.!!$R5 1213
8 TraesCS7A01G514100 chr7B 693197544 693198721 1177 True 266.000000 337 82.891000 219 1544 3 chr7B.!!$R4 1325
9 TraesCS7A01G514100 chrUn 77544362 77545435 1073 True 726.000000 726 79.581000 583 1698 1 chrUn.!!$R1 1115
10 TraesCS7A01G514100 chr7D 610239947 610241247 1300 False 478.000000 693 85.140500 245 1639 2 chr7D.!!$F1 1394
11 TraesCS7A01G514100 chr7D 607546211 607547271 1060 True 428.000000 580 85.523500 245 1425 2 chr7D.!!$R2 1180
12 TraesCS7A01G514100 chr7D 608487753 608488367 614 True 264.500000 405 85.595500 697 1330 2 chr7D.!!$R4 633
13 TraesCS7A01G514100 chr5D 79173606 79174287 681 True 664.000000 664 84.218000 1729 2424 1 chr5D.!!$R1 695
14 TraesCS7A01G514100 chr3B 689296237 689296933 696 True 579.000000 579 81.714000 1724 2420 1 chr3B.!!$R1 696
15 TraesCS7A01G514100 chr2A 398590206 398590897 691 False 508.000000 508 80.057000 1729 2420 1 chr2A.!!$F1 691
16 TraesCS7A01G514100 chr2A 398740089 398740780 691 True 481.000000 481 79.340000 1729 2420 1 chr2A.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 5150 0.037447 GCCTTCCTTCTCCAACAGCT 59.963 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 9068 0.034767 AAAACCCTAACCCTAGCGCC 60.035 55.0 2.29 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.519610 GGTGCCACATGAAAGGGT 57.480 55.556 0.00 0.00 0.00 4.34
19 20 0.539438 GGTGCCACATGAAAGGGTCA 60.539 55.000 0.00 0.00 41.67 4.02
20 21 0.883833 GTGCCACATGAAAGGGTCAG 59.116 55.000 0.00 0.00 40.43 3.51
22 23 0.895100 GCCACATGAAAGGGTCAGCA 60.895 55.000 0.00 0.00 40.43 4.41
23 24 1.171308 CCACATGAAAGGGTCAGCAG 58.829 55.000 0.00 0.00 40.43 4.24
24 25 1.271543 CCACATGAAAGGGTCAGCAGA 60.272 52.381 0.00 0.00 40.43 4.26
25 26 2.507484 CACATGAAAGGGTCAGCAGAA 58.493 47.619 0.00 0.00 40.43 3.02
26 27 3.087031 CACATGAAAGGGTCAGCAGAAT 58.913 45.455 0.00 0.00 40.43 2.40
27 28 3.087031 ACATGAAAGGGTCAGCAGAATG 58.913 45.455 0.00 0.00 40.43 2.67
28 29 3.245016 ACATGAAAGGGTCAGCAGAATGA 60.245 43.478 0.00 0.00 40.43 2.57
30 31 4.038271 TGAAAGGGTCAGCAGAATGATT 57.962 40.909 0.00 0.00 39.69 2.57
32 33 4.834496 TGAAAGGGTCAGCAGAATGATTTT 59.166 37.500 0.00 0.00 39.69 1.82
33 34 5.305128 TGAAAGGGTCAGCAGAATGATTTTT 59.695 36.000 0.00 0.00 39.69 1.94
54 55 7.826260 TTTTTCTTAAAAGCAGGTCAGTTTG 57.174 32.000 0.00 0.00 0.00 2.93
56 57 5.499139 TCTTAAAAGCAGGTCAGTTTGTG 57.501 39.130 0.00 0.00 0.00 3.33
57 58 5.189928 TCTTAAAAGCAGGTCAGTTTGTGA 58.810 37.500 0.00 0.00 0.00 3.58
60 61 5.343307 AAAAGCAGGTCAGTTTGTGATTT 57.657 34.783 0.00 0.00 37.56 2.17
62 63 3.554934 AGCAGGTCAGTTTGTGATTTGA 58.445 40.909 0.00 0.00 37.56 2.69
63 64 4.147321 AGCAGGTCAGTTTGTGATTTGAT 58.853 39.130 0.00 0.00 37.56 2.57
65 66 4.217118 GCAGGTCAGTTTGTGATTTGATCT 59.783 41.667 0.00 0.00 37.56 2.75
66 67 5.618640 GCAGGTCAGTTTGTGATTTGATCTC 60.619 44.000 0.00 0.00 37.56 2.75
67 68 4.692625 AGGTCAGTTTGTGATTTGATCTCG 59.307 41.667 0.00 0.00 37.56 4.04
69 70 3.436704 TCAGTTTGTGATTTGATCTCGCC 59.563 43.478 0.00 0.00 0.00 5.54
70 71 2.749621 AGTTTGTGATTTGATCTCGCCC 59.250 45.455 0.00 0.00 0.00 6.13
71 72 2.749621 GTTTGTGATTTGATCTCGCCCT 59.250 45.455 0.00 0.00 0.00 5.19
73 74 1.212616 GTGATTTGATCTCGCCCTCG 58.787 55.000 0.00 0.00 0.00 4.63
74 75 0.104855 TGATTTGATCTCGCCCTCGG 59.895 55.000 0.00 0.00 36.13 4.63
76 77 1.338136 ATTTGATCTCGCCCTCGGGT 61.338 55.000 3.54 0.00 37.48 5.28
78 79 2.833582 GATCTCGCCCTCGGGTCA 60.834 66.667 3.54 0.00 37.48 4.02
79 80 2.363795 ATCTCGCCCTCGGGTCAA 60.364 61.111 3.54 0.00 37.48 3.18
80 81 1.956629 GATCTCGCCCTCGGGTCAAA 61.957 60.000 3.54 0.00 37.48 2.69
81 82 1.338136 ATCTCGCCCTCGGGTCAAAT 61.338 55.000 3.54 0.00 37.48 2.32
82 83 0.685131 TCTCGCCCTCGGGTCAAATA 60.685 55.000 3.54 0.00 37.48 1.40
83 84 0.529992 CTCGCCCTCGGGTCAAATAC 60.530 60.000 3.54 0.00 37.65 1.89
84 85 1.881252 CGCCCTCGGGTCAAATACG 60.881 63.158 3.54 0.00 37.65 3.06
85 86 1.219935 GCCCTCGGGTCAAATACGT 59.780 57.895 3.54 0.00 37.65 3.57
86 87 1.087771 GCCCTCGGGTCAAATACGTG 61.088 60.000 0.00 0.00 37.65 4.49
87 88 0.533491 CCCTCGGGTCAAATACGTGA 59.467 55.000 0.00 0.00 0.00 4.35
88 89 1.138266 CCCTCGGGTCAAATACGTGAT 59.862 52.381 0.00 0.00 0.00 3.06
89 90 2.419574 CCCTCGGGTCAAATACGTGATT 60.420 50.000 0.00 0.00 0.00 2.57
90 91 3.267483 CCTCGGGTCAAATACGTGATTT 58.733 45.455 0.00 0.00 38.34 2.17
91 92 3.308866 CCTCGGGTCAAATACGTGATTTC 59.691 47.826 0.00 0.00 35.45 2.17
92 93 4.181578 CTCGGGTCAAATACGTGATTTCT 58.818 43.478 0.00 0.00 35.45 2.52
93 94 3.930229 TCGGGTCAAATACGTGATTTCTG 59.070 43.478 0.00 0.00 35.45 3.02
94 95 3.485216 CGGGTCAAATACGTGATTTCTGC 60.485 47.826 0.00 0.00 35.45 4.26
95 96 3.181500 GGGTCAAATACGTGATTTCTGCC 60.181 47.826 0.00 3.06 35.45 4.85
96 97 3.689649 GGTCAAATACGTGATTTCTGCCT 59.310 43.478 0.00 0.00 35.45 4.75
97 98 4.201822 GGTCAAATACGTGATTTCTGCCTC 60.202 45.833 0.00 0.00 35.45 4.70
98 99 4.631813 GTCAAATACGTGATTTCTGCCTCT 59.368 41.667 0.00 0.00 35.45 3.69
99 100 4.631377 TCAAATACGTGATTTCTGCCTCTG 59.369 41.667 0.00 0.00 35.45 3.35
100 101 2.010145 TACGTGATTTCTGCCTCTGC 57.990 50.000 0.00 0.00 38.26 4.26
101 102 5.102626 AAATACGTGATTTCTGCCTCTGCA 61.103 41.667 0.00 0.00 38.04 4.41
102 103 6.547322 AAATACGTGATTTCTGCCTCTGCAA 61.547 40.000 0.00 0.00 37.64 4.08
103 104 8.271157 AAATACGTGATTTCTGCCTCTGCAAG 62.271 42.308 0.00 0.00 37.64 4.01
111 112 4.779475 CCTCTGCAAGGTGAACGT 57.221 55.556 6.74 0.00 40.67 3.99
112 113 3.006672 CCTCTGCAAGGTGAACGTT 57.993 52.632 0.00 0.00 40.67 3.99
113 114 1.308998 CCTCTGCAAGGTGAACGTTT 58.691 50.000 0.46 0.00 40.67 3.60
114 115 1.676006 CCTCTGCAAGGTGAACGTTTT 59.324 47.619 0.46 0.00 40.67 2.43
115 116 2.099098 CCTCTGCAAGGTGAACGTTTTT 59.901 45.455 0.46 0.00 40.67 1.94
116 117 3.108144 CTCTGCAAGGTGAACGTTTTTG 58.892 45.455 0.46 6.81 0.00 2.44
117 118 2.750166 TCTGCAAGGTGAACGTTTTTGA 59.250 40.909 0.46 0.00 0.00 2.69
118 119 2.851824 CTGCAAGGTGAACGTTTTTGAC 59.148 45.455 0.46 0.00 0.00 3.18
119 120 2.190161 GCAAGGTGAACGTTTTTGACC 58.810 47.619 0.46 6.92 0.00 4.02
120 121 2.446282 CAAGGTGAACGTTTTTGACCG 58.554 47.619 0.46 0.00 0.00 4.79
121 122 2.027003 AGGTGAACGTTTTTGACCGA 57.973 45.000 0.46 0.00 0.00 4.69
122 123 1.937899 AGGTGAACGTTTTTGACCGAG 59.062 47.619 0.46 0.00 0.00 4.63
123 124 1.596220 GGTGAACGTTTTTGACCGAGC 60.596 52.381 0.46 0.00 0.00 5.03
124 125 0.302288 TGAACGTTTTTGACCGAGCG 59.698 50.000 0.46 0.00 0.00 5.03
125 126 0.990295 GAACGTTTTTGACCGAGCGC 60.990 55.000 0.46 0.00 0.00 5.92
126 127 2.496794 CGTTTTTGACCGAGCGCG 60.497 61.111 0.00 0.00 37.24 6.86
127 128 2.932905 GTTTTTGACCGAGCGCGA 59.067 55.556 12.10 0.00 40.82 5.87
128 129 1.277440 GTTTTTGACCGAGCGCGAA 59.723 52.632 12.10 0.00 40.82 4.70
129 130 0.721483 GTTTTTGACCGAGCGCGAAG 60.721 55.000 12.10 0.00 40.82 3.79
176 177 3.508474 GCCATCGCGGGAATGAAA 58.492 55.556 6.13 0.00 34.06 2.69
177 178 1.356624 GCCATCGCGGGAATGAAAG 59.643 57.895 6.13 0.00 34.06 2.62
178 179 2.024918 CCATCGCGGGAATGAAAGG 58.975 57.895 6.13 0.00 0.00 3.11
179 180 1.356624 CATCGCGGGAATGAAAGGC 59.643 57.895 6.13 0.00 0.00 4.35
180 181 1.077787 ATCGCGGGAATGAAAGGCA 60.078 52.632 6.13 0.00 0.00 4.75
181 182 1.097547 ATCGCGGGAATGAAAGGCAG 61.098 55.000 6.13 0.00 0.00 4.85
182 183 1.745115 CGCGGGAATGAAAGGCAGA 60.745 57.895 0.00 0.00 0.00 4.26
183 184 1.803289 GCGGGAATGAAAGGCAGAC 59.197 57.895 0.00 0.00 0.00 3.51
184 185 1.982073 GCGGGAATGAAAGGCAGACG 61.982 60.000 0.00 0.00 0.00 4.18
185 186 0.673644 CGGGAATGAAAGGCAGACGT 60.674 55.000 0.00 0.00 0.00 4.34
186 187 0.804989 GGGAATGAAAGGCAGACGTG 59.195 55.000 0.00 0.00 0.00 4.49
187 188 0.804989 GGAATGAAAGGCAGACGTGG 59.195 55.000 0.00 0.00 0.00 4.94
188 189 1.610624 GGAATGAAAGGCAGACGTGGA 60.611 52.381 0.00 0.00 0.00 4.02
189 190 2.359900 GAATGAAAGGCAGACGTGGAT 58.640 47.619 0.00 0.00 0.00 3.41
190 191 2.496899 ATGAAAGGCAGACGTGGATT 57.503 45.000 0.00 0.00 0.00 3.01
191 192 1.522668 TGAAAGGCAGACGTGGATTG 58.477 50.000 0.00 0.00 0.00 2.67
192 193 1.071542 TGAAAGGCAGACGTGGATTGA 59.928 47.619 0.00 0.00 0.00 2.57
193 194 2.290260 TGAAAGGCAGACGTGGATTGAT 60.290 45.455 0.00 0.00 0.00 2.57
194 195 2.496899 AAGGCAGACGTGGATTGATT 57.503 45.000 0.00 0.00 0.00 2.57
195 196 2.029838 AGGCAGACGTGGATTGATTC 57.970 50.000 0.00 0.00 0.00 2.52
196 197 1.556911 AGGCAGACGTGGATTGATTCT 59.443 47.619 0.00 0.00 0.00 2.40
197 198 1.936547 GGCAGACGTGGATTGATTCTC 59.063 52.381 0.00 0.00 0.00 2.87
198 199 1.590238 GCAGACGTGGATTGATTCTCG 59.410 52.381 0.00 0.00 0.00 4.04
199 200 1.590238 CAGACGTGGATTGATTCTCGC 59.410 52.381 0.00 0.00 0.00 5.03
200 201 1.204704 AGACGTGGATTGATTCTCGCA 59.795 47.619 0.00 0.00 0.00 5.10
201 202 2.159043 AGACGTGGATTGATTCTCGCAT 60.159 45.455 0.00 0.00 0.00 4.73
202 203 2.205074 ACGTGGATTGATTCTCGCATC 58.795 47.619 0.00 0.00 0.00 3.91
203 204 1.190984 CGTGGATTGATTCTCGCATCG 59.809 52.381 0.00 0.00 0.00 3.84
204 205 2.473816 GTGGATTGATTCTCGCATCGA 58.526 47.619 0.00 0.00 0.00 3.59
205 206 3.062763 GTGGATTGATTCTCGCATCGAT 58.937 45.455 0.00 0.00 34.61 3.59
206 207 3.122613 GTGGATTGATTCTCGCATCGATC 59.877 47.826 0.00 9.33 41.05 3.69
207 208 3.987807 GATTGATTCTCGCATCGATCC 57.012 47.619 0.00 0.00 37.83 3.36
208 209 3.583806 GATTGATTCTCGCATCGATCCT 58.416 45.455 0.00 0.00 37.83 3.24
209 210 2.428888 TGATTCTCGCATCGATCCTG 57.571 50.000 0.00 0.00 34.61 3.86
210 211 1.683385 TGATTCTCGCATCGATCCTGT 59.317 47.619 0.00 0.00 34.61 4.00
211 212 2.287849 TGATTCTCGCATCGATCCTGTC 60.288 50.000 0.00 0.00 34.61 3.51
212 213 0.385751 TTCTCGCATCGATCCTGTCC 59.614 55.000 0.00 0.00 34.61 4.02
213 214 1.371022 CTCGCATCGATCCTGTCCG 60.371 63.158 0.00 0.00 34.61 4.79
214 215 2.064723 CTCGCATCGATCCTGTCCGT 62.065 60.000 0.00 0.00 34.61 4.69
215 216 1.658717 CGCATCGATCCTGTCCGTC 60.659 63.158 0.00 0.00 0.00 4.79
216 217 1.300233 GCATCGATCCTGTCCGTCC 60.300 63.158 0.00 0.00 0.00 4.79
217 218 1.008424 CATCGATCCTGTCCGTCCG 60.008 63.158 0.00 0.00 0.00 4.79
223 224 4.415332 CCTGTCCGTCCGTCCGTG 62.415 72.222 0.00 0.00 0.00 4.94
224 225 3.667282 CTGTCCGTCCGTCCGTGT 61.667 66.667 0.00 0.00 0.00 4.49
229 230 2.428569 CGTCCGTCCGTGTGTCAG 60.429 66.667 0.00 0.00 0.00 3.51
283 285 1.697432 CGGGAGGTTTGGCATCCTATA 59.303 52.381 10.93 0.00 46.60 1.31
284 286 2.305927 CGGGAGGTTTGGCATCCTATAT 59.694 50.000 10.93 0.00 46.60 0.86
285 287 3.244911 CGGGAGGTTTGGCATCCTATATT 60.245 47.826 10.93 0.00 46.60 1.28
286 288 4.336280 GGGAGGTTTGGCATCCTATATTC 58.664 47.826 10.93 0.84 46.60 1.75
292 299 2.521126 TGGCATCCTATATTCGGTCGA 58.479 47.619 0.00 0.00 0.00 4.20
294 301 2.516923 GCATCCTATATTCGGTCGACG 58.483 52.381 9.92 5.26 46.11 5.12
302 309 2.074547 ATTCGGTCGACGTTCACATT 57.925 45.000 9.92 0.00 44.69 2.71
310 317 3.303495 GTCGACGTTCACATTCATCGATT 59.697 43.478 0.00 0.00 40.34 3.34
320 327 0.804544 TTCATCGATTCGGCCGTGTC 60.805 55.000 27.15 21.85 0.00 3.67
321 328 1.518352 CATCGATTCGGCCGTGTCA 60.518 57.895 27.15 14.31 0.00 3.58
322 329 1.081556 CATCGATTCGGCCGTGTCAA 61.082 55.000 27.15 12.79 0.00 3.18
324 331 1.081556 TCGATTCGGCCGTGTCAATG 61.082 55.000 27.15 11.70 0.00 2.82
384 4203 3.181482 CGTAGTACGTGACTAGAGGAGGA 60.181 52.174 14.62 0.00 41.47 3.71
438 4295 6.824305 TGATCTCCAATTCCAAAAGAGAAC 57.176 37.500 0.00 0.00 37.16 3.01
443 4300 7.491682 TCTCCAATTCCAAAAGAGAACAAAAG 58.508 34.615 0.00 0.00 30.88 2.27
444 4301 7.124147 TCTCCAATTCCAAAAGAGAACAAAAGT 59.876 33.333 0.00 0.00 30.88 2.66
445 4302 7.041107 TCCAATTCCAAAAGAGAACAAAAGTG 58.959 34.615 0.00 0.00 0.00 3.16
446 4303 6.238184 CCAATTCCAAAAGAGAACAAAAGTGC 60.238 38.462 0.00 0.00 0.00 4.40
447 4304 4.385358 TCCAAAAGAGAACAAAAGTGCC 57.615 40.909 0.00 0.00 0.00 5.01
448 4305 3.766591 TCCAAAAGAGAACAAAAGTGCCA 59.233 39.130 0.00 0.00 0.00 4.92
449 4306 4.221703 TCCAAAAGAGAACAAAAGTGCCAA 59.778 37.500 0.00 0.00 0.00 4.52
450 4307 4.329801 CCAAAAGAGAACAAAAGTGCCAAC 59.670 41.667 0.00 0.00 0.00 3.77
451 4308 5.170748 CAAAAGAGAACAAAAGTGCCAACT 58.829 37.500 0.00 0.00 38.71 3.16
452 4309 4.376340 AAGAGAACAAAAGTGCCAACTG 57.624 40.909 0.00 0.00 36.51 3.16
453 4310 3.356290 AGAGAACAAAAGTGCCAACTGT 58.644 40.909 0.00 0.00 36.51 3.55
454 4311 3.763897 AGAGAACAAAAGTGCCAACTGTT 59.236 39.130 0.00 0.00 36.51 3.16
455 4312 4.220602 AGAGAACAAAAGTGCCAACTGTTT 59.779 37.500 0.00 0.00 36.51 2.83
456 4313 4.494484 AGAACAAAAGTGCCAACTGTTTC 58.506 39.130 0.00 0.00 36.51 2.78
457 4314 4.220602 AGAACAAAAGTGCCAACTGTTTCT 59.779 37.500 0.00 0.00 36.51 2.52
458 4315 4.535526 ACAAAAGTGCCAACTGTTTCTT 57.464 36.364 0.00 0.00 36.51 2.52
459 4316 4.494484 ACAAAAGTGCCAACTGTTTCTTC 58.506 39.130 0.00 0.00 36.51 2.87
460 4317 4.220602 ACAAAAGTGCCAACTGTTTCTTCT 59.779 37.500 0.00 0.00 36.51 2.85
461 4318 5.170748 CAAAAGTGCCAACTGTTTCTTCTT 58.829 37.500 0.00 0.00 36.51 2.52
462 4319 5.405935 AAAGTGCCAACTGTTTCTTCTTT 57.594 34.783 0.00 0.00 36.51 2.52
463 4320 4.376340 AGTGCCAACTGTTTCTTCTTTG 57.624 40.909 0.00 0.00 34.48 2.77
464 4321 4.016444 AGTGCCAACTGTTTCTTCTTTGA 58.984 39.130 0.00 0.00 34.48 2.69
465 4322 4.096984 AGTGCCAACTGTTTCTTCTTTGAG 59.903 41.667 0.00 0.00 34.48 3.02
466 4323 3.381272 TGCCAACTGTTTCTTCTTTGAGG 59.619 43.478 0.00 0.00 0.00 3.86
467 4324 3.243535 GCCAACTGTTTCTTCTTTGAGGG 60.244 47.826 0.00 0.00 0.00 4.30
468 4325 3.319122 CCAACTGTTTCTTCTTTGAGGGG 59.681 47.826 0.00 0.00 0.00 4.79
469 4326 4.207165 CAACTGTTTCTTCTTTGAGGGGA 58.793 43.478 0.00 0.00 0.00 4.81
470 4327 4.519906 ACTGTTTCTTCTTTGAGGGGAA 57.480 40.909 0.00 0.00 0.00 3.97
471 4328 4.867086 ACTGTTTCTTCTTTGAGGGGAAA 58.133 39.130 0.00 0.00 0.00 3.13
472 4329 5.269189 ACTGTTTCTTCTTTGAGGGGAAAA 58.731 37.500 0.00 0.00 0.00 2.29
473 4330 5.719563 ACTGTTTCTTCTTTGAGGGGAAAAA 59.280 36.000 0.00 0.00 0.00 1.94
503 4360 2.423538 ACCAGCTGTTTGACACTTGAAC 59.576 45.455 13.81 0.00 0.00 3.18
548 4416 6.536941 GGTAAACAAAAAGACAATCAAAGCCA 59.463 34.615 0.00 0.00 0.00 4.75
605 4483 3.056107 CAGCTAAGCTACCACTGTTACCA 60.056 47.826 0.00 0.00 36.40 3.25
606 4484 3.195825 AGCTAAGCTACCACTGTTACCAG 59.804 47.826 0.00 0.00 40.10 4.00
608 4486 7.073097 AGCTAAGCTACCACTGTTACCAGTC 62.073 48.000 0.00 0.00 43.32 3.51
667 4574 1.444119 GCTTGCACAAAGACCGACCA 61.444 55.000 0.00 0.00 38.24 4.02
683 4590 2.194056 CATTGCCATCGCCCTCCT 59.806 61.111 0.00 0.00 0.00 3.69
684 4591 1.895707 CATTGCCATCGCCCTCCTC 60.896 63.158 0.00 0.00 0.00 3.71
832 4780 2.797278 CCGGCGCCTGTCCTTATCT 61.797 63.158 26.68 0.00 0.00 1.98
887 5109 1.553690 CCTCCGCCTTCCTTCTCCAA 61.554 60.000 0.00 0.00 0.00 3.53
892 5150 0.037447 GCCTTCCTTCTCCAACAGCT 59.963 55.000 0.00 0.00 0.00 4.24
898 5156 1.544093 CCTTCTCCAACAGCTGAGCAA 60.544 52.381 23.35 1.96 0.00 3.91
923 5184 2.362397 GTCACACACTCCAGAACTCTGA 59.638 50.000 8.33 0.00 46.59 3.27
924 5185 2.625314 TCACACACTCCAGAACTCTGAG 59.375 50.000 8.33 2.45 46.59 3.35
925 5186 2.363680 CACACACTCCAGAACTCTGAGT 59.636 50.000 4.06 4.06 46.59 3.41
926 5187 2.625790 ACACACTCCAGAACTCTGAGTC 59.374 50.000 11.31 5.09 46.59 3.36
927 5188 2.890311 CACACTCCAGAACTCTGAGTCT 59.110 50.000 11.31 7.30 46.59 3.24
928 5189 3.057596 CACACTCCAGAACTCTGAGTCTC 60.058 52.174 11.31 10.62 46.59 3.36
929 5190 3.181434 ACACTCCAGAACTCTGAGTCTCT 60.181 47.826 11.31 12.56 46.59 3.10
930 5191 3.191162 CACTCCAGAACTCTGAGTCTCTG 59.809 52.174 26.06 26.06 46.59 3.35
931 5192 3.073798 ACTCCAGAACTCTGAGTCTCTGA 59.926 47.826 30.21 21.60 46.59 3.27
932 5193 3.417101 TCCAGAACTCTGAGTCTCTGAC 58.583 50.000 30.21 14.28 46.59 3.51
942 5203 0.389391 AGTCTCTGACACAACCCACG 59.611 55.000 0.46 0.00 34.60 4.94
964 5229 4.211920 GTCCATCTCTAGCTTCTACCAGT 58.788 47.826 0.00 0.00 0.00 4.00
975 5249 3.466836 CTTCTACCAGTTGAAGCACACA 58.533 45.455 8.65 0.00 36.13 3.72
976 5250 2.833794 TCTACCAGTTGAAGCACACAC 58.166 47.619 0.00 0.00 0.00 3.82
1116 5393 1.677552 GGGCAACGAGGGAGAAAGA 59.322 57.895 0.00 0.00 37.60 2.52
1188 5468 1.445582 GTTCAGGTACGACCCGCTG 60.446 63.158 0.00 0.00 39.75 5.18
1216 5496 1.371267 CTCAACTTCGACGACGGCA 60.371 57.895 7.55 0.00 40.21 5.69
1236 5522 3.695606 AGCGGTGACAGCGATGGT 61.696 61.111 29.64 8.37 42.41 3.55
1281 5567 1.529865 CGGAACCGAAACTTCAACTCC 59.470 52.381 7.53 0.00 42.83 3.85
1338 5627 4.916293 GCCATCGCCATCGCCTCA 62.916 66.667 0.00 0.00 35.26 3.86
1339 5628 2.203056 CCATCGCCATCGCCTCAA 60.203 61.111 0.00 0.00 35.26 3.02
1340 5629 2.249535 CCATCGCCATCGCCTCAAG 61.250 63.158 0.00 0.00 35.26 3.02
1341 5630 1.227350 CATCGCCATCGCCTCAAGA 60.227 57.895 0.00 0.00 35.26 3.02
1382 5956 6.503589 TTCTGTAGCTTTAGTCTCTCTGAC 57.496 41.667 0.00 0.00 45.67 3.51
1425 6004 8.778358 GTGAGATTGAATCAACTCTGTAAAAGT 58.222 33.333 18.85 0.00 0.00 2.66
1426 6005 8.777413 TGAGATTGAATCAACTCTGTAAAAGTG 58.223 33.333 18.85 0.00 0.00 3.16
1427 6006 8.908786 AGATTGAATCAACTCTGTAAAAGTGA 57.091 30.769 8.03 0.00 0.00 3.41
1455 6051 1.667724 TCGTAGCGAGGTAGTAGCAAC 59.332 52.381 1.58 0.00 0.00 4.17
1461 6057 1.646189 GAGGTAGTAGCAACAGCAGC 58.354 55.000 1.58 0.00 0.00 5.25
1463 6059 0.108804 GGTAGTAGCAACAGCAGCGA 60.109 55.000 0.00 0.00 37.01 4.93
1480 6076 2.011548 GCGAACCAGTACCATGATGCA 61.012 52.381 0.00 0.00 0.00 3.96
1545 6164 2.160417 GGTTCTCAATGCAAGACGAAGG 59.840 50.000 0.00 0.00 0.00 3.46
1573 6192 1.280710 TGATCGGGAAAAGGCTTGCTA 59.719 47.619 0.00 0.00 0.00 3.49
1615 6238 7.120716 ACTGTGAAGGAAGTTTACCCTTTAAA 58.879 34.615 0.00 0.00 42.43 1.52
1669 8940 1.001406 GCCATCCTATTCCTCCGTCTG 59.999 57.143 0.00 0.00 0.00 3.51
1675 8953 0.975556 TATTCCTCCGTCTGCCTGCA 60.976 55.000 0.00 0.00 0.00 4.41
1686 8966 0.673333 CTGCCTGCACGTATCCAACA 60.673 55.000 0.00 0.00 0.00 3.33
1698 8978 2.122783 ATCCAACAATGTACGTGGGG 57.877 50.000 0.00 0.00 0.00 4.96
1699 8979 1.057471 TCCAACAATGTACGTGGGGA 58.943 50.000 0.00 1.90 0.00 4.81
1700 8980 1.631388 TCCAACAATGTACGTGGGGAT 59.369 47.619 0.00 0.00 0.00 3.85
1704 8984 3.985019 ACAATGTACGTGGGGATTACA 57.015 42.857 0.00 0.00 0.00 2.41
1705 8985 3.869065 ACAATGTACGTGGGGATTACAG 58.131 45.455 0.00 0.00 0.00 2.74
1706 8986 3.262405 ACAATGTACGTGGGGATTACAGT 59.738 43.478 0.00 0.00 0.00 3.55
1707 8987 4.467082 ACAATGTACGTGGGGATTACAGTA 59.533 41.667 0.00 0.00 0.00 2.74
1708 8988 4.660789 ATGTACGTGGGGATTACAGTAC 57.339 45.455 0.00 0.00 36.11 2.73
1709 8989 3.700538 TGTACGTGGGGATTACAGTACT 58.299 45.455 0.00 0.00 36.41 2.73
1710 8990 3.444742 TGTACGTGGGGATTACAGTACTG 59.555 47.826 21.44 21.44 36.41 2.74
1711 8991 1.206371 ACGTGGGGATTACAGTACTGC 59.794 52.381 22.90 6.23 0.00 4.40
1712 8992 1.480954 CGTGGGGATTACAGTACTGCT 59.519 52.381 22.90 12.27 0.00 4.24
1713 8993 2.691526 CGTGGGGATTACAGTACTGCTA 59.308 50.000 22.90 11.19 0.00 3.49
1714 8994 3.243434 CGTGGGGATTACAGTACTGCTAG 60.243 52.174 22.90 0.00 0.00 3.42
1715 8995 3.069729 GTGGGGATTACAGTACTGCTAGG 59.930 52.174 22.90 0.00 0.00 3.02
1716 8996 3.052414 TGGGGATTACAGTACTGCTAGGA 60.052 47.826 22.90 4.87 0.00 2.94
1717 8997 3.965347 GGGGATTACAGTACTGCTAGGAA 59.035 47.826 22.90 9.56 0.00 3.36
1718 8998 4.407945 GGGGATTACAGTACTGCTAGGAAA 59.592 45.833 22.90 8.07 0.00 3.13
1719 8999 5.358090 GGGATTACAGTACTGCTAGGAAAC 58.642 45.833 22.90 7.97 0.00 2.78
1721 9001 6.043411 GGATTACAGTACTGCTAGGAAACTG 58.957 44.000 22.90 19.00 43.88 3.16
1723 9003 4.957684 ACAGTACTGCTAGGAAACTGTT 57.042 40.909 22.90 9.47 46.38 3.16
1724 9004 4.632153 ACAGTACTGCTAGGAAACTGTTG 58.368 43.478 22.90 5.03 46.38 3.33
1725 9005 3.433615 CAGTACTGCTAGGAAACTGTTGC 59.566 47.826 10.54 0.00 43.88 4.17
1726 9006 1.512926 ACTGCTAGGAAACTGTTGCG 58.487 50.000 0.00 0.00 43.88 4.85
1727 9007 1.202651 ACTGCTAGGAAACTGTTGCGT 60.203 47.619 0.00 0.00 43.88 5.24
1788 9068 2.050895 CTAGGCGATCGTGCTCCG 60.051 66.667 17.81 0.00 38.13 4.63
1811 9092 2.027469 CGCTAGGGTTAGGGTTTTCTGT 60.027 50.000 0.00 0.00 35.67 3.41
1826 9107 0.545309 TCTGTTGGGGGTGGAGAGAG 60.545 60.000 0.00 0.00 0.00 3.20
1925 9208 3.068691 CGGAGAGGGCGAGTGGAA 61.069 66.667 0.00 0.00 0.00 3.53
1978 9261 2.126888 GTTTCGACGACGGCGGTA 60.127 61.111 24.91 9.14 43.17 4.02
2028 9311 2.257409 GATTCTGCAAGCCGGGGAGA 62.257 60.000 2.18 0.00 0.00 3.71
2058 9341 2.149383 AGGCTGAGTGCAAGACCCA 61.149 57.895 0.00 0.00 45.15 4.51
2060 9343 0.610232 GGCTGAGTGCAAGACCCAAT 60.610 55.000 0.00 0.00 45.15 3.16
2094 9377 1.704628 TCTTTCAGCAAGGATGGGTGA 59.295 47.619 0.00 0.00 46.47 4.02
2146 9429 3.003793 GGCTGGTTTTTGAAGAGACAGAC 59.996 47.826 0.00 0.00 0.00 3.51
2147 9430 3.879892 GCTGGTTTTTGAAGAGACAGACT 59.120 43.478 0.00 0.00 0.00 3.24
2377 10909 9.567776 TGGTAGTTTGATTTCTCTGTTTTGATA 57.432 29.630 0.00 0.00 0.00 2.15
2403 11154 0.669625 GACTACGAAGGTGGTGTGCC 60.670 60.000 0.00 0.00 38.06 5.01
2424 11175 3.126001 GCCATCGGAGATGGTGATTTA 57.874 47.619 24.68 0.00 45.12 1.40
2425 11176 2.808543 GCCATCGGAGATGGTGATTTAC 59.191 50.000 24.68 7.60 45.12 2.01
2426 11177 3.403038 CCATCGGAGATGGTGATTTACC 58.597 50.000 18.25 0.00 45.14 2.85
2440 11191 4.825085 GTGATTTACCACCTGACAAAAGGA 59.175 41.667 0.00 0.00 40.02 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.189594 TCTGCTGACCCTTTCATGTG 57.810 50.000 0.00 0.00 32.17 3.21
7 8 3.349927 TCATTCTGCTGACCCTTTCATG 58.650 45.455 0.00 0.00 32.17 3.07
8 9 3.726557 TCATTCTGCTGACCCTTTCAT 57.273 42.857 0.00 0.00 32.17 2.57
9 10 3.726557 ATCATTCTGCTGACCCTTTCA 57.273 42.857 0.00 0.00 0.00 2.69
11 12 5.813513 AAAAATCATTCTGCTGACCCTTT 57.186 34.783 0.00 0.00 0.00 3.11
30 31 7.330700 CACAAACTGACCTGCTTTTAAGAAAAA 59.669 33.333 0.00 0.00 33.58 1.94
32 33 6.151985 TCACAAACTGACCTGCTTTTAAGAAA 59.848 34.615 0.00 0.00 0.00 2.52
33 34 5.650266 TCACAAACTGACCTGCTTTTAAGAA 59.350 36.000 0.00 0.00 0.00 2.52
34 35 5.189928 TCACAAACTGACCTGCTTTTAAGA 58.810 37.500 0.00 0.00 0.00 2.10
35 36 5.499139 TCACAAACTGACCTGCTTTTAAG 57.501 39.130 0.00 0.00 0.00 1.85
36 37 6.463995 AATCACAAACTGACCTGCTTTTAA 57.536 33.333 0.00 0.00 0.00 1.52
37 38 6.096141 TCAAATCACAAACTGACCTGCTTTTA 59.904 34.615 0.00 0.00 0.00 1.52
38 39 5.105392 TCAAATCACAAACTGACCTGCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
39 40 4.402155 TCAAATCACAAACTGACCTGCTTT 59.598 37.500 0.00 0.00 0.00 3.51
40 41 3.953612 TCAAATCACAAACTGACCTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
41 42 3.554934 TCAAATCACAAACTGACCTGCT 58.445 40.909 0.00 0.00 0.00 4.24
42 43 3.988379 TCAAATCACAAACTGACCTGC 57.012 42.857 0.00 0.00 0.00 4.85
44 45 4.692625 CGAGATCAAATCACAAACTGACCT 59.307 41.667 0.00 0.00 0.00 3.85
45 46 4.670221 GCGAGATCAAATCACAAACTGACC 60.670 45.833 0.00 0.00 0.00 4.02
46 47 4.398247 GCGAGATCAAATCACAAACTGAC 58.602 43.478 0.00 0.00 0.00 3.51
49 50 2.749621 GGGCGAGATCAAATCACAAACT 59.250 45.455 0.00 0.00 0.00 2.66
50 51 2.749621 AGGGCGAGATCAAATCACAAAC 59.250 45.455 0.00 0.00 0.00 2.93
51 52 3.009723 GAGGGCGAGATCAAATCACAAA 58.990 45.455 0.00 0.00 0.00 2.83
52 53 2.632377 GAGGGCGAGATCAAATCACAA 58.368 47.619 0.00 0.00 0.00 3.33
53 54 1.471501 CGAGGGCGAGATCAAATCACA 60.472 52.381 0.00 0.00 40.82 3.58
54 55 1.212616 CGAGGGCGAGATCAAATCAC 58.787 55.000 0.00 0.00 40.82 3.06
56 57 0.601311 CCCGAGGGCGAGATCAAATC 60.601 60.000 0.00 0.00 40.82 2.17
57 58 1.338136 ACCCGAGGGCGAGATCAAAT 61.338 55.000 8.33 0.00 40.82 2.32
60 61 2.833582 GACCCGAGGGCGAGATCA 60.834 66.667 8.33 0.00 40.82 2.92
62 63 1.338136 ATTTGACCCGAGGGCGAGAT 61.338 55.000 8.33 0.00 40.82 2.75
63 64 0.685131 TATTTGACCCGAGGGCGAGA 60.685 55.000 8.33 0.00 40.82 4.04
65 66 1.518774 GTATTTGACCCGAGGGCGA 59.481 57.895 8.33 0.00 40.82 5.54
66 67 1.881252 CGTATTTGACCCGAGGGCG 60.881 63.158 8.33 0.00 39.32 6.13
67 68 1.087771 CACGTATTTGACCCGAGGGC 61.088 60.000 8.33 1.87 39.32 5.19
69 70 2.596904 ATCACGTATTTGACCCGAGG 57.403 50.000 0.00 0.00 0.00 4.63
70 71 4.032900 CAGAAATCACGTATTTGACCCGAG 59.967 45.833 7.44 0.00 37.93 4.63
71 72 3.930229 CAGAAATCACGTATTTGACCCGA 59.070 43.478 7.44 0.00 37.93 5.14
73 74 3.181500 GGCAGAAATCACGTATTTGACCC 60.181 47.826 7.44 2.95 37.93 4.46
74 75 3.689649 AGGCAGAAATCACGTATTTGACC 59.310 43.478 7.44 6.42 37.93 4.02
76 77 4.631377 CAGAGGCAGAAATCACGTATTTGA 59.369 41.667 7.44 0.00 37.93 2.69
78 79 3.375299 GCAGAGGCAGAAATCACGTATTT 59.625 43.478 0.00 0.00 39.17 1.40
79 80 2.939103 GCAGAGGCAGAAATCACGTATT 59.061 45.455 0.00 0.00 40.72 1.89
80 81 2.555199 GCAGAGGCAGAAATCACGTAT 58.445 47.619 0.00 0.00 40.72 3.06
81 82 2.010145 GCAGAGGCAGAAATCACGTA 57.990 50.000 0.00 0.00 40.72 3.57
82 83 2.846371 GCAGAGGCAGAAATCACGT 58.154 52.632 0.00 0.00 40.72 4.49
95 96 3.108144 CAAAAACGTTCACCTTGCAGAG 58.892 45.455 0.00 0.00 0.00 3.35
96 97 2.750166 TCAAAAACGTTCACCTTGCAGA 59.250 40.909 0.00 0.00 0.00 4.26
97 98 2.851824 GTCAAAAACGTTCACCTTGCAG 59.148 45.455 0.00 0.00 0.00 4.41
98 99 2.416162 GGTCAAAAACGTTCACCTTGCA 60.416 45.455 0.00 0.00 0.00 4.08
99 100 2.190161 GGTCAAAAACGTTCACCTTGC 58.810 47.619 0.00 0.92 0.00 4.01
100 101 2.096174 TCGGTCAAAAACGTTCACCTTG 59.904 45.455 0.00 3.77 0.00 3.61
101 102 2.353579 CTCGGTCAAAAACGTTCACCTT 59.646 45.455 0.00 0.00 0.00 3.50
102 103 1.937899 CTCGGTCAAAAACGTTCACCT 59.062 47.619 0.00 0.00 0.00 4.00
103 104 1.596220 GCTCGGTCAAAAACGTTCACC 60.596 52.381 0.00 4.97 0.00 4.02
104 105 1.738432 GCTCGGTCAAAAACGTTCAC 58.262 50.000 0.00 0.00 0.00 3.18
105 106 0.302288 CGCTCGGTCAAAAACGTTCA 59.698 50.000 0.00 0.00 0.00 3.18
106 107 0.990295 GCGCTCGGTCAAAAACGTTC 60.990 55.000 0.00 0.00 0.00 3.95
107 108 1.010462 GCGCTCGGTCAAAAACGTT 60.010 52.632 0.00 0.00 0.00 3.99
108 109 2.629763 GCGCTCGGTCAAAAACGT 59.370 55.556 0.00 0.00 0.00 3.99
109 110 2.419100 TTCGCGCTCGGTCAAAAACG 62.419 55.000 5.56 0.00 36.13 3.60
110 111 0.721483 CTTCGCGCTCGGTCAAAAAC 60.721 55.000 5.56 0.00 36.13 2.43
111 112 1.567537 CTTCGCGCTCGGTCAAAAA 59.432 52.632 5.56 0.00 36.13 1.94
112 113 2.950172 GCTTCGCGCTCGGTCAAAA 61.950 57.895 5.56 0.00 36.13 2.44
113 114 3.411351 GCTTCGCGCTCGGTCAAA 61.411 61.111 5.56 0.00 36.13 2.69
122 123 3.243892 CTCGAGTGAGCTTCGCGC 61.244 66.667 3.62 0.00 34.96 6.86
159 160 1.356624 CTTTCATTCCCGCGATGGC 59.643 57.895 8.23 0.00 35.87 4.40
160 161 2.024918 CCTTTCATTCCCGCGATGG 58.975 57.895 8.23 0.00 37.55 3.51
161 162 1.356624 GCCTTTCATTCCCGCGATG 59.643 57.895 8.23 3.27 0.00 3.84
162 163 1.077787 TGCCTTTCATTCCCGCGAT 60.078 52.632 8.23 0.00 0.00 4.58
163 164 1.745115 CTGCCTTTCATTCCCGCGA 60.745 57.895 8.23 0.00 0.00 5.87
164 165 1.745115 TCTGCCTTTCATTCCCGCG 60.745 57.895 0.00 0.00 0.00 6.46
165 166 1.803289 GTCTGCCTTTCATTCCCGC 59.197 57.895 0.00 0.00 0.00 6.13
166 167 0.673644 ACGTCTGCCTTTCATTCCCG 60.674 55.000 0.00 0.00 0.00 5.14
167 168 0.804989 CACGTCTGCCTTTCATTCCC 59.195 55.000 0.00 0.00 0.00 3.97
168 169 0.804989 CCACGTCTGCCTTTCATTCC 59.195 55.000 0.00 0.00 0.00 3.01
169 170 1.808411 TCCACGTCTGCCTTTCATTC 58.192 50.000 0.00 0.00 0.00 2.67
170 171 2.489329 CAATCCACGTCTGCCTTTCATT 59.511 45.455 0.00 0.00 0.00 2.57
171 172 2.086869 CAATCCACGTCTGCCTTTCAT 58.913 47.619 0.00 0.00 0.00 2.57
172 173 1.071542 TCAATCCACGTCTGCCTTTCA 59.928 47.619 0.00 0.00 0.00 2.69
173 174 1.808411 TCAATCCACGTCTGCCTTTC 58.192 50.000 0.00 0.00 0.00 2.62
174 175 2.496899 ATCAATCCACGTCTGCCTTT 57.503 45.000 0.00 0.00 0.00 3.11
175 176 2.026822 AGAATCAATCCACGTCTGCCTT 60.027 45.455 0.00 0.00 0.00 4.35
176 177 1.556911 AGAATCAATCCACGTCTGCCT 59.443 47.619 0.00 0.00 0.00 4.75
177 178 1.936547 GAGAATCAATCCACGTCTGCC 59.063 52.381 0.00 0.00 33.17 4.85
178 179 1.590238 CGAGAATCAATCCACGTCTGC 59.410 52.381 0.00 0.00 33.17 4.26
179 180 1.590238 GCGAGAATCAATCCACGTCTG 59.410 52.381 0.00 0.00 33.10 3.51
180 181 1.204704 TGCGAGAATCAATCCACGTCT 59.795 47.619 0.00 0.00 33.10 4.18
181 182 1.640428 TGCGAGAATCAATCCACGTC 58.360 50.000 0.00 0.00 33.10 4.34
182 183 2.205074 GATGCGAGAATCAATCCACGT 58.795 47.619 0.00 0.00 33.10 4.49
183 184 1.190984 CGATGCGAGAATCAATCCACG 59.809 52.381 0.00 0.00 33.17 4.94
184 185 2.473816 TCGATGCGAGAATCAATCCAC 58.526 47.619 0.00 0.00 33.17 4.02
185 186 2.888834 TCGATGCGAGAATCAATCCA 57.111 45.000 0.00 0.00 33.17 3.41
186 187 2.670414 GGATCGATGCGAGAATCAATCC 59.330 50.000 0.54 0.00 39.91 3.01
187 188 3.367327 CAGGATCGATGCGAGAATCAATC 59.633 47.826 11.52 0.00 39.91 2.67
188 189 3.244009 ACAGGATCGATGCGAGAATCAAT 60.244 43.478 11.52 0.00 39.91 2.57
189 190 2.101415 ACAGGATCGATGCGAGAATCAA 59.899 45.455 11.52 0.00 39.91 2.57
190 191 1.683385 ACAGGATCGATGCGAGAATCA 59.317 47.619 11.52 0.00 39.91 2.57
191 192 2.323959 GACAGGATCGATGCGAGAATC 58.676 52.381 11.52 2.69 39.91 2.52
192 193 1.000283 GGACAGGATCGATGCGAGAAT 60.000 52.381 11.52 0.00 39.91 2.40
193 194 0.385751 GGACAGGATCGATGCGAGAA 59.614 55.000 11.52 0.00 39.91 2.87
194 195 1.786049 CGGACAGGATCGATGCGAGA 61.786 60.000 11.52 0.00 39.91 4.04
195 196 1.371022 CGGACAGGATCGATGCGAG 60.371 63.158 11.52 10.67 39.91 5.03
196 197 2.060004 GACGGACAGGATCGATGCGA 62.060 60.000 11.52 0.00 41.13 5.10
197 198 1.658717 GACGGACAGGATCGATGCG 60.659 63.158 11.52 8.98 0.00 4.73
198 199 1.300233 GGACGGACAGGATCGATGC 60.300 63.158 9.16 9.16 0.00 3.91
199 200 1.008424 CGGACGGACAGGATCGATG 60.008 63.158 0.54 0.00 0.00 3.84
200 201 1.445716 GACGGACGGACAGGATCGAT 61.446 60.000 0.00 0.00 0.00 3.59
201 202 2.045634 ACGGACGGACAGGATCGA 60.046 61.111 0.00 0.00 0.00 3.59
202 203 2.408022 GACGGACGGACAGGATCG 59.592 66.667 0.00 0.00 0.00 3.69
203 204 2.806237 GGACGGACGGACAGGATC 59.194 66.667 0.00 0.00 0.00 3.36
204 205 3.138798 CGGACGGACGGACAGGAT 61.139 66.667 0.00 0.00 0.00 3.24
205 206 4.648626 ACGGACGGACGGACAGGA 62.649 66.667 6.00 0.00 38.39 3.86
206 207 4.415332 CACGGACGGACGGACAGG 62.415 72.222 6.00 0.00 38.39 4.00
207 208 3.667282 ACACGGACGGACGGACAG 61.667 66.667 6.00 0.00 38.39 3.51
208 209 3.968568 CACACGGACGGACGGACA 61.969 66.667 6.00 0.00 38.39 4.02
209 210 3.886329 GACACACGGACGGACGGAC 62.886 68.421 6.00 0.00 38.39 4.79
210 211 3.663176 GACACACGGACGGACGGA 61.663 66.667 6.00 0.00 38.39 4.69
211 212 3.891586 CTGACACACGGACGGACGG 62.892 68.421 6.00 0.00 38.39 4.79
212 213 2.428569 CTGACACACGGACGGACG 60.429 66.667 0.00 0.00 40.31 4.79
213 214 2.733593 GCTGACACACGGACGGAC 60.734 66.667 0.00 0.00 0.00 4.79
214 215 4.337060 CGCTGACACACGGACGGA 62.337 66.667 0.00 0.00 0.00 4.69
244 245 1.895231 GCCGGGTGAAAGGTTTCGT 60.895 57.895 2.18 0.00 40.01 3.85
245 246 2.622962 GGCCGGGTGAAAGGTTTCG 61.623 63.158 2.18 0.00 40.01 3.46
283 285 1.990563 GAATGTGAACGTCGACCGAAT 59.009 47.619 10.58 0.64 40.70 3.34
284 286 1.269154 TGAATGTGAACGTCGACCGAA 60.269 47.619 10.58 0.00 40.70 4.30
285 287 0.311477 TGAATGTGAACGTCGACCGA 59.689 50.000 10.58 0.00 40.70 4.69
286 288 1.320555 GATGAATGTGAACGTCGACCG 59.679 52.381 10.58 7.90 44.03 4.79
292 299 2.603110 CCGAATCGATGAATGTGAACGT 59.397 45.455 3.36 0.00 0.00 3.99
294 301 2.286418 GGCCGAATCGATGAATGTGAAC 60.286 50.000 3.36 0.00 0.00 3.18
302 309 1.226859 GACACGGCCGAATCGATGA 60.227 57.895 35.90 0.00 0.00 2.92
310 317 1.169661 AAAAGCATTGACACGGCCGA 61.170 50.000 35.90 9.64 0.00 5.54
347 4153 4.317551 CGTACTACGTTCGCATCATCATAC 59.682 45.833 0.00 0.00 36.74 2.39
349 4155 3.297472 CGTACTACGTTCGCATCATCAT 58.703 45.455 0.00 0.00 36.74 2.45
350 4156 2.711885 CGTACTACGTTCGCATCATCA 58.288 47.619 0.00 0.00 36.74 3.07
374 4190 4.325972 GACGTACCCTATTCCTCCTCTAG 58.674 52.174 0.00 0.00 0.00 2.43
376 4192 2.158490 GGACGTACCCTATTCCTCCTCT 60.158 54.545 0.00 0.00 0.00 3.69
398 4217 2.014335 TCAACATCTGATGCTCACGG 57.986 50.000 17.24 1.78 0.00 4.94
438 4295 4.747810 AGAAGAAACAGTTGGCACTTTTG 58.252 39.130 0.00 0.00 0.00 2.44
443 4300 4.354587 CTCAAAGAAGAAACAGTTGGCAC 58.645 43.478 0.00 0.00 0.00 5.01
444 4301 3.381272 CCTCAAAGAAGAAACAGTTGGCA 59.619 43.478 0.00 0.00 0.00 4.92
445 4302 3.243535 CCCTCAAAGAAGAAACAGTTGGC 60.244 47.826 0.00 0.00 0.00 4.52
446 4303 3.319122 CCCCTCAAAGAAGAAACAGTTGG 59.681 47.826 0.00 0.00 0.00 3.77
447 4304 4.207165 TCCCCTCAAAGAAGAAACAGTTG 58.793 43.478 0.00 0.00 0.00 3.16
448 4305 4.519906 TCCCCTCAAAGAAGAAACAGTT 57.480 40.909 0.00 0.00 0.00 3.16
449 4306 4.519906 TTCCCCTCAAAGAAGAAACAGT 57.480 40.909 0.00 0.00 0.00 3.55
450 4307 5.852282 TTTTCCCCTCAAAGAAGAAACAG 57.148 39.130 0.00 0.00 0.00 3.16
470 4327 6.260271 GTCAAACAGCTGGTAGTACTCTTTTT 59.740 38.462 19.93 1.60 0.00 1.94
471 4328 5.758784 GTCAAACAGCTGGTAGTACTCTTTT 59.241 40.000 19.93 2.15 0.00 2.27
472 4329 5.163343 TGTCAAACAGCTGGTAGTACTCTTT 60.163 40.000 19.93 2.92 0.00 2.52
473 4330 4.344102 TGTCAAACAGCTGGTAGTACTCTT 59.656 41.667 19.93 0.00 0.00 2.85
474 4331 3.895656 TGTCAAACAGCTGGTAGTACTCT 59.104 43.478 19.93 0.00 0.00 3.24
475 4332 3.988517 GTGTCAAACAGCTGGTAGTACTC 59.011 47.826 19.93 7.88 0.00 2.59
476 4333 3.641906 AGTGTCAAACAGCTGGTAGTACT 59.358 43.478 19.93 11.45 0.00 2.73
477 4334 3.991367 AGTGTCAAACAGCTGGTAGTAC 58.009 45.455 19.93 11.14 0.00 2.73
478 4335 4.100344 TCAAGTGTCAAACAGCTGGTAGTA 59.900 41.667 19.93 0.00 0.00 1.82
479 4336 3.118408 TCAAGTGTCAAACAGCTGGTAGT 60.118 43.478 19.93 0.00 0.00 2.73
480 4337 3.466836 TCAAGTGTCAAACAGCTGGTAG 58.533 45.455 19.93 6.94 0.00 3.18
503 4360 0.521291 ATGATTGGCCGTTGTTGTCG 59.479 50.000 0.00 0.00 0.00 4.35
548 4416 1.139058 ACCTTCGTTCAGTGCACTTCT 59.861 47.619 18.94 0.00 0.00 2.85
611 4489 1.473677 CAGAGAGAGACAGCTGACCAG 59.526 57.143 23.35 0.00 0.00 4.00
667 4574 2.512896 GAGGAGGGCGATGGCAAT 59.487 61.111 1.01 0.00 42.47 3.56
722 4640 0.254747 TTCTCGGGATTTTGCGGGAT 59.745 50.000 0.00 0.00 0.00 3.85
723 4641 0.675522 GTTCTCGGGATTTTGCGGGA 60.676 55.000 0.00 0.00 0.00 5.14
729 4647 1.702957 TGAGGGTGTTCTCGGGATTTT 59.297 47.619 0.00 0.00 36.61 1.82
842 4790 3.383825 GCGGGACTAAATAGGAAGAGTGA 59.616 47.826 0.00 0.00 0.00 3.41
887 5109 1.303309 GTGACAGTTTGCTCAGCTGT 58.697 50.000 14.67 5.81 44.97 4.40
892 5150 2.279741 GAGTGTGTGACAGTTTGCTCA 58.720 47.619 0.00 0.00 30.64 4.26
898 5156 2.501723 AGTTCTGGAGTGTGTGACAGTT 59.498 45.455 0.00 0.00 30.64 3.16
923 5184 0.389391 CGTGGGTTGTGTCAGAGACT 59.611 55.000 0.00 0.00 33.15 3.24
924 5185 0.104304 ACGTGGGTTGTGTCAGAGAC 59.896 55.000 0.00 0.00 0.00 3.36
925 5186 0.387929 GACGTGGGTTGTGTCAGAGA 59.612 55.000 0.00 0.00 32.91 3.10
926 5187 0.600255 GGACGTGGGTTGTGTCAGAG 60.600 60.000 0.00 0.00 34.32 3.35
927 5188 1.331399 TGGACGTGGGTTGTGTCAGA 61.331 55.000 0.00 0.00 34.32 3.27
928 5189 0.250295 ATGGACGTGGGTTGTGTCAG 60.250 55.000 0.00 0.00 34.32 3.51
929 5190 0.250124 GATGGACGTGGGTTGTGTCA 60.250 55.000 0.00 0.00 34.32 3.58
930 5191 0.034896 AGATGGACGTGGGTTGTGTC 59.965 55.000 0.00 0.00 0.00 3.67
931 5192 0.034896 GAGATGGACGTGGGTTGTGT 59.965 55.000 0.00 0.00 0.00 3.72
932 5193 0.321671 AGAGATGGACGTGGGTTGTG 59.678 55.000 0.00 0.00 0.00 3.33
942 5203 4.211920 ACTGGTAGAAGCTAGAGATGGAC 58.788 47.826 0.00 0.00 0.00 4.02
964 5229 1.308783 TTGGTGCGTGTGTGCTTCAA 61.309 50.000 0.00 0.00 35.36 2.69
1103 5380 1.906824 TGCGGTCTTTCTCCCTCGT 60.907 57.895 0.00 0.00 0.00 4.18
1107 5384 2.035442 GCTGTGCGGTCTTTCTCCC 61.035 63.158 0.00 0.00 0.00 4.30
1216 5496 4.074526 ATCGCTGTCACCGCTGCT 62.075 61.111 0.00 0.00 0.00 4.24
1224 5504 3.690280 TCCGCACCATCGCTGTCA 61.690 61.111 0.00 0.00 0.00 3.58
1244 5530 4.097361 GGAAGGTGGCGTCCTCCC 62.097 72.222 11.71 0.00 37.86 4.30
1264 5550 1.589803 CGGGAGTTGAAGTTTCGGTT 58.410 50.000 0.00 0.00 0.00 4.44
1329 5618 2.266554 GACTTCAGTCTTGAGGCGATG 58.733 52.381 0.00 0.00 41.65 3.84
1330 5619 1.205893 GGACTTCAGTCTTGAGGCGAT 59.794 52.381 6.91 0.00 44.20 4.58
1331 5620 0.603569 GGACTTCAGTCTTGAGGCGA 59.396 55.000 6.91 0.00 44.20 5.54
1332 5621 0.605589 AGGACTTCAGTCTTGAGGCG 59.394 55.000 6.91 0.00 44.20 5.52
1333 5622 2.810852 CAAAGGACTTCAGTCTTGAGGC 59.189 50.000 6.91 0.00 44.20 4.70
1334 5623 2.810852 GCAAAGGACTTCAGTCTTGAGG 59.189 50.000 11.32 0.00 44.20 3.86
1335 5624 3.497640 CAGCAAAGGACTTCAGTCTTGAG 59.502 47.826 11.32 1.49 44.20 3.02
1336 5625 3.470709 CAGCAAAGGACTTCAGTCTTGA 58.529 45.455 11.32 0.00 44.20 3.02
1337 5626 2.031333 GCAGCAAAGGACTTCAGTCTTG 60.031 50.000 6.91 5.88 44.20 3.02
1338 5627 2.158696 AGCAGCAAAGGACTTCAGTCTT 60.159 45.455 6.91 0.00 44.20 3.01
1339 5628 1.419387 AGCAGCAAAGGACTTCAGTCT 59.581 47.619 6.91 0.00 44.20 3.24
1340 5629 1.889545 AGCAGCAAAGGACTTCAGTC 58.110 50.000 0.00 0.00 44.04 3.51
1341 5630 2.158696 AGAAGCAGCAAAGGACTTCAGT 60.159 45.455 0.00 0.00 40.77 3.41
1425 6004 4.848562 ACCTCGCTACGATTCAATATCA 57.151 40.909 0.00 0.00 34.61 2.15
1426 6005 5.940595 ACTACCTCGCTACGATTCAATATC 58.059 41.667 0.00 0.00 34.61 1.63
1427 6006 5.961396 ACTACCTCGCTACGATTCAATAT 57.039 39.130 0.00 0.00 34.61 1.28
1429 6008 4.320348 GCTACTACCTCGCTACGATTCAAT 60.320 45.833 0.00 0.00 34.61 2.57
1431 6010 2.547211 GCTACTACCTCGCTACGATTCA 59.453 50.000 0.00 0.00 34.61 2.57
1432 6011 2.547211 TGCTACTACCTCGCTACGATTC 59.453 50.000 0.00 0.00 34.61 2.52
1455 6051 0.391661 ATGGTACTGGTTCGCTGCTG 60.392 55.000 0.00 0.00 0.00 4.41
1461 6057 2.022764 TGCATCATGGTACTGGTTCG 57.977 50.000 0.00 0.00 0.00 3.95
1463 6059 3.370840 ACATGCATCATGGTACTGGTT 57.629 42.857 11.01 0.00 45.16 3.67
1545 6164 3.649073 CCTTTTCCCGATCAAACCAAAC 58.351 45.455 0.00 0.00 0.00 2.93
1573 6192 7.309621 CCTTCACAGTTCATCATCCAAAAGAAT 60.310 37.037 0.00 0.00 0.00 2.40
1615 6238 3.909651 ACCCGCCACCAACCCAAT 61.910 61.111 0.00 0.00 0.00 3.16
1669 8940 1.094785 ATTGTTGGATACGTGCAGGC 58.905 50.000 6.26 0.00 42.51 4.85
1686 8966 4.713321 AGTACTGTAATCCCCACGTACATT 59.287 41.667 0.00 0.00 32.91 2.71
1698 8978 6.631962 ACAGTTTCCTAGCAGTACTGTAATC 58.368 40.000 23.44 7.38 45.38 1.75
1699 8979 6.607004 ACAGTTTCCTAGCAGTACTGTAAT 57.393 37.500 23.44 12.64 45.38 1.89
1700 8980 6.220930 CAACAGTTTCCTAGCAGTACTGTAA 58.779 40.000 23.44 11.30 46.20 2.41
1704 8984 3.665190 GCAACAGTTTCCTAGCAGTACT 58.335 45.455 0.00 0.00 0.00 2.73
1705 8985 2.412089 CGCAACAGTTTCCTAGCAGTAC 59.588 50.000 0.00 0.00 0.00 2.73
1706 8986 2.036733 ACGCAACAGTTTCCTAGCAGTA 59.963 45.455 0.00 0.00 0.00 2.74
1707 8987 1.202651 ACGCAACAGTTTCCTAGCAGT 60.203 47.619 0.00 0.00 0.00 4.40
1708 8988 1.195448 CACGCAACAGTTTCCTAGCAG 59.805 52.381 0.00 0.00 0.00 4.24
1709 8989 1.225855 CACGCAACAGTTTCCTAGCA 58.774 50.000 0.00 0.00 0.00 3.49
1710 8990 0.517316 CCACGCAACAGTTTCCTAGC 59.483 55.000 0.00 0.00 0.00 3.42
1711 8991 1.156736 CCCACGCAACAGTTTCCTAG 58.843 55.000 0.00 0.00 0.00 3.02
1712 8992 0.470766 ACCCACGCAACAGTTTCCTA 59.529 50.000 0.00 0.00 0.00 2.94
1713 8993 0.818040 GACCCACGCAACAGTTTCCT 60.818 55.000 0.00 0.00 0.00 3.36
1714 8994 1.652563 GACCCACGCAACAGTTTCC 59.347 57.895 0.00 0.00 0.00 3.13
1715 8995 1.098712 TGGACCCACGCAACAGTTTC 61.099 55.000 0.00 0.00 0.00 2.78
1716 8996 1.077357 TGGACCCACGCAACAGTTT 60.077 52.632 0.00 0.00 0.00 2.66
1717 8997 1.822186 GTGGACCCACGCAACAGTT 60.822 57.895 3.13 0.00 37.19 3.16
1718 8998 2.203153 GTGGACCCACGCAACAGT 60.203 61.111 3.13 0.00 37.19 3.55
1727 9007 0.764890 CTTTCTCTGTGGTGGACCCA 59.235 55.000 0.00 0.00 42.51 4.51
1788 9068 0.034767 AAAACCCTAACCCTAGCGCC 60.035 55.000 2.29 0.00 0.00 6.53
1811 9092 0.545309 CAGACTCTCTCCACCCCCAA 60.545 60.000 0.00 0.00 0.00 4.12
1962 9245 2.176546 CTACCGCCGTCGTCGAAA 59.823 61.111 2.98 0.00 39.71 3.46
1997 9280 1.414181 TGCAGAATCCCCGATCTTCTC 59.586 52.381 0.00 0.00 0.00 2.87
2040 9323 1.708993 TTGGGTCTTGCACTCAGCCT 61.709 55.000 8.11 0.00 44.83 4.58
2044 9327 1.985159 AGGTATTGGGTCTTGCACTCA 59.015 47.619 0.00 0.00 31.46 3.41
2058 9341 2.887151 AAGACTTGCTGCCAGGTATT 57.113 45.000 5.67 0.00 30.62 1.89
2060 9343 1.419762 TGAAAGACTTGCTGCCAGGTA 59.580 47.619 5.67 0.00 30.62 3.08
2146 9429 2.168521 TGACGCCTTGGGAAGAGATTAG 59.831 50.000 0.00 0.00 0.00 1.73
2147 9430 2.184533 TGACGCCTTGGGAAGAGATTA 58.815 47.619 0.00 0.00 0.00 1.75
2377 10909 4.202326 ACACCACCTTCGTAGTCTTTCATT 60.202 41.667 0.00 0.00 0.00 2.57
2403 11154 0.250038 AATCACCATCTCCGATGGCG 60.250 55.000 19.87 12.52 42.82 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.