Multiple sequence alignment - TraesCS7A01G513600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G513600 chr7A 100.000 3990 0 0 1 3990 700286605 700290594 0.000000e+00 7369.0
1 TraesCS7A01G513600 chr7A 96.627 2075 49 7 641 2712 66691247 66689191 0.000000e+00 3424.0
2 TraesCS7A01G513600 chr7A 98.179 1263 23 0 641 1903 38955048 38953786 0.000000e+00 2206.0
3 TraesCS7A01G513600 chr7A 90.867 646 20 16 1 641 700329464 700330075 0.000000e+00 830.0
4 TraesCS7A01G513600 chr7A 99.032 310 3 0 3681 3990 66689193 66688884 1.250000e-154 556.0
5 TraesCS7A01G513600 chr7A 82.667 225 30 6 1 217 699901033 699900810 1.460000e-44 191.0
6 TraesCS7A01G513600 chr7A 97.436 78 1 1 565 641 726504418 726504495 9.000000e-27 132.0
7 TraesCS7A01G513600 chr1A 98.567 3350 32 2 641 3990 586731317 586727984 0.000000e+00 5906.0
8 TraesCS7A01G513600 chr1A 83.513 1116 137 22 1911 3016 290216410 290215332 0.000000e+00 998.0
9 TraesCS7A01G513600 chr1A 85.344 887 111 9 3121 3990 290215201 290214317 0.000000e+00 900.0
10 TraesCS7A01G513600 chr1A 92.935 184 12 1 459 641 497189730 497189547 2.360000e-67 267.0
11 TraesCS7A01G513600 chr1A 90.698 43 4 0 3185 3227 290215204 290215162 1.550000e-04 58.4
12 TraesCS7A01G513600 chr4A 98.448 3351 32 4 641 3990 502364851 502361520 0.000000e+00 5882.0
13 TraesCS7A01G513600 chr4A 98.390 3354 38 5 637 3990 90065737 90069074 0.000000e+00 5880.0
14 TraesCS7A01G513600 chr4A 97.821 3350 55 3 641 3990 90051383 90054714 0.000000e+00 5766.0
15 TraesCS7A01G513600 chr4A 98.693 612 7 1 637 1248 90070887 90071497 0.000000e+00 1085.0
16 TraesCS7A01G513600 chr4B 96.321 1767 40 2 637 2379 532722200 532723965 0.000000e+00 2880.0
17 TraesCS7A01G513600 chr4B 85.621 918 113 12 3090 3990 87817499 87818414 0.000000e+00 946.0
18 TraesCS7A01G513600 chr4B 83.560 663 87 11 1913 2574 87816813 87817454 5.710000e-168 601.0
19 TraesCS7A01G513600 chr4B 86.842 114 10 4 3118 3227 87817457 87817569 5.410000e-24 122.0
20 TraesCS7A01G513600 chr4B 100.000 30 0 0 3185 3214 87817457 87817486 5.570000e-04 56.5
21 TraesCS7A01G513600 chr7B 96.915 1329 26 1 1715 3043 56998587 56997274 0.000000e+00 2213.0
22 TraesCS7A01G513600 chr7B 92.694 219 16 0 1 219 699194503 699194721 2.310000e-82 316.0
23 TraesCS7A01G513600 chr7B 89.630 135 11 1 1 132 697284147 697284013 6.860000e-38 169.0
24 TraesCS7A01G513600 chr7B 89.831 118 6 1 219 336 694521530 694521641 3.210000e-31 147.0
25 TraesCS7A01G513600 chr4D 98.493 929 13 1 641 1569 82856465 82855538 0.000000e+00 1637.0
26 TraesCS7A01G513600 chr3D 96.901 710 17 1 1260 1969 253529120 253528416 0.000000e+00 1184.0
27 TraesCS7A01G513600 chr3D 94.892 744 13 8 637 1356 253529863 253529121 0.000000e+00 1140.0
28 TraesCS7A01G513600 chr2A 79.009 848 112 30 1906 2749 49923812 49923027 1.640000e-143 520.0
29 TraesCS7A01G513600 chr7D 88.318 428 13 15 1 393 514901073 514901498 2.790000e-131 479.0
30 TraesCS7A01G513600 chr7D 92.857 224 11 2 1 219 608208599 608208822 1.790000e-83 320.0
31 TraesCS7A01G513600 chr7D 89.520 229 14 2 1 219 610480179 610479951 8.440000e-72 281.0
32 TraesCS7A01G513600 chr7D 89.720 107 3 3 219 324 608208935 608209034 3.240000e-26 130.0
33 TraesCS7A01G513600 chr3B 94.006 317 12 1 1680 1996 805050300 805050609 1.300000e-129 473.0
34 TraesCS7A01G513600 chrUn 92.273 220 15 2 1 219 77509908 77510126 1.080000e-80 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G513600 chr7A 700286605 700290594 3989 False 7369.000000 7369 100.000000 1 3990 1 chr7A.!!$F1 3989
1 TraesCS7A01G513600 chr7A 38953786 38955048 1262 True 2206.000000 2206 98.179000 641 1903 1 chr7A.!!$R1 1262
2 TraesCS7A01G513600 chr7A 66688884 66691247 2363 True 1990.000000 3424 97.829500 641 3990 2 chr7A.!!$R3 3349
3 TraesCS7A01G513600 chr7A 700329464 700330075 611 False 830.000000 830 90.867000 1 641 1 chr7A.!!$F2 640
4 TraesCS7A01G513600 chr1A 586727984 586731317 3333 True 5906.000000 5906 98.567000 641 3990 1 chr1A.!!$R2 3349
5 TraesCS7A01G513600 chr1A 290214317 290216410 2093 True 652.133333 998 86.518333 1911 3990 3 chr1A.!!$R3 2079
6 TraesCS7A01G513600 chr4A 502361520 502364851 3331 True 5882.000000 5882 98.448000 641 3990 1 chr4A.!!$R1 3349
7 TraesCS7A01G513600 chr4A 90051383 90054714 3331 False 5766.000000 5766 97.821000 641 3990 1 chr4A.!!$F1 3349
8 TraesCS7A01G513600 chr4A 90065737 90071497 5760 False 3482.500000 5880 98.541500 637 3990 2 chr4A.!!$F2 3353
9 TraesCS7A01G513600 chr4B 532722200 532723965 1765 False 2880.000000 2880 96.321000 637 2379 1 chr4B.!!$F1 1742
10 TraesCS7A01G513600 chr4B 87816813 87818414 1601 False 431.375000 946 89.005750 1913 3990 4 chr4B.!!$F2 2077
11 TraesCS7A01G513600 chr7B 56997274 56998587 1313 True 2213.000000 2213 96.915000 1715 3043 1 chr7B.!!$R1 1328
12 TraesCS7A01G513600 chr4D 82855538 82856465 927 True 1637.000000 1637 98.493000 641 1569 1 chr4D.!!$R1 928
13 TraesCS7A01G513600 chr3D 253528416 253529863 1447 True 1162.000000 1184 95.896500 637 1969 2 chr3D.!!$R1 1332
14 TraesCS7A01G513600 chr2A 49923027 49923812 785 True 520.000000 520 79.009000 1906 2749 1 chr2A.!!$R1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.029567 CGTGACCGTCTGGCTAGATC 59.970 60.000 2.00 0.0 39.70 2.75 F
409 410 0.033109 GGGGTGAGGAAAGGGGATTG 60.033 60.000 0.00 0.0 0.00 2.67 F
639 640 0.034477 AAATACCCACCCCTCGCTTG 60.034 55.000 0.00 0.0 0.00 4.01 F
1897 2335 1.336795 TGCTGATCGCTCTTCGTTTCA 60.337 47.619 10.16 0.0 40.11 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2335 1.837439 TCCCCTGCTCAACGACATAAT 59.163 47.619 0.00 0.0 0.0 1.28 R
2359 2807 2.553172 ACTAGCCTCCTTATAACTCGCG 59.447 50.000 0.00 0.0 0.0 5.87 R
2487 2935 1.202915 TCTCCCAGCAATGCTCAAACA 60.203 47.619 4.03 0.0 36.4 2.83 R
3073 3581 5.069119 TGGTTATCTCGACTGCATTGACTAT 59.931 40.000 0.00 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.529865 GAGCGGTTGTTGAACTGGTAC 59.470 52.381 0.00 0.00 46.83 3.34
22 23 0.589708 GCGGTTGTTGAACTGGTACC 59.410 55.000 4.43 4.43 38.70 3.34
23 24 0.863144 CGGTTGTTGAACTGGTACCG 59.137 55.000 7.57 13.85 41.92 4.02
24 25 1.232119 GGTTGTTGAACTGGTACCGG 58.768 55.000 19.74 19.74 32.15 5.28
25 26 1.202675 GGTTGTTGAACTGGTACCGGA 60.203 52.381 27.93 1.56 32.15 5.14
26 27 2.140717 GTTGTTGAACTGGTACCGGAG 58.859 52.381 27.93 12.76 0.00 4.63
27 28 1.707106 TGTTGAACTGGTACCGGAGA 58.293 50.000 27.93 7.34 0.00 3.71
28 29 2.040939 TGTTGAACTGGTACCGGAGAA 58.959 47.619 27.93 12.87 0.00 2.87
29 30 2.036733 TGTTGAACTGGTACCGGAGAAG 59.963 50.000 27.93 11.20 0.00 2.85
30 31 0.606604 TGAACTGGTACCGGAGAAGC 59.393 55.000 27.93 11.11 0.00 3.86
31 32 0.108281 GAACTGGTACCGGAGAAGCC 60.108 60.000 27.93 2.81 0.00 4.35
68 69 3.775654 CTCCTCCCTGTCCGCCAC 61.776 72.222 0.00 0.00 0.00 5.01
71 72 3.691342 CTCCCTGTCCGCCACGAA 61.691 66.667 0.00 0.00 0.00 3.85
72 73 3.649277 CTCCCTGTCCGCCACGAAG 62.649 68.421 0.00 0.00 0.00 3.79
149 150 3.564218 GGAGGCGGGCTCCATCAT 61.564 66.667 37.30 0.93 40.57 2.45
150 151 2.031768 GAGGCGGGCTCCATCATC 59.968 66.667 19.99 0.00 0.00 2.92
151 152 3.543536 GAGGCGGGCTCCATCATCC 62.544 68.421 19.99 0.00 0.00 3.51
152 153 4.650377 GGCGGGCTCCATCATCCC 62.650 72.222 0.00 0.00 36.68 3.85
153 154 3.564218 GCGGGCTCCATCATCCCT 61.564 66.667 0.00 0.00 37.89 4.20
154 155 2.429058 CGGGCTCCATCATCCCTG 59.571 66.667 0.00 0.00 37.89 4.45
155 156 2.842058 GGGCTCCATCATCCCTGG 59.158 66.667 0.00 0.00 37.08 4.45
156 157 2.114838 GGCTCCATCATCCCTGGC 59.885 66.667 0.00 0.00 33.56 4.85
157 158 2.281345 GCTCCATCATCCCTGGCG 60.281 66.667 0.00 0.00 33.56 5.69
158 159 3.112205 GCTCCATCATCCCTGGCGT 62.112 63.158 0.00 0.00 33.56 5.68
159 160 1.227764 CTCCATCATCCCTGGCGTG 60.228 63.158 0.00 0.00 33.56 5.34
160 161 2.903855 CCATCATCCCTGGCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
161 162 2.903855 CATCATCCCTGGCGTGCC 60.904 66.667 3.30 3.30 0.00 5.01
162 163 4.552365 ATCATCCCTGGCGTGCCG 62.552 66.667 6.37 1.19 39.42 5.69
183 184 4.111016 CGCGTGACCGTCTGGCTA 62.111 66.667 0.00 0.00 39.70 3.93
184 185 2.202623 GCGTGACCGTCTGGCTAG 60.203 66.667 0.00 0.00 39.70 3.42
185 186 2.697761 GCGTGACCGTCTGGCTAGA 61.698 63.158 0.00 0.00 39.70 2.43
186 187 2.005960 GCGTGACCGTCTGGCTAGAT 62.006 60.000 2.00 0.00 39.70 1.98
187 188 0.029567 CGTGACCGTCTGGCTAGATC 59.970 60.000 2.00 0.00 39.70 2.75
188 189 0.029567 GTGACCGTCTGGCTAGATCG 59.970 60.000 2.00 8.88 39.70 3.69
189 190 1.101635 TGACCGTCTGGCTAGATCGG 61.102 60.000 27.09 27.09 45.16 4.18
190 191 1.797211 GACCGTCTGGCTAGATCGGG 61.797 65.000 29.76 21.71 44.56 5.14
191 192 1.528542 CCGTCTGGCTAGATCGGGA 60.529 63.158 23.67 0.00 40.63 5.14
192 193 1.519751 CCGTCTGGCTAGATCGGGAG 61.520 65.000 23.67 7.43 40.63 4.30
193 194 1.519751 CGTCTGGCTAGATCGGGAGG 61.520 65.000 2.00 0.00 34.94 4.30
194 195 1.153989 TCTGGCTAGATCGGGAGGG 59.846 63.158 0.00 0.00 0.00 4.30
195 196 1.910772 CTGGCTAGATCGGGAGGGG 60.911 68.421 0.00 0.00 0.00 4.79
196 197 2.604991 GGCTAGATCGGGAGGGGG 60.605 72.222 0.00 0.00 0.00 5.40
214 215 3.981212 GGGGGAGATGAAATTTTGGAGA 58.019 45.455 0.00 0.00 0.00 3.71
215 216 4.352893 GGGGGAGATGAAATTTTGGAGAA 58.647 43.478 0.00 0.00 0.00 2.87
216 217 4.403752 GGGGGAGATGAAATTTTGGAGAAG 59.596 45.833 0.00 0.00 0.00 2.85
217 218 5.264395 GGGGAGATGAAATTTTGGAGAAGA 58.736 41.667 0.00 0.00 0.00 2.87
218 219 5.359292 GGGGAGATGAAATTTTGGAGAAGAG 59.641 44.000 0.00 0.00 0.00 2.85
219 220 6.183347 GGGAGATGAAATTTTGGAGAAGAGA 58.817 40.000 0.00 0.00 0.00 3.10
220 221 6.318396 GGGAGATGAAATTTTGGAGAAGAGAG 59.682 42.308 0.00 0.00 0.00 3.20
221 222 6.883756 GGAGATGAAATTTTGGAGAAGAGAGT 59.116 38.462 0.00 0.00 0.00 3.24
222 223 7.392953 GGAGATGAAATTTTGGAGAAGAGAGTT 59.607 37.037 0.00 0.00 0.00 3.01
223 224 8.703378 AGATGAAATTTTGGAGAAGAGAGTTT 57.297 30.769 0.00 0.00 0.00 2.66
224 225 8.574737 AGATGAAATTTTGGAGAAGAGAGTTTG 58.425 33.333 0.00 0.00 0.00 2.93
225 226 7.042797 TGAAATTTTGGAGAAGAGAGTTTGG 57.957 36.000 0.00 0.00 0.00 3.28
226 227 5.459536 AATTTTGGAGAAGAGAGTTTGGC 57.540 39.130 0.00 0.00 0.00 4.52
227 228 2.169832 TTGGAGAAGAGAGTTTGGCG 57.830 50.000 0.00 0.00 0.00 5.69
228 229 0.321671 TGGAGAAGAGAGTTTGGCGG 59.678 55.000 0.00 0.00 0.00 6.13
229 230 1.021920 GGAGAAGAGAGTTTGGCGGC 61.022 60.000 0.00 0.00 0.00 6.53
230 231 1.355066 GAGAAGAGAGTTTGGCGGCG 61.355 60.000 0.51 0.51 0.00 6.46
231 232 1.668151 GAAGAGAGTTTGGCGGCGT 60.668 57.895 9.37 0.00 0.00 5.68
232 233 1.627550 GAAGAGAGTTTGGCGGCGTC 61.628 60.000 3.62 3.62 0.00 5.19
233 234 3.119096 GAGAGTTTGGCGGCGTCC 61.119 66.667 9.84 11.43 0.00 4.79
245 246 4.253257 GCGTCCGCCGGAGTAGAG 62.253 72.222 5.82 0.00 36.94 2.43
246 247 2.823147 CGTCCGCCGGAGTAGAGT 60.823 66.667 5.82 0.00 29.39 3.24
247 248 2.799371 GTCCGCCGGAGTAGAGTG 59.201 66.667 5.82 0.00 29.39 3.51
248 249 3.138798 TCCGCCGGAGTAGAGTGC 61.139 66.667 5.05 0.00 0.00 4.40
249 250 4.208686 CCGCCGGAGTAGAGTGCC 62.209 72.222 5.05 0.00 0.00 5.01
250 251 4.554363 CGCCGGAGTAGAGTGCCG 62.554 72.222 5.05 0.00 44.42 5.69
253 254 4.208686 CGGAGTAGAGTGCCGGGC 62.209 72.222 13.32 13.32 41.29 6.13
254 255 4.208686 GGAGTAGAGTGCCGGGCG 62.209 72.222 15.40 0.00 0.00 6.13
255 256 4.208686 GAGTAGAGTGCCGGGCGG 62.209 72.222 15.40 0.00 38.57 6.13
272 273 4.052229 GGCCTGTTGCTGCTGCTG 62.052 66.667 17.00 0.77 40.92 4.41
273 274 4.052229 GCCTGTTGCTGCTGCTGG 62.052 66.667 17.00 13.42 40.48 4.85
274 275 2.281970 CCTGTTGCTGCTGCTGGA 60.282 61.111 17.00 2.36 40.48 3.86
275 276 2.333417 CCTGTTGCTGCTGCTGGAG 61.333 63.158 17.00 7.79 40.48 3.86
276 277 1.302271 CTGTTGCTGCTGCTGGAGA 60.302 57.895 16.29 0.00 40.48 3.71
277 278 1.575576 CTGTTGCTGCTGCTGGAGAC 61.576 60.000 16.29 6.65 40.48 3.36
278 279 2.033141 TTGCTGCTGCTGGAGACC 59.967 61.111 16.29 0.00 40.48 3.85
279 280 3.889134 TTGCTGCTGCTGGAGACCG 62.889 63.158 16.29 0.00 40.48 4.79
281 282 4.463879 CTGCTGCTGGAGACCGGG 62.464 72.222 6.32 0.00 33.10 5.73
327 328 3.535962 GGAGGAGCAGCGGAGGAG 61.536 72.222 0.00 0.00 0.00 3.69
328 329 3.535962 GAGGAGCAGCGGAGGAGG 61.536 72.222 0.00 0.00 0.00 4.30
329 330 4.067512 AGGAGCAGCGGAGGAGGA 62.068 66.667 0.00 0.00 0.00 3.71
330 331 3.535962 GGAGCAGCGGAGGAGGAG 61.536 72.222 0.00 0.00 0.00 3.69
331 332 3.535962 GAGCAGCGGAGGAGGAGG 61.536 72.222 0.00 0.00 0.00 4.30
334 335 4.154347 CAGCGGAGGAGGAGGCAC 62.154 72.222 0.00 0.00 0.00 5.01
356 357 4.704833 GGAGGGAGCTGCGCACAA 62.705 66.667 5.66 0.00 0.00 3.33
357 358 3.123620 GAGGGAGCTGCGCACAAG 61.124 66.667 5.66 0.00 0.00 3.16
358 359 4.711949 AGGGAGCTGCGCACAAGG 62.712 66.667 5.66 0.00 0.00 3.61
360 361 4.704833 GGAGCTGCGCACAAGGGA 62.705 66.667 5.66 0.00 0.00 4.20
361 362 3.426568 GAGCTGCGCACAAGGGAC 61.427 66.667 5.66 0.00 0.00 4.46
384 385 4.699522 GCGGCGTGGAGGAAACCT 62.700 66.667 9.37 0.00 36.03 3.50
385 386 2.975536 CGGCGTGGAGGAAACCTA 59.024 61.111 0.00 0.00 31.76 3.08
386 387 1.153628 CGGCGTGGAGGAAACCTAG 60.154 63.158 0.00 0.00 31.76 3.02
387 388 1.449778 GGCGTGGAGGAAACCTAGC 60.450 63.158 0.00 0.00 31.76 3.42
388 389 1.810030 GCGTGGAGGAAACCTAGCG 60.810 63.158 0.00 0.00 31.76 4.26
389 390 1.888018 CGTGGAGGAAACCTAGCGA 59.112 57.895 0.00 0.00 31.76 4.93
390 391 0.179134 CGTGGAGGAAACCTAGCGAG 60.179 60.000 0.00 0.00 31.76 5.03
399 400 2.279073 CCTAGCGAGGGGTGAGGA 59.721 66.667 4.68 0.00 39.48 3.71
400 401 1.381327 CCTAGCGAGGGGTGAGGAA 60.381 63.158 4.68 0.00 39.48 3.36
401 402 0.976073 CCTAGCGAGGGGTGAGGAAA 60.976 60.000 4.68 0.00 39.48 3.13
402 403 0.461961 CTAGCGAGGGGTGAGGAAAG 59.538 60.000 0.00 0.00 0.00 2.62
403 404 0.976073 TAGCGAGGGGTGAGGAAAGG 60.976 60.000 0.00 0.00 0.00 3.11
404 405 2.990479 CGAGGGGTGAGGAAAGGG 59.010 66.667 0.00 0.00 0.00 3.95
405 406 2.670148 CGAGGGGTGAGGAAAGGGG 61.670 68.421 0.00 0.00 0.00 4.79
406 407 1.229853 GAGGGGTGAGGAAAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
407 408 0.624795 GAGGGGTGAGGAAAGGGGAT 60.625 60.000 0.00 0.00 0.00 3.85
408 409 0.178801 AGGGGTGAGGAAAGGGGATT 60.179 55.000 0.00 0.00 0.00 3.01
409 410 0.033109 GGGGTGAGGAAAGGGGATTG 60.033 60.000 0.00 0.00 0.00 2.67
410 411 0.033109 GGGTGAGGAAAGGGGATTGG 60.033 60.000 0.00 0.00 0.00 3.16
411 412 0.033109 GGTGAGGAAAGGGGATTGGG 60.033 60.000 0.00 0.00 0.00 4.12
412 413 0.684479 GTGAGGAAAGGGGATTGGGC 60.684 60.000 0.00 0.00 0.00 5.36
413 414 0.850883 TGAGGAAAGGGGATTGGGCT 60.851 55.000 0.00 0.00 0.00 5.19
414 415 0.396278 GAGGAAAGGGGATTGGGCTG 60.396 60.000 0.00 0.00 0.00 4.85
415 416 1.149133 AGGAAAGGGGATTGGGCTGT 61.149 55.000 0.00 0.00 0.00 4.40
416 417 0.252239 GGAAAGGGGATTGGGCTGTT 60.252 55.000 0.00 0.00 0.00 3.16
417 418 1.186200 GAAAGGGGATTGGGCTGTTC 58.814 55.000 0.00 0.00 0.00 3.18
418 419 0.611896 AAAGGGGATTGGGCTGTTCG 60.612 55.000 0.00 0.00 0.00 3.95
419 420 3.140814 GGGGATTGGGCTGTTCGC 61.141 66.667 0.00 0.00 38.13 4.70
430 431 2.997485 GCTGTTCGCCTGAAATTCTT 57.003 45.000 0.00 0.00 35.46 2.52
431 432 3.288809 GCTGTTCGCCTGAAATTCTTT 57.711 42.857 0.00 0.00 35.46 2.52
432 433 3.642705 GCTGTTCGCCTGAAATTCTTTT 58.357 40.909 0.00 0.00 35.46 2.27
433 434 3.426525 GCTGTTCGCCTGAAATTCTTTTG 59.573 43.478 0.00 0.00 35.46 2.44
434 435 3.380142 TGTTCGCCTGAAATTCTTTTGC 58.620 40.909 0.00 0.00 35.46 3.68
435 436 2.330231 TCGCCTGAAATTCTTTTGCG 57.670 45.000 10.80 10.80 37.04 4.85
436 437 0.710017 CGCCTGAAATTCTTTTGCGC 59.290 50.000 0.00 0.00 32.07 6.09
437 438 0.710017 GCCTGAAATTCTTTTGCGCG 59.290 50.000 0.00 0.00 0.00 6.86
438 439 1.930371 GCCTGAAATTCTTTTGCGCGT 60.930 47.619 8.43 0.00 0.00 6.01
439 440 1.715519 CCTGAAATTCTTTTGCGCGTG 59.284 47.619 8.43 0.00 0.00 5.34
440 441 1.715519 CTGAAATTCTTTTGCGCGTGG 59.284 47.619 8.43 0.00 0.00 4.94
441 442 1.059942 GAAATTCTTTTGCGCGTGGG 58.940 50.000 8.43 0.00 0.00 4.61
442 443 0.943835 AAATTCTTTTGCGCGTGGGC 60.944 50.000 8.43 1.46 0.00 5.36
460 461 4.096003 GTTGCGGGCCTGCCTCTA 62.096 66.667 33.49 12.63 36.10 2.43
461 462 3.089874 TTGCGGGCCTGCCTCTAT 61.090 61.111 33.49 0.00 36.10 1.98
462 463 1.764454 TTGCGGGCCTGCCTCTATA 60.764 57.895 33.49 11.36 36.10 1.31
463 464 1.341913 TTGCGGGCCTGCCTCTATAA 61.342 55.000 33.49 17.15 36.10 0.98
464 465 1.341913 TGCGGGCCTGCCTCTATAAA 61.342 55.000 33.49 9.69 36.10 1.40
465 466 0.179029 GCGGGCCTGCCTCTATAAAA 60.179 55.000 27.24 0.00 36.10 1.52
466 467 1.749286 GCGGGCCTGCCTCTATAAAAA 60.749 52.381 27.24 0.00 36.10 1.94
467 468 1.947456 CGGGCCTGCCTCTATAAAAAC 59.053 52.381 8.29 0.00 36.10 2.43
468 469 2.682563 CGGGCCTGCCTCTATAAAAACA 60.683 50.000 8.29 0.00 36.10 2.83
469 470 2.688446 GGGCCTGCCTCTATAAAAACAC 59.312 50.000 8.29 0.00 36.10 3.32
470 471 2.354821 GGCCTGCCTCTATAAAAACACG 59.645 50.000 0.00 0.00 0.00 4.49
471 472 3.267483 GCCTGCCTCTATAAAAACACGA 58.733 45.455 0.00 0.00 0.00 4.35
472 473 3.687698 GCCTGCCTCTATAAAAACACGAA 59.312 43.478 0.00 0.00 0.00 3.85
473 474 4.155280 GCCTGCCTCTATAAAAACACGAAA 59.845 41.667 0.00 0.00 0.00 3.46
474 475 5.673818 GCCTGCCTCTATAAAAACACGAAAG 60.674 44.000 0.00 0.00 0.00 2.62
475 476 5.163754 CCTGCCTCTATAAAAACACGAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
476 477 4.155280 TGCCTCTATAAAAACACGAAAGGC 59.845 41.667 0.00 0.00 45.46 4.35
478 479 4.201783 CCTCTATAAAAACACGAAAGGCGG 60.202 45.833 0.00 0.00 46.49 6.13
479 480 4.567971 TCTATAAAAACACGAAAGGCGGA 58.432 39.130 0.00 0.00 46.49 5.54
480 481 3.824414 ATAAAAACACGAAAGGCGGAG 57.176 42.857 0.00 0.00 46.49 4.63
481 482 1.670791 AAAAACACGAAAGGCGGAGA 58.329 45.000 0.00 0.00 46.49 3.71
482 483 1.670791 AAAACACGAAAGGCGGAGAA 58.329 45.000 0.00 0.00 46.49 2.87
483 484 0.942252 AAACACGAAAGGCGGAGAAC 59.058 50.000 0.00 0.00 46.49 3.01
484 485 0.883370 AACACGAAAGGCGGAGAACC 60.883 55.000 0.00 0.00 46.49 3.62
485 486 1.301401 CACGAAAGGCGGAGAACCA 60.301 57.895 0.00 0.00 46.49 3.67
486 487 1.301479 ACGAAAGGCGGAGAACCAC 60.301 57.895 0.00 0.00 46.49 4.16
487 488 1.301401 CGAAAGGCGGAGAACCACA 60.301 57.895 0.00 0.00 36.03 4.17
488 489 1.566018 CGAAAGGCGGAGAACCACAC 61.566 60.000 0.00 0.00 36.03 3.82
489 490 0.534203 GAAAGGCGGAGAACCACACA 60.534 55.000 0.00 0.00 35.59 3.72
490 491 0.106918 AAAGGCGGAGAACCACACAA 60.107 50.000 0.00 0.00 35.59 3.33
491 492 0.110486 AAGGCGGAGAACCACACAAT 59.890 50.000 0.00 0.00 35.59 2.71
492 493 0.321653 AGGCGGAGAACCACACAATC 60.322 55.000 0.00 0.00 35.59 2.67
493 494 0.321653 GGCGGAGAACCACACAATCT 60.322 55.000 0.00 0.00 35.59 2.40
494 495 1.079503 GCGGAGAACCACACAATCTC 58.920 55.000 0.00 0.00 39.06 2.75
495 496 1.608025 GCGGAGAACCACACAATCTCA 60.608 52.381 4.61 0.00 41.06 3.27
496 497 2.936993 GCGGAGAACCACACAATCTCAT 60.937 50.000 4.61 0.00 41.06 2.90
497 498 2.932614 CGGAGAACCACACAATCTCATC 59.067 50.000 4.61 0.00 41.06 2.92
498 499 3.274288 GGAGAACCACACAATCTCATCC 58.726 50.000 4.61 0.00 41.06 3.51
499 500 3.307691 GGAGAACCACACAATCTCATCCA 60.308 47.826 4.61 0.00 41.06 3.41
500 501 4.521146 GAGAACCACACAATCTCATCCAT 58.479 43.478 0.00 0.00 39.48 3.41
501 502 4.521146 AGAACCACACAATCTCATCCATC 58.479 43.478 0.00 0.00 0.00 3.51
502 503 3.287867 ACCACACAATCTCATCCATCC 57.712 47.619 0.00 0.00 0.00 3.51
503 504 2.577563 ACCACACAATCTCATCCATCCA 59.422 45.455 0.00 0.00 0.00 3.41
504 505 3.211865 CCACACAATCTCATCCATCCAG 58.788 50.000 0.00 0.00 0.00 3.86
505 506 3.118149 CCACACAATCTCATCCATCCAGA 60.118 47.826 0.00 0.00 0.00 3.86
506 507 4.520179 CACACAATCTCATCCATCCAGAA 58.480 43.478 0.00 0.00 0.00 3.02
507 508 4.945543 CACACAATCTCATCCATCCAGAAA 59.054 41.667 0.00 0.00 0.00 2.52
508 509 5.416639 CACACAATCTCATCCATCCAGAAAA 59.583 40.000 0.00 0.00 0.00 2.29
509 510 6.096423 CACACAATCTCATCCATCCAGAAAAT 59.904 38.462 0.00 0.00 0.00 1.82
510 511 6.666546 ACACAATCTCATCCATCCAGAAAATT 59.333 34.615 0.00 0.00 0.00 1.82
511 512 6.978659 CACAATCTCATCCATCCAGAAAATTG 59.021 38.462 0.00 0.00 0.00 2.32
512 513 6.893554 ACAATCTCATCCATCCAGAAAATTGA 59.106 34.615 0.00 0.00 0.00 2.57
513 514 7.398047 ACAATCTCATCCATCCAGAAAATTGAA 59.602 33.333 0.00 0.00 0.00 2.69
514 515 8.421784 CAATCTCATCCATCCAGAAAATTGAAT 58.578 33.333 0.00 0.00 0.00 2.57
515 516 7.578310 TCTCATCCATCCAGAAAATTGAATC 57.422 36.000 0.00 0.00 0.00 2.52
516 517 6.548622 TCTCATCCATCCAGAAAATTGAATCC 59.451 38.462 0.00 0.00 0.00 3.01
517 518 6.437755 TCATCCATCCAGAAAATTGAATCCT 58.562 36.000 0.00 0.00 0.00 3.24
518 519 7.585440 TCATCCATCCAGAAAATTGAATCCTA 58.415 34.615 0.00 0.00 0.00 2.94
519 520 7.503566 TCATCCATCCAGAAAATTGAATCCTAC 59.496 37.037 0.00 0.00 0.00 3.18
520 521 5.822519 TCCATCCAGAAAATTGAATCCTACG 59.177 40.000 0.00 0.00 0.00 3.51
521 522 5.590259 CCATCCAGAAAATTGAATCCTACGT 59.410 40.000 0.00 0.00 0.00 3.57
522 523 6.095440 CCATCCAGAAAATTGAATCCTACGTT 59.905 38.462 0.00 0.00 0.00 3.99
523 524 7.362920 CCATCCAGAAAATTGAATCCTACGTTT 60.363 37.037 0.00 0.00 0.00 3.60
524 525 7.141100 TCCAGAAAATTGAATCCTACGTTTC 57.859 36.000 0.00 0.00 0.00 2.78
525 526 6.712998 TCCAGAAAATTGAATCCTACGTTTCA 59.287 34.615 0.00 0.00 0.00 2.69
526 527 6.801862 CCAGAAAATTGAATCCTACGTTTCAC 59.198 38.462 0.00 0.00 31.87 3.18
527 528 7.359595 CAGAAAATTGAATCCTACGTTTCACA 58.640 34.615 0.00 0.00 31.87 3.58
528 529 8.023128 CAGAAAATTGAATCCTACGTTTCACAT 58.977 33.333 0.00 0.00 31.87 3.21
529 530 8.023128 AGAAAATTGAATCCTACGTTTCACATG 58.977 33.333 0.00 0.00 31.87 3.21
530 531 4.678509 TTGAATCCTACGTTTCACATGC 57.321 40.909 0.00 0.00 31.87 4.06
531 532 3.006940 TGAATCCTACGTTTCACATGCC 58.993 45.455 0.00 0.00 0.00 4.40
532 533 3.270877 GAATCCTACGTTTCACATGCCT 58.729 45.455 0.00 0.00 0.00 4.75
533 534 2.851263 TCCTACGTTTCACATGCCTT 57.149 45.000 0.00 0.00 0.00 4.35
534 535 2.422597 TCCTACGTTTCACATGCCTTG 58.577 47.619 0.00 0.00 0.00 3.61
535 536 1.468520 CCTACGTTTCACATGCCTTGG 59.531 52.381 0.00 0.00 0.00 3.61
536 537 2.422597 CTACGTTTCACATGCCTTGGA 58.577 47.619 0.00 0.00 0.00 3.53
537 538 1.909700 ACGTTTCACATGCCTTGGAT 58.090 45.000 0.00 0.00 0.00 3.41
538 539 1.541147 ACGTTTCACATGCCTTGGATG 59.459 47.619 0.00 0.00 37.40 3.51
539 540 1.541147 CGTTTCACATGCCTTGGATGT 59.459 47.619 0.00 0.00 45.01 3.06
540 541 2.030007 CGTTTCACATGCCTTGGATGTT 60.030 45.455 0.00 0.00 41.61 2.71
541 542 3.552684 CGTTTCACATGCCTTGGATGTTT 60.553 43.478 0.00 0.00 41.61 2.83
542 543 4.320861 CGTTTCACATGCCTTGGATGTTTA 60.321 41.667 0.00 0.00 41.61 2.01
543 544 5.163513 GTTTCACATGCCTTGGATGTTTAG 58.836 41.667 0.00 0.00 41.61 1.85
544 545 2.754552 TCACATGCCTTGGATGTTTAGC 59.245 45.455 0.00 0.00 41.61 3.09
545 546 2.492881 CACATGCCTTGGATGTTTAGCA 59.507 45.455 0.00 0.00 41.61 3.49
546 547 2.493278 ACATGCCTTGGATGTTTAGCAC 59.507 45.455 0.00 0.00 41.61 4.40
547 548 1.544724 TGCCTTGGATGTTTAGCACC 58.455 50.000 0.00 0.00 0.00 5.01
548 549 1.202989 TGCCTTGGATGTTTAGCACCA 60.203 47.619 0.00 0.00 0.00 4.17
549 550 1.892474 GCCTTGGATGTTTAGCACCAA 59.108 47.619 0.00 0.00 36.57 3.67
550 551 2.497273 GCCTTGGATGTTTAGCACCAAT 59.503 45.455 0.00 0.00 37.51 3.16
551 552 3.429410 GCCTTGGATGTTTAGCACCAATC 60.429 47.826 0.00 0.00 37.51 2.67
552 553 3.763360 CCTTGGATGTTTAGCACCAATCA 59.237 43.478 0.00 0.00 37.51 2.57
553 554 4.403432 CCTTGGATGTTTAGCACCAATCAT 59.597 41.667 0.00 0.00 37.51 2.45
554 555 4.987408 TGGATGTTTAGCACCAATCATG 57.013 40.909 0.00 0.00 0.00 3.07
555 556 4.343231 TGGATGTTTAGCACCAATCATGT 58.657 39.130 0.00 0.00 0.00 3.21
556 557 4.771577 TGGATGTTTAGCACCAATCATGTT 59.228 37.500 0.00 0.00 0.00 2.71
557 558 5.245751 TGGATGTTTAGCACCAATCATGTTT 59.754 36.000 0.00 0.00 0.00 2.83
558 559 6.165577 GGATGTTTAGCACCAATCATGTTTT 58.834 36.000 0.00 0.00 0.00 2.43
559 560 7.039434 TGGATGTTTAGCACCAATCATGTTTTA 60.039 33.333 0.00 0.00 0.00 1.52
560 561 7.275560 GGATGTTTAGCACCAATCATGTTTTAC 59.724 37.037 0.00 0.00 0.00 2.01
561 562 6.451393 TGTTTAGCACCAATCATGTTTTACC 58.549 36.000 0.00 0.00 0.00 2.85
562 563 5.652994 TTAGCACCAATCATGTTTTACCC 57.347 39.130 0.00 0.00 0.00 3.69
563 564 3.505386 AGCACCAATCATGTTTTACCCA 58.495 40.909 0.00 0.00 0.00 4.51
564 565 3.258123 AGCACCAATCATGTTTTACCCAC 59.742 43.478 0.00 0.00 0.00 4.61
565 566 3.258123 GCACCAATCATGTTTTACCCACT 59.742 43.478 0.00 0.00 0.00 4.00
566 567 4.618227 GCACCAATCATGTTTTACCCACTC 60.618 45.833 0.00 0.00 0.00 3.51
567 568 4.766891 CACCAATCATGTTTTACCCACTCT 59.233 41.667 0.00 0.00 0.00 3.24
568 569 5.243730 CACCAATCATGTTTTACCCACTCTT 59.756 40.000 0.00 0.00 0.00 2.85
569 570 6.432783 CACCAATCATGTTTTACCCACTCTTA 59.567 38.462 0.00 0.00 0.00 2.10
570 571 7.007723 ACCAATCATGTTTTACCCACTCTTAA 58.992 34.615 0.00 0.00 0.00 1.85
571 572 7.673926 ACCAATCATGTTTTACCCACTCTTAAT 59.326 33.333 0.00 0.00 0.00 1.40
572 573 8.531146 CCAATCATGTTTTACCCACTCTTAATT 58.469 33.333 0.00 0.00 0.00 1.40
575 576 8.276252 TCATGTTTTACCCACTCTTAATTAGC 57.724 34.615 0.00 0.00 0.00 3.09
576 577 6.730960 TGTTTTACCCACTCTTAATTAGCG 57.269 37.500 0.00 0.00 0.00 4.26
577 578 5.122711 TGTTTTACCCACTCTTAATTAGCGC 59.877 40.000 0.00 0.00 0.00 5.92
578 579 4.748277 TTACCCACTCTTAATTAGCGCT 57.252 40.909 17.26 17.26 0.00 5.92
579 580 2.906354 ACCCACTCTTAATTAGCGCTG 58.094 47.619 22.90 1.06 0.00 5.18
580 581 2.213499 CCCACTCTTAATTAGCGCTGG 58.787 52.381 22.90 9.25 0.00 4.85
581 582 1.599542 CCACTCTTAATTAGCGCTGGC 59.400 52.381 22.90 0.00 40.37 4.85
582 583 1.258982 CACTCTTAATTAGCGCTGGCG 59.741 52.381 22.90 10.80 46.35 5.69
621 622 4.360405 GCCCCGCCCCTCAAGAAA 62.360 66.667 0.00 0.00 0.00 2.52
622 623 2.438795 CCCCGCCCCTCAAGAAAA 59.561 61.111 0.00 0.00 0.00 2.29
623 624 1.000359 CCCCGCCCCTCAAGAAAAT 60.000 57.895 0.00 0.00 0.00 1.82
624 625 0.257616 CCCCGCCCCTCAAGAAAATA 59.742 55.000 0.00 0.00 0.00 1.40
625 626 1.389555 CCCGCCCCTCAAGAAAATAC 58.610 55.000 0.00 0.00 0.00 1.89
626 627 1.389555 CCGCCCCTCAAGAAAATACC 58.610 55.000 0.00 0.00 0.00 2.73
627 628 1.389555 CGCCCCTCAAGAAAATACCC 58.610 55.000 0.00 0.00 0.00 3.69
628 629 1.340600 CGCCCCTCAAGAAAATACCCA 60.341 52.381 0.00 0.00 0.00 4.51
629 630 2.100197 GCCCCTCAAGAAAATACCCAC 58.900 52.381 0.00 0.00 0.00 4.61
630 631 2.735151 CCCCTCAAGAAAATACCCACC 58.265 52.381 0.00 0.00 0.00 4.61
631 632 2.623239 CCCCTCAAGAAAATACCCACCC 60.623 54.545 0.00 0.00 0.00 4.61
632 633 2.623239 CCCTCAAGAAAATACCCACCCC 60.623 54.545 0.00 0.00 0.00 4.95
633 634 2.311841 CCTCAAGAAAATACCCACCCCT 59.688 50.000 0.00 0.00 0.00 4.79
634 635 3.621558 CTCAAGAAAATACCCACCCCTC 58.378 50.000 0.00 0.00 0.00 4.30
635 636 2.026636 TCAAGAAAATACCCACCCCTCG 60.027 50.000 0.00 0.00 0.00 4.63
636 637 0.255033 AGAAAATACCCACCCCTCGC 59.745 55.000 0.00 0.00 0.00 5.03
637 638 0.255033 GAAAATACCCACCCCTCGCT 59.745 55.000 0.00 0.00 0.00 4.93
638 639 0.702316 AAAATACCCACCCCTCGCTT 59.298 50.000 0.00 0.00 0.00 4.68
639 640 0.034477 AAATACCCACCCCTCGCTTG 60.034 55.000 0.00 0.00 0.00 4.01
708 709 2.421424 GTCAGCCAAATCACATCTGGAC 59.579 50.000 0.00 0.00 31.38 4.02
1580 2018 3.508402 TCTTTGATGTACAGGAGCACGTA 59.492 43.478 0.33 0.00 0.00 3.57
1897 2335 1.336795 TGCTGATCGCTCTTCGTTTCA 60.337 47.619 10.16 0.00 40.11 2.69
2359 2807 1.965935 AAAGGGTTGCATGGTTTTGC 58.034 45.000 0.00 0.00 43.07 3.68
2481 2929 2.852449 TGGTCCGTTTATGTTTGAGCA 58.148 42.857 0.00 0.00 0.00 4.26
2482 2930 3.417101 TGGTCCGTTTATGTTTGAGCAT 58.583 40.909 0.00 0.00 0.00 3.79
2483 2931 3.823873 TGGTCCGTTTATGTTTGAGCATT 59.176 39.130 0.00 0.00 0.00 3.56
2484 2932 4.165779 GGTCCGTTTATGTTTGAGCATTG 58.834 43.478 0.00 0.00 0.00 2.82
2485 2933 3.608073 GTCCGTTTATGTTTGAGCATTGC 59.392 43.478 0.00 0.00 0.00 3.56
2486 2934 3.505680 TCCGTTTATGTTTGAGCATTGCT 59.494 39.130 11.79 11.79 43.88 3.91
2487 2935 4.022416 TCCGTTTATGTTTGAGCATTGCTT 60.022 37.500 13.35 0.00 39.88 3.91
2488 2936 4.090354 CCGTTTATGTTTGAGCATTGCTTG 59.910 41.667 13.35 0.00 39.88 4.01
2489 2937 4.681025 CGTTTATGTTTGAGCATTGCTTGT 59.319 37.500 13.35 0.00 39.88 3.16
2490 2938 5.175491 CGTTTATGTTTGAGCATTGCTTGTT 59.825 36.000 13.35 0.00 39.88 2.83
2491 2939 6.292274 CGTTTATGTTTGAGCATTGCTTGTTT 60.292 34.615 13.35 0.00 39.88 2.83
2492 2940 6.528014 TTATGTTTGAGCATTGCTTGTTTG 57.472 33.333 13.35 0.00 39.88 2.93
2493 2941 4.120792 TGTTTGAGCATTGCTTGTTTGA 57.879 36.364 13.35 0.00 39.88 2.69
2494 2942 4.114073 TGTTTGAGCATTGCTTGTTTGAG 58.886 39.130 13.35 0.00 39.88 3.02
2495 2943 2.427232 TGAGCATTGCTTGTTTGAGC 57.573 45.000 13.35 0.00 39.88 4.26
2536 2985 1.211709 GGAACCAAAATGGGACGCG 59.788 57.895 3.53 3.53 43.37 6.01
2556 3005 2.864343 CGTATTTGGAACGCCTAGAAGG 59.136 50.000 0.00 0.00 38.80 3.46
3073 3581 8.692710 CAATGGTCCAGTACTCTAGTTACATTA 58.307 37.037 0.00 0.00 0.00 1.90
3088 3596 7.700322 AGTTACATTATAGTCAATGCAGTCG 57.300 36.000 0.00 0.00 39.13 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.775654 GTGGCGGACAGGGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
54 55 3.649277 CTTCGTGGCGGACAGGGAG 62.649 68.421 3.37 0.00 34.50 4.30
55 56 3.691342 CTTCGTGGCGGACAGGGA 61.691 66.667 3.37 0.00 35.71 4.20
133 134 2.031768 GATGATGGAGCCCGCCTC 59.968 66.667 0.00 0.00 39.98 4.70
134 135 3.564218 GGATGATGGAGCCCGCCT 61.564 66.667 0.00 0.00 0.00 5.52
135 136 4.650377 GGGATGATGGAGCCCGCC 62.650 72.222 0.00 0.00 41.72 6.13
139 140 2.114838 GCCAGGGATGATGGAGCC 59.885 66.667 0.00 0.00 40.51 4.70
140 141 2.281345 CGCCAGGGATGATGGAGC 60.281 66.667 0.00 0.00 40.51 4.70
141 142 1.227764 CACGCCAGGGATGATGGAG 60.228 63.158 0.00 0.00 42.68 3.86
142 143 2.910360 CACGCCAGGGATGATGGA 59.090 61.111 0.00 0.00 40.51 3.41
143 144 2.903855 GCACGCCAGGGATGATGG 60.904 66.667 0.00 0.00 41.04 3.51
144 145 2.903855 GGCACGCCAGGGATGATG 60.904 66.667 2.36 0.00 35.81 3.07
166 167 4.111016 TAGCCAGACGGTCACGCG 62.111 66.667 11.27 3.53 46.04 6.01
167 168 2.005960 ATCTAGCCAGACGGTCACGC 62.006 60.000 11.27 10.80 46.04 5.34
169 170 0.029567 CGATCTAGCCAGACGGTCAC 59.970 60.000 11.27 0.00 32.25 3.67
170 171 1.101635 CCGATCTAGCCAGACGGTCA 61.102 60.000 11.27 0.00 39.04 4.02
171 172 1.655329 CCGATCTAGCCAGACGGTC 59.345 63.158 12.48 0.00 39.04 4.79
172 173 1.828660 CCCGATCTAGCCAGACGGT 60.829 63.158 16.90 0.00 40.69 4.83
173 174 1.519751 CTCCCGATCTAGCCAGACGG 61.520 65.000 13.33 13.33 41.34 4.79
174 175 1.519751 CCTCCCGATCTAGCCAGACG 61.520 65.000 0.00 0.00 32.25 4.18
175 176 1.182385 CCCTCCCGATCTAGCCAGAC 61.182 65.000 0.00 0.00 32.25 3.51
176 177 1.153989 CCCTCCCGATCTAGCCAGA 59.846 63.158 0.00 0.00 34.56 3.86
177 178 1.910772 CCCCTCCCGATCTAGCCAG 60.911 68.421 0.00 0.00 0.00 4.85
178 179 2.201490 CCCCTCCCGATCTAGCCA 59.799 66.667 0.00 0.00 0.00 4.75
179 180 2.604991 CCCCCTCCCGATCTAGCC 60.605 72.222 0.00 0.00 0.00 3.93
193 194 3.981212 TCTCCAAAATTTCATCTCCCCC 58.019 45.455 0.00 0.00 0.00 5.40
194 195 5.264395 TCTTCTCCAAAATTTCATCTCCCC 58.736 41.667 0.00 0.00 0.00 4.81
195 196 6.183347 TCTCTTCTCCAAAATTTCATCTCCC 58.817 40.000 0.00 0.00 0.00 4.30
196 197 6.883756 ACTCTCTTCTCCAAAATTTCATCTCC 59.116 38.462 0.00 0.00 0.00 3.71
197 198 7.920160 ACTCTCTTCTCCAAAATTTCATCTC 57.080 36.000 0.00 0.00 0.00 2.75
198 199 8.574737 CAAACTCTCTTCTCCAAAATTTCATCT 58.425 33.333 0.00 0.00 0.00 2.90
199 200 7.811713 CCAAACTCTCTTCTCCAAAATTTCATC 59.188 37.037 0.00 0.00 0.00 2.92
200 201 7.664758 CCAAACTCTCTTCTCCAAAATTTCAT 58.335 34.615 0.00 0.00 0.00 2.57
201 202 6.461509 GCCAAACTCTCTTCTCCAAAATTTCA 60.462 38.462 0.00 0.00 0.00 2.69
202 203 5.923114 GCCAAACTCTCTTCTCCAAAATTTC 59.077 40.000 0.00 0.00 0.00 2.17
203 204 5.507985 CGCCAAACTCTCTTCTCCAAAATTT 60.508 40.000 0.00 0.00 0.00 1.82
204 205 4.022849 CGCCAAACTCTCTTCTCCAAAATT 60.023 41.667 0.00 0.00 0.00 1.82
205 206 3.503748 CGCCAAACTCTCTTCTCCAAAAT 59.496 43.478 0.00 0.00 0.00 1.82
206 207 2.878406 CGCCAAACTCTCTTCTCCAAAA 59.122 45.455 0.00 0.00 0.00 2.44
207 208 2.494059 CGCCAAACTCTCTTCTCCAAA 58.506 47.619 0.00 0.00 0.00 3.28
208 209 1.270839 CCGCCAAACTCTCTTCTCCAA 60.271 52.381 0.00 0.00 0.00 3.53
209 210 0.321671 CCGCCAAACTCTCTTCTCCA 59.678 55.000 0.00 0.00 0.00 3.86
210 211 1.021920 GCCGCCAAACTCTCTTCTCC 61.022 60.000 0.00 0.00 0.00 3.71
211 212 1.355066 CGCCGCCAAACTCTCTTCTC 61.355 60.000 0.00 0.00 0.00 2.87
212 213 1.374758 CGCCGCCAAACTCTCTTCT 60.375 57.895 0.00 0.00 0.00 2.85
213 214 1.627550 GACGCCGCCAAACTCTCTTC 61.628 60.000 0.00 0.00 0.00 2.87
214 215 1.668151 GACGCCGCCAAACTCTCTT 60.668 57.895 0.00 0.00 0.00 2.85
215 216 2.048127 GACGCCGCCAAACTCTCT 60.048 61.111 0.00 0.00 0.00 3.10
216 217 3.119096 GGACGCCGCCAAACTCTC 61.119 66.667 0.00 0.00 0.00 3.20
228 229 4.253257 CTCTACTCCGGCGGACGC 62.253 72.222 27.46 8.39 42.52 5.19
229 230 2.823147 ACTCTACTCCGGCGGACG 60.823 66.667 27.46 22.48 43.80 4.79
230 231 2.799371 CACTCTACTCCGGCGGAC 59.201 66.667 27.46 0.00 0.00 4.79
231 232 3.138798 GCACTCTACTCCGGCGGA 61.139 66.667 29.14 29.14 0.00 5.54
232 233 4.208686 GGCACTCTACTCCGGCGG 62.209 72.222 22.51 22.51 0.00 6.13
233 234 4.554363 CGGCACTCTACTCCGGCG 62.554 72.222 0.00 0.00 39.52 6.46
236 237 4.208686 GCCCGGCACTCTACTCCG 62.209 72.222 3.91 0.00 42.58 4.63
237 238 4.208686 CGCCCGGCACTCTACTCC 62.209 72.222 10.77 0.00 0.00 3.85
238 239 4.208686 CCGCCCGGCACTCTACTC 62.209 72.222 10.77 0.00 0.00 2.59
255 256 4.052229 CAGCAGCAGCAACAGGCC 62.052 66.667 3.17 0.00 46.50 5.19
256 257 4.052229 CCAGCAGCAGCAACAGGC 62.052 66.667 3.17 0.00 45.49 4.85
257 258 2.281970 TCCAGCAGCAGCAACAGG 60.282 61.111 3.17 0.00 45.49 4.00
258 259 1.302271 TCTCCAGCAGCAGCAACAG 60.302 57.895 3.17 0.00 45.49 3.16
259 260 1.598962 GTCTCCAGCAGCAGCAACA 60.599 57.895 3.17 0.00 45.49 3.33
260 261 2.331132 GGTCTCCAGCAGCAGCAAC 61.331 63.158 3.17 0.00 45.49 4.17
261 262 2.033141 GGTCTCCAGCAGCAGCAA 59.967 61.111 3.17 0.00 45.49 3.91
262 263 4.383861 CGGTCTCCAGCAGCAGCA 62.384 66.667 3.17 0.00 45.49 4.41
264 265 4.463879 CCCGGTCTCCAGCAGCAG 62.464 72.222 0.00 0.00 0.00 4.24
298 299 3.934391 CTCCTCCCGTTGCCGTGAC 62.934 68.421 0.00 0.00 0.00 3.67
299 300 3.691342 CTCCTCCCGTTGCCGTGA 61.691 66.667 0.00 0.00 0.00 4.35
310 311 3.535962 CTCCTCCGCTGCTCCTCC 61.536 72.222 0.00 0.00 0.00 4.30
311 312 3.535962 CCTCCTCCGCTGCTCCTC 61.536 72.222 0.00 0.00 0.00 3.71
312 313 4.067512 TCCTCCTCCGCTGCTCCT 62.068 66.667 0.00 0.00 0.00 3.69
313 314 3.535962 CTCCTCCTCCGCTGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
314 315 3.535962 CCTCCTCCTCCGCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
317 318 4.154347 GTGCCTCCTCCTCCGCTG 62.154 72.222 0.00 0.00 0.00 5.18
367 368 3.305177 TAGGTTTCCTCCACGCCGC 62.305 63.158 0.00 0.00 34.61 6.53
368 369 1.153628 CTAGGTTTCCTCCACGCCG 60.154 63.158 0.00 0.00 34.61 6.46
369 370 1.449778 GCTAGGTTTCCTCCACGCC 60.450 63.158 0.00 0.00 34.61 5.68
370 371 1.810030 CGCTAGGTTTCCTCCACGC 60.810 63.158 0.00 0.00 34.61 5.34
371 372 0.179134 CTCGCTAGGTTTCCTCCACG 60.179 60.000 0.00 0.00 34.61 4.94
372 373 0.175989 CCTCGCTAGGTTTCCTCCAC 59.824 60.000 0.00 0.00 38.19 4.02
373 374 0.976073 CCCTCGCTAGGTTTCCTCCA 60.976 60.000 3.23 0.00 41.89 3.86
374 375 1.687297 CCCCTCGCTAGGTTTCCTCC 61.687 65.000 3.23 0.00 41.89 4.30
375 376 0.976590 ACCCCTCGCTAGGTTTCCTC 60.977 60.000 3.23 0.00 41.89 3.71
376 377 1.080538 ACCCCTCGCTAGGTTTCCT 59.919 57.895 3.23 0.00 41.89 3.36
377 378 1.221021 CACCCCTCGCTAGGTTTCC 59.779 63.158 3.23 0.00 41.89 3.13
378 379 0.175989 CTCACCCCTCGCTAGGTTTC 59.824 60.000 3.23 0.00 41.89 2.78
379 380 1.265454 CCTCACCCCTCGCTAGGTTT 61.265 60.000 3.23 0.00 41.89 3.27
380 381 1.686110 CCTCACCCCTCGCTAGGTT 60.686 63.158 3.23 0.00 41.89 3.50
381 382 2.042843 CCTCACCCCTCGCTAGGT 60.043 66.667 3.23 0.00 41.89 3.08
382 383 0.976073 TTTCCTCACCCCTCGCTAGG 60.976 60.000 0.00 0.00 43.25 3.02
383 384 0.461961 CTTTCCTCACCCCTCGCTAG 59.538 60.000 0.00 0.00 0.00 3.42
384 385 0.976073 CCTTTCCTCACCCCTCGCTA 60.976 60.000 0.00 0.00 0.00 4.26
385 386 2.294078 CCTTTCCTCACCCCTCGCT 61.294 63.158 0.00 0.00 0.00 4.93
386 387 2.269241 CCTTTCCTCACCCCTCGC 59.731 66.667 0.00 0.00 0.00 5.03
387 388 2.670148 CCCCTTTCCTCACCCCTCG 61.670 68.421 0.00 0.00 0.00 4.63
388 389 0.624795 ATCCCCTTTCCTCACCCCTC 60.625 60.000 0.00 0.00 0.00 4.30
389 390 0.178801 AATCCCCTTTCCTCACCCCT 60.179 55.000 0.00 0.00 0.00 4.79
390 391 0.033109 CAATCCCCTTTCCTCACCCC 60.033 60.000 0.00 0.00 0.00 4.95
391 392 0.033109 CCAATCCCCTTTCCTCACCC 60.033 60.000 0.00 0.00 0.00 4.61
392 393 0.033109 CCCAATCCCCTTTCCTCACC 60.033 60.000 0.00 0.00 0.00 4.02
393 394 0.684479 GCCCAATCCCCTTTCCTCAC 60.684 60.000 0.00 0.00 0.00 3.51
394 395 0.850883 AGCCCAATCCCCTTTCCTCA 60.851 55.000 0.00 0.00 0.00 3.86
395 396 0.396278 CAGCCCAATCCCCTTTCCTC 60.396 60.000 0.00 0.00 0.00 3.71
396 397 1.149133 ACAGCCCAATCCCCTTTCCT 61.149 55.000 0.00 0.00 0.00 3.36
397 398 0.252239 AACAGCCCAATCCCCTTTCC 60.252 55.000 0.00 0.00 0.00 3.13
398 399 1.186200 GAACAGCCCAATCCCCTTTC 58.814 55.000 0.00 0.00 0.00 2.62
399 400 0.611896 CGAACAGCCCAATCCCCTTT 60.612 55.000 0.00 0.00 0.00 3.11
400 401 1.000896 CGAACAGCCCAATCCCCTT 60.001 57.895 0.00 0.00 0.00 3.95
401 402 2.677228 CGAACAGCCCAATCCCCT 59.323 61.111 0.00 0.00 0.00 4.79
402 403 3.140814 GCGAACAGCCCAATCCCC 61.141 66.667 0.00 0.00 40.81 4.81
411 412 3.288809 AAAGAATTTCAGGCGAACAGC 57.711 42.857 0.00 0.00 38.74 4.40
412 413 3.426525 GCAAAAGAATTTCAGGCGAACAG 59.573 43.478 0.00 0.00 37.28 3.16
413 414 3.380142 GCAAAAGAATTTCAGGCGAACA 58.620 40.909 0.00 0.00 37.28 3.18
418 419 0.710017 CGCGCAAAAGAATTTCAGGC 59.290 50.000 8.75 0.00 37.28 4.85
419 420 1.715519 CACGCGCAAAAGAATTTCAGG 59.284 47.619 5.73 0.00 37.28 3.86
420 421 1.715519 CCACGCGCAAAAGAATTTCAG 59.284 47.619 5.73 0.00 37.28 3.02
421 422 1.601663 CCCACGCGCAAAAGAATTTCA 60.602 47.619 5.73 0.00 37.28 2.69
422 423 1.059942 CCCACGCGCAAAAGAATTTC 58.940 50.000 5.73 0.00 37.28 2.17
423 424 0.943835 GCCCACGCGCAAAAGAATTT 60.944 50.000 5.73 0.00 42.41 1.82
424 425 1.372872 GCCCACGCGCAAAAGAATT 60.373 52.632 5.73 0.00 0.00 2.17
425 426 2.258286 GCCCACGCGCAAAAGAAT 59.742 55.556 5.73 0.00 0.00 2.40
443 444 2.040009 TATAGAGGCAGGCCCGCAAC 62.040 60.000 14.18 5.90 39.21 4.17
444 445 1.341913 TTATAGAGGCAGGCCCGCAA 61.342 55.000 14.18 0.00 39.21 4.85
445 446 1.341913 TTTATAGAGGCAGGCCCGCA 61.342 55.000 14.18 0.00 39.21 5.69
446 447 0.179029 TTTTATAGAGGCAGGCCCGC 60.179 55.000 0.95 0.95 39.21 6.13
447 448 1.947456 GTTTTTATAGAGGCAGGCCCG 59.053 52.381 6.70 0.00 39.21 6.13
448 449 2.688446 GTGTTTTTATAGAGGCAGGCCC 59.312 50.000 6.70 0.00 36.58 5.80
449 450 2.354821 CGTGTTTTTATAGAGGCAGGCC 59.645 50.000 0.97 0.97 0.00 5.19
450 451 3.267483 TCGTGTTTTTATAGAGGCAGGC 58.733 45.455 0.00 0.00 0.00 4.85
451 452 5.163754 CCTTTCGTGTTTTTATAGAGGCAGG 60.164 44.000 0.00 0.00 0.00 4.85
452 453 5.673818 GCCTTTCGTGTTTTTATAGAGGCAG 60.674 44.000 5.73 0.00 44.88 4.85
453 454 4.155280 GCCTTTCGTGTTTTTATAGAGGCA 59.845 41.667 5.73 0.00 44.88 4.75
454 455 4.659088 GCCTTTCGTGTTTTTATAGAGGC 58.341 43.478 0.00 0.00 40.15 4.70
455 456 4.201783 CCGCCTTTCGTGTTTTTATAGAGG 60.202 45.833 0.00 0.00 36.19 3.69
456 457 4.628333 TCCGCCTTTCGTGTTTTTATAGAG 59.372 41.667 0.00 0.00 36.19 2.43
457 458 4.567971 TCCGCCTTTCGTGTTTTTATAGA 58.432 39.130 0.00 0.00 36.19 1.98
458 459 4.628333 TCTCCGCCTTTCGTGTTTTTATAG 59.372 41.667 0.00 0.00 36.19 1.31
459 460 4.567971 TCTCCGCCTTTCGTGTTTTTATA 58.432 39.130 0.00 0.00 36.19 0.98
460 461 3.404899 TCTCCGCCTTTCGTGTTTTTAT 58.595 40.909 0.00 0.00 36.19 1.40
461 462 2.836262 TCTCCGCCTTTCGTGTTTTTA 58.164 42.857 0.00 0.00 36.19 1.52
462 463 1.670791 TCTCCGCCTTTCGTGTTTTT 58.329 45.000 0.00 0.00 36.19 1.94
463 464 1.332686 GTTCTCCGCCTTTCGTGTTTT 59.667 47.619 0.00 0.00 36.19 2.43
464 465 0.942252 GTTCTCCGCCTTTCGTGTTT 59.058 50.000 0.00 0.00 36.19 2.83
465 466 0.883370 GGTTCTCCGCCTTTCGTGTT 60.883 55.000 0.00 0.00 36.19 3.32
466 467 1.301479 GGTTCTCCGCCTTTCGTGT 60.301 57.895 0.00 0.00 36.19 4.49
467 468 1.301401 TGGTTCTCCGCCTTTCGTG 60.301 57.895 0.00 0.00 36.19 4.35
468 469 1.301479 GTGGTTCTCCGCCTTTCGT 60.301 57.895 0.00 0.00 38.21 3.85
469 470 1.301401 TGTGGTTCTCCGCCTTTCG 60.301 57.895 0.00 0.00 43.03 3.46
470 471 0.534203 TGTGTGGTTCTCCGCCTTTC 60.534 55.000 0.00 0.00 43.03 2.62
471 472 0.106918 TTGTGTGGTTCTCCGCCTTT 60.107 50.000 0.00 0.00 43.03 3.11
472 473 0.110486 ATTGTGTGGTTCTCCGCCTT 59.890 50.000 0.00 0.00 43.03 4.35
473 474 0.321653 GATTGTGTGGTTCTCCGCCT 60.322 55.000 0.00 0.00 43.03 5.52
474 475 0.321653 AGATTGTGTGGTTCTCCGCC 60.322 55.000 0.00 0.00 43.03 6.13
475 476 1.079503 GAGATTGTGTGGTTCTCCGC 58.920 55.000 0.00 0.00 43.87 5.54
476 477 2.455674 TGAGATTGTGTGGTTCTCCG 57.544 50.000 0.00 0.00 35.99 4.63
477 478 3.274288 GGATGAGATTGTGTGGTTCTCC 58.726 50.000 0.00 0.00 35.99 3.71
478 479 3.942829 TGGATGAGATTGTGTGGTTCTC 58.057 45.455 0.00 0.00 37.10 2.87
479 480 4.521146 GATGGATGAGATTGTGTGGTTCT 58.479 43.478 0.00 0.00 0.00 3.01
480 481 3.629398 GGATGGATGAGATTGTGTGGTTC 59.371 47.826 0.00 0.00 0.00 3.62
481 482 3.010472 TGGATGGATGAGATTGTGTGGTT 59.990 43.478 0.00 0.00 0.00 3.67
482 483 2.577563 TGGATGGATGAGATTGTGTGGT 59.422 45.455 0.00 0.00 0.00 4.16
483 484 3.118149 TCTGGATGGATGAGATTGTGTGG 60.118 47.826 0.00 0.00 0.00 4.17
484 485 4.146745 TCTGGATGGATGAGATTGTGTG 57.853 45.455 0.00 0.00 0.00 3.82
485 486 4.849813 TTCTGGATGGATGAGATTGTGT 57.150 40.909 0.00 0.00 0.00 3.72
486 487 6.710597 ATTTTCTGGATGGATGAGATTGTG 57.289 37.500 0.00 0.00 0.00 3.33
487 488 6.893554 TCAATTTTCTGGATGGATGAGATTGT 59.106 34.615 0.00 0.00 0.00 2.71
488 489 7.342769 TCAATTTTCTGGATGGATGAGATTG 57.657 36.000 0.00 0.00 0.00 2.67
489 490 7.966339 TTCAATTTTCTGGATGGATGAGATT 57.034 32.000 0.00 0.00 0.00 2.40
490 491 7.232941 GGATTCAATTTTCTGGATGGATGAGAT 59.767 37.037 0.00 0.00 0.00 2.75
491 492 6.548622 GGATTCAATTTTCTGGATGGATGAGA 59.451 38.462 0.00 0.00 0.00 3.27
492 493 6.550108 AGGATTCAATTTTCTGGATGGATGAG 59.450 38.462 0.00 0.00 0.00 2.90
493 494 6.437755 AGGATTCAATTTTCTGGATGGATGA 58.562 36.000 0.00 0.00 0.00 2.92
494 495 6.726490 AGGATTCAATTTTCTGGATGGATG 57.274 37.500 0.00 0.00 0.00 3.51
495 496 6.488006 CGTAGGATTCAATTTTCTGGATGGAT 59.512 38.462 0.00 0.00 0.00 3.41
496 497 5.822519 CGTAGGATTCAATTTTCTGGATGGA 59.177 40.000 0.00 0.00 0.00 3.41
497 498 5.590259 ACGTAGGATTCAATTTTCTGGATGG 59.410 40.000 0.00 0.00 0.00 3.51
498 499 6.683974 ACGTAGGATTCAATTTTCTGGATG 57.316 37.500 0.00 0.00 0.00 3.51
499 500 7.393234 TGAAACGTAGGATTCAATTTTCTGGAT 59.607 33.333 5.74 0.00 35.21 3.41
500 501 6.712998 TGAAACGTAGGATTCAATTTTCTGGA 59.287 34.615 5.74 0.00 35.21 3.86
501 502 6.801862 GTGAAACGTAGGATTCAATTTTCTGG 59.198 38.462 9.35 0.00 38.72 3.86
502 503 7.359595 TGTGAAACGTAGGATTCAATTTTCTG 58.640 34.615 9.35 0.00 42.39 3.02
503 504 7.504924 TGTGAAACGTAGGATTCAATTTTCT 57.495 32.000 9.35 0.00 42.39 2.52
504 505 7.201350 GCATGTGAAACGTAGGATTCAATTTTC 60.201 37.037 9.35 0.00 42.39 2.29
505 506 6.586082 GCATGTGAAACGTAGGATTCAATTTT 59.414 34.615 9.35 0.00 42.39 1.82
506 507 6.092748 GCATGTGAAACGTAGGATTCAATTT 58.907 36.000 9.35 0.00 42.39 1.82
507 508 5.393027 GGCATGTGAAACGTAGGATTCAATT 60.393 40.000 9.35 0.00 42.39 2.32
508 509 4.096382 GGCATGTGAAACGTAGGATTCAAT 59.904 41.667 9.35 4.29 42.39 2.57
509 510 3.438781 GGCATGTGAAACGTAGGATTCAA 59.561 43.478 9.35 2.44 42.39 2.69
510 511 3.006940 GGCATGTGAAACGTAGGATTCA 58.993 45.455 4.23 4.23 42.39 2.57
511 512 3.270877 AGGCATGTGAAACGTAGGATTC 58.729 45.455 0.00 0.00 42.39 2.52
512 513 3.350219 AGGCATGTGAAACGTAGGATT 57.650 42.857 0.00 0.00 42.39 3.01
513 514 3.009723 CAAGGCATGTGAAACGTAGGAT 58.990 45.455 0.00 0.00 42.39 3.24
514 515 2.422597 CAAGGCATGTGAAACGTAGGA 58.577 47.619 0.00 0.00 42.39 2.94
515 516 1.468520 CCAAGGCATGTGAAACGTAGG 59.531 52.381 0.00 0.00 42.39 3.18
516 517 2.422597 TCCAAGGCATGTGAAACGTAG 58.577 47.619 0.00 0.00 42.39 3.51
517 518 2.552599 TCCAAGGCATGTGAAACGTA 57.447 45.000 0.00 0.00 42.39 3.57
518 519 1.541147 CATCCAAGGCATGTGAAACGT 59.459 47.619 0.00 0.00 42.39 3.99
519 520 1.541147 ACATCCAAGGCATGTGAAACG 59.459 47.619 0.00 0.00 42.39 3.60
520 521 3.665745 AACATCCAAGGCATGTGAAAC 57.334 42.857 0.00 0.00 34.59 2.78
521 522 4.321899 GCTAAACATCCAAGGCATGTGAAA 60.322 41.667 0.00 0.00 34.59 2.69
522 523 3.193267 GCTAAACATCCAAGGCATGTGAA 59.807 43.478 0.00 0.00 34.59 3.18
523 524 2.754552 GCTAAACATCCAAGGCATGTGA 59.245 45.455 0.00 0.00 34.59 3.58
524 525 2.492881 TGCTAAACATCCAAGGCATGTG 59.507 45.455 0.00 0.00 34.59 3.21
525 526 2.493278 GTGCTAAACATCCAAGGCATGT 59.507 45.455 0.00 0.00 35.94 3.21
526 527 2.159198 GGTGCTAAACATCCAAGGCATG 60.159 50.000 0.00 0.00 32.38 4.06
527 528 2.102578 GGTGCTAAACATCCAAGGCAT 58.897 47.619 0.00 0.00 32.38 4.40
528 529 1.202989 TGGTGCTAAACATCCAAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
529 530 1.544724 TGGTGCTAAACATCCAAGGC 58.455 50.000 0.00 0.00 0.00 4.35
530 531 3.763360 TGATTGGTGCTAAACATCCAAGG 59.237 43.478 0.00 0.00 40.45 3.61
531 532 5.105635 ACATGATTGGTGCTAAACATCCAAG 60.106 40.000 0.00 0.00 40.45 3.61
532 533 4.771577 ACATGATTGGTGCTAAACATCCAA 59.228 37.500 0.00 0.00 40.97 3.53
533 534 4.343231 ACATGATTGGTGCTAAACATCCA 58.657 39.130 0.00 0.00 0.00 3.41
534 535 4.989279 ACATGATTGGTGCTAAACATCC 57.011 40.909 0.00 0.00 0.00 3.51
535 536 7.275560 GGTAAAACATGATTGGTGCTAAACATC 59.724 37.037 0.00 0.00 0.00 3.06
536 537 7.096551 GGTAAAACATGATTGGTGCTAAACAT 58.903 34.615 0.00 0.00 0.00 2.71
537 538 6.451393 GGTAAAACATGATTGGTGCTAAACA 58.549 36.000 0.00 0.00 0.00 2.83
538 539 5.867174 GGGTAAAACATGATTGGTGCTAAAC 59.133 40.000 0.00 0.00 0.00 2.01
539 540 5.540337 TGGGTAAAACATGATTGGTGCTAAA 59.460 36.000 0.00 0.00 0.00 1.85
540 541 5.047660 GTGGGTAAAACATGATTGGTGCTAA 60.048 40.000 0.00 0.00 0.00 3.09
541 542 4.461081 GTGGGTAAAACATGATTGGTGCTA 59.539 41.667 0.00 0.00 0.00 3.49
542 543 3.258123 GTGGGTAAAACATGATTGGTGCT 59.742 43.478 0.00 0.00 0.00 4.40
543 544 3.258123 AGTGGGTAAAACATGATTGGTGC 59.742 43.478 0.00 0.00 0.00 5.01
544 545 4.766891 AGAGTGGGTAAAACATGATTGGTG 59.233 41.667 0.00 0.00 0.00 4.17
545 546 4.998051 AGAGTGGGTAAAACATGATTGGT 58.002 39.130 0.00 0.00 0.00 3.67
546 547 5.982890 AAGAGTGGGTAAAACATGATTGG 57.017 39.130 0.00 0.00 0.00 3.16
549 550 8.903820 GCTAATTAAGAGTGGGTAAAACATGAT 58.096 33.333 0.00 0.00 0.00 2.45
550 551 7.065324 CGCTAATTAAGAGTGGGTAAAACATGA 59.935 37.037 0.00 0.00 0.00 3.07
551 552 7.186804 CGCTAATTAAGAGTGGGTAAAACATG 58.813 38.462 0.00 0.00 0.00 3.21
552 553 6.183360 GCGCTAATTAAGAGTGGGTAAAACAT 60.183 38.462 0.00 0.00 0.00 2.71
553 554 5.122711 GCGCTAATTAAGAGTGGGTAAAACA 59.877 40.000 0.00 0.00 0.00 2.83
554 555 5.353400 AGCGCTAATTAAGAGTGGGTAAAAC 59.647 40.000 8.99 0.00 0.00 2.43
555 556 5.353123 CAGCGCTAATTAAGAGTGGGTAAAA 59.647 40.000 10.99 0.00 0.00 1.52
556 557 4.873827 CAGCGCTAATTAAGAGTGGGTAAA 59.126 41.667 10.99 0.00 0.00 2.01
557 558 4.439057 CAGCGCTAATTAAGAGTGGGTAA 58.561 43.478 10.99 0.00 0.00 2.85
558 559 3.181469 CCAGCGCTAATTAAGAGTGGGTA 60.181 47.826 10.99 0.00 0.00 3.69
559 560 2.420129 CCAGCGCTAATTAAGAGTGGGT 60.420 50.000 10.99 0.00 0.00 4.51
560 561 2.213499 CCAGCGCTAATTAAGAGTGGG 58.787 52.381 10.99 0.00 0.00 4.61
561 562 1.599542 GCCAGCGCTAATTAAGAGTGG 59.400 52.381 10.99 4.89 32.93 4.00
562 563 1.258982 CGCCAGCGCTAATTAAGAGTG 59.741 52.381 10.99 0.00 0.00 3.51
563 564 1.571919 CGCCAGCGCTAATTAAGAGT 58.428 50.000 10.99 0.00 0.00 3.24
604 605 3.755461 TATTTTCTTGAGGGGCGGGGC 62.755 57.143 0.00 0.00 0.00 5.80
605 606 0.257616 TATTTTCTTGAGGGGCGGGG 59.742 55.000 0.00 0.00 0.00 5.73
606 607 1.389555 GTATTTTCTTGAGGGGCGGG 58.610 55.000 0.00 0.00 0.00 6.13
607 608 1.389555 GGTATTTTCTTGAGGGGCGG 58.610 55.000 0.00 0.00 0.00 6.13
608 609 1.340600 TGGGTATTTTCTTGAGGGGCG 60.341 52.381 0.00 0.00 0.00 6.13
609 610 2.100197 GTGGGTATTTTCTTGAGGGGC 58.900 52.381 0.00 0.00 0.00 5.80
610 611 2.623239 GGGTGGGTATTTTCTTGAGGGG 60.623 54.545 0.00 0.00 0.00 4.79
611 612 2.623239 GGGGTGGGTATTTTCTTGAGGG 60.623 54.545 0.00 0.00 0.00 4.30
612 613 2.311841 AGGGGTGGGTATTTTCTTGAGG 59.688 50.000 0.00 0.00 0.00 3.86
613 614 3.621558 GAGGGGTGGGTATTTTCTTGAG 58.378 50.000 0.00 0.00 0.00 3.02
614 615 2.026636 CGAGGGGTGGGTATTTTCTTGA 60.027 50.000 0.00 0.00 0.00 3.02
615 616 2.365582 CGAGGGGTGGGTATTTTCTTG 58.634 52.381 0.00 0.00 0.00 3.02
616 617 1.340697 GCGAGGGGTGGGTATTTTCTT 60.341 52.381 0.00 0.00 0.00 2.52
617 618 0.255033 GCGAGGGGTGGGTATTTTCT 59.745 55.000 0.00 0.00 0.00 2.52
618 619 0.255033 AGCGAGGGGTGGGTATTTTC 59.745 55.000 0.00 0.00 0.00 2.29
619 620 0.702316 AAGCGAGGGGTGGGTATTTT 59.298 50.000 0.00 0.00 0.00 1.82
620 621 0.034477 CAAGCGAGGGGTGGGTATTT 60.034 55.000 0.00 0.00 0.00 1.40
621 622 0.912487 TCAAGCGAGGGGTGGGTATT 60.912 55.000 0.00 0.00 0.00 1.89
622 623 1.306654 TCAAGCGAGGGGTGGGTAT 60.307 57.895 0.00 0.00 0.00 2.73
623 624 1.987855 CTCAAGCGAGGGGTGGGTA 60.988 63.158 0.00 0.00 35.44 3.69
624 625 3.322466 CTCAAGCGAGGGGTGGGT 61.322 66.667 0.00 0.00 35.44 4.51
625 626 3.003173 TCTCAAGCGAGGGGTGGG 61.003 66.667 0.00 0.00 39.95 4.61
626 627 2.581354 CTCTCAAGCGAGGGGTGG 59.419 66.667 0.00 0.00 39.95 4.61
627 628 2.125350 GCTCTCAAGCGAGGGGTG 60.125 66.667 0.00 0.00 40.46 4.61
637 638 6.986817 GTCAGCCTTATTATACTTGCTCTCAA 59.013 38.462 0.00 0.00 0.00 3.02
638 639 6.325028 AGTCAGCCTTATTATACTTGCTCTCA 59.675 38.462 0.00 0.00 0.00 3.27
639 640 6.754193 AGTCAGCCTTATTATACTTGCTCTC 58.246 40.000 0.00 0.00 0.00 3.20
708 709 1.064314 TCTCTCCCTCTTTCTCTCCCG 60.064 57.143 0.00 0.00 0.00 5.14
1546 1984 9.605275 CCTGTACATCAAAGAAAGATCATCTAA 57.395 33.333 0.00 0.00 0.00 2.10
1580 2018 4.023707 CCAAGATTCAGCAAACGAGAAGTT 60.024 41.667 0.00 0.00 46.76 2.66
1897 2335 1.837439 TCCCCTGCTCAACGACATAAT 59.163 47.619 0.00 0.00 0.00 1.28
2359 2807 2.553172 ACTAGCCTCCTTATAACTCGCG 59.447 50.000 0.00 0.00 0.00 5.87
2484 2932 1.425412 CCAGCAATGCTCAAACAAGC 58.575 50.000 4.03 0.00 42.82 4.01
2485 2933 1.614903 TCCCAGCAATGCTCAAACAAG 59.385 47.619 4.03 0.00 36.40 3.16
2486 2934 1.614903 CTCCCAGCAATGCTCAAACAA 59.385 47.619 4.03 0.00 36.40 2.83
2487 2935 1.202915 TCTCCCAGCAATGCTCAAACA 60.203 47.619 4.03 0.00 36.40 2.83
2488 2936 1.538047 TCTCCCAGCAATGCTCAAAC 58.462 50.000 4.03 0.00 36.40 2.93
2489 2937 2.519771 ATCTCCCAGCAATGCTCAAA 57.480 45.000 4.03 0.00 36.40 2.69
2490 2938 2.025605 AGAATCTCCCAGCAATGCTCAA 60.026 45.455 4.03 0.00 36.40 3.02
2491 2939 1.562942 AGAATCTCCCAGCAATGCTCA 59.437 47.619 4.03 0.00 36.40 4.26
2492 2940 2.345124 AGAATCTCCCAGCAATGCTC 57.655 50.000 4.03 0.00 36.40 4.26
2493 2941 2.822707 AAGAATCTCCCAGCAATGCT 57.177 45.000 0.00 0.00 40.77 3.79
2494 2942 4.989279 TTTAAGAATCTCCCAGCAATGC 57.011 40.909 0.00 0.00 0.00 3.56
2495 2943 6.153340 TCCTTTTTAAGAATCTCCCAGCAATG 59.847 38.462 0.00 0.00 0.00 2.82
2536 2985 3.869832 GACCTTCTAGGCGTTCCAAATAC 59.130 47.826 0.00 0.00 39.63 1.89
2556 3005 1.216710 CTCTTGTCCGGCTCCAGAC 59.783 63.158 0.00 0.00 0.00 3.51
3073 3581 5.069119 TGGTTATCTCGACTGCATTGACTAT 59.931 40.000 0.00 0.00 0.00 2.12
3088 3596 6.942532 TTTCCACTATTGCATGGTTATCTC 57.057 37.500 4.04 0.00 37.27 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.