Multiple sequence alignment - TraesCS7A01G512800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G512800 chr7A 100.000 3799 0 0 1 3799 699921657 699925455 0.000000e+00 7016.0
1 TraesCS7A01G512800 chr7A 78.238 1498 259 43 247 1696 700160750 700159272 0.000000e+00 898.0
2 TraesCS7A01G512800 chr7A 77.555 499 72 26 218 683 700074350 700073859 8.090000e-67 265.0
3 TraesCS7A01G512800 chr7A 83.755 277 33 3 1288 1553 700073251 700072976 6.300000e-63 252.0
4 TraesCS7A01G512800 chr7A 75.989 379 79 10 448 823 699865594 699865225 6.480000e-43 185.0
5 TraesCS7A01G512800 chr7A 95.349 43 2 0 3757 3799 130384144 130384186 6.810000e-08 69.4
6 TraesCS7A01G512800 chr7B 89.722 2121 114 34 1758 3799 694195658 694197753 0.000000e+00 2614.0
7 TraesCS7A01G512800 chr7B 93.777 1623 56 20 71 1667 684969432 684971035 0.000000e+00 2396.0
8 TraesCS7A01G512800 chr7B 91.541 1596 60 21 105 1667 697804431 697802878 0.000000e+00 2130.0
9 TraesCS7A01G512800 chr7B 96.335 1064 37 2 605 1667 694194598 694195660 0.000000e+00 1748.0
10 TraesCS7A01G512800 chr7B 83.390 1776 171 58 1758 3465 684971033 684972752 0.000000e+00 1531.0
11 TraesCS7A01G512800 chr7B 82.649 1631 162 56 1900 3465 697802577 697801003 0.000000e+00 1332.0
12 TraesCS7A01G512800 chr7B 79.643 1346 222 31 239 1555 697402190 697403512 0.000000e+00 920.0
13 TraesCS7A01G512800 chr7B 77.031 1785 297 71 232 1938 697615815 697614066 0.000000e+00 920.0
14 TraesCS7A01G512800 chr7B 76.509 1673 307 61 247 1863 92959502 92961144 0.000000e+00 833.0
15 TraesCS7A01G512800 chr7B 77.532 1313 228 39 321 1599 684954042 684952763 0.000000e+00 728.0
16 TraesCS7A01G512800 chr7B 87.340 624 33 17 64 654 694193992 694194602 0.000000e+00 673.0
17 TraesCS7A01G512800 chr7B 82.143 756 94 25 2687 3411 698513439 698512694 9.020000e-171 610.0
18 TraesCS7A01G512800 chr7B 88.599 307 24 6 3494 3799 695286431 695286727 2.790000e-96 363.0
19 TraesCS7A01G512800 chr7B 87.622 307 26 7 3494 3799 695494196 695493901 2.810000e-91 346.0
20 TraesCS7A01G512800 chr7B 87.582 306 24 8 3495 3799 698234203 698233911 3.630000e-90 342.0
21 TraesCS7A01G512800 chr7B 83.193 357 34 17 3112 3461 699164640 699164303 1.710000e-78 303.0
22 TraesCS7A01G512800 chr7B 95.139 144 7 0 1758 1901 697802880 697802737 1.060000e-55 228.0
23 TraesCS7A01G512800 chr7B 88.043 92 6 3 2335 2422 694267235 694267325 1.870000e-18 104.0
24 TraesCS7A01G512800 chr7B 86.905 84 10 1 2339 2422 695356803 695356885 4.040000e-15 93.5
25 TraesCS7A01G512800 chr7B 87.500 80 9 1 2343 2422 685052126 685052204 1.450000e-14 91.6
26 TraesCS7A01G512800 chr7B 79.856 139 15 11 2348 2475 695489924 695489788 5.230000e-14 89.8
27 TraesCS7A01G512800 chr7B 97.778 45 1 0 3755 3799 697034695 697034739 1.130000e-10 78.7
28 TraesCS7A01G512800 chr7B 95.455 44 2 0 3756 3799 92960187 92960230 1.890000e-08 71.3
29 TraesCS7A01G512800 chr7B 76.429 140 19 13 2348 2475 698212041 698211904 3.170000e-06 63.9
30 TraesCS7A01G512800 chr7D 89.345 1511 117 22 679 2151 609648366 609649870 0.000000e+00 1858.0
31 TraesCS7A01G512800 chr7D 76.429 1680 306 58 321 1938 610651506 610653157 0.000000e+00 826.0
32 TraesCS7A01G512800 chr7D 76.982 1577 268 63 239 1748 608727508 608729056 0.000000e+00 813.0
33 TraesCS7A01G512800 chr7D 75.457 1695 315 66 285 1907 607931256 607932921 0.000000e+00 732.0
34 TraesCS7A01G512800 chr7D 88.487 304 35 0 3496 3799 608104764 608104461 6.000000e-98 368.0
35 TraesCS7A01G512800 chr7D 86.760 287 26 7 2910 3193 608140723 608140446 3.690000e-80 309.0
36 TraesCS7A01G512800 chr7D 84.444 90 9 5 2335 2422 609945254 609945168 2.430000e-12 84.2
37 TraesCS7A01G512800 chrUn 77.231 1524 266 52 232 1695 77772819 77774321 0.000000e+00 817.0
38 TraesCS7A01G512800 chrUn 88.197 305 25 5 3494 3797 77780267 77780561 1.680000e-93 353.0
39 TraesCS7A01G512800 chrUn 80.405 148 16 11 2339 2475 77788575 77788720 2.410000e-17 100.0
40 TraesCS7A01G512800 chr4A 79.160 667 78 28 2686 3304 661704306 661703653 4.570000e-109 405.0
41 TraesCS7A01G512800 chr1B 77.331 472 77 16 1154 1601 676215561 676215096 6.300000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G512800 chr7A 699921657 699925455 3798 False 7016.000000 7016 100.000000 1 3799 1 chr7A.!!$F2 3798
1 TraesCS7A01G512800 chr7A 700159272 700160750 1478 True 898.000000 898 78.238000 247 1696 1 chr7A.!!$R2 1449
2 TraesCS7A01G512800 chr7A 700072976 700074350 1374 True 258.500000 265 80.655000 218 1553 2 chr7A.!!$R3 1335
3 TraesCS7A01G512800 chr7B 684969432 684972752 3320 False 1963.500000 2396 88.583500 71 3465 2 chr7B.!!$F8 3394
4 TraesCS7A01G512800 chr7B 694193992 694197753 3761 False 1678.333333 2614 91.132333 64 3799 3 chr7B.!!$F9 3735
5 TraesCS7A01G512800 chr7B 697801003 697804431 3428 True 1230.000000 2130 89.776333 105 3465 3 chr7B.!!$R8 3360
6 TraesCS7A01G512800 chr7B 697402190 697403512 1322 False 920.000000 920 79.643000 239 1555 1 chr7B.!!$F6 1316
7 TraesCS7A01G512800 chr7B 697614066 697615815 1749 True 920.000000 920 77.031000 232 1938 1 chr7B.!!$R2 1706
8 TraesCS7A01G512800 chr7B 684952763 684954042 1279 True 728.000000 728 77.532000 321 1599 1 chr7B.!!$R1 1278
9 TraesCS7A01G512800 chr7B 698512694 698513439 745 True 610.000000 610 82.143000 2687 3411 1 chr7B.!!$R5 724
10 TraesCS7A01G512800 chr7B 92959502 92961144 1642 False 452.150000 833 85.982000 247 3799 2 chr7B.!!$F7 3552
11 TraesCS7A01G512800 chr7B 695489788 695494196 4408 True 217.900000 346 83.739000 2348 3799 2 chr7B.!!$R7 1451
12 TraesCS7A01G512800 chr7D 609648366 609649870 1504 False 1858.000000 1858 89.345000 679 2151 1 chr7D.!!$F3 1472
13 TraesCS7A01G512800 chr7D 610651506 610653157 1651 False 826.000000 826 76.429000 321 1938 1 chr7D.!!$F4 1617
14 TraesCS7A01G512800 chr7D 608727508 608729056 1548 False 813.000000 813 76.982000 239 1748 1 chr7D.!!$F2 1509
15 TraesCS7A01G512800 chr7D 607931256 607932921 1665 False 732.000000 732 75.457000 285 1907 1 chr7D.!!$F1 1622
16 TraesCS7A01G512800 chrUn 77772819 77774321 1502 False 817.000000 817 77.231000 232 1695 1 chrUn.!!$F1 1463
17 TraesCS7A01G512800 chr4A 661703653 661704306 653 True 405.000000 405 79.160000 2686 3304 1 chr4A.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 300 0.631753 TCCTGACCGAGATCCTCCTT 59.368 55.0 0.00 0.00 0.0 3.36 F
2006 2312 0.179089 ACATCCTGTGAGCTCATCGC 60.179 55.0 21.47 7.85 39.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2398 0.609681 TGCCTGTGCAATGATGAGCA 60.610 50.0 0.00 0.0 46.66 4.26 R
3667 7062 0.179097 GGAGAAGTAGAAGGCAGCCG 60.179 60.0 5.55 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.417780 CACACTCATACTGGAGATAAGAAAAG 57.582 38.462 0.00 0.00 38.30 2.27
26 27 8.253810 CACACTCATACTGGAGATAAGAAAAGA 58.746 37.037 0.00 0.00 38.30 2.52
27 28 8.474025 ACACTCATACTGGAGATAAGAAAAGAG 58.526 37.037 0.00 0.00 38.30 2.85
29 30 6.821388 TCATACTGGAGATAAGAAAAGAGCC 58.179 40.000 0.00 0.00 0.00 4.70
31 32 5.096443 ACTGGAGATAAGAAAAGAGCCAG 57.904 43.478 0.00 0.00 45.36 4.85
33 34 3.264193 TGGAGATAAGAAAAGAGCCAGCA 59.736 43.478 0.00 0.00 0.00 4.41
35 36 4.095632 GGAGATAAGAAAAGAGCCAGCAAC 59.904 45.833 0.00 0.00 0.00 4.17
36 37 3.686726 AGATAAGAAAAGAGCCAGCAACG 59.313 43.478 0.00 0.00 0.00 4.10
37 38 1.680338 AAGAAAAGAGCCAGCAACGT 58.320 45.000 0.00 0.00 0.00 3.99
38 39 1.680338 AGAAAAGAGCCAGCAACGTT 58.320 45.000 0.00 0.00 0.00 3.99
39 40 2.024414 AGAAAAGAGCCAGCAACGTTT 58.976 42.857 0.00 0.00 0.00 3.60
41 42 2.208326 AAAGAGCCAGCAACGTTTTG 57.792 45.000 0.00 0.00 35.62 2.44
42 43 1.102978 AAGAGCCAGCAACGTTTTGT 58.897 45.000 0.00 0.00 34.90 2.83
43 44 1.961793 AGAGCCAGCAACGTTTTGTA 58.038 45.000 0.00 0.00 34.90 2.41
47 48 3.207778 AGCCAGCAACGTTTTGTACTTA 58.792 40.909 0.00 0.00 34.90 2.24
48 49 3.002965 AGCCAGCAACGTTTTGTACTTAC 59.997 43.478 0.00 0.00 34.90 2.34
50 51 3.245754 CCAGCAACGTTTTGTACTTACGA 59.754 43.478 17.46 0.00 38.56 3.43
51 52 4.442705 CAGCAACGTTTTGTACTTACGAG 58.557 43.478 17.46 11.87 38.56 4.18
52 53 4.026310 CAGCAACGTTTTGTACTTACGAGT 60.026 41.667 17.46 6.23 38.56 4.18
53 54 4.026310 AGCAACGTTTTGTACTTACGAGTG 60.026 41.667 17.46 15.04 38.56 3.51
54 55 4.026640 GCAACGTTTTGTACTTACGAGTGA 60.027 41.667 17.46 0.00 38.56 3.41
55 56 5.500610 GCAACGTTTTGTACTTACGAGTGAA 60.501 40.000 17.46 0.00 38.56 3.18
56 57 6.468484 CAACGTTTTGTACTTACGAGTGAAA 58.532 36.000 17.46 0.00 38.56 2.69
57 58 6.264909 ACGTTTTGTACTTACGAGTGAAAG 57.735 37.500 17.46 0.00 38.56 2.62
58 59 5.807011 ACGTTTTGTACTTACGAGTGAAAGT 59.193 36.000 17.46 0.00 39.25 2.66
62 63 5.694231 TGTACTTACGAGTGAAAGTAGCA 57.306 39.130 0.00 0.00 38.51 3.49
65 66 3.319972 ACTTACGAGTGAAAGTAGCACCA 59.680 43.478 0.00 0.00 36.95 4.17
69 70 3.006967 ACGAGTGAAAGTAGCACCAATCT 59.993 43.478 0.00 0.00 36.95 2.40
103 104 2.813200 GAGGGTTCCGGACGGATC 59.187 66.667 14.89 13.38 44.74 3.36
180 181 2.806237 GGTTCTACCTCCCTCGCG 59.194 66.667 0.00 0.00 34.73 5.87
193 194 2.123597 TCGCGGGCCTATACCACT 60.124 61.111 6.13 0.00 0.00 4.00
295 300 0.631753 TCCTGACCGAGATCCTCCTT 59.368 55.000 0.00 0.00 0.00 3.36
359 379 2.227089 GACTCGCCACCGAACCATCT 62.227 60.000 0.00 0.00 43.87 2.90
399 419 1.472662 CCTCCACGAACCACCACTCT 61.473 60.000 0.00 0.00 0.00 3.24
417 437 3.254024 TTCGGCTTCCTCCAGTGCC 62.254 63.158 0.00 0.00 41.76 5.01
753 848 1.303398 AGACGGCGGAAGAGACAGA 60.303 57.895 13.24 0.00 0.00 3.41
836 931 0.947244 CACCGGAATATGGCAAGCTC 59.053 55.000 9.46 0.00 0.00 4.09
924 1027 1.912371 CTTCTTTTCTCGGGCGCCAC 61.912 60.000 30.85 16.91 0.00 5.01
1031 1140 2.880890 CCATTGCTAATCTACCACCTGC 59.119 50.000 0.00 0.00 0.00 4.85
1411 1546 1.069022 CATTGTTGTCTTCACGGGCAG 60.069 52.381 0.00 0.00 0.00 4.85
1460 1595 2.619074 CCTTGTTAGCTCCCTCCCTTTG 60.619 54.545 0.00 0.00 0.00 2.77
1666 1811 5.869649 TCCTGCACATTATGAGTAGCTTA 57.130 39.130 0.00 0.00 0.00 3.09
1668 1813 6.226052 TCCTGCACATTATGAGTAGCTTATG 58.774 40.000 0.00 0.00 0.00 1.90
1670 1815 5.367302 TGCACATTATGAGTAGCTTATGCA 58.633 37.500 0.00 0.00 42.74 3.96
1671 1816 5.237127 TGCACATTATGAGTAGCTTATGCAC 59.763 40.000 0.00 0.01 42.74 4.57
1674 1819 5.923114 ACATTATGAGTAGCTTATGCACGAG 59.077 40.000 0.00 0.00 42.74 4.18
1676 1821 3.150848 TGAGTAGCTTATGCACGAGTG 57.849 47.619 0.00 0.00 42.74 3.51
1740 1885 5.755409 TTAAGGAGTAGCTTTGATGGTCA 57.245 39.130 0.00 0.00 0.00 4.02
1742 1887 4.213564 AGGAGTAGCTTTGATGGTCAAG 57.786 45.455 0.00 0.00 37.70 3.02
1743 1888 3.054802 AGGAGTAGCTTTGATGGTCAAGG 60.055 47.826 0.00 0.00 37.70 3.61
1745 1890 4.081087 GGAGTAGCTTTGATGGTCAAGGTA 60.081 45.833 0.00 0.00 37.70 3.08
1746 1891 5.488341 GAGTAGCTTTGATGGTCAAGGTAA 58.512 41.667 0.00 0.00 37.70 2.85
1748 1893 5.940470 AGTAGCTTTGATGGTCAAGGTAAAG 59.060 40.000 0.00 0.00 37.70 1.85
1749 1894 3.507622 AGCTTTGATGGTCAAGGTAAAGC 59.492 43.478 10.53 10.53 46.12 3.51
1750 1895 3.255642 GCTTTGATGGTCAAGGTAAAGCA 59.744 43.478 12.89 0.00 45.47 3.91
1751 1896 4.616835 GCTTTGATGGTCAAGGTAAAGCAG 60.617 45.833 12.89 0.00 45.47 4.24
1752 1897 4.365514 TTGATGGTCAAGGTAAAGCAGA 57.634 40.909 0.00 0.00 31.83 4.26
1753 1898 4.365514 TGATGGTCAAGGTAAAGCAGAA 57.634 40.909 0.00 0.00 0.00 3.02
1773 1918 8.860088 AGCAGAAGGATTACAAGTGTAAAATTT 58.140 29.630 7.91 3.39 42.93 1.82
1877 2022 7.039923 CGATAGGTATAAGGAGGCAGAAAGTTA 60.040 40.741 0.00 0.00 0.00 2.24
1930 2236 9.458374 TTTTATCTTGAGATGTTTCGAAAAACC 57.542 29.630 13.10 0.00 43.44 3.27
1931 2237 6.884280 ATCTTGAGATGTTTCGAAAAACCT 57.116 33.333 13.10 2.59 43.44 3.50
1932 2238 6.060028 TCTTGAGATGTTTCGAAAAACCTG 57.940 37.500 13.10 0.00 43.44 4.00
1933 2239 5.820423 TCTTGAGATGTTTCGAAAAACCTGA 59.180 36.000 13.10 0.00 43.44 3.86
1935 2241 6.633500 TGAGATGTTTCGAAAAACCTGAAT 57.367 33.333 13.10 0.00 43.44 2.57
1936 2242 7.737972 TGAGATGTTTCGAAAAACCTGAATA 57.262 32.000 13.10 0.00 43.44 1.75
1937 2243 8.160521 TGAGATGTTTCGAAAAACCTGAATAA 57.839 30.769 13.10 0.00 43.44 1.40
1939 2245 8.166422 AGATGTTTCGAAAAACCTGAATAACT 57.834 30.769 13.10 0.00 43.44 2.24
1940 2246 8.076178 AGATGTTTCGAAAAACCTGAATAACTG 58.924 33.333 13.10 0.00 43.44 3.16
1942 2248 7.540299 TGTTTCGAAAAACCTGAATAACTGTT 58.460 30.769 13.10 0.00 43.44 3.16
1946 2252 7.867752 TCGAAAAACCTGAATAACTGTTAAGG 58.132 34.615 12.92 12.92 36.02 2.69
1947 2253 7.499895 TCGAAAAACCTGAATAACTGTTAAGGT 59.500 33.333 13.97 13.97 43.53 3.50
1948 2254 7.801783 CGAAAAACCTGAATAACTGTTAAGGTC 59.198 37.037 18.09 10.83 41.29 3.85
1950 2256 8.706322 AAAACCTGAATAACTGTTAAGGTCAT 57.294 30.769 18.09 10.61 41.29 3.06
1954 2260 7.390718 ACCTGAATAACTGTTAAGGTCATGAAC 59.609 37.037 13.97 1.26 38.36 3.18
1956 2262 8.684386 TGAATAACTGTTAAGGTCATGAACAA 57.316 30.769 14.46 0.00 32.94 2.83
1957 2263 8.783093 TGAATAACTGTTAAGGTCATGAACAAG 58.217 33.333 14.46 4.84 32.94 3.16
1958 2264 8.918202 AATAACTGTTAAGGTCATGAACAAGA 57.082 30.769 14.46 0.00 32.94 3.02
1959 2265 9.520515 AATAACTGTTAAGGTCATGAACAAGAT 57.479 29.630 14.46 0.00 32.94 2.40
1960 2266 7.440523 AACTGTTAAGGTCATGAACAAGATC 57.559 36.000 14.46 0.01 32.94 2.75
1963 2269 5.939883 TGTTAAGGTCATGAACAAGATCCTG 59.060 40.000 14.46 0.00 30.37 3.86
1964 2270 4.916041 AAGGTCATGAACAAGATCCTGA 57.084 40.909 14.46 0.00 0.00 3.86
1965 2271 4.484537 AGGTCATGAACAAGATCCTGAG 57.515 45.455 14.46 0.00 0.00 3.35
1966 2272 3.843027 AGGTCATGAACAAGATCCTGAGT 59.157 43.478 14.46 0.00 0.00 3.41
1971 2277 4.263018 TGAACAAGATCCTGAGTCACTG 57.737 45.455 0.00 0.00 0.00 3.66
1972 2278 2.758736 ACAAGATCCTGAGTCACTGC 57.241 50.000 0.00 0.00 0.00 4.40
1976 2282 3.660970 AGATCCTGAGTCACTGCTCTA 57.339 47.619 0.00 0.00 36.51 2.43
1977 2283 3.974719 AGATCCTGAGTCACTGCTCTAA 58.025 45.455 0.00 0.00 36.51 2.10
1978 2284 4.348486 AGATCCTGAGTCACTGCTCTAAA 58.652 43.478 0.00 0.00 36.51 1.85
1981 2287 6.609212 AGATCCTGAGTCACTGCTCTAAATTA 59.391 38.462 0.00 0.00 36.51 1.40
1982 2288 6.798427 TCCTGAGTCACTGCTCTAAATTAT 57.202 37.500 0.00 0.00 36.51 1.28
1984 2290 8.306313 TCCTGAGTCACTGCTCTAAATTATAA 57.694 34.615 0.00 0.00 36.51 0.98
1985 2291 8.417106 TCCTGAGTCACTGCTCTAAATTATAAG 58.583 37.037 0.00 0.00 36.51 1.73
1986 2292 8.417106 CCTGAGTCACTGCTCTAAATTATAAGA 58.583 37.037 0.00 0.00 36.51 2.10
1988 2294 9.587772 TGAGTCACTGCTCTAAATTATAAGAAC 57.412 33.333 0.00 0.00 36.51 3.01
1989 2295 9.587772 GAGTCACTGCTCTAAATTATAAGAACA 57.412 33.333 0.00 0.00 32.99 3.18
1992 2298 9.547753 TCACTGCTCTAAATTATAAGAACATCC 57.452 33.333 0.00 0.00 0.00 3.51
1993 2299 9.553064 CACTGCTCTAAATTATAAGAACATCCT 57.447 33.333 0.00 0.00 0.00 3.24
1995 2301 9.553064 CTGCTCTAAATTATAAGAACATCCTGT 57.447 33.333 0.00 0.00 0.00 4.00
1996 2302 9.330063 TGCTCTAAATTATAAGAACATCCTGTG 57.670 33.333 0.00 0.00 0.00 3.66
1997 2303 9.547753 GCTCTAAATTATAAGAACATCCTGTGA 57.452 33.333 0.00 0.00 0.00 3.58
1999 2305 9.547753 TCTAAATTATAAGAACATCCTGTGAGC 57.452 33.333 0.00 0.00 0.00 4.26
2000 2306 9.553064 CTAAATTATAAGAACATCCTGTGAGCT 57.447 33.333 0.00 0.00 0.00 4.09
2001 2307 8.443953 AAATTATAAGAACATCCTGTGAGCTC 57.556 34.615 6.82 6.82 0.00 4.09
2002 2308 6.544928 TTATAAGAACATCCTGTGAGCTCA 57.455 37.500 13.74 13.74 0.00 4.26
2003 2309 3.996921 AAGAACATCCTGTGAGCTCAT 57.003 42.857 21.47 0.00 0.00 2.90
2004 2310 3.540314 AGAACATCCTGTGAGCTCATC 57.460 47.619 21.47 13.93 0.00 2.92
2006 2312 0.179089 ACATCCTGTGAGCTCATCGC 60.179 55.000 21.47 7.85 39.00 4.58
2028 2334 9.751542 ATCGCTCTACATAATAATAATACCAGC 57.248 33.333 0.00 0.00 0.00 4.85
2030 2336 9.587772 CGCTCTACATAATAATAATACCAGCTT 57.412 33.333 0.00 0.00 0.00 3.74
2045 2351 1.285023 GCTTGTGCTCAGCTTGGTG 59.715 57.895 0.00 0.00 36.03 4.17
2046 2352 1.285023 CTTGTGCTCAGCTTGGTGC 59.715 57.895 0.00 0.00 43.29 5.01
2068 2374 5.762045 GCTCACAAGCTGTTTTATCTGAAA 58.238 37.500 0.00 0.00 45.55 2.69
2069 2375 6.385033 GCTCACAAGCTGTTTTATCTGAAAT 58.615 36.000 0.00 0.00 45.55 2.17
2070 2376 7.530010 GCTCACAAGCTGTTTTATCTGAAATA 58.470 34.615 0.00 0.00 45.55 1.40
2073 2379 9.677567 TCACAAGCTGTTTTATCTGAAATAAAC 57.322 29.630 0.00 0.00 0.00 2.01
2075 2381 8.860088 ACAAGCTGTTTTATCTGAAATAAACCT 58.140 29.630 0.00 0.00 31.25 3.50
2076 2382 9.346725 CAAGCTGTTTTATCTGAAATAAACCTC 57.653 33.333 0.00 0.00 31.25 3.85
2077 2383 8.635765 AGCTGTTTTATCTGAAATAAACCTCA 57.364 30.769 0.00 0.00 31.25 3.86
2078 2384 9.247861 AGCTGTTTTATCTGAAATAAACCTCAT 57.752 29.630 0.00 0.00 31.25 2.90
2088 2394 9.113838 TCTGAAATAAACCTCATAAGATCAAGC 57.886 33.333 0.00 0.00 0.00 4.01
2089 2395 7.919690 TGAAATAAACCTCATAAGATCAAGCG 58.080 34.615 0.00 0.00 0.00 4.68
2090 2396 7.768582 TGAAATAAACCTCATAAGATCAAGCGA 59.231 33.333 0.00 0.00 0.00 4.93
2092 2398 4.744795 AACCTCATAAGATCAAGCGAGT 57.255 40.909 0.00 0.00 0.00 4.18
2093 2399 4.052159 ACCTCATAAGATCAAGCGAGTG 57.948 45.455 0.00 0.00 0.00 3.51
2094 2400 2.799412 CCTCATAAGATCAAGCGAGTGC 59.201 50.000 0.00 0.00 43.24 4.40
2104 2410 4.991760 GCGAGTGCTCATCATTGC 57.008 55.556 0.00 0.00 38.39 3.56
2105 2411 2.092374 GCGAGTGCTCATCATTGCA 58.908 52.632 0.00 0.00 38.39 4.08
2110 2416 2.186155 TGCTCATCATTGCACAGGC 58.814 52.632 0.00 0.00 41.68 4.85
2125 2431 5.077134 GCACAGGCATTTTAAGGAAATCT 57.923 39.130 0.00 0.00 40.72 2.40
2127 2433 6.630071 GCACAGGCATTTTAAGGAAATCTTA 58.370 36.000 0.00 0.00 40.72 2.10
2129 2435 7.765819 GCACAGGCATTTTAAGGAAATCTTATT 59.234 33.333 0.00 0.00 37.61 1.40
2132 2438 9.657419 CAGGCATTTTAAGGAAATCTTATTTGT 57.343 29.630 0.00 0.00 37.74 2.83
2148 2454 8.099364 TCTTATTTGTTTCAGTCAATCTCCAC 57.901 34.615 0.00 0.00 0.00 4.02
2149 2455 7.719193 TCTTATTTGTTTCAGTCAATCTCCACA 59.281 33.333 0.00 0.00 0.00 4.17
2151 2457 5.756195 TTGTTTCAGTCAATCTCCACAAG 57.244 39.130 0.00 0.00 0.00 3.16
2152 2458 5.034852 TGTTTCAGTCAATCTCCACAAGA 57.965 39.130 0.00 0.00 38.72 3.02
2154 2460 5.702670 TGTTTCAGTCAATCTCCACAAGATC 59.297 40.000 0.00 0.00 44.26 2.75
2155 2461 4.478206 TCAGTCAATCTCCACAAGATCC 57.522 45.455 0.00 0.00 44.26 3.36
2156 2462 4.099633 TCAGTCAATCTCCACAAGATCCT 58.900 43.478 0.00 0.00 44.26 3.24
2157 2463 4.161189 TCAGTCAATCTCCACAAGATCCTC 59.839 45.833 0.00 0.00 44.26 3.71
2158 2464 3.454082 AGTCAATCTCCACAAGATCCTCC 59.546 47.826 0.00 0.00 44.26 4.30
2159 2465 3.198635 GTCAATCTCCACAAGATCCTCCA 59.801 47.826 0.00 0.00 44.26 3.86
2160 2466 4.042884 TCAATCTCCACAAGATCCTCCAT 58.957 43.478 0.00 0.00 44.26 3.41
2161 2467 4.135306 CAATCTCCACAAGATCCTCCATG 58.865 47.826 0.00 0.00 44.26 3.66
2163 2469 3.994317 TCTCCACAAGATCCTCCATGTA 58.006 45.455 0.00 0.00 0.00 2.29
2165 2471 4.971282 TCTCCACAAGATCCTCCATGTAAT 59.029 41.667 0.00 0.00 0.00 1.89
2167 2473 6.069440 TCTCCACAAGATCCTCCATGTAATTT 60.069 38.462 0.00 0.00 0.00 1.82
2168 2474 6.122277 TCCACAAGATCCTCCATGTAATTTC 58.878 40.000 0.00 0.00 0.00 2.17
2169 2475 5.887598 CCACAAGATCCTCCATGTAATTTCA 59.112 40.000 0.00 0.00 0.00 2.69
2171 2477 7.093814 CCACAAGATCCTCCATGTAATTTCAAA 60.094 37.037 0.00 0.00 0.00 2.69
2173 2479 6.705863 AGATCCTCCATGTAATTTCAAAGC 57.294 37.500 0.00 0.00 0.00 3.51
2174 2480 6.189859 AGATCCTCCATGTAATTTCAAAGCA 58.810 36.000 0.00 0.00 0.00 3.91
2175 2481 6.664816 AGATCCTCCATGTAATTTCAAAGCAA 59.335 34.615 0.00 0.00 0.00 3.91
2176 2482 6.662865 TCCTCCATGTAATTTCAAAGCAAA 57.337 33.333 0.00 0.00 0.00 3.68
2178 2484 7.322664 TCCTCCATGTAATTTCAAAGCAAATC 58.677 34.615 0.00 0.00 0.00 2.17
2179 2485 7.039152 TCCTCCATGTAATTTCAAAGCAAATCA 60.039 33.333 0.00 0.00 0.00 2.57
2181 2487 8.481974 TCCATGTAATTTCAAAGCAAATCATG 57.518 30.769 0.00 0.00 32.65 3.07
2187 2493 9.749490 GTAATTTCAAAGCAAATCATGTGAATG 57.251 29.630 0.00 0.00 0.00 2.67
2188 2494 8.610248 AATTTCAAAGCAAATCATGTGAATGA 57.390 26.923 0.00 0.00 34.73 2.57
2189 2495 7.646446 TTTCAAAGCAAATCATGTGAATGAG 57.354 32.000 0.00 0.00 33.59 2.90
2190 2496 6.578163 TCAAAGCAAATCATGTGAATGAGA 57.422 33.333 0.00 0.00 33.59 3.27
2191 2497 7.165460 TCAAAGCAAATCATGTGAATGAGAT 57.835 32.000 0.00 0.00 33.59 2.75
2192 2498 7.033185 TCAAAGCAAATCATGTGAATGAGATG 58.967 34.615 0.00 0.00 33.59 2.90
2193 2499 6.769134 AAGCAAATCATGTGAATGAGATGA 57.231 33.333 0.00 0.00 38.64 2.92
2194 2500 6.961360 AGCAAATCATGTGAATGAGATGAT 57.039 33.333 0.00 0.00 44.93 2.45
2200 2506 6.920569 TCATGTGAATGAGATGATTGACTG 57.079 37.500 0.00 0.00 29.46 3.51
2201 2507 6.646267 TCATGTGAATGAGATGATTGACTGA 58.354 36.000 0.00 0.00 29.46 3.41
2203 2509 7.608761 TCATGTGAATGAGATGATTGACTGAAA 59.391 33.333 0.00 0.00 29.46 2.69
2204 2510 7.137490 TGTGAATGAGATGATTGACTGAAAC 57.863 36.000 0.00 0.00 0.00 2.78
2205 2511 6.938596 TGTGAATGAGATGATTGACTGAAACT 59.061 34.615 0.00 0.00 0.00 2.66
2206 2512 7.446319 TGTGAATGAGATGATTGACTGAAACTT 59.554 33.333 0.00 0.00 0.00 2.66
2207 2513 8.939929 GTGAATGAGATGATTGACTGAAACTTA 58.060 33.333 0.00 0.00 0.00 2.24
2208 2514 9.506018 TGAATGAGATGATTGACTGAAACTTAA 57.494 29.630 0.00 0.00 0.00 1.85
2210 2516 7.912056 TGAGATGATTGACTGAAACTTAAGG 57.088 36.000 7.53 0.00 0.00 2.69
2211 2517 7.453393 TGAGATGATTGACTGAAACTTAAGGT 58.547 34.615 7.53 0.00 0.00 3.50
2212 2518 7.939039 TGAGATGATTGACTGAAACTTAAGGTT 59.061 33.333 5.17 5.17 40.28 3.50
2214 2520 9.136323 AGATGATTGACTGAAACTTAAGGTTTT 57.864 29.630 7.31 0.00 46.77 2.43
2223 2529 7.706100 TGAAACTTAAGGTTTTAGGTGTTGT 57.294 32.000 7.31 0.00 46.77 3.32
2225 2531 8.676401 TGAAACTTAAGGTTTTAGGTGTTGTAC 58.324 33.333 7.31 0.00 46.77 2.90
2226 2532 8.578448 AAACTTAAGGTTTTAGGTGTTGTACA 57.422 30.769 7.53 0.00 44.77 2.90
2227 2533 8.756486 AACTTAAGGTTTTAGGTGTTGTACAT 57.244 30.769 7.53 0.00 33.90 2.29
2231 2537 6.812879 AGGTTTTAGGTGTTGTACATTAGC 57.187 37.500 0.00 0.00 0.00 3.09
2234 2540 7.285858 AGGTTTTAGGTGTTGTACATTAGCAAA 59.714 33.333 0.00 0.74 0.00 3.68
2236 2542 9.124807 GTTTTAGGTGTTGTACATTAGCAAATC 57.875 33.333 0.00 0.01 0.00 2.17
2238 2544 6.500684 AGGTGTTGTACATTAGCAAATCTG 57.499 37.500 0.00 0.00 0.00 2.90
2239 2545 6.003950 AGGTGTTGTACATTAGCAAATCTGT 58.996 36.000 0.00 0.00 0.00 3.41
2241 2547 7.663905 AGGTGTTGTACATTAGCAAATCTGTAA 59.336 33.333 0.00 0.00 0.00 2.41
2261 2567 6.802608 TGTAAGATACATGAAACTAGACGGG 58.197 40.000 0.00 0.00 32.89 5.28
2262 2568 4.939052 AGATACATGAAACTAGACGGGG 57.061 45.455 0.00 0.00 0.00 5.73
2264 2570 0.981183 ACATGAAACTAGACGGGGCA 59.019 50.000 0.00 0.00 0.00 5.36
2266 2572 2.224670 ACATGAAACTAGACGGGGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
2267 2573 2.178912 TGAAACTAGACGGGGCAAAG 57.821 50.000 0.00 0.00 0.00 2.77
2268 2574 1.418637 TGAAACTAGACGGGGCAAAGT 59.581 47.619 0.00 0.00 0.00 2.66
2269 2575 2.158726 TGAAACTAGACGGGGCAAAGTT 60.159 45.455 0.00 0.00 31.94 2.66
2270 2576 2.651382 AACTAGACGGGGCAAAGTTT 57.349 45.000 0.00 0.00 0.00 2.66
2271 2577 2.651382 ACTAGACGGGGCAAAGTTTT 57.349 45.000 0.00 0.00 0.00 2.43
2275 2581 1.029681 GACGGGGCAAAGTTTTGTCT 58.970 50.000 8.86 0.00 42.20 3.41
2277 2583 1.407618 ACGGGGCAAAGTTTTGTCTTC 59.592 47.619 8.86 2.25 42.20 2.87
2278 2584 1.269569 CGGGGCAAAGTTTTGTCTTCC 60.270 52.381 8.86 2.59 42.20 3.46
2279 2585 2.039418 GGGGCAAAGTTTTGTCTTCCT 58.961 47.619 8.86 0.00 42.20 3.36
2280 2586 2.434336 GGGGCAAAGTTTTGTCTTCCTT 59.566 45.455 8.86 0.00 42.20 3.36
2282 2588 4.119862 GGGCAAAGTTTTGTCTTCCTTTC 58.880 43.478 8.86 0.00 42.20 2.62
2283 2589 4.119862 GGCAAAGTTTTGTCTTCCTTTCC 58.880 43.478 6.48 0.00 39.57 3.13
2284 2590 4.141937 GGCAAAGTTTTGTCTTCCTTTCCT 60.142 41.667 6.48 0.00 39.57 3.36
2285 2591 5.419542 GCAAAGTTTTGTCTTCCTTTCCTT 58.580 37.500 6.48 0.00 40.24 3.36
2286 2592 5.874810 GCAAAGTTTTGTCTTCCTTTCCTTT 59.125 36.000 6.48 0.00 40.24 3.11
2288 2594 7.413000 GCAAAGTTTTGTCTTCCTTTCCTTTTC 60.413 37.037 6.48 0.00 40.24 2.29
2290 2596 5.417894 AGTTTTGTCTTCCTTTCCTTTTCGT 59.582 36.000 0.00 0.00 0.00 3.85
2291 2597 5.907866 TTTGTCTTCCTTTCCTTTTCGTT 57.092 34.783 0.00 0.00 0.00 3.85
2292 2598 5.907866 TTGTCTTCCTTTCCTTTTCGTTT 57.092 34.783 0.00 0.00 0.00 3.60
2293 2599 5.494632 TGTCTTCCTTTCCTTTTCGTTTC 57.505 39.130 0.00 0.00 0.00 2.78
2295 2601 5.296035 TGTCTTCCTTTCCTTTTCGTTTCTC 59.704 40.000 0.00 0.00 0.00 2.87
2297 2603 6.017026 GTCTTCCTTTCCTTTTCGTTTCTCAT 60.017 38.462 0.00 0.00 0.00 2.90
2299 2605 6.709018 TCCTTTCCTTTTCGTTTCTCATTT 57.291 33.333 0.00 0.00 0.00 2.32
2300 2606 7.107639 TCCTTTCCTTTTCGTTTCTCATTTT 57.892 32.000 0.00 0.00 0.00 1.82
2301 2607 7.552459 TCCTTTCCTTTTCGTTTCTCATTTTT 58.448 30.769 0.00 0.00 0.00 1.94
2304 2610 9.730420 CTTTCCTTTTCGTTTCTCATTTTTCTA 57.270 29.630 0.00 0.00 0.00 2.10
2308 2614 7.591426 CCTTTTCGTTTCTCATTTTTCTACTGG 59.409 37.037 0.00 0.00 0.00 4.00
2309 2615 6.554334 TTCGTTTCTCATTTTTCTACTGGG 57.446 37.500 0.00 0.00 0.00 4.45
2311 2617 6.472887 TCGTTTCTCATTTTTCTACTGGGAT 58.527 36.000 0.00 0.00 0.00 3.85
2312 2618 6.371548 TCGTTTCTCATTTTTCTACTGGGATG 59.628 38.462 0.00 0.00 0.00 3.51
2313 2619 6.403636 CGTTTCTCATTTTTCTACTGGGATGG 60.404 42.308 0.00 0.00 0.00 3.51
2316 2622 4.272489 TCATTTTTCTACTGGGATGGCAG 58.728 43.478 0.00 0.00 0.00 4.85
2317 2623 4.018506 TCATTTTTCTACTGGGATGGCAGA 60.019 41.667 0.00 0.00 0.00 4.26
2318 2624 3.350219 TTTTCTACTGGGATGGCAGAC 57.650 47.619 0.00 0.00 0.00 3.51
2319 2625 2.254152 TTCTACTGGGATGGCAGACT 57.746 50.000 0.00 0.00 0.00 3.24
2320 2626 1.489481 TCTACTGGGATGGCAGACTG 58.511 55.000 0.00 0.00 0.00 3.51
2321 2627 0.179062 CTACTGGGATGGCAGACTGC 60.179 60.000 19.55 19.55 44.08 4.40
2334 2640 3.600388 GCAGACTGCACCTTAGTATGTT 58.400 45.455 22.62 0.00 44.26 2.71
2335 2641 4.003648 GCAGACTGCACCTTAGTATGTTT 58.996 43.478 22.62 0.00 44.26 2.83
2336 2642 4.142816 GCAGACTGCACCTTAGTATGTTTG 60.143 45.833 22.62 0.00 44.26 2.93
2338 2644 5.470098 CAGACTGCACCTTAGTATGTTTGTT 59.530 40.000 0.00 0.00 33.82 2.83
2339 2645 5.701290 AGACTGCACCTTAGTATGTTTGTTC 59.299 40.000 0.00 0.00 0.00 3.18
2340 2646 5.621193 ACTGCACCTTAGTATGTTTGTTCT 58.379 37.500 0.00 0.00 0.00 3.01
2341 2647 6.062095 ACTGCACCTTAGTATGTTTGTTCTT 58.938 36.000 0.00 0.00 0.00 2.52
2342 2648 6.017109 ACTGCACCTTAGTATGTTTGTTCTTG 60.017 38.462 0.00 0.00 0.00 3.02
2343 2649 5.154222 GCACCTTAGTATGTTTGTTCTTGC 58.846 41.667 0.00 0.00 0.00 4.01
2345 2651 6.148811 GCACCTTAGTATGTTTGTTCTTGCTA 59.851 38.462 0.00 0.00 0.00 3.49
2346 2652 7.519002 CACCTTAGTATGTTTGTTCTTGCTAC 58.481 38.462 0.00 0.00 0.00 3.58
2347 2653 6.653740 ACCTTAGTATGTTTGTTCTTGCTACC 59.346 38.462 0.00 0.00 0.00 3.18
2348 2654 6.653320 CCTTAGTATGTTTGTTCTTGCTACCA 59.347 38.462 0.00 0.00 0.00 3.25
2349 2655 7.174253 CCTTAGTATGTTTGTTCTTGCTACCAA 59.826 37.037 0.00 0.00 0.00 3.67
2350 2656 6.313744 AGTATGTTTGTTCTTGCTACCAAC 57.686 37.500 0.00 0.00 0.00 3.77
2351 2657 5.825679 AGTATGTTTGTTCTTGCTACCAACA 59.174 36.000 0.00 0.00 36.15 3.33
2445 5713 2.995466 CACGAATGTGCCAATTCTGT 57.005 45.000 0.00 4.43 39.67 3.41
2759 6036 4.522022 AGATCTGCTTTCCAAGTTCAAAGG 59.478 41.667 0.00 0.00 31.33 3.11
2807 6112 0.729116 CGCAGATGTGATCGCCTTTT 59.271 50.000 3.31 0.00 0.00 2.27
2821 6126 3.230743 GCCTTTTTGACAATATGGCGT 57.769 42.857 16.14 0.00 0.00 5.68
2858 6163 2.203394 CACCTGGCAGTGGCTGTT 60.203 61.111 18.53 2.65 40.87 3.16
2883 6188 4.967437 TGTTGTTTTTGTTTTGATGCTGC 58.033 34.783 0.00 0.00 0.00 5.25
2893 6198 4.151798 GTTTTGATGCTGCGTCTAGTTTC 58.848 43.478 21.36 5.33 0.00 2.78
3013 6385 1.302752 TTGCTGACAAGATGGCGCT 60.303 52.632 7.64 0.00 0.00 5.92
3077 6456 4.887071 TGTTGTCCTTGTTTTCATGCTACT 59.113 37.500 0.00 0.00 0.00 2.57
3160 6543 8.298854 CAATGAATTTACAGTTCCAGTCAATCA 58.701 33.333 0.00 0.00 0.00 2.57
3228 6617 7.588512 TCAACTGTATCAGATATGACGATGAG 58.411 38.462 0.00 0.00 35.18 2.90
3234 6623 2.560105 CAGATATGACGATGAGCCTGGA 59.440 50.000 0.00 0.00 0.00 3.86
3250 6640 2.487934 CTGGACAGGTGAAGTTGACAG 58.512 52.381 0.00 0.00 0.00 3.51
3259 6650 2.096819 GTGAAGTTGACAGGTGCGAAAA 59.903 45.455 0.00 0.00 0.00 2.29
3473 6868 1.307097 GGTCCTCAGATTGATGCAGC 58.693 55.000 0.00 0.00 0.00 5.25
3602 6997 4.194720 CTCGTTCCCCTCGCCGAG 62.195 72.222 7.25 7.25 40.54 4.63
3678 7073 0.398318 AAAGAGTTCGGCTGCCTTCT 59.602 50.000 17.92 11.58 0.00 2.85
3679 7074 1.267121 AAGAGTTCGGCTGCCTTCTA 58.733 50.000 17.92 0.00 0.00 2.10
3686 7081 0.179097 CGGCTGCCTTCTACTTCTCC 60.179 60.000 17.92 0.00 0.00 3.71
3688 7083 1.557371 GGCTGCCTTCTACTTCTCCTT 59.443 52.381 12.43 0.00 0.00 3.36
3689 7084 2.626840 GCTGCCTTCTACTTCTCCTTG 58.373 52.381 0.00 0.00 0.00 3.61
3695 7090 3.368948 CCTTCTACTTCTCCTTGAGCACC 60.369 52.174 0.00 0.00 0.00 5.01
3707 7102 0.322366 TGAGCACCGATCAATGGCAA 60.322 50.000 0.00 0.00 0.00 4.52
3715 7110 0.815734 GATCAATGGCAAGCTGCTGT 59.184 50.000 1.35 0.00 44.28 4.40
3717 7112 1.167851 TCAATGGCAAGCTGCTGTAC 58.832 50.000 1.35 0.00 44.28 2.90
3719 7114 0.038744 AATGGCAAGCTGCTGTACCT 59.961 50.000 1.35 0.00 44.28 3.08
3728 7123 5.428253 CAAGCTGCTGTACCTAAGGATTTA 58.572 41.667 1.35 0.00 0.00 1.40
3730 7125 6.062258 AGCTGCTGTACCTAAGGATTTAAA 57.938 37.500 0.00 0.00 0.00 1.52
3741 7136 6.099701 ACCTAAGGATTTAAATGATTTGGCCC 59.900 38.462 5.17 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.253810 TCTTTTCTTATCTCCAGTATGAGTGTG 58.746 37.037 0.00 0.00 39.69 3.82
1 2 8.367660 TCTTTTCTTATCTCCAGTATGAGTGT 57.632 34.615 0.00 0.00 39.69 3.55
2 3 7.437862 GCTCTTTTCTTATCTCCAGTATGAGTG 59.562 40.741 0.00 0.00 39.69 3.51
5 6 6.384015 TGGCTCTTTTCTTATCTCCAGTATGA 59.616 38.462 0.00 0.00 39.69 2.15
6 7 6.586344 TGGCTCTTTTCTTATCTCCAGTATG 58.414 40.000 0.00 0.00 0.00 2.39
7 8 6.687647 GCTGGCTCTTTTCTTATCTCCAGTAT 60.688 42.308 0.00 0.00 41.26 2.12
8 9 5.395768 GCTGGCTCTTTTCTTATCTCCAGTA 60.396 44.000 0.00 0.00 41.26 2.74
9 10 4.625083 GCTGGCTCTTTTCTTATCTCCAGT 60.625 45.833 0.00 0.00 41.26 4.00
10 11 3.876320 GCTGGCTCTTTTCTTATCTCCAG 59.124 47.826 0.00 0.00 41.90 3.86
11 12 3.264193 TGCTGGCTCTTTTCTTATCTCCA 59.736 43.478 0.00 0.00 0.00 3.86
12 13 3.878778 TGCTGGCTCTTTTCTTATCTCC 58.121 45.455 0.00 0.00 0.00 3.71
13 14 4.201763 CGTTGCTGGCTCTTTTCTTATCTC 60.202 45.833 0.00 0.00 0.00 2.75
14 15 3.686726 CGTTGCTGGCTCTTTTCTTATCT 59.313 43.478 0.00 0.00 0.00 1.98
15 16 3.437049 ACGTTGCTGGCTCTTTTCTTATC 59.563 43.478 0.00 0.00 0.00 1.75
16 17 3.412386 ACGTTGCTGGCTCTTTTCTTAT 58.588 40.909 0.00 0.00 0.00 1.73
17 18 2.846193 ACGTTGCTGGCTCTTTTCTTA 58.154 42.857 0.00 0.00 0.00 2.10
18 19 1.680338 ACGTTGCTGGCTCTTTTCTT 58.320 45.000 0.00 0.00 0.00 2.52
19 20 1.680338 AACGTTGCTGGCTCTTTTCT 58.320 45.000 0.00 0.00 0.00 2.52
20 21 2.492019 AAACGTTGCTGGCTCTTTTC 57.508 45.000 0.00 0.00 0.00 2.29
21 22 2.094234 ACAAAACGTTGCTGGCTCTTTT 60.094 40.909 0.00 0.00 38.39 2.27
23 24 1.102978 ACAAAACGTTGCTGGCTCTT 58.897 45.000 0.00 0.00 38.39 2.85
24 25 1.602377 GTACAAAACGTTGCTGGCTCT 59.398 47.619 0.00 0.00 38.39 4.09
25 26 1.602377 AGTACAAAACGTTGCTGGCTC 59.398 47.619 0.00 0.00 38.39 4.70
26 27 1.675552 AGTACAAAACGTTGCTGGCT 58.324 45.000 0.00 3.21 38.39 4.75
27 28 2.485266 AAGTACAAAACGTTGCTGGC 57.515 45.000 0.00 0.92 38.39 4.85
29 30 4.026310 ACTCGTAAGTACAAAACGTTGCTG 60.026 41.667 0.00 5.25 37.07 4.41
31 32 4.026640 TCACTCGTAAGTACAAAACGTTGC 60.027 41.667 0.00 0.00 33.82 4.17
33 34 6.311200 ACTTTCACTCGTAAGTACAAAACGTT 59.689 34.615 12.42 0.00 37.83 3.99
35 36 6.264909 ACTTTCACTCGTAAGTACAAAACG 57.735 37.500 7.97 7.97 31.64 3.60
36 37 7.043192 TGCTACTTTCACTCGTAAGTACAAAAC 60.043 37.037 0.00 0.00 34.85 2.43
37 38 6.979817 TGCTACTTTCACTCGTAAGTACAAAA 59.020 34.615 0.00 0.00 34.85 2.44
38 39 6.418819 GTGCTACTTTCACTCGTAAGTACAAA 59.581 38.462 0.00 0.00 34.85 2.83
39 40 5.916883 GTGCTACTTTCACTCGTAAGTACAA 59.083 40.000 0.00 0.00 34.85 2.41
41 42 4.855937 GGTGCTACTTTCACTCGTAAGTAC 59.144 45.833 0.00 0.00 34.85 2.73
42 43 4.520111 TGGTGCTACTTTCACTCGTAAGTA 59.480 41.667 0.00 0.00 34.85 2.24
43 44 3.319972 TGGTGCTACTTTCACTCGTAAGT 59.680 43.478 0.00 0.00 36.75 2.24
47 48 2.902705 TTGGTGCTACTTTCACTCGT 57.097 45.000 0.00 0.00 34.97 4.18
48 49 3.589988 AGATTGGTGCTACTTTCACTCG 58.410 45.455 0.00 0.00 34.97 4.18
50 51 4.623932 TGAGATTGGTGCTACTTTCACT 57.376 40.909 0.00 0.00 34.97 3.41
51 52 4.515191 TGTTGAGATTGGTGCTACTTTCAC 59.485 41.667 0.00 0.00 0.00 3.18
52 53 4.713553 TGTTGAGATTGGTGCTACTTTCA 58.286 39.130 0.00 0.00 0.00 2.69
53 54 4.378874 GCTGTTGAGATTGGTGCTACTTTC 60.379 45.833 0.00 0.00 0.00 2.62
54 55 3.503748 GCTGTTGAGATTGGTGCTACTTT 59.496 43.478 0.00 0.00 0.00 2.66
55 56 3.077359 GCTGTTGAGATTGGTGCTACTT 58.923 45.455 0.00 0.00 0.00 2.24
56 57 2.038952 TGCTGTTGAGATTGGTGCTACT 59.961 45.455 0.00 0.00 0.00 2.57
57 58 2.160417 GTGCTGTTGAGATTGGTGCTAC 59.840 50.000 0.00 0.00 0.00 3.58
58 59 2.426522 GTGCTGTTGAGATTGGTGCTA 58.573 47.619 0.00 0.00 0.00 3.49
62 63 1.237285 GCGGTGCTGTTGAGATTGGT 61.237 55.000 0.00 0.00 0.00 3.67
65 66 2.034879 CGGCGGTGCTGTTGAGATT 61.035 57.895 0.00 0.00 0.00 2.40
103 104 2.333225 CGAGATCGGAAGCGGAGG 59.667 66.667 0.00 0.00 35.37 4.30
180 181 0.477204 GGGGAAAGTGGTATAGGCCC 59.523 60.000 0.00 0.00 0.00 5.80
193 194 1.051556 GGCAAAGTGGTTGGGGGAAA 61.052 55.000 0.00 0.00 37.73 3.13
328 348 4.194720 CGAGTCGGCGGAAGGAGG 62.195 72.222 7.21 0.00 0.00 4.30
355 375 2.691674 GAAGCGGCGGAGGAGAGATG 62.692 65.000 9.78 0.00 0.00 2.90
399 419 2.347490 GCACTGGAGGAAGCCGAA 59.653 61.111 0.00 0.00 0.00 4.30
417 437 2.438434 GGCAGGATGGAACCCGTG 60.438 66.667 0.00 0.00 35.86 4.94
753 848 4.607239 AGCCATCCAGATGACTTTGAATT 58.393 39.130 9.24 0.00 41.20 2.17
924 1027 5.468072 CCAGTAGAAGCAACCATAAGCATAG 59.532 44.000 0.00 0.00 0.00 2.23
1031 1140 5.643777 CCTACACCTTTTGTACTCCAATCTG 59.356 44.000 0.00 0.00 39.91 2.90
1347 1482 1.117150 GTGTCCCATACCTAGGCGAA 58.883 55.000 9.30 0.00 0.00 4.70
1460 1595 7.852945 GCATTAGACAAGCTGTGTGATAATTAC 59.147 37.037 6.31 3.71 41.96 1.89
1670 1815 0.807667 GCGATTCCATCAGCACTCGT 60.808 55.000 0.00 0.00 0.00 4.18
1671 1816 1.493950 GGCGATTCCATCAGCACTCG 61.494 60.000 0.00 0.00 32.91 4.18
1674 1819 0.810648 TTTGGCGATTCCATCAGCAC 59.189 50.000 0.00 0.00 46.04 4.40
1676 1821 2.652941 TTTTTGGCGATTCCATCAGC 57.347 45.000 0.00 0.00 46.04 4.26
1712 1857 9.700831 ACCATCAAAGCTACTCCTTAAAATAAT 57.299 29.630 0.00 0.00 0.00 1.28
1713 1858 9.174166 GACCATCAAAGCTACTCCTTAAAATAA 57.826 33.333 0.00 0.00 0.00 1.40
1715 1860 7.175104 TGACCATCAAAGCTACTCCTTAAAAT 58.825 34.615 0.00 0.00 0.00 1.82
1716 1861 6.539173 TGACCATCAAAGCTACTCCTTAAAA 58.461 36.000 0.00 0.00 0.00 1.52
1717 1862 6.121776 TGACCATCAAAGCTACTCCTTAAA 57.878 37.500 0.00 0.00 0.00 1.52
1720 1865 4.566488 CCTTGACCATCAAAGCTACTCCTT 60.566 45.833 0.00 0.00 35.73 3.36
1722 1867 3.274288 CCTTGACCATCAAAGCTACTCC 58.726 50.000 0.00 0.00 35.73 3.85
1723 1868 3.944087 ACCTTGACCATCAAAGCTACTC 58.056 45.455 0.00 0.00 35.73 2.59
1724 1869 5.499004 TTACCTTGACCATCAAAGCTACT 57.501 39.130 0.00 0.00 35.73 2.57
1725 1870 5.392057 GCTTTACCTTGACCATCAAAGCTAC 60.392 44.000 9.05 0.00 42.72 3.58
1727 1872 3.507622 GCTTTACCTTGACCATCAAAGCT 59.492 43.478 9.05 0.00 42.72 3.74
1729 1874 4.761739 TCTGCTTTACCTTGACCATCAAAG 59.238 41.667 0.00 0.00 35.73 2.77
1740 1885 6.431234 CACTTGTAATCCTTCTGCTTTACCTT 59.569 38.462 0.00 0.00 0.00 3.50
1742 1887 5.705905 ACACTTGTAATCCTTCTGCTTTACC 59.294 40.000 0.00 0.00 0.00 2.85
1743 1888 6.803154 ACACTTGTAATCCTTCTGCTTTAC 57.197 37.500 0.00 0.00 0.00 2.01
1745 1890 7.817418 TTTACACTTGTAATCCTTCTGCTTT 57.183 32.000 2.71 0.00 39.89 3.51
1746 1891 7.817418 TTTTACACTTGTAATCCTTCTGCTT 57.183 32.000 2.71 0.00 39.89 3.91
1748 1893 8.915654 CAAATTTTACACTTGTAATCCTTCTGC 58.084 33.333 2.71 0.00 39.89 4.26
1749 1894 9.965824 ACAAATTTTACACTTGTAATCCTTCTG 57.034 29.630 2.71 0.63 39.89 3.02
1773 1918 7.776030 TCAAGGTGAAACAATCCTAACTAAACA 59.224 33.333 0.00 0.00 39.98 2.83
1923 2229 8.626526 TGACCTTAACAGTTATTCAGGTTTTTC 58.373 33.333 14.07 5.03 36.51 2.29
1924 2230 8.528044 TGACCTTAACAGTTATTCAGGTTTTT 57.472 30.769 14.07 0.00 36.51 1.94
1925 2231 8.576442 CATGACCTTAACAGTTATTCAGGTTTT 58.424 33.333 14.07 5.16 36.51 2.43
1927 2233 7.458397 TCATGACCTTAACAGTTATTCAGGTT 58.542 34.615 14.07 0.56 36.51 3.50
1929 2235 7.390440 TGTTCATGACCTTAACAGTTATTCAGG 59.610 37.037 7.70 7.70 0.00 3.86
1930 2236 8.322906 TGTTCATGACCTTAACAGTTATTCAG 57.677 34.615 0.00 0.00 0.00 3.02
1931 2237 8.684386 TTGTTCATGACCTTAACAGTTATTCA 57.316 30.769 0.00 0.00 34.80 2.57
1932 2238 8.999431 TCTTGTTCATGACCTTAACAGTTATTC 58.001 33.333 0.00 0.00 34.80 1.75
1933 2239 8.918202 TCTTGTTCATGACCTTAACAGTTATT 57.082 30.769 0.00 0.00 34.80 1.40
1935 2241 7.606456 GGATCTTGTTCATGACCTTAACAGTTA 59.394 37.037 0.00 0.00 34.80 2.24
1936 2242 6.431234 GGATCTTGTTCATGACCTTAACAGTT 59.569 38.462 0.00 0.00 34.80 3.16
1937 2243 5.940470 GGATCTTGTTCATGACCTTAACAGT 59.060 40.000 0.00 0.00 34.80 3.55
1939 2245 5.939883 CAGGATCTTGTTCATGACCTTAACA 59.060 40.000 0.00 0.00 29.04 2.41
1940 2246 6.173339 TCAGGATCTTGTTCATGACCTTAAC 58.827 40.000 4.57 0.00 31.96 2.01
1942 2248 5.485353 ACTCAGGATCTTGTTCATGACCTTA 59.515 40.000 4.57 0.00 33.30 2.69
1946 2252 4.629200 GTGACTCAGGATCTTGTTCATGAC 59.371 45.833 12.59 0.00 33.30 3.06
1947 2253 4.529769 AGTGACTCAGGATCTTGTTCATGA 59.470 41.667 12.59 0.00 35.36 3.07
1948 2254 4.630505 CAGTGACTCAGGATCTTGTTCATG 59.369 45.833 12.59 9.37 0.00 3.07
1950 2256 3.555795 GCAGTGACTCAGGATCTTGTTCA 60.556 47.826 4.57 6.30 0.00 3.18
1954 2260 2.496871 AGAGCAGTGACTCAGGATCTTG 59.503 50.000 14.37 0.00 39.26 3.02
1956 2262 2.530460 AGAGCAGTGACTCAGGATCT 57.470 50.000 14.37 0.00 39.26 2.75
1957 2263 4.727507 TTTAGAGCAGTGACTCAGGATC 57.272 45.455 14.37 0.00 39.26 3.36
1958 2264 5.690464 AATTTAGAGCAGTGACTCAGGAT 57.310 39.130 14.37 4.88 39.26 3.24
1959 2265 6.798427 ATAATTTAGAGCAGTGACTCAGGA 57.202 37.500 14.37 3.22 39.26 3.86
1960 2266 8.417106 TCTTATAATTTAGAGCAGTGACTCAGG 58.583 37.037 14.37 0.00 39.26 3.86
1963 2269 9.587772 TGTTCTTATAATTTAGAGCAGTGACTC 57.412 33.333 0.00 0.00 36.91 3.36
1966 2272 9.547753 GGATGTTCTTATAATTTAGAGCAGTGA 57.452 33.333 0.00 0.00 35.53 3.41
1982 2288 7.904257 GCGATGAGCTCACAGGATGTTCTTA 62.904 48.000 20.97 0.00 46.63 2.10
1984 2290 5.840722 GCGATGAGCTCACAGGATGTTCT 62.841 52.174 20.97 0.00 46.63 3.01
1985 2291 3.622045 GCGATGAGCTCACAGGATGTTC 61.622 54.545 20.97 9.11 46.63 3.18
1986 2292 1.741732 GCGATGAGCTCACAGGATGTT 60.742 52.381 20.97 0.00 46.63 2.71
1988 2294 2.602738 GCGATGAGCTCACAGGATG 58.397 57.895 20.97 6.45 44.04 3.51
2002 2308 9.751542 GCTGGTATTATTATTATGTAGAGCGAT 57.248 33.333 0.00 0.00 0.00 4.58
2003 2309 8.967918 AGCTGGTATTATTATTATGTAGAGCGA 58.032 33.333 0.00 0.00 0.00 4.93
2004 2310 9.587772 AAGCTGGTATTATTATTATGTAGAGCG 57.412 33.333 0.00 0.00 0.00 5.03
2027 2333 1.285023 CACCAAGCTGAGCACAAGC 59.715 57.895 7.39 0.00 42.56 4.01
2028 2334 1.285023 GCACCAAGCTGAGCACAAG 59.715 57.895 7.39 0.00 41.15 3.16
2046 2352 9.897744 TTTATTTCAGATAAAACAGCTTGTGAG 57.102 29.630 0.00 0.00 0.00 3.51
2048 2354 8.915654 GGTTTATTTCAGATAAAACAGCTTGTG 58.084 33.333 2.57 0.00 32.87 3.33
2049 2355 8.860088 AGGTTTATTTCAGATAAAACAGCTTGT 58.140 29.630 8.69 0.00 34.53 3.16
2051 2357 9.077885 TGAGGTTTATTTCAGATAAAACAGCTT 57.922 29.630 8.69 0.00 34.53 3.74
2052 2358 8.635765 TGAGGTTTATTTCAGATAAAACAGCT 57.364 30.769 8.69 0.00 34.53 4.24
2063 2369 8.066595 CGCTTGATCTTATGAGGTTTATTTCAG 58.933 37.037 0.00 0.00 0.00 3.02
2065 2371 8.142994 TCGCTTGATCTTATGAGGTTTATTTC 57.857 34.615 0.00 0.00 0.00 2.17
2066 2372 7.770897 ACTCGCTTGATCTTATGAGGTTTATTT 59.229 33.333 0.00 0.00 0.00 1.40
2068 2374 6.703607 CACTCGCTTGATCTTATGAGGTTTAT 59.296 38.462 0.00 0.00 0.00 1.40
2069 2375 6.042777 CACTCGCTTGATCTTATGAGGTTTA 58.957 40.000 0.00 0.00 0.00 2.01
2070 2376 4.872691 CACTCGCTTGATCTTATGAGGTTT 59.127 41.667 0.00 0.00 0.00 3.27
2073 2379 2.799412 GCACTCGCTTGATCTTATGAGG 59.201 50.000 0.00 0.00 34.30 3.86
2087 2393 2.092374 TGCAATGATGAGCACTCGC 58.908 52.632 0.00 0.00 35.51 5.03
2092 2398 0.609681 TGCCTGTGCAATGATGAGCA 60.610 50.000 0.00 0.00 46.66 4.26
2093 2399 2.186155 TGCCTGTGCAATGATGAGC 58.814 52.632 0.00 0.00 46.66 4.26
2102 2408 5.011943 AAGATTTCCTTAAAATGCCTGTGCA 59.988 36.000 0.00 0.00 42.20 4.57
2103 2409 5.077134 AGATTTCCTTAAAATGCCTGTGC 57.923 39.130 0.00 0.00 37.70 4.57
2104 2410 9.657419 AAATAAGATTTCCTTAAAATGCCTGTG 57.343 29.630 0.00 0.00 40.45 3.66
2105 2411 9.657419 CAAATAAGATTTCCTTAAAATGCCTGT 57.343 29.630 0.00 0.00 40.45 4.00
2106 2412 9.657419 ACAAATAAGATTTCCTTAAAATGCCTG 57.343 29.630 0.00 0.00 40.45 4.85
2121 2427 9.300681 TGGAGATTGACTGAAACAAATAAGATT 57.699 29.630 0.00 0.00 0.00 2.40
2122 2428 8.734386 GTGGAGATTGACTGAAACAAATAAGAT 58.266 33.333 0.00 0.00 0.00 2.40
2124 2430 7.874940 TGTGGAGATTGACTGAAACAAATAAG 58.125 34.615 0.00 0.00 0.00 1.73
2125 2431 7.815840 TGTGGAGATTGACTGAAACAAATAA 57.184 32.000 0.00 0.00 0.00 1.40
2127 2433 6.547141 TCTTGTGGAGATTGACTGAAACAAAT 59.453 34.615 0.00 0.00 0.00 2.32
2129 2435 5.436175 TCTTGTGGAGATTGACTGAAACAA 58.564 37.500 0.00 0.00 0.00 2.83
2132 2438 5.013495 AGGATCTTGTGGAGATTGACTGAAA 59.987 40.000 0.00 0.00 45.17 2.69
2133 2439 4.533707 AGGATCTTGTGGAGATTGACTGAA 59.466 41.667 0.00 0.00 45.17 3.02
2134 2440 4.099633 AGGATCTTGTGGAGATTGACTGA 58.900 43.478 0.00 0.00 45.17 3.41
2135 2441 4.440880 GAGGATCTTGTGGAGATTGACTG 58.559 47.826 0.00 0.00 45.17 3.51
2136 2442 3.454082 GGAGGATCTTGTGGAGATTGACT 59.546 47.826 0.00 0.00 45.17 3.41
2137 2443 3.198635 TGGAGGATCTTGTGGAGATTGAC 59.801 47.826 0.00 0.00 45.17 3.18
2138 2444 3.453868 TGGAGGATCTTGTGGAGATTGA 58.546 45.455 0.00 0.00 45.17 2.57
2139 2445 3.920231 TGGAGGATCTTGTGGAGATTG 57.080 47.619 0.00 0.00 45.17 2.67
2140 2446 3.784763 ACATGGAGGATCTTGTGGAGATT 59.215 43.478 0.00 0.00 45.17 2.40
2148 2454 6.976925 GCTTTGAAATTACATGGAGGATCTTG 59.023 38.462 0.00 0.00 33.73 3.02
2149 2455 6.664816 TGCTTTGAAATTACATGGAGGATCTT 59.335 34.615 0.00 0.00 33.73 2.40
2151 2457 6.455360 TGCTTTGAAATTACATGGAGGATC 57.545 37.500 0.00 0.00 0.00 3.36
2152 2458 6.855763 TTGCTTTGAAATTACATGGAGGAT 57.144 33.333 0.00 0.00 0.00 3.24
2153 2459 6.662865 TTTGCTTTGAAATTACATGGAGGA 57.337 33.333 0.00 0.00 0.00 3.71
2154 2460 7.098477 TGATTTGCTTTGAAATTACATGGAGG 58.902 34.615 0.00 0.00 0.00 4.30
2155 2461 8.600625 CATGATTTGCTTTGAAATTACATGGAG 58.399 33.333 0.00 0.00 30.80 3.86
2156 2462 8.095792 ACATGATTTGCTTTGAAATTACATGGA 58.904 29.630 0.00 0.00 34.68 3.41
2157 2463 8.172484 CACATGATTTGCTTTGAAATTACATGG 58.828 33.333 0.00 0.00 34.68 3.66
2158 2464 8.927721 TCACATGATTTGCTTTGAAATTACATG 58.072 29.630 0.00 0.00 35.57 3.21
2159 2465 9.491675 TTCACATGATTTGCTTTGAAATTACAT 57.508 25.926 0.00 0.00 0.00 2.29
2160 2466 8.883954 TTCACATGATTTGCTTTGAAATTACA 57.116 26.923 0.00 0.00 0.00 2.41
2161 2467 9.749490 CATTCACATGATTTGCTTTGAAATTAC 57.251 29.630 0.00 0.00 31.07 1.89
2163 2469 8.610248 TCATTCACATGATTTGCTTTGAAATT 57.390 26.923 0.00 0.00 34.22 1.82
2165 2471 7.435305 TCTCATTCACATGATTTGCTTTGAAA 58.565 30.769 0.00 0.00 38.81 2.69
2167 2473 6.578163 TCTCATTCACATGATTTGCTTTGA 57.422 33.333 0.00 0.00 38.81 2.69
2168 2474 7.033185 TCATCTCATTCACATGATTTGCTTTG 58.967 34.615 0.00 0.00 38.81 2.77
2169 2475 7.165460 TCATCTCATTCACATGATTTGCTTT 57.835 32.000 0.00 0.00 38.81 3.51
2171 2477 6.961360 ATCATCTCATTCACATGATTTGCT 57.039 33.333 0.00 0.00 38.81 3.91
2173 2479 8.406297 AGTCAATCATCTCATTCACATGATTTG 58.594 33.333 0.00 0.00 42.17 2.32
2174 2480 8.406297 CAGTCAATCATCTCATTCACATGATTT 58.594 33.333 0.00 0.00 42.17 2.17
2175 2481 7.773690 TCAGTCAATCATCTCATTCACATGATT 59.226 33.333 0.00 1.36 44.51 2.57
2176 2482 7.280356 TCAGTCAATCATCTCATTCACATGAT 58.720 34.615 0.00 0.00 38.81 2.45
2178 2484 6.920569 TCAGTCAATCATCTCATTCACATG 57.079 37.500 0.00 0.00 0.00 3.21
2179 2485 7.610692 AGTTTCAGTCAATCATCTCATTCACAT 59.389 33.333 0.00 0.00 0.00 3.21
2181 2487 7.375106 AGTTTCAGTCAATCATCTCATTCAC 57.625 36.000 0.00 0.00 0.00 3.18
2187 2493 7.913674 ACCTTAAGTTTCAGTCAATCATCTC 57.086 36.000 0.97 0.00 0.00 2.75
2188 2494 8.697507 AAACCTTAAGTTTCAGTCAATCATCT 57.302 30.769 0.97 0.00 45.85 2.90
2203 2509 8.756486 AATGTACAACACCTAAAACCTTAAGT 57.244 30.769 0.00 0.00 0.00 2.24
2205 2511 8.785946 GCTAATGTACAACACCTAAAACCTTAA 58.214 33.333 0.00 0.00 0.00 1.85
2206 2512 7.937942 TGCTAATGTACAACACCTAAAACCTTA 59.062 33.333 0.00 0.00 0.00 2.69
2207 2513 6.773685 TGCTAATGTACAACACCTAAAACCTT 59.226 34.615 0.00 0.00 0.00 3.50
2208 2514 6.300703 TGCTAATGTACAACACCTAAAACCT 58.699 36.000 0.00 0.00 0.00 3.50
2210 2516 9.124807 GATTTGCTAATGTACAACACCTAAAAC 57.875 33.333 0.00 0.00 0.00 2.43
2211 2517 9.073475 AGATTTGCTAATGTACAACACCTAAAA 57.927 29.630 0.00 0.00 0.00 1.52
2212 2518 8.511321 CAGATTTGCTAATGTACAACACCTAAA 58.489 33.333 0.00 0.00 0.00 1.85
2214 2520 7.165485 ACAGATTTGCTAATGTACAACACCTA 58.835 34.615 0.00 0.00 0.00 3.08
2216 2522 6.254281 ACAGATTTGCTAATGTACAACACC 57.746 37.500 0.00 0.00 0.00 4.16
2217 2523 8.717821 TCTTACAGATTTGCTAATGTACAACAC 58.282 33.333 0.00 0.00 0.00 3.32
2218 2524 8.840833 TCTTACAGATTTGCTAATGTACAACA 57.159 30.769 0.00 0.00 0.00 3.33
2234 2540 8.353684 CCGTCTAGTTTCATGTATCTTACAGAT 58.646 37.037 0.00 0.00 42.77 2.90
2236 2542 6.918569 CCCGTCTAGTTTCATGTATCTTACAG 59.081 42.308 0.00 0.00 42.77 2.74
2238 2544 6.214399 CCCCGTCTAGTTTCATGTATCTTAC 58.786 44.000 0.00 0.00 0.00 2.34
2239 2545 5.221382 GCCCCGTCTAGTTTCATGTATCTTA 60.221 44.000 0.00 0.00 0.00 2.10
2241 2547 3.069729 GCCCCGTCTAGTTTCATGTATCT 59.930 47.826 0.00 0.00 0.00 1.98
2243 2549 2.769663 TGCCCCGTCTAGTTTCATGTAT 59.230 45.455 0.00 0.00 0.00 2.29
2244 2550 2.181125 TGCCCCGTCTAGTTTCATGTA 58.819 47.619 0.00 0.00 0.00 2.29
2245 2551 0.981183 TGCCCCGTCTAGTTTCATGT 59.019 50.000 0.00 0.00 0.00 3.21
2246 2552 2.107950 TTGCCCCGTCTAGTTTCATG 57.892 50.000 0.00 0.00 0.00 3.07
2247 2553 2.039879 ACTTTGCCCCGTCTAGTTTCAT 59.960 45.455 0.00 0.00 0.00 2.57
2248 2554 1.418637 ACTTTGCCCCGTCTAGTTTCA 59.581 47.619 0.00 0.00 0.00 2.69
2249 2555 2.180432 ACTTTGCCCCGTCTAGTTTC 57.820 50.000 0.00 0.00 0.00 2.78
2251 2557 2.621526 CAAAACTTTGCCCCGTCTAGTT 59.378 45.455 0.00 0.00 0.00 2.24
2252 2558 2.227194 CAAAACTTTGCCCCGTCTAGT 58.773 47.619 0.00 0.00 0.00 2.57
2253 2559 2.225727 GACAAAACTTTGCCCCGTCTAG 59.774 50.000 2.07 0.00 41.79 2.43
2255 2561 1.029681 GACAAAACTTTGCCCCGTCT 58.970 50.000 2.07 0.00 41.79 4.18
2256 2562 1.029681 AGACAAAACTTTGCCCCGTC 58.970 50.000 2.07 0.00 41.79 4.79
2257 2563 1.407618 GAAGACAAAACTTTGCCCCGT 59.592 47.619 2.07 0.00 41.79 5.28
2258 2564 1.269569 GGAAGACAAAACTTTGCCCCG 60.270 52.381 2.07 0.00 41.79 5.73
2259 2565 2.039418 AGGAAGACAAAACTTTGCCCC 58.961 47.619 2.07 0.00 41.79 5.80
2261 2567 4.119862 GGAAAGGAAGACAAAACTTTGCC 58.880 43.478 2.07 0.00 41.79 4.52
2262 2568 5.011090 AGGAAAGGAAGACAAAACTTTGC 57.989 39.130 2.07 0.00 41.79 3.68
2264 2570 6.811665 CGAAAAGGAAAGGAAGACAAAACTTT 59.188 34.615 0.00 0.00 35.99 2.66
2266 2572 5.417894 ACGAAAAGGAAAGGAAGACAAAACT 59.582 36.000 0.00 0.00 0.00 2.66
2267 2573 5.647589 ACGAAAAGGAAAGGAAGACAAAAC 58.352 37.500 0.00 0.00 0.00 2.43
2268 2574 5.907866 ACGAAAAGGAAAGGAAGACAAAA 57.092 34.783 0.00 0.00 0.00 2.44
2269 2575 5.907866 AACGAAAAGGAAAGGAAGACAAA 57.092 34.783 0.00 0.00 0.00 2.83
2270 2576 5.650703 AGAAACGAAAAGGAAAGGAAGACAA 59.349 36.000 0.00 0.00 0.00 3.18
2271 2577 5.190677 AGAAACGAAAAGGAAAGGAAGACA 58.809 37.500 0.00 0.00 0.00 3.41
2275 2581 6.709018 AATGAGAAACGAAAAGGAAAGGAA 57.291 33.333 0.00 0.00 0.00 3.36
2277 2583 7.706607 AGAAAAATGAGAAACGAAAAGGAAAGG 59.293 33.333 0.00 0.00 0.00 3.11
2278 2584 8.634475 AGAAAAATGAGAAACGAAAAGGAAAG 57.366 30.769 0.00 0.00 0.00 2.62
2279 2585 9.511144 GTAGAAAAATGAGAAACGAAAAGGAAA 57.489 29.630 0.00 0.00 0.00 3.13
2280 2586 8.899771 AGTAGAAAAATGAGAAACGAAAAGGAA 58.100 29.630 0.00 0.00 0.00 3.36
2282 2588 7.591426 CCAGTAGAAAAATGAGAAACGAAAAGG 59.409 37.037 0.00 0.00 0.00 3.11
2283 2589 7.591426 CCCAGTAGAAAAATGAGAAACGAAAAG 59.409 37.037 0.00 0.00 0.00 2.27
2284 2590 7.283580 TCCCAGTAGAAAAATGAGAAACGAAAA 59.716 33.333 0.00 0.00 0.00 2.29
2285 2591 6.768861 TCCCAGTAGAAAAATGAGAAACGAAA 59.231 34.615 0.00 0.00 0.00 3.46
2286 2592 6.292923 TCCCAGTAGAAAAATGAGAAACGAA 58.707 36.000 0.00 0.00 0.00 3.85
2288 2594 6.403636 CCATCCCAGTAGAAAAATGAGAAACG 60.404 42.308 0.00 0.00 0.00 3.60
2290 2596 5.418840 GCCATCCCAGTAGAAAAATGAGAAA 59.581 40.000 0.00 0.00 0.00 2.52
2291 2597 4.949856 GCCATCCCAGTAGAAAAATGAGAA 59.050 41.667 0.00 0.00 0.00 2.87
2292 2598 4.018506 TGCCATCCCAGTAGAAAAATGAGA 60.019 41.667 0.00 0.00 0.00 3.27
2293 2599 4.272489 TGCCATCCCAGTAGAAAAATGAG 58.728 43.478 0.00 0.00 0.00 2.90
2295 2601 4.096984 GTCTGCCATCCCAGTAGAAAAATG 59.903 45.833 0.00 0.00 34.47 2.32
2297 2603 3.330701 AGTCTGCCATCCCAGTAGAAAAA 59.669 43.478 0.00 0.00 34.47 1.94
2299 2605 2.237143 CAGTCTGCCATCCCAGTAGAAA 59.763 50.000 0.00 0.00 34.47 2.52
2300 2606 1.833630 CAGTCTGCCATCCCAGTAGAA 59.166 52.381 0.00 0.00 34.47 2.10
2301 2607 1.489481 CAGTCTGCCATCCCAGTAGA 58.511 55.000 0.00 0.00 34.47 2.59
2304 2610 2.226315 TGCAGTCTGCCATCCCAGT 61.226 57.895 21.99 0.00 44.23 4.00
2308 2614 0.253044 TAAGGTGCAGTCTGCCATCC 59.747 55.000 21.99 19.36 44.23 3.51
2309 2615 1.065854 ACTAAGGTGCAGTCTGCCATC 60.066 52.381 21.99 10.42 44.23 3.51
2311 2617 1.639722 TACTAAGGTGCAGTCTGCCA 58.360 50.000 21.99 7.56 44.23 4.92
2312 2618 2.093447 ACATACTAAGGTGCAGTCTGCC 60.093 50.000 21.99 12.80 44.23 4.85
2313 2619 3.252974 ACATACTAAGGTGCAGTCTGC 57.747 47.619 18.32 18.32 45.29 4.26
2316 2622 5.701290 AGAACAAACATACTAAGGTGCAGTC 59.299 40.000 0.00 0.00 0.00 3.51
2317 2623 5.621193 AGAACAAACATACTAAGGTGCAGT 58.379 37.500 0.00 0.00 0.00 4.40
2318 2624 6.373779 CAAGAACAAACATACTAAGGTGCAG 58.626 40.000 0.00 0.00 0.00 4.41
2319 2625 5.278266 GCAAGAACAAACATACTAAGGTGCA 60.278 40.000 0.00 0.00 0.00 4.57
2320 2626 5.048713 AGCAAGAACAAACATACTAAGGTGC 60.049 40.000 0.00 0.00 0.00 5.01
2321 2627 6.560253 AGCAAGAACAAACATACTAAGGTG 57.440 37.500 0.00 0.00 0.00 4.00
2322 2628 6.653740 GGTAGCAAGAACAAACATACTAAGGT 59.346 38.462 0.00 0.00 0.00 3.50
2323 2629 6.653320 TGGTAGCAAGAACAAACATACTAAGG 59.347 38.462 0.00 0.00 0.00 2.69
2324 2630 7.667043 TGGTAGCAAGAACAAACATACTAAG 57.333 36.000 0.00 0.00 0.00 2.18
2325 2631 7.499563 TGTTGGTAGCAAGAACAAACATACTAA 59.500 33.333 7.79 0.00 36.16 2.24
2326 2632 6.993308 TGTTGGTAGCAAGAACAAACATACTA 59.007 34.615 7.79 0.00 36.16 1.82
2327 2633 5.825679 TGTTGGTAGCAAGAACAAACATACT 59.174 36.000 7.79 0.00 36.16 2.12
2328 2634 5.912955 GTGTTGGTAGCAAGAACAAACATAC 59.087 40.000 7.79 0.00 41.54 2.39
2330 2636 4.202111 GGTGTTGGTAGCAAGAACAAACAT 60.202 41.667 14.38 0.00 41.54 2.71
2332 2638 3.490249 GGGTGTTGGTAGCAAGAACAAAC 60.490 47.826 19.94 7.23 31.62 2.93
2334 2640 2.303175 GGGTGTTGGTAGCAAGAACAA 58.697 47.619 19.94 0.00 31.62 2.83
2335 2641 1.477923 GGGGTGTTGGTAGCAAGAACA 60.478 52.381 19.94 7.90 0.00 3.18
2336 2642 1.244816 GGGGTGTTGGTAGCAAGAAC 58.755 55.000 11.17 11.17 0.00 3.01
2338 2644 1.063070 TGGGGGTGTTGGTAGCAAGA 61.063 55.000 7.79 3.58 0.00 3.02
2339 2645 0.609131 CTGGGGGTGTTGGTAGCAAG 60.609 60.000 7.79 0.00 0.00 4.01
2340 2646 1.357272 ACTGGGGGTGTTGGTAGCAA 61.357 55.000 2.54 2.54 0.00 3.91
2341 2647 1.357272 AACTGGGGGTGTTGGTAGCA 61.357 55.000 0.00 0.00 0.00 3.49
2342 2648 0.178973 AAACTGGGGGTGTTGGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
2343 2649 1.423921 AGAAACTGGGGGTGTTGGTAG 59.576 52.381 0.00 0.00 0.00 3.18
2345 2651 0.634465 AAGAAACTGGGGGTGTTGGT 59.366 50.000 0.00 0.00 0.00 3.67
2346 2652 1.686587 GAAAGAAACTGGGGGTGTTGG 59.313 52.381 0.00 0.00 0.00 3.77
2347 2653 2.666317 AGAAAGAAACTGGGGGTGTTG 58.334 47.619 0.00 0.00 0.00 3.33
2348 2654 3.398318 AAGAAAGAAACTGGGGGTGTT 57.602 42.857 0.00 0.00 0.00 3.32
2349 2655 3.398318 AAAGAAAGAAACTGGGGGTGT 57.602 42.857 0.00 0.00 0.00 4.16
2350 2656 3.960755 AGAAAAGAAAGAAACTGGGGGTG 59.039 43.478 0.00 0.00 0.00 4.61
2351 2657 4.265856 AGAAAAGAAAGAAACTGGGGGT 57.734 40.909 0.00 0.00 0.00 4.95
2445 5713 6.123045 ACTAGCCTTGAAAACTTAGCCTTA 57.877 37.500 0.00 0.00 0.00 2.69
2759 6036 0.958382 TGCTACCGAAACCATGGTGC 60.958 55.000 20.60 15.98 39.30 5.01
2821 6126 4.458989 GGTGAAATTCTGTAGATTGGCACA 59.541 41.667 0.00 0.00 0.00 4.57
2858 6163 6.620303 GCAGCATCAAAACAAAAACAACAGAA 60.620 34.615 0.00 0.00 0.00 3.02
2883 6188 5.451908 TGTTACAGTAACCGAAACTAGACG 58.548 41.667 18.94 0.00 37.88 4.18
2893 6198 4.751060 TCTTAGGCATGTTACAGTAACCG 58.249 43.478 18.94 11.98 37.88 4.44
3013 6385 7.814107 GCCAATTGAAATTCTGTAGATTGTCAA 59.186 33.333 7.12 10.25 36.60 3.18
3077 6456 4.406326 TGTTATGGTGACCGAGGCTATAAA 59.594 41.667 0.00 0.00 0.00 1.40
3160 6543 4.949238 TGCAGATATACAGCCACAATTGTT 59.051 37.500 8.77 0.00 0.00 2.83
3234 6623 1.747206 GCACCTGTCAACTTCACCTGT 60.747 52.381 0.00 0.00 0.00 4.00
3250 6640 2.584791 CTGTTACAGCATTTTCGCACC 58.415 47.619 0.00 0.00 0.00 5.01
3259 6650 4.225042 TGATTACCAGTCCTGTTACAGCAT 59.775 41.667 6.88 0.00 0.00 3.79
3428 6823 3.118811 TGAAGATGTCTCACACACACACA 60.119 43.478 0.00 0.00 38.04 3.72
3548 6943 0.468648 CCTCGATTACCAGGGGGAAC 59.531 60.000 0.00 0.00 38.05 3.62
3611 7006 1.583054 ATTTTATCGCTCCAGCCGAC 58.417 50.000 0.00 0.00 37.91 4.79
3623 7018 8.074972 GCCATCAAGATGACTCTGAATTTTATC 58.925 37.037 11.48 0.00 41.20 1.75
3662 7057 0.533032 AGTAGAAGGCAGCCGAACTC 59.467 55.000 5.55 1.68 0.00 3.01
3666 7061 0.818296 GAGAAGTAGAAGGCAGCCGA 59.182 55.000 5.55 0.00 0.00 5.54
3667 7062 0.179097 GGAGAAGTAGAAGGCAGCCG 60.179 60.000 5.55 0.00 0.00 5.52
3678 7073 1.919240 TCGGTGCTCAAGGAGAAGTA 58.081 50.000 0.00 0.00 0.00 2.24
3679 7074 1.205893 GATCGGTGCTCAAGGAGAAGT 59.794 52.381 0.00 0.00 0.00 3.01
3686 7081 0.379669 GCCATTGATCGGTGCTCAAG 59.620 55.000 0.00 0.00 36.16 3.02
3688 7083 0.322366 TTGCCATTGATCGGTGCTCA 60.322 50.000 0.00 0.00 0.00 4.26
3689 7084 0.379669 CTTGCCATTGATCGGTGCTC 59.620 55.000 0.00 0.00 0.00 4.26
3695 7090 0.248498 CAGCAGCTTGCCATTGATCG 60.248 55.000 0.00 0.00 46.52 3.69
3707 7102 5.693769 TTAAATCCTTAGGTACAGCAGCT 57.306 39.130 0.00 0.00 38.84 4.24
3715 7110 7.289084 GGGCCAAATCATTTAAATCCTTAGGTA 59.711 37.037 4.39 0.00 0.00 3.08
3717 7112 6.327365 AGGGCCAAATCATTTAAATCCTTAGG 59.673 38.462 6.18 0.00 0.00 2.69
3719 7114 7.365473 CCAAGGGCCAAATCATTTAAATCCTTA 60.365 37.037 6.18 0.00 30.73 2.69
3741 7136 2.496871 TGTGAATATTGCCCTTGCCAAG 59.503 45.455 0.00 0.00 36.33 3.61
3753 7148 3.057315 GCATAATGGCGCCTGTGAATATT 60.057 43.478 29.70 18.72 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.