Multiple sequence alignment - TraesCS7A01G511900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G511900 chr7A 100.000 6718 0 0 1 6718 699302501 699295784 0.000000e+00 12406.0
1 TraesCS7A01G511900 chr7A 77.461 772 121 37 4974 5711 690171082 690171834 4.850000e-111 412.0
2 TraesCS7A01G511900 chr7A 81.181 271 34 9 1284 1554 46266299 46266046 1.140000e-47 202.0
3 TraesCS7A01G511900 chr7A 86.364 88 10 1 6631 6718 174222656 174222571 1.990000e-15 95.3
4 TraesCS7A01G511900 chr7B 93.445 6026 210 90 436 6382 692611485 692605566 0.000000e+00 8769.0
5 TraesCS7A01G511900 chr7B 89.922 387 35 4 5094 5480 65329594 65329976 4.680000e-136 496.0
6 TraesCS7A01G511900 chr7B 78.748 767 114 38 4974 5711 676139758 676140504 1.020000e-127 468.0
7 TraesCS7A01G511900 chr7B 89.412 85 6 3 6635 6718 677477044 677477126 3.310000e-18 104.0
8 TraesCS7A01G511900 chr7B 92.453 53 3 1 6638 6689 492746136 492746188 2.600000e-09 75.0
9 TraesCS7A01G511900 chr7D 95.233 3692 128 25 853 4516 607037495 607041166 0.000000e+00 5799.0
10 TraesCS7A01G511900 chr7D 94.180 1409 46 20 5141 6534 607041725 607043112 0.000000e+00 2115.0
11 TraesCS7A01G511900 chr7D 78.406 778 116 38 4974 5717 598013979 598013220 6.140000e-125 459.0
12 TraesCS7A01G511900 chr7D 88.580 324 19 6 431 738 607036896 607037217 1.770000e-100 377.0
13 TraesCS7A01G511900 chr7D 80.963 457 59 16 3697 4150 598026572 598026141 3.000000e-88 337.0
14 TraesCS7A01G511900 chr7D 85.304 313 29 7 1 313 607036553 607036848 2.350000e-79 307.0
15 TraesCS7A01G511900 chr7D 87.975 158 17 1 6461 6616 607043220 607043377 1.150000e-42 185.0
16 TraesCS7A01G511900 chr7D 89.888 89 7 2 6631 6718 37235744 37235831 5.510000e-21 113.0
17 TraesCS7A01G511900 chr7D 82.222 90 14 1 6629 6718 533492246 533492159 7.220000e-10 76.8
18 TraesCS7A01G511900 chr1B 90.448 513 46 2 3754 4265 35653113 35652603 0.000000e+00 673.0
19 TraesCS7A01G511900 chr1B 88.395 405 41 5 5055 5459 35652593 35652195 3.640000e-132 483.0
20 TraesCS7A01G511900 chr1B 97.436 39 0 1 1244 1282 650488866 650488829 1.560000e-06 65.8
21 TraesCS7A01G511900 chr1B 100.000 34 0 0 1249 1282 526244194 526244161 5.620000e-06 63.9
22 TraesCS7A01G511900 chr3B 89.175 388 37 5 5094 5480 70847922 70848305 4.710000e-131 479.0
23 TraesCS7A01G511900 chr3B 85.714 112 14 2 1184 1295 741677789 741677898 4.260000e-22 117.0
24 TraesCS7A01G511900 chrUn 78.655 773 116 38 4974 5717 459007429 459006677 1.020000e-127 468.0
25 TraesCS7A01G511900 chr5B 87.500 160 18 2 1765 1923 418458428 418458270 4.140000e-42 183.0
26 TraesCS7A01G511900 chr5B 87.234 94 9 1 3802 3895 443274504 443274594 3.310000e-18 104.0
27 TraesCS7A01G511900 chr6A 88.000 100 4 4 3699 3792 528933168 528933265 1.980000e-20 111.0
28 TraesCS7A01G511900 chr6D 89.535 86 7 1 6635 6718 448700670 448700585 2.560000e-19 108.0
29 TraesCS7A01G511900 chr6D 82.955 88 11 3 6632 6718 56390061 56389977 7.220000e-10 76.8
30 TraesCS7A01G511900 chr6D 80.208 96 15 2 1326 1421 273042476 273042567 1.210000e-07 69.4
31 TraesCS7A01G511900 chr5D 87.234 94 9 1 3802 3895 373209292 373209382 3.310000e-18 104.0
32 TraesCS7A01G511900 chr5D 88.372 86 8 1 6633 6718 426474597 426474680 1.190000e-17 102.0
33 TraesCS7A01G511900 chr5D 82.353 85 12 1 6532 6616 320444985 320444904 3.360000e-08 71.3
34 TraesCS7A01G511900 chr4D 92.157 51 4 0 6632 6682 46174813 46174763 9.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G511900 chr7A 699295784 699302501 6717 True 12406.0 12406 100.0000 1 6718 1 chr7A.!!$R3 6717
1 TraesCS7A01G511900 chr7A 690171082 690171834 752 False 412.0 412 77.4610 4974 5711 1 chr7A.!!$F1 737
2 TraesCS7A01G511900 chr7B 692605566 692611485 5919 True 8769.0 8769 93.4450 436 6382 1 chr7B.!!$R1 5946
3 TraesCS7A01G511900 chr7B 676139758 676140504 746 False 468.0 468 78.7480 4974 5711 1 chr7B.!!$F3 737
4 TraesCS7A01G511900 chr7D 607036553 607043377 6824 False 1756.6 5799 90.2544 1 6616 5 chr7D.!!$F2 6615
5 TraesCS7A01G511900 chr7D 598013220 598013979 759 True 459.0 459 78.4060 4974 5717 1 chr7D.!!$R2 743
6 TraesCS7A01G511900 chr1B 35652195 35653113 918 True 578.0 673 89.4215 3754 5459 2 chr1B.!!$R3 1705
7 TraesCS7A01G511900 chrUn 459006677 459007429 752 True 468.0 468 78.6550 4974 5717 1 chrUn.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 394 0.034896 ATCAACACGAACGGCCTCTT 59.965 50.0 0.00 0.0 0.00 2.85 F
401 418 0.037697 CGACAGACCCACGGATTCAA 60.038 55.0 0.00 0.0 0.00 2.69 F
405 422 0.037734 AGACCCACGGATTCAAACCC 59.962 55.0 0.00 0.0 0.00 4.11 F
694 722 0.251832 AACCACCACCAACACCAACA 60.252 50.0 0.00 0.0 0.00 3.33 F
2477 2733 0.890996 GGCAATTCTAGGCATCGGGG 60.891 60.0 0.00 0.0 0.00 5.73 F
2736 2992 0.323725 AATCAATGCCACCGCCTTCT 60.324 50.0 0.00 0.0 0.00 2.85 F
3450 3706 0.609957 CCTGTGCTGAATGAAGGGCA 60.610 55.0 0.00 0.0 0.00 5.36 F
3636 3897 0.179092 CCAGTCGCAGATGAGCATGA 60.179 55.0 0.00 0.0 40.67 3.07 F
4833 5105 0.038892 CAACACTGCAGGGAACATGC 60.039 55.0 26.06 0.0 44.11 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2254 0.321919 GCAGGCTCATGAACACTGGA 60.322 55.000 17.55 0.0 0.00 3.86 R
2079 2323 0.715987 ACCCATAAGCCCCCATTTGT 59.284 50.000 0.00 0.0 0.00 2.83 R
2226 2479 1.080093 CAATTGCTGCTGCTGGTGG 60.080 57.895 17.00 0.0 40.48 4.61 R
2691 2947 0.839946 GAGGGGCTATCTTTGGCTCA 59.160 55.000 0.00 0.0 29.75 4.26 R
3394 3650 0.319728 CGGCTAGACCATCCTCCATG 59.680 60.000 0.00 0.0 39.03 3.66 R
3623 3884 1.094073 AGGCGTTCATGCTCATCTGC 61.094 55.000 0.00 0.0 34.52 4.26 R
4815 5087 1.518056 CGCATGTTCCCTGCAGTGTT 61.518 55.000 13.81 0.0 39.64 3.32 R
5538 6012 1.267806 CACAATGCCACCTGACAGTTC 59.732 52.381 0.93 0.0 0.00 3.01 R
6116 6598 0.035630 CACAAGAGAAGGCAGGGGAG 60.036 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.010820 TGCACACAGAAATTGATTTCCATCA 59.989 36.000 11.72 1.89 45.52 3.07
54 55 1.788258 AGCGTCACAACAGATCACAG 58.212 50.000 0.00 0.00 0.00 3.66
63 64 0.805614 ACAGATCACAGTCCGACGAG 59.194 55.000 0.00 0.00 0.00 4.18
76 77 2.169978 TCCGACGAGACCTCTTCTATCA 59.830 50.000 0.00 0.00 33.22 2.15
78 79 2.288458 CGACGAGACCTCTTCTATCACC 59.712 54.545 0.00 0.00 33.22 4.02
121 122 1.341531 CTCGACTCCTGTTCAACACCT 59.658 52.381 0.00 0.00 0.00 4.00
122 123 1.068588 TCGACTCCTGTTCAACACCTG 59.931 52.381 0.00 0.00 0.00 4.00
132 133 1.136828 TCAACACCTGCCAACTACCT 58.863 50.000 0.00 0.00 0.00 3.08
134 135 2.092103 TCAACACCTGCCAACTACCTTT 60.092 45.455 0.00 0.00 0.00 3.11
135 136 2.271944 ACACCTGCCAACTACCTTTC 57.728 50.000 0.00 0.00 0.00 2.62
137 138 0.605589 ACCTGCCAACTACCTTTCGC 60.606 55.000 0.00 0.00 0.00 4.70
148 149 4.076394 ACTACCTTTCGCCTGCAATTAAA 58.924 39.130 0.00 0.00 0.00 1.52
149 150 4.705023 ACTACCTTTCGCCTGCAATTAAAT 59.295 37.500 0.00 0.00 0.00 1.40
150 151 4.110036 ACCTTTCGCCTGCAATTAAATC 57.890 40.909 0.00 0.00 0.00 2.17
175 176 5.573219 TCATCATTGGATTCCTTCAACACT 58.427 37.500 3.95 0.00 0.00 3.55
180 181 2.084546 GGATTCCTTCAACACTTCCCG 58.915 52.381 0.00 0.00 0.00 5.14
191 192 0.944311 CACTTCCCGTCACGTTCCAG 60.944 60.000 0.00 0.00 0.00 3.86
192 193 1.366366 CTTCCCGTCACGTTCCAGT 59.634 57.895 0.00 0.00 0.00 4.00
193 194 0.249741 CTTCCCGTCACGTTCCAGTT 60.250 55.000 0.00 0.00 0.00 3.16
194 195 0.249573 TTCCCGTCACGTTCCAGTTC 60.250 55.000 0.00 0.00 0.00 3.01
195 196 1.666872 CCCGTCACGTTCCAGTTCC 60.667 63.158 0.00 0.00 0.00 3.62
196 197 1.068417 CCGTCACGTTCCAGTTCCA 59.932 57.895 0.00 0.00 0.00 3.53
207 208 4.610945 GTTCCAGTTCCACATCAACAAAG 58.389 43.478 0.00 0.00 0.00 2.77
217 218 5.754406 TCCACATCAACAAAGCAATTTTCAG 59.246 36.000 0.00 0.00 0.00 3.02
266 267 7.818997 ATCATAAATGCATGACAGATCAAGT 57.181 32.000 0.00 0.00 38.69 3.16
269 270 1.456296 TGCATGACAGATCAAGTGGC 58.544 50.000 0.00 0.00 38.69 5.01
274 275 2.125552 CAGATCAAGTGGCGGCGA 60.126 61.111 12.98 0.00 0.00 5.54
290 291 2.028484 GACGCACCCAGACGAACA 59.972 61.111 0.00 0.00 0.00 3.18
291 292 1.374252 GACGCACCCAGACGAACAT 60.374 57.895 0.00 0.00 0.00 2.71
292 293 1.352156 GACGCACCCAGACGAACATC 61.352 60.000 0.00 0.00 0.00 3.06
293 294 2.444624 CGCACCCAGACGAACATCG 61.445 63.158 0.00 0.00 46.93 3.84
294 295 2.740714 GCACCCAGACGAACATCGC 61.741 63.158 0.00 0.00 45.12 4.58
295 296 1.374125 CACCCAGACGAACATCGCA 60.374 57.895 0.00 0.00 45.12 5.10
296 297 1.374252 ACCCAGACGAACATCGCAC 60.374 57.895 0.00 0.00 45.12 5.34
300 301 2.818274 GACGAACATCGCACCCCC 60.818 66.667 0.00 0.00 45.12 5.40
307 308 0.757188 ACATCGCACCCCCTCTAGAG 60.757 60.000 13.18 13.18 0.00 2.43
313 314 2.446802 CCCCCTCTAGAGCACCCC 60.447 72.222 14.73 0.00 0.00 4.95
340 357 2.785562 TCTAACAAACCGGAATGTGGG 58.214 47.619 9.46 9.14 0.00 4.61
341 358 1.816224 CTAACAAACCGGAATGTGGGG 59.184 52.381 9.46 3.13 0.00 4.96
342 359 1.468506 AACAAACCGGAATGTGGGGC 61.469 55.000 9.46 0.00 0.00 5.80
344 361 1.304134 AAACCGGAATGTGGGGCTC 60.304 57.895 9.46 0.00 0.00 4.70
345 362 2.781431 AAACCGGAATGTGGGGCTCC 62.781 60.000 9.46 0.00 0.00 4.70
346 363 4.506255 CCGGAATGTGGGGCTCCC 62.506 72.222 0.00 0.72 45.71 4.30
358 375 4.483243 GCTCCCGGCCGAATTCCA 62.483 66.667 30.73 1.80 34.27 3.53
359 376 2.510906 CTCCCGGCCGAATTCCAT 59.489 61.111 30.73 0.00 0.00 3.41
360 377 1.598130 CTCCCGGCCGAATTCCATC 60.598 63.158 30.73 0.00 0.00 3.51
361 378 2.191908 CCCGGCCGAATTCCATCA 59.808 61.111 30.73 0.00 0.00 3.07
362 379 1.453015 CCCGGCCGAATTCCATCAA 60.453 57.895 30.73 0.00 0.00 2.57
363 380 1.724582 CCCGGCCGAATTCCATCAAC 61.725 60.000 30.73 0.00 0.00 3.18
364 381 1.029408 CCGGCCGAATTCCATCAACA 61.029 55.000 30.73 0.00 0.00 3.33
365 382 0.098728 CGGCCGAATTCCATCAACAC 59.901 55.000 24.07 0.00 0.00 3.32
366 383 0.098728 GGCCGAATTCCATCAACACG 59.901 55.000 0.00 0.00 0.00 4.49
367 384 1.083489 GCCGAATTCCATCAACACGA 58.917 50.000 0.00 0.00 0.00 4.35
368 385 1.466950 GCCGAATTCCATCAACACGAA 59.533 47.619 0.00 0.00 0.00 3.85
369 386 2.727916 GCCGAATTCCATCAACACGAAC 60.728 50.000 0.00 0.00 0.00 3.95
370 387 2.473868 CCGAATTCCATCAACACGAACG 60.474 50.000 0.00 0.00 0.00 3.95
371 388 2.473868 CGAATTCCATCAACACGAACGG 60.474 50.000 0.00 0.00 0.00 4.44
372 389 0.802494 ATTCCATCAACACGAACGGC 59.198 50.000 0.00 0.00 0.00 5.68
373 390 1.231958 TTCCATCAACACGAACGGCC 61.232 55.000 0.00 0.00 0.00 6.13
374 391 1.671054 CCATCAACACGAACGGCCT 60.671 57.895 0.00 0.00 0.00 5.19
375 392 1.635663 CCATCAACACGAACGGCCTC 61.636 60.000 0.00 0.00 0.00 4.70
376 393 0.670546 CATCAACACGAACGGCCTCT 60.671 55.000 0.00 0.00 0.00 3.69
377 394 0.034896 ATCAACACGAACGGCCTCTT 59.965 50.000 0.00 0.00 0.00 2.85
378 395 0.599204 TCAACACGAACGGCCTCTTC 60.599 55.000 0.00 0.00 0.00 2.87
379 396 1.301479 AACACGAACGGCCTCTTCC 60.301 57.895 0.00 0.00 0.00 3.46
380 397 2.434359 CACGAACGGCCTCTTCCC 60.434 66.667 0.00 0.00 0.00 3.97
381 398 3.703127 ACGAACGGCCTCTTCCCC 61.703 66.667 0.00 0.00 0.00 4.81
382 399 4.468689 CGAACGGCCTCTTCCCCC 62.469 72.222 0.00 0.00 0.00 5.40
383 400 4.468689 GAACGGCCTCTTCCCCCG 62.469 72.222 0.00 0.00 46.97 5.73
387 404 3.787001 GGCCTCTTCCCCCGACAG 61.787 72.222 0.00 0.00 0.00 3.51
388 405 2.683933 GCCTCTTCCCCCGACAGA 60.684 66.667 0.00 0.00 0.00 3.41
389 406 3.020237 GCCTCTTCCCCCGACAGAC 62.020 68.421 0.00 0.00 0.00 3.51
390 407 2.359967 CCTCTTCCCCCGACAGACC 61.360 68.421 0.00 0.00 0.00 3.85
391 408 2.284405 TCTTCCCCCGACAGACCC 60.284 66.667 0.00 0.00 0.00 4.46
392 409 2.606519 CTTCCCCCGACAGACCCA 60.607 66.667 0.00 0.00 0.00 4.51
393 410 2.926242 TTCCCCCGACAGACCCAC 60.926 66.667 0.00 0.00 0.00 4.61
399 416 4.496670 CGACAGACCCACGGATTC 57.503 61.111 0.00 0.00 0.00 2.52
400 417 1.589630 CGACAGACCCACGGATTCA 59.410 57.895 0.00 0.00 0.00 2.57
401 418 0.037697 CGACAGACCCACGGATTCAA 60.038 55.000 0.00 0.00 0.00 2.69
402 419 1.606994 CGACAGACCCACGGATTCAAA 60.607 52.381 0.00 0.00 0.00 2.69
403 420 1.804748 GACAGACCCACGGATTCAAAC 59.195 52.381 0.00 0.00 0.00 2.93
404 421 1.165270 CAGACCCACGGATTCAAACC 58.835 55.000 0.00 0.00 0.00 3.27
405 422 0.037734 AGACCCACGGATTCAAACCC 59.962 55.000 0.00 0.00 0.00 4.11
406 423 0.963856 GACCCACGGATTCAAACCCC 60.964 60.000 0.00 0.00 0.00 4.95
407 424 1.075836 CCCACGGATTCAAACCCCA 59.924 57.895 0.00 0.00 0.00 4.96
408 425 0.540830 CCCACGGATTCAAACCCCAA 60.541 55.000 0.00 0.00 0.00 4.12
409 426 1.333177 CCACGGATTCAAACCCCAAA 58.667 50.000 0.00 0.00 0.00 3.28
410 427 1.000394 CCACGGATTCAAACCCCAAAC 60.000 52.381 0.00 0.00 0.00 2.93
411 428 1.000394 CACGGATTCAAACCCCAAACC 60.000 52.381 0.00 0.00 0.00 3.27
412 429 0.606096 CGGATTCAAACCCCAAACCC 59.394 55.000 0.00 0.00 0.00 4.11
413 430 1.723288 GGATTCAAACCCCAAACCCA 58.277 50.000 0.00 0.00 0.00 4.51
414 431 2.050918 GGATTCAAACCCCAAACCCAA 58.949 47.619 0.00 0.00 0.00 4.12
415 432 2.038426 GGATTCAAACCCCAAACCCAAG 59.962 50.000 0.00 0.00 0.00 3.61
416 433 1.501582 TTCAAACCCCAAACCCAAGG 58.498 50.000 0.00 0.00 0.00 3.61
417 434 0.340208 TCAAACCCCAAACCCAAGGT 59.660 50.000 0.00 0.00 37.65 3.50
487 504 1.069500 CCGAATTCCACCAACACGAAC 60.069 52.381 0.00 0.00 0.00 3.95
490 507 0.887387 ATTCCACCAACACGAACGGG 60.887 55.000 0.00 0.00 0.00 5.28
523 550 3.140144 AGATTGAAAACCCAGACCCAAGA 59.860 43.478 0.00 0.00 0.00 3.02
530 557 1.133199 ACCCAGACCCAAGATTTTGCA 60.133 47.619 0.00 0.00 32.79 4.08
535 562 4.262549 CCAGACCCAAGATTTTGCAAATGA 60.263 41.667 13.65 0.00 32.79 2.57
694 722 0.251832 AACCACCACCAACACCAACA 60.252 50.000 0.00 0.00 0.00 3.33
709 737 4.954970 ACACCACCAAGCCAGCCG 62.955 66.667 0.00 0.00 0.00 5.52
738 790 2.225727 CGAGCCAAGGGTTTTTGAGTAC 59.774 50.000 0.00 0.00 0.00 2.73
789 841 4.787280 CTCCGCTCCCCACTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
790 842 4.779733 TCCGCTCCCCACTCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
794 846 2.279073 CTCCCCACTCCCTCGCTA 59.721 66.667 0.00 0.00 0.00 4.26
796 848 2.042843 CCCCACTCCCTCGCTACT 60.043 66.667 0.00 0.00 0.00 2.57
797 849 2.128507 CCCCACTCCCTCGCTACTC 61.129 68.421 0.00 0.00 0.00 2.59
798 850 2.128507 CCCACTCCCTCGCTACTCC 61.129 68.421 0.00 0.00 0.00 3.85
799 851 2.128507 CCACTCCCTCGCTACTCCC 61.129 68.421 0.00 0.00 0.00 4.30
800 852 2.128507 CACTCCCTCGCTACTCCCC 61.129 68.421 0.00 0.00 0.00 4.81
801 853 2.279073 CTCCCTCGCTACTCCCCA 59.721 66.667 0.00 0.00 0.00 4.96
802 854 2.043248 TCCCTCGCTACTCCCCAC 60.043 66.667 0.00 0.00 0.00 4.61
803 855 3.155167 CCCTCGCTACTCCCCACC 61.155 72.222 0.00 0.00 0.00 4.61
804 856 3.155167 CCTCGCTACTCCCCACCC 61.155 72.222 0.00 0.00 0.00 4.61
805 857 3.155167 CTCGCTACTCCCCACCCC 61.155 72.222 0.00 0.00 0.00 4.95
806 858 4.791069 TCGCTACTCCCCACCCCC 62.791 72.222 0.00 0.00 0.00 5.40
825 877 4.929211 CCCCCGAAAAATTTCAATTGACTC 59.071 41.667 7.89 0.00 37.01 3.36
826 878 4.929211 CCCCGAAAAATTTCAATTGACTCC 59.071 41.667 7.89 0.00 37.01 3.85
892 1107 1.612442 TAGGGCTCCTGGTGGTGTC 60.612 63.158 4.16 0.00 34.61 3.67
893 1108 4.035102 GGGCTCCTGGTGGTGTCC 62.035 72.222 0.00 0.00 43.26 4.02
894 1109 2.930562 GGCTCCTGGTGGTGTCCT 60.931 66.667 0.00 0.00 34.23 3.85
907 1122 1.846124 TGTCCTGGTGAGGGGGTTC 60.846 63.158 0.00 0.00 40.25 3.62
908 1123 2.204090 TCCTGGTGAGGGGGTTCC 60.204 66.667 0.00 0.00 40.25 3.62
912 1127 2.033602 GGTGAGGGGGTTCCGTTG 59.966 66.667 0.00 0.00 41.52 4.10
913 1128 2.671963 GTGAGGGGGTTCCGTTGC 60.672 66.667 0.00 0.00 41.52 4.17
1365 1588 1.137282 GTCTTCATCTTCCCCGTCTCC 59.863 57.143 0.00 0.00 0.00 3.71
1464 1687 2.887360 GGCATTGTGCGCAAGGAT 59.113 55.556 27.18 3.62 46.21 3.24
1469 1692 1.132834 CATTGTGCGCAAGGATAGCAA 59.867 47.619 19.29 11.10 42.93 3.91
1479 1702 1.889573 GGATAGCAACGCCAGCCTC 60.890 63.158 0.00 0.00 0.00 4.70
1527 1750 4.159108 CCTCCTCCTACCCCGGCT 62.159 72.222 0.00 0.00 0.00 5.52
1541 1764 3.993535 GGCTGTGCCTTCTTCTGG 58.006 61.111 0.73 0.00 46.69 3.86
1542 1765 1.376466 GGCTGTGCCTTCTTCTGGA 59.624 57.895 0.73 0.00 46.69 3.86
1774 2012 3.576356 CACACCCGCATCCGCATC 61.576 66.667 0.00 0.00 38.40 3.91
1775 2013 4.856801 ACACCCGCATCCGCATCC 62.857 66.667 0.00 0.00 38.40 3.51
1776 2014 4.854924 CACCCGCATCCGCATCCA 62.855 66.667 0.00 0.00 38.40 3.41
1777 2015 4.856801 ACCCGCATCCGCATCCAC 62.857 66.667 0.00 0.00 38.40 4.02
1778 2016 4.854924 CCCGCATCCGCATCCACA 62.855 66.667 0.00 0.00 38.40 4.17
1854 2098 4.509230 CCAGTGTTCATGAACGATCATAGG 59.491 45.833 28.55 19.58 44.53 2.57
1859 2103 3.576861 TCATGAACGATCATAGGGAGGT 58.423 45.455 7.95 0.00 44.53 3.85
2010 2254 4.120331 GCGCCGCCTGAGCAAATT 62.120 61.111 0.00 0.00 39.83 1.82
2079 2323 1.406887 GGAGAGCGGCAAATACCTTCA 60.407 52.381 1.45 0.00 0.00 3.02
2264 2517 4.626081 ACCACAGCAGGTGCCGTC 62.626 66.667 0.00 0.00 46.50 4.79
2266 2519 4.969196 CACAGCAGGTGCCGTCGT 62.969 66.667 0.00 0.00 41.36 4.34
2337 2593 4.695455 TCTCCAAATTCCGTTCATTCTGAC 59.305 41.667 0.00 0.00 0.00 3.51
2477 2733 0.890996 GGCAATTCTAGGCATCGGGG 60.891 60.000 0.00 0.00 0.00 5.73
2649 2905 2.036958 TACCCCAGAATGCAACATCG 57.963 50.000 0.00 0.00 31.97 3.84
2708 2964 0.548510 AGTGAGCCAAAGATAGCCCC 59.451 55.000 0.00 0.00 0.00 5.80
2736 2992 0.323725 AATCAATGCCACCGCCTTCT 60.324 50.000 0.00 0.00 0.00 2.85
2759 3015 4.003648 GTGGCCAGTCCTTATATGCATAC 58.996 47.826 5.11 0.00 35.26 2.39
2935 3191 1.092345 GGGCGAGCAGAAGGATGTTC 61.092 60.000 0.00 0.00 0.00 3.18
2974 3230 1.134280 AGGAAGCTCCACATGAATCCG 60.134 52.381 0.00 0.00 39.61 4.18
2983 3239 2.356125 CCACATGAATCCGTTCCTCCTT 60.356 50.000 0.00 0.00 33.26 3.36
3007 3263 1.762957 ACGCTAATGCTCAGGTACCAT 59.237 47.619 15.94 0.00 36.97 3.55
3022 3278 0.618458 ACCATTACCGACACCAGCAT 59.382 50.000 0.00 0.00 0.00 3.79
3141 3397 1.612726 GCAAGCAGGGAGAACATCAGT 60.613 52.381 0.00 0.00 0.00 3.41
3247 3503 3.698029 AAGACACACATGCAGAACAAC 57.302 42.857 0.00 0.00 0.00 3.32
3315 3571 5.356751 CACCTTTTGCCAGTATATGTGCTTA 59.643 40.000 0.00 0.00 0.00 3.09
3345 3601 9.672673 AGTCATAAGTTGTGAATGCTTATTACT 57.327 29.630 3.63 0.00 36.05 2.24
3450 3706 0.609957 CCTGTGCTGAATGAAGGGCA 60.610 55.000 0.00 0.00 0.00 5.36
3493 3749 2.908073 CGGGCAAGCTCACACCAAC 61.908 63.158 0.00 0.00 0.00 3.77
3541 3797 9.088512 AGAAGTTCATATACGTTCTGTTTCATC 57.911 33.333 5.50 0.00 0.00 2.92
3543 3799 9.436957 AAGTTCATATACGTTCTGTTTCATCTT 57.563 29.630 0.00 0.00 0.00 2.40
3544 3800 9.436957 AGTTCATATACGTTCTGTTTCATCTTT 57.563 29.630 0.00 0.00 0.00 2.52
3547 3808 9.031360 TCATATACGTTCTGTTTCATCTTTAGC 57.969 33.333 0.00 0.00 0.00 3.09
3554 3815 7.530861 CGTTCTGTTTCATCTTTAGCACTTAAC 59.469 37.037 0.00 0.00 0.00 2.01
3557 3818 9.066892 TCTGTTTCATCTTTAGCACTTAACAAT 57.933 29.630 0.00 0.00 0.00 2.71
3605 3866 1.992557 AGGGCAAACCACTAGATTGGA 59.007 47.619 6.39 0.00 43.89 3.53
3636 3897 0.179092 CCAGTCGCAGATGAGCATGA 60.179 55.000 0.00 0.00 40.67 3.07
3643 3904 0.935898 CAGATGAGCATGAACGCCTC 59.064 55.000 0.00 0.00 0.00 4.70
3653 3914 0.759959 TGAACGCCTCCAGGTTACAA 59.240 50.000 0.00 0.00 37.57 2.41
3691 3953 4.966965 TTTTTATCCCGCGCATCTTTAA 57.033 36.364 8.75 0.00 0.00 1.52
3693 3955 5.508200 TTTTATCCCGCGCATCTTTAATT 57.492 34.783 8.75 0.00 0.00 1.40
3721 3987 8.927675 AAGTAATGTTCTTTACCAACCACATA 57.072 30.769 5.41 0.00 33.43 2.29
3723 3989 8.956426 AGTAATGTTCTTTACCAACCACATATG 58.044 33.333 0.00 0.00 33.43 1.78
3724 3990 7.775053 AATGTTCTTTACCAACCACATATGT 57.225 32.000 1.41 1.41 0.00 2.29
3725 3991 7.775053 ATGTTCTTTACCAACCACATATGTT 57.225 32.000 5.37 0.00 0.00 2.71
3726 3992 7.209471 TGTTCTTTACCAACCACATATGTTC 57.791 36.000 5.37 0.00 0.00 3.18
3728 3994 5.553123 TCTTTACCAACCACATATGTTCGT 58.447 37.500 5.37 2.42 0.00 3.85
4034 4300 2.289382 CCCCAATGTTGTGGCCTTTTAC 60.289 50.000 3.32 0.00 37.34 2.01
4085 4351 5.189928 TCCATTGCAACGGTTACAGAATAT 58.810 37.500 11.96 0.00 0.00 1.28
4225 4491 6.798315 AATGTCTGCATTCTAGCATATGTC 57.202 37.500 4.29 0.00 44.68 3.06
4423 4689 2.159254 TGTGCACTTTGACCTCAAAAGC 60.159 45.455 19.41 13.82 44.24 3.51
4481 4747 5.006746 CGTCCAATATGCAAGGTAAGAACTC 59.993 44.000 0.00 0.00 0.00 3.01
4482 4748 5.880332 GTCCAATATGCAAGGTAAGAACTCA 59.120 40.000 0.00 0.00 0.00 3.41
4517 4787 1.619654 ATTGCTGGCTTGTTGCACTA 58.380 45.000 0.00 0.00 45.15 2.74
4518 4788 1.397672 TTGCTGGCTTGTTGCACTAA 58.602 45.000 0.00 0.00 45.15 2.24
4641 4911 9.639563 TTGATAAGTTTTAGCATCAATATCCCA 57.360 29.630 0.00 0.00 33.60 4.37
4661 4931 7.872061 TCCCATCATACTTGGAATATACAGT 57.128 36.000 0.00 0.00 36.26 3.55
4673 4943 5.182950 TGGAATATACAGTGCTTTGTTGTGG 59.817 40.000 0.00 0.00 32.56 4.17
4694 4964 7.289310 TGTGGTAATCATATGGACATTCATGT 58.711 34.615 2.13 0.00 45.16 3.21
4698 4968 3.489355 TCATATGGACATTCATGTGGGC 58.511 45.455 2.13 0.00 41.95 5.36
4701 4971 0.392863 TGGACATTCATGTGGGCGAG 60.393 55.000 0.00 0.00 41.95 5.03
4750 5020 6.299805 TGAGTTGCACCTTAGAATAGACAT 57.700 37.500 0.00 0.00 0.00 3.06
4751 5021 6.108687 TGAGTTGCACCTTAGAATAGACATG 58.891 40.000 0.00 0.00 0.00 3.21
4784 5056 4.699925 TTAGTCCGGGGATCATTTTAGG 57.300 45.455 0.00 0.00 0.00 2.69
4785 5057 1.143073 AGTCCGGGGATCATTTTAGGC 59.857 52.381 0.00 0.00 0.00 3.93
4786 5058 1.143073 GTCCGGGGATCATTTTAGGCT 59.857 52.381 0.00 0.00 0.00 4.58
4787 5059 1.850345 TCCGGGGATCATTTTAGGCTT 59.150 47.619 0.00 0.00 0.00 4.35
4788 5060 2.243736 TCCGGGGATCATTTTAGGCTTT 59.756 45.455 0.00 0.00 0.00 3.51
4789 5061 3.031013 CCGGGGATCATTTTAGGCTTTT 58.969 45.455 0.00 0.00 0.00 2.27
4790 5062 4.079672 TCCGGGGATCATTTTAGGCTTTTA 60.080 41.667 0.00 0.00 0.00 1.52
4791 5063 4.278419 CCGGGGATCATTTTAGGCTTTTAG 59.722 45.833 0.00 0.00 0.00 1.85
4796 5068 7.426410 GGGATCATTTTAGGCTTTTAGCTAAC 58.574 38.462 5.45 0.00 41.99 2.34
4815 5087 1.906574 ACCTTAAGGCATCTTCCGTCA 59.093 47.619 21.92 0.00 39.32 4.35
4822 5094 0.166814 GCATCTTCCGTCAACACTGC 59.833 55.000 0.00 0.00 0.00 4.40
4824 5096 1.462283 CATCTTCCGTCAACACTGCAG 59.538 52.381 13.48 13.48 0.00 4.41
4832 5104 1.267806 GTCAACACTGCAGGGAACATG 59.732 52.381 26.06 15.39 0.00 3.21
4833 5105 0.038892 CAACACTGCAGGGAACATGC 60.039 55.000 26.06 0.00 44.11 4.06
4873 5145 7.148069 GCATGGCTACTAACAATAAACTCCTTT 60.148 37.037 0.00 0.00 0.00 3.11
4876 5148 9.969001 TGGCTACTAACAATAAACTCCTTTTAT 57.031 29.630 0.00 0.00 41.42 1.40
4920 5344 5.988310 TTGCCATCTGAATTTTGTCATCT 57.012 34.783 0.00 0.00 0.00 2.90
4948 5375 4.631131 TGATCTACTAAACATCCATGCCG 58.369 43.478 0.00 0.00 0.00 5.69
4962 5389 3.141398 CCATGCCGCATTATCTGTAGTT 58.859 45.455 2.16 0.00 0.00 2.24
5068 5511 1.787847 GACCGACCAATGCGAACAG 59.212 57.895 0.00 0.00 0.00 3.16
5158 5605 1.098050 GGATGATGCAGGTTGGTGAC 58.902 55.000 0.00 0.00 0.00 3.67
5323 5770 6.366332 CCGTGTCCAAATTCAGATAGCTATAC 59.634 42.308 6.13 0.74 0.00 1.47
5326 5773 6.558775 TGTCCAAATTCAGATAGCTATACCCT 59.441 38.462 6.13 0.00 0.00 4.34
5538 6012 5.468072 AGAGTCTGATGTAAGCTGTTGTTTG 59.532 40.000 0.00 0.00 0.00 2.93
5858 6336 7.931578 ATATATGGTTGGTTTCGTTCTTTCA 57.068 32.000 0.00 0.00 0.00 2.69
5860 6338 7.931578 ATATGGTTGGTTTCGTTCTTTCATA 57.068 32.000 0.00 0.00 0.00 2.15
6120 6602 6.911250 TTTATTTTCTTCCCTTTGTCTCCC 57.089 37.500 0.00 0.00 0.00 4.30
6121 6603 2.971901 TTTCTTCCCTTTGTCTCCCC 57.028 50.000 0.00 0.00 0.00 4.81
6122 6604 2.133858 TTCTTCCCTTTGTCTCCCCT 57.866 50.000 0.00 0.00 0.00 4.79
6123 6605 1.362224 TCTTCCCTTTGTCTCCCCTG 58.638 55.000 0.00 0.00 0.00 4.45
6128 6610 0.322906 CCTTTGTCTCCCCTGCCTTC 60.323 60.000 0.00 0.00 0.00 3.46
6150 6632 6.145338 TCTCTTGTGGGTAATAATCGAGTC 57.855 41.667 0.00 0.00 0.00 3.36
6165 6647 2.100252 TCGAGTCTGTTTGGAAGTCGTT 59.900 45.455 0.00 0.00 0.00 3.85
6169 6651 2.287103 GTCTGTTTGGAAGTCGTTGGTC 59.713 50.000 0.00 0.00 0.00 4.02
6170 6652 1.260561 CTGTTTGGAAGTCGTTGGTCG 59.739 52.381 0.00 0.00 41.41 4.79
6172 6654 0.178533 TTTGGAAGTCGTTGGTCGGT 59.821 50.000 0.00 0.00 40.32 4.69
6173 6655 0.249573 TTGGAAGTCGTTGGTCGGTC 60.250 55.000 0.00 0.00 40.32 4.79
6174 6656 1.364901 GGAAGTCGTTGGTCGGTCA 59.635 57.895 0.00 0.00 40.32 4.02
6179 6661 1.829096 TCGTTGGTCGGTCAGGTCA 60.829 57.895 0.00 0.00 40.32 4.02
6184 6669 1.906824 GGTCGGTCAGGTCAGGTCA 60.907 63.158 0.00 0.00 0.00 4.02
6245 6731 4.986054 TCTGGGTGGTGTAATACAAGTT 57.014 40.909 0.00 0.00 0.00 2.66
6273 6759 4.710375 GGAACTGTCAGTTGAGGTCCTATA 59.290 45.833 22.83 0.00 38.80 1.31
6308 6795 3.430556 GCTTGGTTTTTCGTGTGTTTGTT 59.569 39.130 0.00 0.00 0.00 2.83
6315 6802 8.618677 TGGTTTTTCGTGTGTTTGTTATGTATA 58.381 29.630 0.00 0.00 0.00 1.47
6393 6883 9.401058 CTGTGAGGAAGAAAAATATATCCAGTT 57.599 33.333 0.00 0.00 32.47 3.16
6463 6953 0.239347 GGCTGCAGCTGTTGTACTTG 59.761 55.000 35.82 0.00 41.70 3.16
6475 6965 1.440618 TGTACTTGGGGCTCCTTTGA 58.559 50.000 3.07 0.00 0.00 2.69
6476 6966 1.351017 TGTACTTGGGGCTCCTTTGAG 59.649 52.381 3.07 0.00 41.84 3.02
6479 6969 0.674895 CTTGGGGCTCCTTTGAGTCG 60.675 60.000 3.07 0.00 44.47 4.18
6514 7189 2.544267 GGATATTTCTTGCGTCGGGAAG 59.456 50.000 0.00 0.00 42.42 3.46
6516 7191 1.892209 ATTTCTTGCGTCGGGAAGTT 58.108 45.000 0.00 0.00 41.81 2.66
6544 7219 1.073923 GGCTCCTTTGAAGTCCTTGGA 59.926 52.381 0.00 0.00 0.00 3.53
6548 7223 4.082517 GCTCCTTTGAAGTCCTTGGAAATC 60.083 45.833 0.00 0.00 0.00 2.17
6556 7231 8.940397 TTGAAGTCCTTGGAAATCTTTCTTAT 57.060 30.769 2.93 0.00 37.35 1.73
6558 7233 6.765915 AGTCCTTGGAAATCTTTCTTATGC 57.234 37.500 2.93 0.00 37.35 3.14
6588 7263 7.944554 TCCTTTGGTTCATAATAGGATTGGATC 59.055 37.037 0.00 0.00 0.00 3.36
6602 7277 4.594491 GGATTGGATCCCATAGGCATTTTT 59.406 41.667 9.90 0.00 43.88 1.94
6637 7312 8.307582 TCTTCTACTCTAACCTCATTTTAGGG 57.692 38.462 0.00 0.00 41.32 3.53
6638 7313 6.481434 TCTACTCTAACCTCATTTTAGGGC 57.519 41.667 0.00 0.00 41.32 5.19
6639 7314 6.203072 TCTACTCTAACCTCATTTTAGGGCT 58.797 40.000 0.00 0.00 41.32 5.19
6640 7315 5.360649 ACTCTAACCTCATTTTAGGGCTC 57.639 43.478 0.00 0.00 41.32 4.70
6641 7316 4.164413 ACTCTAACCTCATTTTAGGGCTCC 59.836 45.833 0.00 0.00 41.32 4.70
6642 7317 4.371681 TCTAACCTCATTTTAGGGCTCCT 58.628 43.478 0.00 0.00 41.32 3.69
6643 7318 4.788617 TCTAACCTCATTTTAGGGCTCCTT 59.211 41.667 0.00 0.00 41.32 3.36
6644 7319 4.404185 AACCTCATTTTAGGGCTCCTTT 57.596 40.909 0.00 0.00 41.32 3.11
6645 7320 3.701664 ACCTCATTTTAGGGCTCCTTTG 58.298 45.455 0.00 0.00 41.32 2.77
6646 7321 3.333680 ACCTCATTTTAGGGCTCCTTTGA 59.666 43.478 0.00 0.00 41.32 2.69
6647 7322 4.017130 ACCTCATTTTAGGGCTCCTTTGAT 60.017 41.667 0.00 0.00 41.32 2.57
6648 7323 4.958581 CCTCATTTTAGGGCTCCTTTGATT 59.041 41.667 0.00 0.00 34.61 2.57
6649 7324 5.068329 CCTCATTTTAGGGCTCCTTTGATTC 59.932 44.000 0.00 0.00 34.61 2.52
6650 7325 5.579047 TCATTTTAGGGCTCCTTTGATTCA 58.421 37.500 0.00 0.00 34.61 2.57
6651 7326 6.015918 TCATTTTAGGGCTCCTTTGATTCAA 58.984 36.000 0.00 0.00 34.61 2.69
6652 7327 6.496565 TCATTTTAGGGCTCCTTTGATTCAAA 59.503 34.615 11.19 11.19 34.61 2.69
6653 7328 6.933514 TTTTAGGGCTCCTTTGATTCAAAT 57.066 33.333 12.04 0.00 34.61 2.32
6654 7329 5.920193 TTAGGGCTCCTTTGATTCAAATG 57.080 39.130 12.04 9.74 34.61 2.32
6655 7330 4.051661 AGGGCTCCTTTGATTCAAATGA 57.948 40.909 12.04 13.18 32.70 2.57
6656 7331 4.419282 AGGGCTCCTTTGATTCAAATGAA 58.581 39.130 12.04 0.00 38.56 2.57
6657 7332 5.028131 AGGGCTCCTTTGATTCAAATGAAT 58.972 37.500 12.04 8.32 46.54 2.57
6658 7333 5.486419 AGGGCTCCTTTGATTCAAATGAATT 59.514 36.000 12.04 0.00 44.14 2.17
6659 7334 6.013119 AGGGCTCCTTTGATTCAAATGAATTT 60.013 34.615 12.04 0.25 44.14 1.82
6660 7335 6.656270 GGGCTCCTTTGATTCAAATGAATTTT 59.344 34.615 12.04 0.00 44.14 1.82
6661 7336 7.823799 GGGCTCCTTTGATTCAAATGAATTTTA 59.176 33.333 12.04 0.00 44.14 1.52
6662 7337 9.387257 GGCTCCTTTGATTCAAATGAATTTTAT 57.613 29.630 12.04 0.00 44.14 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.148689 GGAAATCAATTTCTGTGTGCAAGATTC 60.149 37.037 13.56 0.00 44.21 2.52
18 19 5.287035 GTGACGCTTGATGGAAATCAATTTC 59.713 40.000 6.88 6.88 44.08 2.17
34 35 2.138320 CTGTGATCTGTTGTGACGCTT 58.862 47.619 0.00 0.00 0.00 4.68
37 38 2.061773 GGACTGTGATCTGTTGTGACG 58.938 52.381 0.00 0.00 0.00 4.35
54 55 2.021355 TAGAAGAGGTCTCGTCGGAC 57.979 55.000 7.94 0.00 41.80 4.79
63 64 2.763448 ACTGCTGGTGATAGAAGAGGTC 59.237 50.000 0.00 0.00 0.00 3.85
76 77 3.058016 CGAAATTGTGATTGACTGCTGGT 60.058 43.478 0.00 0.00 0.00 4.00
78 79 4.151258 ACGAAATTGTGATTGACTGCTG 57.849 40.909 0.00 0.00 0.00 4.41
121 122 0.605319 CAGGCGAAAGGTAGTTGGCA 60.605 55.000 0.00 0.00 34.24 4.92
122 123 1.923227 GCAGGCGAAAGGTAGTTGGC 61.923 60.000 0.00 0.00 0.00 4.52
132 133 5.321959 TGATGATTTAATTGCAGGCGAAA 57.678 34.783 0.00 0.00 0.00 3.46
134 135 4.579753 TGATGATGATTTAATTGCAGGCGA 59.420 37.500 0.00 0.00 0.00 5.54
135 136 4.862350 TGATGATGATTTAATTGCAGGCG 58.138 39.130 0.00 0.00 0.00 5.52
137 138 7.438564 TCCAATGATGATGATTTAATTGCAGG 58.561 34.615 0.00 0.00 0.00 4.85
148 149 6.837048 TGTTGAAGGAATCCAATGATGATGAT 59.163 34.615 0.61 0.00 0.00 2.45
149 150 6.095860 GTGTTGAAGGAATCCAATGATGATGA 59.904 38.462 0.61 0.00 0.00 2.92
150 151 6.096423 AGTGTTGAAGGAATCCAATGATGATG 59.904 38.462 0.61 0.00 0.00 3.07
175 176 0.249573 GAACTGGAACGTGACGGGAA 60.250 55.000 10.66 0.00 0.00 3.97
180 181 1.798813 GATGTGGAACTGGAACGTGAC 59.201 52.381 0.00 0.00 38.04 3.67
191 192 5.989551 AAATTGCTTTGTTGATGTGGAAC 57.010 34.783 0.00 0.00 37.35 3.62
192 193 6.111382 TGAAAATTGCTTTGTTGATGTGGAA 58.889 32.000 0.00 0.00 0.00 3.53
193 194 5.668471 TGAAAATTGCTTTGTTGATGTGGA 58.332 33.333 0.00 0.00 0.00 4.02
194 195 5.524646 ACTGAAAATTGCTTTGTTGATGTGG 59.475 36.000 0.00 0.00 0.00 4.17
195 196 6.256104 TCACTGAAAATTGCTTTGTTGATGTG 59.744 34.615 0.00 0.00 0.00 3.21
196 197 6.339730 TCACTGAAAATTGCTTTGTTGATGT 58.660 32.000 0.00 0.00 0.00 3.06
207 208 8.761575 TGAAGGATAATTTCACTGAAAATTGC 57.238 30.769 8.28 2.60 38.82 3.56
253 254 0.745845 GCCGCCACTTGATCTGTCAT 60.746 55.000 0.00 0.00 33.56 3.06
257 258 2.125552 TCGCCGCCACTTGATCTG 60.126 61.111 0.00 0.00 0.00 2.90
258 259 2.125512 GTCGCCGCCACTTGATCT 60.126 61.111 0.00 0.00 0.00 2.75
274 275 1.374252 GATGTTCGTCTGGGTGCGT 60.374 57.895 0.00 0.00 0.00 5.24
276 277 2.740714 GCGATGTTCGTCTGGGTGC 61.741 63.158 0.00 0.00 42.81 5.01
279 280 2.100631 GGTGCGATGTTCGTCTGGG 61.101 63.158 0.00 0.00 42.81 4.45
280 281 2.100631 GGGTGCGATGTTCGTCTGG 61.101 63.158 0.00 0.00 42.81 3.86
281 282 2.100631 GGGGTGCGATGTTCGTCTG 61.101 63.158 0.00 0.00 42.81 3.51
282 283 2.264794 GGGGTGCGATGTTCGTCT 59.735 61.111 0.00 0.00 42.81 4.18
283 284 2.818274 GGGGGTGCGATGTTCGTC 60.818 66.667 0.00 0.00 42.81 4.20
286 287 0.105039 CTAGAGGGGGTGCGATGTTC 59.895 60.000 0.00 0.00 0.00 3.18
287 288 0.325296 TCTAGAGGGGGTGCGATGTT 60.325 55.000 0.00 0.00 0.00 2.71
288 289 0.757188 CTCTAGAGGGGGTGCGATGT 60.757 60.000 12.27 0.00 0.00 3.06
290 291 1.834822 GCTCTAGAGGGGGTGCGAT 60.835 63.158 21.23 0.00 0.00 4.58
291 292 2.442272 GCTCTAGAGGGGGTGCGA 60.442 66.667 21.23 0.00 0.00 5.10
292 293 2.759973 TGCTCTAGAGGGGGTGCG 60.760 66.667 21.23 0.00 0.00 5.34
293 294 2.736826 GGTGCTCTAGAGGGGGTGC 61.737 68.421 21.23 7.15 0.00 5.01
294 295 2.066999 GGGTGCTCTAGAGGGGGTG 61.067 68.421 21.23 0.00 0.00 4.61
295 296 2.369001 GGGTGCTCTAGAGGGGGT 59.631 66.667 21.23 0.00 0.00 4.95
296 297 2.446802 GGGGTGCTCTAGAGGGGG 60.447 72.222 21.23 0.00 0.00 5.40
326 343 1.304134 GAGCCCCACATTCCGGTTT 60.304 57.895 0.00 0.00 0.00 3.27
327 344 2.355115 GAGCCCCACATTCCGGTT 59.645 61.111 0.00 0.00 0.00 4.44
328 345 3.728373 GGAGCCCCACATTCCGGT 61.728 66.667 0.00 0.00 0.00 5.28
329 346 4.506255 GGGAGCCCCACATTCCGG 62.506 72.222 0.00 0.00 44.65 5.14
331 348 4.506255 CCGGGAGCCCCACATTCC 62.506 72.222 10.47 0.00 45.83 3.01
341 358 3.774599 ATGGAATTCGGCCGGGAGC 62.775 63.158 27.83 12.77 42.60 4.70
342 359 1.598130 GATGGAATTCGGCCGGGAG 60.598 63.158 27.83 0.00 0.00 4.30
344 361 1.453015 TTGATGGAATTCGGCCGGG 60.453 57.895 27.83 0.00 0.00 5.73
345 362 1.029408 TGTTGATGGAATTCGGCCGG 61.029 55.000 27.83 6.80 0.00 6.13
346 363 0.098728 GTGTTGATGGAATTCGGCCG 59.901 55.000 22.12 22.12 0.00 6.13
347 364 0.098728 CGTGTTGATGGAATTCGGCC 59.901 55.000 0.00 0.00 0.00 6.13
348 365 1.083489 TCGTGTTGATGGAATTCGGC 58.917 50.000 0.00 0.00 0.00 5.54
349 366 2.473868 CGTTCGTGTTGATGGAATTCGG 60.474 50.000 0.00 0.00 0.00 4.30
350 367 2.473868 CCGTTCGTGTTGATGGAATTCG 60.474 50.000 0.00 0.00 0.00 3.34
351 368 2.727916 GCCGTTCGTGTTGATGGAATTC 60.728 50.000 0.00 0.00 0.00 2.17
352 369 1.199097 GCCGTTCGTGTTGATGGAATT 59.801 47.619 0.00 0.00 0.00 2.17
353 370 0.802494 GCCGTTCGTGTTGATGGAAT 59.198 50.000 0.00 0.00 0.00 3.01
354 371 1.231958 GGCCGTTCGTGTTGATGGAA 61.232 55.000 0.00 0.00 0.00 3.53
355 372 1.669760 GGCCGTTCGTGTTGATGGA 60.670 57.895 0.00 0.00 0.00 3.41
356 373 1.635663 GAGGCCGTTCGTGTTGATGG 61.636 60.000 0.00 0.00 0.00 3.51
357 374 0.670546 AGAGGCCGTTCGTGTTGATG 60.671 55.000 0.00 0.00 0.00 3.07
358 375 0.034896 AAGAGGCCGTTCGTGTTGAT 59.965 50.000 0.00 0.00 0.00 2.57
359 376 0.599204 GAAGAGGCCGTTCGTGTTGA 60.599 55.000 0.00 0.00 0.00 3.18
360 377 1.566018 GGAAGAGGCCGTTCGTGTTG 61.566 60.000 13.03 0.00 0.00 3.33
361 378 1.301479 GGAAGAGGCCGTTCGTGTT 60.301 57.895 13.03 0.00 0.00 3.32
362 379 2.342648 GGAAGAGGCCGTTCGTGT 59.657 61.111 13.03 0.00 0.00 4.49
363 380 2.434359 GGGAAGAGGCCGTTCGTG 60.434 66.667 13.03 0.00 0.00 4.35
364 381 3.703127 GGGGAAGAGGCCGTTCGT 61.703 66.667 13.03 0.00 0.00 3.85
365 382 4.468689 GGGGGAAGAGGCCGTTCG 62.469 72.222 13.03 0.00 0.00 3.95
366 383 4.468689 CGGGGGAAGAGGCCGTTC 62.469 72.222 11.44 11.44 0.00 3.95
370 387 3.787001 CTGTCGGGGGAAGAGGCC 61.787 72.222 0.00 0.00 0.00 5.19
371 388 2.683933 TCTGTCGGGGGAAGAGGC 60.684 66.667 0.00 0.00 0.00 4.70
372 389 2.359967 GGTCTGTCGGGGGAAGAGG 61.360 68.421 0.00 0.00 0.00 3.69
373 390 2.359967 GGGTCTGTCGGGGGAAGAG 61.360 68.421 0.00 0.00 0.00 2.85
374 391 2.284405 GGGTCTGTCGGGGGAAGA 60.284 66.667 0.00 0.00 0.00 2.87
375 392 2.606519 TGGGTCTGTCGGGGGAAG 60.607 66.667 0.00 0.00 0.00 3.46
376 393 2.926242 GTGGGTCTGTCGGGGGAA 60.926 66.667 0.00 0.00 0.00 3.97
380 397 2.573609 GAATCCGTGGGTCTGTCGGG 62.574 65.000 0.00 0.00 43.75 5.14
381 398 1.153628 GAATCCGTGGGTCTGTCGG 60.154 63.158 0.00 0.00 44.76 4.79
382 399 0.037697 TTGAATCCGTGGGTCTGTCG 60.038 55.000 0.00 0.00 0.00 4.35
383 400 1.804748 GTTTGAATCCGTGGGTCTGTC 59.195 52.381 0.00 0.00 0.00 3.51
384 401 1.544759 GGTTTGAATCCGTGGGTCTGT 60.545 52.381 0.00 0.00 0.00 3.41
385 402 1.165270 GGTTTGAATCCGTGGGTCTG 58.835 55.000 0.00 0.00 0.00 3.51
386 403 0.037734 GGGTTTGAATCCGTGGGTCT 59.962 55.000 0.00 0.00 0.00 3.85
387 404 0.963856 GGGGTTTGAATCCGTGGGTC 60.964 60.000 0.00 0.00 0.00 4.46
388 405 1.076014 GGGGTTTGAATCCGTGGGT 59.924 57.895 0.00 0.00 0.00 4.51
389 406 0.540830 TTGGGGTTTGAATCCGTGGG 60.541 55.000 0.00 0.00 0.00 4.61
390 407 1.000394 GTTTGGGGTTTGAATCCGTGG 60.000 52.381 0.00 0.00 0.00 4.94
391 408 1.000394 GGTTTGGGGTTTGAATCCGTG 60.000 52.381 0.00 0.00 0.00 4.94
392 409 1.334160 GGTTTGGGGTTTGAATCCGT 58.666 50.000 0.00 0.00 0.00 4.69
393 410 0.606096 GGGTTTGGGGTTTGAATCCG 59.394 55.000 0.00 0.00 0.00 4.18
394 411 1.723288 TGGGTTTGGGGTTTGAATCC 58.277 50.000 0.00 0.00 0.00 3.01
395 412 2.038426 CCTTGGGTTTGGGGTTTGAATC 59.962 50.000 0.00 0.00 0.00 2.52
396 413 2.054021 CCTTGGGTTTGGGGTTTGAAT 58.946 47.619 0.00 0.00 0.00 2.57
397 414 1.273896 ACCTTGGGTTTGGGGTTTGAA 60.274 47.619 0.00 0.00 27.29 2.69
398 415 0.340208 ACCTTGGGTTTGGGGTTTGA 59.660 50.000 0.00 0.00 27.29 2.69
399 416 1.208706 AACCTTGGGTTTGGGGTTTG 58.791 50.000 0.00 0.00 44.33 2.93
400 417 3.742422 AACCTTGGGTTTGGGGTTT 57.258 47.368 0.00 0.00 44.33 3.27
450 467 3.647771 GTCGGGAGCCCCACCTTT 61.648 66.667 10.47 0.00 45.83 3.11
466 483 0.107081 TCGTGTTGGTGGAATTCGGT 59.893 50.000 0.00 0.00 0.00 4.69
490 507 3.253432 GGTTTTCAATCTGTGGGTCTGTC 59.747 47.826 0.00 0.00 0.00 3.51
523 550 4.011698 GGGCTTTGGATCATTTGCAAAAT 58.988 39.130 17.19 5.97 43.89 1.82
530 557 3.986996 CCTTTGGGCTTTGGATCATTT 57.013 42.857 0.00 0.00 0.00 2.32
580 607 0.249280 CCCTTTGGTTTTCCGTGTGC 60.249 55.000 0.00 0.00 44.36 4.57
773 825 4.779733 GAGGGAGTGGGGAGCGGA 62.780 72.222 0.00 0.00 0.00 5.54
789 841 4.791069 GGGGGTGGGGAGTAGCGA 62.791 72.222 0.00 0.00 0.00 4.93
791 843 4.791069 TCGGGGGTGGGGAGTAGC 62.791 72.222 0.00 0.00 0.00 3.58
793 845 0.771339 TTTTTCGGGGGTGGGGAGTA 60.771 55.000 0.00 0.00 0.00 2.59
794 846 1.440362 ATTTTTCGGGGGTGGGGAGT 61.440 55.000 0.00 0.00 0.00 3.85
796 848 0.191314 AAATTTTTCGGGGGTGGGGA 59.809 50.000 0.00 0.00 0.00 4.81
797 849 0.611200 GAAATTTTTCGGGGGTGGGG 59.389 55.000 0.00 0.00 0.00 4.96
798 850 1.343069 TGAAATTTTTCGGGGGTGGG 58.657 50.000 0.00 0.00 40.01 4.61
799 851 3.694043 ATTGAAATTTTTCGGGGGTGG 57.306 42.857 0.00 0.00 40.01 4.61
800 852 4.450757 GTCAATTGAAATTTTTCGGGGGTG 59.549 41.667 10.35 0.00 40.01 4.61
801 853 4.346709 AGTCAATTGAAATTTTTCGGGGGT 59.653 37.500 10.35 0.00 40.01 4.95
802 854 4.893608 AGTCAATTGAAATTTTTCGGGGG 58.106 39.130 10.35 0.00 40.01 5.40
803 855 4.929211 GGAGTCAATTGAAATTTTTCGGGG 59.071 41.667 10.35 0.00 40.01 5.73
804 856 4.621034 CGGAGTCAATTGAAATTTTTCGGG 59.379 41.667 10.35 0.00 40.01 5.14
805 857 4.089923 GCGGAGTCAATTGAAATTTTTCGG 59.910 41.667 10.35 7.01 40.01 4.30
806 858 4.679197 TGCGGAGTCAATTGAAATTTTTCG 59.321 37.500 10.35 8.59 40.01 3.46
807 859 6.710692 ATGCGGAGTCAATTGAAATTTTTC 57.289 33.333 10.35 0.00 37.69 2.29
879 1094 1.843376 ACCAGGACACCACCAGGAG 60.843 63.158 0.00 0.00 38.63 3.69
892 1107 3.717294 CGGAACCCCCTCACCAGG 61.717 72.222 0.00 0.00 39.98 4.45
893 1108 2.526046 AACGGAACCCCCTCACCAG 61.526 63.158 0.00 0.00 0.00 4.00
894 1109 2.448931 AACGGAACCCCCTCACCA 60.449 61.111 0.00 0.00 0.00 4.17
1464 1687 2.579201 GAGAGGCTGGCGTTGCTA 59.421 61.111 0.00 0.00 0.00 3.49
1479 1702 2.262915 GAGCACTGGGTGGACGAG 59.737 66.667 0.00 0.00 33.64 4.18
1512 1735 3.680196 ACAGCCGGGGTAGGAGGA 61.680 66.667 2.18 0.00 0.00 3.71
1527 1750 0.979665 CTCCTCCAGAAGAAGGCACA 59.020 55.000 0.00 0.00 0.00 4.57
1540 1763 4.179599 CCCTCCCCCTCCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1541 1764 4.179599 CCCCTCCCCCTCCTCCTC 62.180 77.778 0.00 0.00 0.00 3.71
1773 2011 3.785859 GCTGCCTCCGGATGTGGA 61.786 66.667 12.29 1.34 36.37 4.02
1774 2012 3.626996 TTGCTGCCTCCGGATGTGG 62.627 63.158 3.57 3.72 0.00 4.17
1775 2013 2.046023 TTGCTGCCTCCGGATGTG 60.046 61.111 3.57 0.82 0.00 3.21
1776 2014 2.270205 CTTGCTGCCTCCGGATGT 59.730 61.111 3.57 0.00 0.00 3.06
1777 2015 1.971505 TACCTTGCTGCCTCCGGATG 61.972 60.000 3.57 2.55 0.00 3.51
1778 2016 1.689233 TACCTTGCTGCCTCCGGAT 60.689 57.895 3.57 0.00 0.00 4.18
1854 2098 1.204146 TCAGACCCTGCATAACCTCC 58.796 55.000 0.00 0.00 0.00 4.30
1859 2103 2.239402 TGCTGATTCAGACCCTGCATAA 59.761 45.455 17.87 0.00 32.44 1.90
1941 2185 2.193532 GACTGGATCGGAGTGAGCA 58.806 57.895 0.92 0.00 33.60 4.26
1960 2204 1.939974 TCGCTGGCATAGTCATTCAC 58.060 50.000 0.00 0.00 0.00 3.18
1999 2243 2.886523 TGAACACTGGAATTTGCTCAGG 59.113 45.455 0.00 0.00 33.19 3.86
2000 2244 4.216902 TCATGAACACTGGAATTTGCTCAG 59.783 41.667 0.00 0.00 34.91 3.35
2006 2250 3.508793 CAGGCTCATGAACACTGGAATTT 59.491 43.478 11.26 0.00 0.00 1.82
2010 2254 0.321919 GCAGGCTCATGAACACTGGA 60.322 55.000 17.55 0.00 0.00 3.86
2079 2323 0.715987 ACCCATAAGCCCCCATTTGT 59.284 50.000 0.00 0.00 0.00 2.83
2224 2477 1.812686 AATTGCTGCTGCTGGTGGTG 61.813 55.000 17.00 0.00 40.48 4.17
2225 2478 1.532316 AATTGCTGCTGCTGGTGGT 60.532 52.632 17.00 0.00 40.48 4.16
2226 2479 1.080093 CAATTGCTGCTGCTGGTGG 60.080 57.895 17.00 0.00 40.48 4.61
2263 2516 5.327616 TGGTTAAATCCATAAGTCGACGA 57.672 39.130 10.46 2.41 31.96 4.20
2337 2593 2.148768 TGTTGATGAGAGCTTGCAGTG 58.851 47.619 0.00 0.00 0.00 3.66
2477 2733 1.450312 CGGAGCACTTGTCCATCCC 60.450 63.158 0.00 0.00 33.14 3.85
2649 2905 2.675348 GGTGTTGCTCTGAGAGTATTGC 59.325 50.000 11.64 0.00 31.39 3.56
2691 2947 0.839946 GAGGGGCTATCTTTGGCTCA 59.160 55.000 0.00 0.00 29.75 4.26
2708 2964 2.165030 GGTGGCATTGATTCAGTTGGAG 59.835 50.000 0.00 0.00 0.00 3.86
2736 2992 1.843206 TGCATATAAGGACTGGCCACA 59.157 47.619 0.00 0.00 40.02 4.17
2759 3015 1.518056 AACGTTGGCATGCTGGACAG 61.518 55.000 18.92 11.70 0.00 3.51
2935 3191 4.326826 TCCTTGTGATAAACTTCAGGCAG 58.673 43.478 0.00 0.00 0.00 4.85
2974 3230 2.358939 TTAGCGTTCGAAGGAGGAAC 57.641 50.000 21.30 3.38 40.23 3.62
3007 3263 0.958382 GCCAATGCTGGTGTCGGTAA 60.958 55.000 0.00 0.00 45.53 2.85
3022 3278 0.537143 ACTGGAGCGTGATTTGCCAA 60.537 50.000 0.00 0.00 0.00 4.52
3025 3281 1.014044 TCGACTGGAGCGTGATTTGC 61.014 55.000 0.00 0.00 0.00 3.68
3141 3397 3.159065 TGGGAATGGGGATCCTTAGAA 57.841 47.619 12.58 0.00 37.14 2.10
3144 3400 3.600617 AGTTTTGGGAATGGGGATCCTTA 59.399 43.478 12.58 0.88 37.14 2.69
3247 3503 4.981806 TTGAACCTTTGACAAACTGAGG 57.018 40.909 0.00 0.00 0.00 3.86
3297 3553 6.356556 ACTCATTAAGCACATATACTGGCAA 58.643 36.000 0.00 0.00 0.00 4.52
3315 3571 7.458409 AAGCATTCACAACTTATGACTCATT 57.542 32.000 0.00 0.00 0.00 2.57
3345 3601 4.639078 TCACCTGGATTCATGAAAGACA 57.361 40.909 13.09 10.57 0.00 3.41
3394 3650 0.319728 CGGCTAGACCATCCTCCATG 59.680 60.000 0.00 0.00 39.03 3.66
3450 3706 7.926555 CGTCTACTTTATTAGTGACATTCCCAT 59.073 37.037 0.00 0.00 37.73 4.00
3503 3759 9.698309 CGTATATGAACTTCTAAGGAATCACAT 57.302 33.333 0.00 0.00 0.00 3.21
3504 3760 8.692710 ACGTATATGAACTTCTAAGGAATCACA 58.307 33.333 0.00 0.00 0.00 3.58
3505 3761 9.530633 AACGTATATGAACTTCTAAGGAATCAC 57.469 33.333 0.00 0.00 0.00 3.06
3506 3762 9.745880 GAACGTATATGAACTTCTAAGGAATCA 57.254 33.333 0.00 0.00 0.00 2.57
3507 3763 9.968870 AGAACGTATATGAACTTCTAAGGAATC 57.031 33.333 0.00 0.00 0.00 2.52
3528 3784 5.597813 AGTGCTAAAGATGAAACAGAACG 57.402 39.130 0.00 0.00 0.00 3.95
3543 3799 9.772973 TTCTCTTGTTAGATTGTTAAGTGCTAA 57.227 29.630 0.00 0.00 0.00 3.09
3544 3800 9.772973 TTTCTCTTGTTAGATTGTTAAGTGCTA 57.227 29.630 0.00 0.00 0.00 3.49
3554 3815 6.072286 ACCTGCACATTTCTCTTGTTAGATTG 60.072 38.462 0.00 0.00 0.00 2.67
3557 3818 4.973168 ACCTGCACATTTCTCTTGTTAGA 58.027 39.130 0.00 0.00 0.00 2.10
3605 3866 1.202758 TGCGACTGGTTGTCCTGAAAT 60.203 47.619 0.00 0.00 42.49 2.17
3623 3884 1.094073 AGGCGTTCATGCTCATCTGC 61.094 55.000 0.00 0.00 34.52 4.26
3636 3897 1.349688 TGATTGTAACCTGGAGGCGTT 59.650 47.619 0.00 0.00 39.32 4.84
3643 3904 4.559862 AGAGTTCCTGATTGTAACCTGG 57.440 45.455 0.00 0.00 0.00 4.45
3691 3953 8.919145 TGGTTGGTAAAGAACATTACTTTGAAT 58.081 29.630 0.00 0.00 37.96 2.57
3693 3955 7.339721 TGTGGTTGGTAAAGAACATTACTTTGA 59.660 33.333 0.00 0.00 37.96 2.69
3908 4174 8.757877 ACAGGCATAAGCAAATAAAAGGAAATA 58.242 29.630 0.00 0.00 44.61 1.40
4034 4300 1.429148 GCCCATCTAGAACAACGCCG 61.429 60.000 0.00 0.00 0.00 6.46
4085 4351 5.452776 CGTCCTAAGTGAGCCATTAACCATA 60.453 44.000 0.00 0.00 0.00 2.74
4481 4747 6.308766 GCCAGCAATAGTACAAAACAGAATTG 59.691 38.462 0.00 0.00 32.44 2.32
4482 4748 6.209391 AGCCAGCAATAGTACAAAACAGAATT 59.791 34.615 0.00 0.00 0.00 2.17
4622 4892 9.236006 AGTATGATGGGATATTGATGCTAAAAC 57.764 33.333 0.00 0.00 0.00 2.43
4636 4906 8.324306 CACTGTATATTCCAAGTATGATGGGAT 58.676 37.037 0.00 0.00 39.56 3.85
4641 4911 9.060347 CAAAGCACTGTATATTCCAAGTATGAT 57.940 33.333 0.00 0.00 0.00 2.45
4656 4926 5.126779 TGATTACCACAACAAAGCACTGTA 58.873 37.500 0.00 0.00 0.00 2.74
4661 4931 5.948758 TCCATATGATTACCACAACAAAGCA 59.051 36.000 3.65 0.00 0.00 3.91
4673 4943 6.349611 GCCCACATGAATGTCCATATGATTAC 60.350 42.308 3.65 0.19 39.39 1.89
4694 4964 1.943968 GCAACAGTACATTCTCGCCCA 60.944 52.381 0.00 0.00 0.00 5.36
4698 4968 2.416547 CCCAAGCAACAGTACATTCTCG 59.583 50.000 0.00 0.00 0.00 4.04
4701 4971 2.636768 GCCCAAGCAACAGTACATTC 57.363 50.000 0.00 0.00 39.53 2.67
4750 5020 5.605069 TCCCCGGACTAATCTAAATCAATCA 59.395 40.000 0.73 0.00 0.00 2.57
4751 5021 6.110411 TCCCCGGACTAATCTAAATCAATC 57.890 41.667 0.73 0.00 0.00 2.67
4784 5056 5.590663 AGATGCCTTAAGGTTAGCTAAAAGC 59.409 40.000 22.55 0.00 38.46 3.51
4785 5057 7.201741 GGAAGATGCCTTAAGGTTAGCTAAAAG 60.202 40.741 22.55 8.11 37.57 2.27
4786 5058 6.602009 GGAAGATGCCTTAAGGTTAGCTAAAA 59.398 38.462 22.55 0.00 37.57 1.52
4787 5059 6.120220 GGAAGATGCCTTAAGGTTAGCTAAA 58.880 40.000 22.55 0.00 37.57 1.85
4788 5060 5.681639 GGAAGATGCCTTAAGGTTAGCTAA 58.318 41.667 22.55 0.86 37.57 3.09
4789 5061 4.202223 CGGAAGATGCCTTAAGGTTAGCTA 60.202 45.833 22.55 3.68 37.57 3.32
4790 5062 3.432326 CGGAAGATGCCTTAAGGTTAGCT 60.432 47.826 22.55 16.37 37.57 3.32
4791 5063 2.872858 CGGAAGATGCCTTAAGGTTAGC 59.127 50.000 22.55 14.46 37.57 3.09
4796 5068 2.678336 GTTGACGGAAGATGCCTTAAGG 59.322 50.000 17.81 17.81 38.53 2.69
4815 5087 1.518056 CGCATGTTCCCTGCAGTGTT 61.518 55.000 13.81 0.00 39.64 3.32
4822 5094 2.613026 TATACCACGCATGTTCCCTG 57.387 50.000 0.00 0.00 0.00 4.45
4824 5096 5.619086 GCATTATTATACCACGCATGTTCCC 60.619 44.000 0.00 0.00 0.00 3.97
4832 5104 3.440173 AGCCATGCATTATTATACCACGC 59.560 43.478 0.00 0.00 0.00 5.34
4833 5105 5.874810 AGTAGCCATGCATTATTATACCACG 59.125 40.000 0.00 0.00 0.00 4.94
4876 5148 7.918562 GGCAAACAAGTGATTCTTTAGTACAAA 59.081 33.333 0.00 0.00 33.63 2.83
4877 5149 7.067615 TGGCAAACAAGTGATTCTTTAGTACAA 59.932 33.333 0.00 0.00 33.63 2.41
4878 5150 6.544197 TGGCAAACAAGTGATTCTTTAGTACA 59.456 34.615 0.00 0.00 33.63 2.90
4879 5151 6.966021 TGGCAAACAAGTGATTCTTTAGTAC 58.034 36.000 0.00 0.00 33.63 2.73
4920 5344 9.109393 GCATGGATGTTTAGTAGATCAGTAAAA 57.891 33.333 0.00 0.00 34.53 1.52
5158 5605 3.132824 ACTTGACTTTTGAAAGCCCAAGG 59.867 43.478 25.61 16.20 44.84 3.61
5323 5770 4.093850 GTGCAAGTTATACGTAAACCAGGG 59.906 45.833 0.00 0.00 0.00 4.45
5326 5773 5.299148 AGTGTGCAAGTTATACGTAAACCA 58.701 37.500 0.00 0.00 0.00 3.67
5538 6012 1.267806 CACAATGCCACCTGACAGTTC 59.732 52.381 0.93 0.00 0.00 3.01
5796 6274 5.975693 ATCAGCACCGGATTTTCTTAAAA 57.024 34.783 9.46 0.00 34.41 1.52
5858 6336 3.580193 CCGACCGACCGACGCTAT 61.580 66.667 0.00 0.00 41.07 2.97
5874 6356 4.292836 ACAGATAGATAGACCCTAGGGACC 59.707 50.000 35.38 23.50 38.96 4.46
5941 6423 3.732849 GGTTGGGAGGGAGGGCTG 61.733 72.222 0.00 0.00 0.00 4.85
6113 6595 0.178891 AAGAGAAGGCAGGGGAGACA 60.179 55.000 0.00 0.00 0.00 3.41
6114 6596 0.251634 CAAGAGAAGGCAGGGGAGAC 59.748 60.000 0.00 0.00 0.00 3.36
6115 6597 0.178891 ACAAGAGAAGGCAGGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
6116 6598 0.035630 CACAAGAGAAGGCAGGGGAG 60.036 60.000 0.00 0.00 0.00 4.30
6117 6599 1.492133 CCACAAGAGAAGGCAGGGGA 61.492 60.000 0.00 0.00 0.00 4.81
6118 6600 1.001641 CCACAAGAGAAGGCAGGGG 60.002 63.158 0.00 0.00 0.00 4.79
6119 6601 1.001641 CCCACAAGAGAAGGCAGGG 60.002 63.158 0.00 0.00 0.00 4.45
6120 6602 0.984230 TACCCACAAGAGAAGGCAGG 59.016 55.000 0.00 0.00 0.00 4.85
6121 6603 2.859165 TTACCCACAAGAGAAGGCAG 57.141 50.000 0.00 0.00 0.00 4.85
6122 6604 4.919774 TTATTACCCACAAGAGAAGGCA 57.080 40.909 0.00 0.00 0.00 4.75
6123 6605 4.511826 CGATTATTACCCACAAGAGAAGGC 59.488 45.833 0.00 0.00 0.00 4.35
6128 6610 5.980116 CAGACTCGATTATTACCCACAAGAG 59.020 44.000 0.00 0.00 0.00 2.85
6150 6632 1.260561 CGACCAACGACTTCCAAACAG 59.739 52.381 0.00 0.00 45.77 3.16
6165 6647 1.906824 GACCTGACCTGACCGACCA 60.907 63.158 0.00 0.00 0.00 4.02
6169 6651 1.878656 GACCTGACCTGACCTGACCG 61.879 65.000 0.00 0.00 0.00 4.79
6170 6652 0.832135 TGACCTGACCTGACCTGACC 60.832 60.000 0.00 0.00 0.00 4.02
6172 6654 0.188587 ACTGACCTGACCTGACCTGA 59.811 55.000 0.00 0.00 0.00 3.86
6173 6655 0.605589 GACTGACCTGACCTGACCTG 59.394 60.000 0.00 0.00 0.00 4.00
6174 6656 0.485099 AGACTGACCTGACCTGACCT 59.515 55.000 0.00 0.00 0.00 3.85
6179 6661 2.685106 TCTTCAGACTGACCTGACCT 57.315 50.000 4.15 0.00 42.33 3.85
6184 6669 2.975489 ACCACATTCTTCAGACTGACCT 59.025 45.455 4.15 0.00 0.00 3.85
6245 6731 3.287222 CCTCAACTGACAGTTCCCAAAA 58.713 45.455 18.02 0.00 36.03 2.44
6273 6759 6.531240 CGAAAAACCAAGCATATACAAGCAAT 59.469 34.615 0.00 0.00 0.00 3.56
6398 6888 7.282224 GGGAACTACATGCTAACAATGTAATCA 59.718 37.037 0.00 0.00 31.35 2.57
6399 6889 7.499232 AGGGAACTACATGCTAACAATGTAATC 59.501 37.037 0.00 0.00 40.61 1.75
6400 6890 7.346471 AGGGAACTACATGCTAACAATGTAAT 58.654 34.615 0.00 0.00 40.61 1.89
6405 6895 5.045578 ACAGAGGGAACTACATGCTAACAAT 60.046 40.000 0.00 0.00 44.43 2.71
6410 6900 5.248477 AGAAAACAGAGGGAACTACATGCTA 59.752 40.000 0.00 0.00 44.43 3.49
6418 6908 6.220608 TTCAGGCAGAAAACAGAGGGAACT 62.221 45.833 0.00 0.00 36.87 3.01
6444 6934 0.239347 CAAGTACAACAGCTGCAGCC 59.761 55.000 34.39 17.41 43.38 4.85
6452 6942 0.693049 AGGAGCCCCAAGTACAACAG 59.307 55.000 0.00 0.00 33.88 3.16
6463 6953 0.391793 CTTCGACTCAAAGGAGCCCC 60.392 60.000 0.00 0.00 45.42 5.80
6504 7179 1.730612 CCTAAGAAAACTTCCCGACGC 59.269 52.381 0.00 0.00 0.00 5.19
6508 7183 2.357075 GAGCCCTAAGAAAACTTCCCG 58.643 52.381 0.00 0.00 0.00 5.14
6514 7189 4.827835 ACTTCAAAGGAGCCCTAAGAAAAC 59.172 41.667 8.42 0.00 31.13 2.43
6516 7191 4.506802 GGACTTCAAAGGAGCCCTAAGAAA 60.507 45.833 8.42 0.00 31.13 2.52
6544 7219 6.071165 CCAAAGGACCAGCATAAGAAAGATTT 60.071 38.462 0.00 0.00 0.00 2.17
6548 7223 4.082125 ACCAAAGGACCAGCATAAGAAAG 58.918 43.478 0.00 0.00 0.00 2.62
6556 7231 3.517296 TTATGAACCAAAGGACCAGCA 57.483 42.857 0.00 0.00 0.00 4.41
6558 7233 6.001449 TCCTATTATGAACCAAAGGACCAG 57.999 41.667 0.00 0.00 0.00 4.00
6588 7263 8.591072 AGATTTCATATGAAAAATGCCTATGGG 58.409 33.333 29.42 0.00 45.81 4.00
6616 7291 6.463190 GGAGCCCTAAAATGAGGTTAGAGTAG 60.463 46.154 0.00 0.00 34.45 2.57
6617 7292 5.365895 GGAGCCCTAAAATGAGGTTAGAGTA 59.634 44.000 0.00 0.00 34.45 2.59
6618 7293 4.164413 GGAGCCCTAAAATGAGGTTAGAGT 59.836 45.833 0.00 0.00 34.45 3.24
6619 7294 4.410555 AGGAGCCCTAAAATGAGGTTAGAG 59.589 45.833 0.00 0.00 34.45 2.43
6620 7295 4.371681 AGGAGCCCTAAAATGAGGTTAGA 58.628 43.478 0.00 0.00 34.45 2.10
6621 7296 4.779993 AGGAGCCCTAAAATGAGGTTAG 57.220 45.455 0.00 0.00 34.45 2.34
6622 7297 5.014755 TCAAAGGAGCCCTAAAATGAGGTTA 59.985 40.000 0.00 0.00 34.45 2.85
6623 7298 4.089361 CAAAGGAGCCCTAAAATGAGGTT 58.911 43.478 0.00 0.00 34.45 3.50
6624 7299 3.333680 TCAAAGGAGCCCTAAAATGAGGT 59.666 43.478 0.00 0.00 34.45 3.85
6625 7300 3.968265 TCAAAGGAGCCCTAAAATGAGG 58.032 45.455 0.00 0.00 36.23 3.86
6626 7301 5.653769 TGAATCAAAGGAGCCCTAAAATGAG 59.346 40.000 0.00 0.00 31.13 2.90
6627 7302 5.579047 TGAATCAAAGGAGCCCTAAAATGA 58.421 37.500 0.00 0.00 31.13 2.57
6628 7303 5.920193 TGAATCAAAGGAGCCCTAAAATG 57.080 39.130 0.00 0.00 31.13 2.32
6629 7304 6.933514 TTTGAATCAAAGGAGCCCTAAAAT 57.066 33.333 4.03 0.00 31.13 1.82
6630 7305 6.496565 TCATTTGAATCAAAGGAGCCCTAAAA 59.503 34.615 17.60 0.00 38.83 1.52
6631 7306 6.015918 TCATTTGAATCAAAGGAGCCCTAAA 58.984 36.000 17.60 0.00 38.83 1.85
6632 7307 5.579047 TCATTTGAATCAAAGGAGCCCTAA 58.421 37.500 17.60 0.00 38.83 2.69
6633 7308 5.191727 TCATTTGAATCAAAGGAGCCCTA 57.808 39.130 17.60 0.00 38.83 3.53
6634 7309 4.051661 TCATTTGAATCAAAGGAGCCCT 57.948 40.909 17.60 0.00 38.83 5.19
6635 7310 4.806640 TTCATTTGAATCAAAGGAGCCC 57.193 40.909 19.97 0.00 43.24 5.19
6636 7311 7.677454 AAAATTCATTTGAATCAAAGGAGCC 57.323 32.000 19.97 0.00 43.24 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.