Multiple sequence alignment - TraesCS7A01G511000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G511000 chr7A 100.000 2744 0 0 1 2744 698728820 698731563 0.000000e+00 5068
1 TraesCS7A01G511000 chr7A 86.053 1140 130 12 756 1877 698744484 698745612 0.000000e+00 1197
2 TraesCS7A01G511000 chr7A 87.370 673 74 7 1214 1877 698822554 698823224 0.000000e+00 761
3 TraesCS7A01G511000 chr7A 87.221 673 76 6 1214 1877 698954857 698955528 0.000000e+00 758
4 TraesCS7A01G511000 chr7A 100.000 368 0 0 1876 2243 292821495 292821128 0.000000e+00 680
5 TraesCS7A01G511000 chr7A 88.356 292 23 4 2243 2530 698745607 698745891 9.410000e-90 340
6 TraesCS7A01G511000 chr7A 87.671 292 25 4 2243 2530 698823219 698823503 2.040000e-86 329
7 TraesCS7A01G511000 chr7A 86.942 291 28 4 2243 2530 698955523 698955806 4.410000e-83 318
8 TraesCS7A01G511000 chr7D 93.078 1358 82 3 464 1820 606657272 606658618 0.000000e+00 1977
9 TraesCS7A01G511000 chr7D 87.328 1381 125 19 526 1877 606684122 606685481 0.000000e+00 1535
10 TraesCS7A01G511000 chr7D 87.091 519 34 9 2243 2740 606658650 606659156 8.580000e-155 556
11 TraesCS7A01G511000 chr7D 92.549 255 11 7 1 251 606654217 606654467 2.600000e-95 359
12 TraesCS7A01G511000 chr7D 88.055 293 23 4 2243 2530 606685476 606685761 1.220000e-88 337
13 TraesCS7A01G511000 chr7D 96.753 154 4 1 460 613 606656432 606656584 3.510000e-64 255
14 TraesCS7A01G511000 chr7B 92.977 1367 76 3 463 1820 690904278 690905633 0.000000e+00 1975
15 TraesCS7A01G511000 chr7B 99.465 374 1 1 1872 2244 740661106 740661479 0.000000e+00 678
16 TraesCS7A01G511000 chr7B 86.312 526 37 12 2243 2740 690905665 690906183 8.640000e-150 540
17 TraesCS7A01G511000 chr7B 91.603 393 27 4 2327 2719 690936274 690936660 3.110000e-149 538
18 TraesCS7A01G511000 chr7B 81.818 407 62 9 539 939 691027801 691028201 5.660000e-87 331
19 TraesCS7A01G511000 chr1A 99.208 379 2 1 1865 2243 146949125 146948748 0.000000e+00 682
20 TraesCS7A01G511000 chr5B 99.730 371 1 0 1876 2246 570981809 570982179 0.000000e+00 680
21 TraesCS7A01G511000 chr5B 99.728 368 1 0 1876 2243 234297936 234297569 0.000000e+00 675
22 TraesCS7A01G511000 chr5B 99.461 371 1 1 1874 2244 588769449 588769080 0.000000e+00 673
23 TraesCS7A01G511000 chr3A 99.730 370 1 0 1875 2244 158176448 158176817 0.000000e+00 678
24 TraesCS7A01G511000 chr3A 98.939 377 4 0 1876 2252 158181150 158181526 0.000000e+00 675
25 TraesCS7A01G511000 chr3A 76.717 1194 237 25 650 1830 562914369 562915534 6.450000e-176 627
26 TraesCS7A01G511000 chr3A 81.988 694 117 6 1182 1870 563395066 563395756 1.420000e-162 582
27 TraesCS7A01G511000 chr4A 99.198 374 2 1 1871 2244 662629951 662630323 0.000000e+00 673
28 TraesCS7A01G511000 chr3D 76.518 1235 246 29 650 1870 425152249 425151045 3.850000e-178 634
29 TraesCS7A01G511000 chr3D 85.593 118 15 2 699 815 9122056 9122172 3.710000e-24 122
30 TraesCS7A01G511000 chr6B 78.838 241 31 6 2519 2740 322068436 322068675 7.920000e-31 145
31 TraesCS7A01G511000 chr2D 82.000 150 27 0 673 822 621590007 621589858 7.980000e-26 128
32 TraesCS7A01G511000 chr2B 82.979 141 24 0 678 818 762957752 762957612 7.980000e-26 128
33 TraesCS7A01G511000 chr3B 81.013 158 26 4 660 815 11469600 11469755 3.710000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G511000 chr7A 698728820 698731563 2743 False 5068.00 5068 100.00000 1 2744 1 chr7A.!!$F1 2743
1 TraesCS7A01G511000 chr7A 698744484 698745891 1407 False 768.50 1197 87.20450 756 2530 2 chr7A.!!$F2 1774
2 TraesCS7A01G511000 chr7A 698822554 698823503 949 False 545.00 761 87.52050 1214 2530 2 chr7A.!!$F3 1316
3 TraesCS7A01G511000 chr7A 698954857 698955806 949 False 538.00 758 87.08150 1214 2530 2 chr7A.!!$F4 1316
4 TraesCS7A01G511000 chr7D 606684122 606685761 1639 False 936.00 1535 87.69150 526 2530 2 chr7D.!!$F2 2004
5 TraesCS7A01G511000 chr7D 606654217 606659156 4939 False 786.75 1977 92.36775 1 2740 4 chr7D.!!$F1 2739
6 TraesCS7A01G511000 chr7B 690904278 690906183 1905 False 1257.50 1975 89.64450 463 2740 2 chr7B.!!$F4 2277
7 TraesCS7A01G511000 chr3A 562914369 562915534 1165 False 627.00 627 76.71700 650 1830 1 chr3A.!!$F3 1180
8 TraesCS7A01G511000 chr3A 563395066 563395756 690 False 582.00 582 81.98800 1182 1870 1 chr3A.!!$F4 688
9 TraesCS7A01G511000 chr3D 425151045 425152249 1204 True 634.00 634 76.51800 650 1870 1 chr3D.!!$R1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 426 0.248458 CTCTCTCCTTTCTCTCGCGC 60.248 60.0 0.0 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 4620 0.027324 CGAACTACGTAGTCGAGGCC 59.973 60.0 27.51 11.92 43.93 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.104817 GGTAGTTGGGGCAAATAGTGTAGTA 60.105 44.000 0.00 0.00 0.00 1.82
66 67 2.484241 GGGCAAATAGTGTAGTACCCGG 60.484 54.545 0.00 0.00 0.00 5.73
71 72 4.332428 AATAGTGTAGTACCCGGATTGC 57.668 45.455 0.73 0.00 0.00 3.56
92 95 6.573664 TGCTATTTTTGCAGTCTTACATGT 57.426 33.333 2.69 2.69 35.31 3.21
136 140 6.086222 TCGATTAAATCTTGCACTGCTTTTC 58.914 36.000 1.98 0.00 0.00 2.29
169 173 9.104965 GGTATATCTTGCACTGTTTTGTGTATA 57.895 33.333 0.00 0.00 39.89 1.47
171 175 5.940192 TCTTGCACTGTTTTGTGTATAGG 57.060 39.130 0.00 0.00 39.89 2.57
174 178 6.320164 TCTTGCACTGTTTTGTGTATAGGTTT 59.680 34.615 0.00 0.00 39.89 3.27
179 183 7.657336 CACTGTTTTGTGTATAGGTTTCCATT 58.343 34.615 0.00 0.00 33.61 3.16
180 184 7.594758 CACTGTTTTGTGTATAGGTTTCCATTG 59.405 37.037 0.00 0.00 33.61 2.82
185 189 7.873719 TTGTGTATAGGTTTCCATTGGTATG 57.126 36.000 1.86 0.00 0.00 2.39
332 336 9.450807 AAATGATAGAAACGACAACTCAAAAAG 57.549 29.630 0.00 0.00 0.00 2.27
333 337 6.427150 TGATAGAAACGACAACTCAAAAAGC 58.573 36.000 0.00 0.00 0.00 3.51
335 339 2.863401 AACGACAACTCAAAAAGCCC 57.137 45.000 0.00 0.00 0.00 5.19
336 340 1.757682 ACGACAACTCAAAAAGCCCA 58.242 45.000 0.00 0.00 0.00 5.36
337 341 2.096248 ACGACAACTCAAAAAGCCCAA 58.904 42.857 0.00 0.00 0.00 4.12
338 342 2.693074 ACGACAACTCAAAAAGCCCAAT 59.307 40.909 0.00 0.00 0.00 3.16
339 343 3.052036 CGACAACTCAAAAAGCCCAATG 58.948 45.455 0.00 0.00 0.00 2.82
342 346 3.181466 ACAACTCAAAAAGCCCAATGGAC 60.181 43.478 0.00 0.00 0.00 4.02
343 347 1.970640 ACTCAAAAAGCCCAATGGACC 59.029 47.619 0.00 0.00 0.00 4.46
344 348 1.969923 CTCAAAAAGCCCAATGGACCA 59.030 47.619 0.00 0.00 0.00 4.02
345 349 2.368221 CTCAAAAAGCCCAATGGACCAA 59.632 45.455 0.00 0.00 0.00 3.67
346 350 2.103941 TCAAAAAGCCCAATGGACCAAC 59.896 45.455 0.00 0.00 0.00 3.77
347 351 1.799933 AAAAGCCCAATGGACCAACA 58.200 45.000 0.00 0.00 0.00 3.33
348 352 1.047801 AAAGCCCAATGGACCAACAC 58.952 50.000 0.00 0.00 0.00 3.32
349 353 1.178534 AAGCCCAATGGACCAACACG 61.179 55.000 0.00 0.00 0.00 4.49
350 354 2.961768 CCCAATGGACCAACACGC 59.038 61.111 0.00 0.00 0.00 5.34
351 355 1.900981 CCCAATGGACCAACACGCA 60.901 57.895 0.00 0.00 0.00 5.24
352 356 1.285641 CCAATGGACCAACACGCAC 59.714 57.895 0.00 0.00 0.00 5.34
353 357 1.451337 CCAATGGACCAACACGCACA 61.451 55.000 0.00 0.00 0.00 4.57
354 358 0.317770 CAATGGACCAACACGCACAC 60.318 55.000 0.00 0.00 0.00 3.82
355 359 1.452145 AATGGACCAACACGCACACC 61.452 55.000 0.00 0.00 0.00 4.16
356 360 3.645975 GGACCAACACGCACACCG 61.646 66.667 0.00 0.00 44.21 4.94
357 361 3.645975 GACCAACACGCACACCGG 61.646 66.667 0.00 0.00 42.52 5.28
358 362 4.476752 ACCAACACGCACACCGGT 62.477 61.111 0.00 0.00 42.52 5.28
359 363 3.206246 CCAACACGCACACCGGTT 61.206 61.111 2.97 0.00 42.52 4.44
360 364 2.024022 CAACACGCACACCGGTTG 59.976 61.111 2.97 8.48 42.52 3.77
361 365 3.206246 AACACGCACACCGGTTGG 61.206 61.111 2.97 0.00 42.52 3.77
362 366 3.683966 AACACGCACACCGGTTGGA 62.684 57.895 2.97 0.00 42.52 3.53
363 367 3.345808 CACGCACACCGGTTGGAG 61.346 66.667 2.97 4.09 42.52 3.86
364 368 4.619227 ACGCACACCGGTTGGAGG 62.619 66.667 2.97 0.00 42.52 4.30
365 369 4.308458 CGCACACCGGTTGGAGGA 62.308 66.667 2.97 0.00 39.21 3.71
366 370 2.351276 GCACACCGGTTGGAGGAT 59.649 61.111 2.97 0.00 39.21 3.24
367 371 1.303317 GCACACCGGTTGGAGGATT 60.303 57.895 2.97 0.00 39.21 3.01
368 372 0.893727 GCACACCGGTTGGAGGATTT 60.894 55.000 2.97 0.00 39.21 2.17
369 373 0.881118 CACACCGGTTGGAGGATTTG 59.119 55.000 2.97 0.00 39.21 2.32
370 374 0.251165 ACACCGGTTGGAGGATTTGG 60.251 55.000 2.97 0.00 39.21 3.28
371 375 0.965363 CACCGGTTGGAGGATTTGGG 60.965 60.000 2.97 0.00 39.21 4.12
372 376 2.052104 CCGGTTGGAGGATTTGGGC 61.052 63.158 0.00 0.00 37.49 5.36
373 377 1.000896 CGGTTGGAGGATTTGGGCT 60.001 57.895 0.00 0.00 0.00 5.19
374 378 0.611896 CGGTTGGAGGATTTGGGCTT 60.612 55.000 0.00 0.00 0.00 4.35
375 379 0.897621 GGTTGGAGGATTTGGGCTTG 59.102 55.000 0.00 0.00 0.00 4.01
376 380 1.549950 GGTTGGAGGATTTGGGCTTGA 60.550 52.381 0.00 0.00 0.00 3.02
377 381 2.247358 GTTGGAGGATTTGGGCTTGAA 58.753 47.619 0.00 0.00 0.00 2.69
378 382 1.923356 TGGAGGATTTGGGCTTGAAC 58.077 50.000 0.00 0.00 0.00 3.18
379 383 1.428912 TGGAGGATTTGGGCTTGAACT 59.571 47.619 0.00 0.00 0.00 3.01
380 384 1.821136 GGAGGATTTGGGCTTGAACTG 59.179 52.381 0.00 0.00 0.00 3.16
381 385 1.821136 GAGGATTTGGGCTTGAACTGG 59.179 52.381 0.00 0.00 0.00 4.00
398 402 2.764010 ACTGGGCCGAAATATTTTTCCC 59.236 45.455 18.81 18.81 38.40 3.97
417 421 4.693420 TCCCAAATCTCTCTCCTTTCTCT 58.307 43.478 0.00 0.00 0.00 3.10
422 426 0.248458 CTCTCTCCTTTCTCTCGCGC 60.248 60.000 0.00 0.00 0.00 6.86
440 444 3.290776 CGAATCTTCGTCCCCATCC 57.709 57.895 4.21 0.00 45.09 3.51
441 445 0.597637 CGAATCTTCGTCCCCATCCG 60.598 60.000 4.21 0.00 45.09 4.18
442 446 0.249911 GAATCTTCGTCCCCATCCGG 60.250 60.000 0.00 0.00 0.00 5.14
443 447 2.325393 AATCTTCGTCCCCATCCGGC 62.325 60.000 0.00 0.00 0.00 6.13
444 448 4.547367 CTTCGTCCCCATCCGGCC 62.547 72.222 0.00 0.00 0.00 6.13
447 451 4.626081 CGTCCCCATCCGGCCATC 62.626 72.222 2.24 0.00 0.00 3.51
448 452 4.271016 GTCCCCATCCGGCCATCC 62.271 72.222 2.24 0.00 0.00 3.51
453 457 3.583380 CATCCGGCCATCCCCCAT 61.583 66.667 2.24 0.00 0.00 4.00
454 458 3.260100 ATCCGGCCATCCCCCATC 61.260 66.667 2.24 0.00 0.00 3.51
615 3296 2.785258 GCGCTTAGTTTCTGCCCG 59.215 61.111 0.00 0.00 0.00 6.13
724 3406 3.021695 TCTTCAAGATCGACGGGTACAT 58.978 45.455 0.00 0.00 0.00 2.29
761 3443 1.305930 GGGTCGGCAAGTTCATCCAC 61.306 60.000 0.00 0.00 0.00 4.02
896 3578 0.757188 CGGAGGTGAGGGTGCTCTAT 60.757 60.000 0.00 0.00 0.00 1.98
925 3607 4.767255 GCTCGACCAGCCCACAGG 62.767 72.222 0.00 0.00 43.17 4.00
1124 3818 1.600916 GTTCAAGGAGGCGCAGGTT 60.601 57.895 10.83 0.00 0.00 3.50
1125 3819 1.150536 TTCAAGGAGGCGCAGGTTT 59.849 52.632 10.83 0.00 0.00 3.27
1126 3820 0.467290 TTCAAGGAGGCGCAGGTTTT 60.467 50.000 10.83 0.00 0.00 2.43
1127 3821 0.889186 TCAAGGAGGCGCAGGTTTTC 60.889 55.000 10.83 0.00 0.00 2.29
1128 3822 1.150536 AAGGAGGCGCAGGTTTTCA 59.849 52.632 10.83 0.00 0.00 2.69
1129 3823 1.172812 AAGGAGGCGCAGGTTTTCAC 61.173 55.000 10.83 0.00 0.00 3.18
1130 3824 1.896660 GGAGGCGCAGGTTTTCACA 60.897 57.895 10.83 0.00 0.00 3.58
1131 3825 1.244019 GGAGGCGCAGGTTTTCACAT 61.244 55.000 10.83 0.00 0.00 3.21
1132 3826 0.598065 GAGGCGCAGGTTTTCACATT 59.402 50.000 10.83 0.00 0.00 2.71
1133 3827 1.000274 GAGGCGCAGGTTTTCACATTT 60.000 47.619 10.83 0.00 0.00 2.32
1173 3867 4.947147 GTGGTCCAAGTGCCGCCA 62.947 66.667 0.00 0.00 0.00 5.69
1176 3870 2.045926 GTCCAAGTGCCGCCATCT 60.046 61.111 0.00 0.00 0.00 2.90
1209 3910 7.129457 TGATAATCTCAGTAACTTGCTGGAT 57.871 36.000 6.99 6.17 34.89 3.41
1210 3911 8.250143 TGATAATCTCAGTAACTTGCTGGATA 57.750 34.615 6.99 0.00 34.89 2.59
1245 3946 7.148188 GGAGCTGATGTATCTTTCAATGTGAAA 60.148 37.037 0.00 3.57 43.37 2.69
1303 4004 2.342648 GTTCGGCGGTCTTCAGGT 59.657 61.111 7.21 0.00 0.00 4.00
1545 4246 0.463654 TGTGCGAGGTTCTTTGTGCT 60.464 50.000 0.00 0.00 0.00 4.40
1554 4255 2.545946 GGTTCTTTGTGCTGAGACTGTC 59.454 50.000 0.00 0.00 0.00 3.51
1676 4383 3.279434 CCAGTAAAGGGTATGAGCAACC 58.721 50.000 0.00 0.00 36.19 3.77
1710 4417 4.225042 TGCCCTACTATCATTGCGGATATT 59.775 41.667 0.00 0.00 0.00 1.28
1725 4432 3.694072 CGGATATTTGGGAGAAAACAGCA 59.306 43.478 0.00 0.00 0.00 4.41
1751 4458 4.315803 AGTCGCAAACTTTAGTATGCTGT 58.684 39.130 0.00 0.00 33.03 4.40
1802 4513 3.898482 AGTTGAAACCTTAGCAACCTGT 58.102 40.909 0.00 0.00 42.02 4.00
1878 4591 6.687653 TCGCAAAATGTTTGTGATATGTTG 57.312 33.333 11.80 0.00 34.42 3.33
1880 4593 6.362016 TCGCAAAATGTTTGTGATATGTTGTC 59.638 34.615 11.80 0.00 34.42 3.18
1881 4594 6.143598 CGCAAAATGTTTGTGATATGTTGTCA 59.856 34.615 8.26 0.00 29.39 3.58
1882 4595 7.306457 CGCAAAATGTTTGTGATATGTTGTCAA 60.306 33.333 8.26 0.00 29.39 3.18
1883 4596 8.005466 GCAAAATGTTTGTGATATGTTGTCAAG 58.995 33.333 2.92 0.00 29.39 3.02
1884 4597 8.489559 CAAAATGTTTGTGATATGTTGTCAAGG 58.510 33.333 0.00 0.00 0.00 3.61
1885 4598 5.703978 TGTTTGTGATATGTTGTCAAGGG 57.296 39.130 0.00 0.00 0.00 3.95
1886 4599 4.022416 TGTTTGTGATATGTTGTCAAGGGC 60.022 41.667 0.00 0.00 0.00 5.19
1887 4600 2.722094 TGTGATATGTTGTCAAGGGCC 58.278 47.619 0.00 0.00 0.00 5.80
1888 4601 2.308570 TGTGATATGTTGTCAAGGGCCT 59.691 45.455 0.00 0.00 0.00 5.19
1889 4602 2.945668 GTGATATGTTGTCAAGGGCCTC 59.054 50.000 6.46 0.00 0.00 4.70
1890 4603 2.575735 TGATATGTTGTCAAGGGCCTCA 59.424 45.455 6.46 0.00 0.00 3.86
1891 4604 2.787473 TATGTTGTCAAGGGCCTCAG 57.213 50.000 6.46 2.41 0.00 3.35
1892 4605 0.773644 ATGTTGTCAAGGGCCTCAGT 59.226 50.000 6.46 0.00 0.00 3.41
1893 4606 0.179020 TGTTGTCAAGGGCCTCAGTG 60.179 55.000 6.46 0.81 0.00 3.66
1894 4607 1.228245 TTGTCAAGGGCCTCAGTGC 60.228 57.895 6.46 0.00 0.00 4.40
1901 4614 2.360475 GGCCTCAGTGCCCAAGAC 60.360 66.667 0.00 0.00 46.11 3.01
1902 4615 2.431683 GCCTCAGTGCCCAAGACA 59.568 61.111 0.00 0.00 0.00 3.41
1903 4616 1.673665 GCCTCAGTGCCCAAGACAG 60.674 63.158 0.00 0.00 0.00 3.51
1904 4617 1.673665 CCTCAGTGCCCAAGACAGC 60.674 63.158 0.00 0.00 0.00 4.40
1905 4618 2.031012 TCAGTGCCCAAGACAGCG 59.969 61.111 0.00 0.00 0.00 5.18
1906 4619 3.052082 CAGTGCCCAAGACAGCGG 61.052 66.667 0.00 0.00 0.00 5.52
1907 4620 4.335647 AGTGCCCAAGACAGCGGG 62.336 66.667 0.00 0.00 46.15 6.13
1912 4625 4.785453 CCAAGACAGCGGGGCCTC 62.785 72.222 0.84 0.00 0.00 4.70
1917 4630 4.753662 ACAGCGGGGCCTCGACTA 62.754 66.667 33.80 0.00 0.00 2.59
1918 4631 4.208686 CAGCGGGGCCTCGACTAC 62.209 72.222 33.80 11.49 0.00 2.73
1921 4634 2.514592 CGGGGCCTCGACTACGTA 60.515 66.667 24.25 0.00 40.69 3.57
1922 4635 2.541120 CGGGGCCTCGACTACGTAG 61.541 68.421 24.25 20.97 40.69 3.51
1924 4637 1.034292 GGGGCCTCGACTACGTAGTT 61.034 60.000 27.96 12.90 37.78 2.24
1925 4638 0.380024 GGGCCTCGACTACGTAGTTC 59.620 60.000 27.96 19.04 37.78 3.01
1926 4639 0.027324 GGCCTCGACTACGTAGTTCG 59.973 60.000 27.96 27.46 37.78 3.95
1937 4650 2.432445 CGTAGTTCGTAGTCTCGGTG 57.568 55.000 0.00 0.00 34.52 4.94
1938 4651 1.061711 CGTAGTTCGTAGTCTCGGTGG 59.938 57.143 0.00 0.00 34.52 4.61
1939 4652 2.350522 GTAGTTCGTAGTCTCGGTGGA 58.649 52.381 0.00 0.00 0.00 4.02
1940 4653 2.125773 AGTTCGTAGTCTCGGTGGAT 57.874 50.000 0.00 0.00 0.00 3.41
1941 4654 3.272574 AGTTCGTAGTCTCGGTGGATA 57.727 47.619 0.00 0.00 0.00 2.59
1942 4655 3.204526 AGTTCGTAGTCTCGGTGGATAG 58.795 50.000 0.00 0.00 0.00 2.08
1943 4656 2.251409 TCGTAGTCTCGGTGGATAGG 57.749 55.000 0.00 0.00 0.00 2.57
1944 4657 1.764723 TCGTAGTCTCGGTGGATAGGA 59.235 52.381 0.00 0.00 0.00 2.94
1945 4658 2.144730 CGTAGTCTCGGTGGATAGGAG 58.855 57.143 0.00 0.00 0.00 3.69
1946 4659 1.881324 GTAGTCTCGGTGGATAGGAGC 59.119 57.143 0.00 0.00 0.00 4.70
1947 4660 0.820074 AGTCTCGGTGGATAGGAGCG 60.820 60.000 0.00 0.00 35.67 5.03
1948 4661 2.194212 TCTCGGTGGATAGGAGCGC 61.194 63.158 0.00 0.00 34.37 5.92
1949 4662 2.123854 TCGGTGGATAGGAGCGCT 60.124 61.111 11.27 11.27 34.37 5.92
1950 4663 0.889638 CTCGGTGGATAGGAGCGCTA 60.890 60.000 11.50 0.00 34.37 4.26
1951 4664 0.889638 TCGGTGGATAGGAGCGCTAG 60.890 60.000 11.50 0.00 34.37 3.42
1952 4665 1.867919 CGGTGGATAGGAGCGCTAGG 61.868 65.000 11.50 0.00 0.00 3.02
1953 4666 1.536943 GGTGGATAGGAGCGCTAGGG 61.537 65.000 11.50 1.65 0.00 3.53
1954 4667 0.828343 GTGGATAGGAGCGCTAGGGT 60.828 60.000 11.50 0.00 0.00 4.34
1955 4668 0.105658 TGGATAGGAGCGCTAGGGTT 60.106 55.000 11.50 1.59 0.00 4.11
1956 4669 1.049402 GGATAGGAGCGCTAGGGTTT 58.951 55.000 11.50 0.00 0.00 3.27
1957 4670 1.416772 GGATAGGAGCGCTAGGGTTTT 59.583 52.381 11.50 0.00 0.00 2.43
1958 4671 2.158798 GGATAGGAGCGCTAGGGTTTTT 60.159 50.000 11.50 0.00 0.00 1.94
1959 4672 2.396590 TAGGAGCGCTAGGGTTTTTG 57.603 50.000 11.50 0.00 0.00 2.44
1960 4673 0.960861 AGGAGCGCTAGGGTTTTTGC 60.961 55.000 11.50 0.00 0.00 3.68
1961 4674 1.506718 GAGCGCTAGGGTTTTTGCC 59.493 57.895 11.50 0.00 0.00 4.52
1962 4675 0.960861 GAGCGCTAGGGTTTTTGCCT 60.961 55.000 11.50 0.00 0.00 4.75
1963 4676 1.212751 GCGCTAGGGTTTTTGCCTG 59.787 57.895 8.77 0.00 0.00 4.85
1964 4677 1.883021 CGCTAGGGTTTTTGCCTGG 59.117 57.895 0.00 0.00 0.00 4.45
1965 4678 1.591703 GCTAGGGTTTTTGCCTGGC 59.408 57.895 12.87 12.87 0.00 4.85
1966 4679 0.900182 GCTAGGGTTTTTGCCTGGCT 60.900 55.000 21.03 0.00 35.64 4.75
1967 4680 0.890683 CTAGGGTTTTTGCCTGGCTG 59.109 55.000 21.03 0.00 0.00 4.85
1968 4681 1.184970 TAGGGTTTTTGCCTGGCTGC 61.185 55.000 21.03 5.23 0.00 5.25
1969 4682 2.510551 GGGTTTTTGCCTGGCTGCT 61.511 57.895 21.03 0.00 0.00 4.24
1970 4683 1.005748 GGTTTTTGCCTGGCTGCTC 60.006 57.895 21.03 6.57 0.00 4.26
1971 4684 1.741525 GTTTTTGCCTGGCTGCTCA 59.258 52.632 21.03 0.00 0.00 4.26
1972 4685 0.104671 GTTTTTGCCTGGCTGCTCAA 59.895 50.000 21.03 1.83 0.00 3.02
1973 4686 1.050204 TTTTTGCCTGGCTGCTCAAT 58.950 45.000 21.03 0.00 0.00 2.57
1974 4687 0.319083 TTTTGCCTGGCTGCTCAATG 59.681 50.000 21.03 0.00 0.00 2.82
1975 4688 1.537814 TTTGCCTGGCTGCTCAATGG 61.538 55.000 21.03 0.00 0.00 3.16
1976 4689 2.362120 GCCTGGCTGCTCAATGGT 60.362 61.111 12.43 0.00 0.00 3.55
1977 4690 2.707849 GCCTGGCTGCTCAATGGTG 61.708 63.158 12.43 0.00 0.00 4.17
1978 4691 2.707849 CCTGGCTGCTCAATGGTGC 61.708 63.158 0.00 0.00 0.00 5.01
1979 4692 3.047718 CTGGCTGCTCAATGGTGCG 62.048 63.158 0.00 0.00 36.33 5.34
1980 4693 3.818787 GGCTGCTCAATGGTGCGG 61.819 66.667 0.00 0.00 41.65 5.69
1981 4694 3.818787 GCTGCTCAATGGTGCGGG 61.819 66.667 5.16 0.00 39.66 6.13
1982 4695 2.046023 CTGCTCAATGGTGCGGGA 60.046 61.111 0.00 0.00 36.49 5.14
1983 4696 2.046023 TGCTCAATGGTGCGGGAG 60.046 61.111 0.00 0.00 36.33 4.30
1984 4697 2.825836 GCTCAATGGTGCGGGAGG 60.826 66.667 0.00 0.00 0.00 4.30
1985 4698 2.989639 CTCAATGGTGCGGGAGGA 59.010 61.111 0.00 0.00 0.00 3.71
1986 4699 1.153289 CTCAATGGTGCGGGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
1987 4700 1.612146 TCAATGGTGCGGGAGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
1988 4701 1.153289 CAATGGTGCGGGAGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
1989 4702 2.370445 AATGGTGCGGGAGGAGAGG 61.370 63.158 0.00 0.00 0.00 3.69
1990 4703 2.822643 AATGGTGCGGGAGGAGAGGA 62.823 60.000 0.00 0.00 0.00 3.71
1991 4704 2.444895 GGTGCGGGAGGAGAGGAT 60.445 66.667 0.00 0.00 0.00 3.24
1992 4705 1.152525 GGTGCGGGAGGAGAGGATA 60.153 63.158 0.00 0.00 0.00 2.59
1993 4706 1.182385 GGTGCGGGAGGAGAGGATAG 61.182 65.000 0.00 0.00 0.00 2.08
1994 4707 1.153989 TGCGGGAGGAGAGGATAGG 59.846 63.158 0.00 0.00 0.00 2.57
1995 4708 1.361176 TGCGGGAGGAGAGGATAGGA 61.361 60.000 0.00 0.00 0.00 2.94
1996 4709 0.610785 GCGGGAGGAGAGGATAGGAG 60.611 65.000 0.00 0.00 0.00 3.69
1997 4710 1.068948 CGGGAGGAGAGGATAGGAGA 58.931 60.000 0.00 0.00 0.00 3.71
1998 4711 1.271707 CGGGAGGAGAGGATAGGAGAC 60.272 61.905 0.00 0.00 0.00 3.36
1999 4712 1.271707 GGGAGGAGAGGATAGGAGACG 60.272 61.905 0.00 0.00 0.00 4.18
2000 4713 1.271707 GGAGGAGAGGATAGGAGACGG 60.272 61.905 0.00 0.00 0.00 4.79
2001 4714 1.700739 GAGGAGAGGATAGGAGACGGA 59.299 57.143 0.00 0.00 0.00 4.69
2002 4715 1.702957 AGGAGAGGATAGGAGACGGAG 59.297 57.143 0.00 0.00 0.00 4.63
2003 4716 1.271707 GGAGAGGATAGGAGACGGAGG 60.272 61.905 0.00 0.00 0.00 4.30
2004 4717 1.700739 GAGAGGATAGGAGACGGAGGA 59.299 57.143 0.00 0.00 0.00 3.71
2005 4718 2.106857 GAGAGGATAGGAGACGGAGGAA 59.893 54.545 0.00 0.00 0.00 3.36
2006 4719 2.107552 AGAGGATAGGAGACGGAGGAAG 59.892 54.545 0.00 0.00 0.00 3.46
2007 4720 2.106857 GAGGATAGGAGACGGAGGAAGA 59.893 54.545 0.00 0.00 0.00 2.87
2008 4721 2.107552 AGGATAGGAGACGGAGGAAGAG 59.892 54.545 0.00 0.00 0.00 2.85
2009 4722 2.510613 GATAGGAGACGGAGGAAGAGG 58.489 57.143 0.00 0.00 0.00 3.69
2010 4723 1.296984 TAGGAGACGGAGGAAGAGGT 58.703 55.000 0.00 0.00 0.00 3.85
2011 4724 1.296984 AGGAGACGGAGGAAGAGGTA 58.703 55.000 0.00 0.00 0.00 3.08
2012 4725 1.213430 AGGAGACGGAGGAAGAGGTAG 59.787 57.143 0.00 0.00 0.00 3.18
2013 4726 1.682740 GAGACGGAGGAAGAGGTAGG 58.317 60.000 0.00 0.00 0.00 3.18
2014 4727 1.212441 GAGACGGAGGAAGAGGTAGGA 59.788 57.143 0.00 0.00 0.00 2.94
2015 4728 1.213430 AGACGGAGGAAGAGGTAGGAG 59.787 57.143 0.00 0.00 0.00 3.69
2016 4729 1.212441 GACGGAGGAAGAGGTAGGAGA 59.788 57.143 0.00 0.00 0.00 3.71
2017 4730 1.854280 ACGGAGGAAGAGGTAGGAGAT 59.146 52.381 0.00 0.00 0.00 2.75
2018 4731 3.054576 ACGGAGGAAGAGGTAGGAGATA 58.945 50.000 0.00 0.00 0.00 1.98
2019 4732 3.462579 ACGGAGGAAGAGGTAGGAGATAA 59.537 47.826 0.00 0.00 0.00 1.75
2020 4733 4.106663 ACGGAGGAAGAGGTAGGAGATAAT 59.893 45.833 0.00 0.00 0.00 1.28
2021 4734 5.312708 ACGGAGGAAGAGGTAGGAGATAATA 59.687 44.000 0.00 0.00 0.00 0.98
2022 4735 6.183361 ACGGAGGAAGAGGTAGGAGATAATAA 60.183 42.308 0.00 0.00 0.00 1.40
2023 4736 6.151480 CGGAGGAAGAGGTAGGAGATAATAAC 59.849 46.154 0.00 0.00 0.00 1.89
2024 4737 7.243091 GGAGGAAGAGGTAGGAGATAATAACT 58.757 42.308 0.00 0.00 0.00 2.24
2025 4738 7.731235 GGAGGAAGAGGTAGGAGATAATAACTT 59.269 40.741 0.00 0.00 0.00 2.66
2026 4739 9.150028 GAGGAAGAGGTAGGAGATAATAACTTT 57.850 37.037 0.00 0.00 0.00 2.66
2036 4749 8.171164 AGGAGATAATAACTTTATTGCTTGCC 57.829 34.615 4.74 0.00 35.20 4.52
2037 4750 7.231519 AGGAGATAATAACTTTATTGCTTGCCC 59.768 37.037 4.74 1.70 35.20 5.36
2038 4751 7.231519 GGAGATAATAACTTTATTGCTTGCCCT 59.768 37.037 4.74 0.00 35.20 5.19
2039 4752 8.171164 AGATAATAACTTTATTGCTTGCCCTC 57.829 34.615 4.74 0.00 35.20 4.30
2040 4753 7.779798 AGATAATAACTTTATTGCTTGCCCTCA 59.220 33.333 4.74 0.00 35.20 3.86
2041 4754 6.603940 AATAACTTTATTGCTTGCCCTCAA 57.396 33.333 0.00 0.00 32.42 3.02
2042 4755 4.953940 AACTTTATTGCTTGCCCTCAAA 57.046 36.364 0.00 0.00 0.00 2.69
2043 4756 4.525912 ACTTTATTGCTTGCCCTCAAAG 57.474 40.909 0.00 0.00 0.00 2.77
2044 4757 3.259123 ACTTTATTGCTTGCCCTCAAAGG 59.741 43.478 0.00 0.00 34.30 3.11
2058 4771 3.809832 CCTCAAAGGGTGCTGATTATACG 59.190 47.826 0.00 0.00 0.00 3.06
2059 4772 4.442893 CCTCAAAGGGTGCTGATTATACGA 60.443 45.833 0.00 0.00 0.00 3.43
2060 4773 5.290493 TCAAAGGGTGCTGATTATACGAT 57.710 39.130 0.00 0.00 0.00 3.73
2061 4774 6.413783 TCAAAGGGTGCTGATTATACGATA 57.586 37.500 0.00 0.00 0.00 2.92
2062 4775 7.004555 TCAAAGGGTGCTGATTATACGATAT 57.995 36.000 0.00 0.00 0.00 1.63
2063 4776 8.129496 TCAAAGGGTGCTGATTATACGATATA 57.871 34.615 0.00 0.00 0.00 0.86
2064 4777 8.758829 TCAAAGGGTGCTGATTATACGATATAT 58.241 33.333 0.00 0.00 0.00 0.86
2069 4782 9.477484 GGGTGCTGATTATACGATATATAAAGG 57.523 37.037 0.00 0.00 0.00 3.11
2070 4783 8.979574 GGTGCTGATTATACGATATATAAAGGC 58.020 37.037 0.00 0.00 0.00 4.35
2071 4784 8.979574 GTGCTGATTATACGATATATAAAGGCC 58.020 37.037 0.00 0.00 0.00 5.19
2072 4785 8.148351 TGCTGATTATACGATATATAAAGGCCC 58.852 37.037 0.00 0.00 0.00 5.80
2073 4786 7.603024 GCTGATTATACGATATATAAAGGCCCC 59.397 40.741 0.00 0.00 0.00 5.80
2074 4787 8.555896 TGATTATACGATATATAAAGGCCCCA 57.444 34.615 0.00 0.00 0.00 4.96
2075 4788 9.166222 TGATTATACGATATATAAAGGCCCCAT 57.834 33.333 0.00 0.00 0.00 4.00
2076 4789 9.436957 GATTATACGATATATAAAGGCCCCATG 57.563 37.037 0.00 0.00 0.00 3.66
2077 4790 4.503714 ACGATATATAAAGGCCCCATGG 57.496 45.455 4.14 4.14 0.00 3.66
2087 4800 2.682846 CCCCATGGGCTGCTAACA 59.317 61.111 26.87 0.00 35.35 2.41
2088 4801 1.000233 CCCCATGGGCTGCTAACAA 60.000 57.895 26.87 0.00 35.35 2.83
2089 4802 0.614415 CCCCATGGGCTGCTAACAAA 60.614 55.000 26.87 0.00 35.35 2.83
2090 4803 0.532115 CCCATGGGCTGCTAACAAAC 59.468 55.000 20.41 0.00 0.00 2.93
2091 4804 1.549203 CCATGGGCTGCTAACAAACT 58.451 50.000 2.85 0.00 0.00 2.66
2092 4805 2.620367 CCCATGGGCTGCTAACAAACTA 60.620 50.000 20.41 0.00 0.00 2.24
2093 4806 2.684881 CCATGGGCTGCTAACAAACTAG 59.315 50.000 2.85 0.00 0.00 2.57
2094 4807 3.609853 CATGGGCTGCTAACAAACTAGA 58.390 45.455 0.00 0.00 0.00 2.43
2095 4808 3.780804 TGGGCTGCTAACAAACTAGAA 57.219 42.857 0.00 0.00 0.00 2.10
2096 4809 4.093472 TGGGCTGCTAACAAACTAGAAA 57.907 40.909 0.00 0.00 0.00 2.52
2097 4810 3.818773 TGGGCTGCTAACAAACTAGAAAC 59.181 43.478 0.00 0.00 0.00 2.78
2098 4811 3.190744 GGGCTGCTAACAAACTAGAAACC 59.809 47.826 0.00 0.00 0.00 3.27
2099 4812 4.072839 GGCTGCTAACAAACTAGAAACCT 58.927 43.478 0.00 0.00 0.00 3.50
2100 4813 5.243207 GGCTGCTAACAAACTAGAAACCTA 58.757 41.667 0.00 0.00 0.00 3.08
2101 4814 5.880887 GGCTGCTAACAAACTAGAAACCTAT 59.119 40.000 0.00 0.00 0.00 2.57
2102 4815 7.046033 GGCTGCTAACAAACTAGAAACCTATA 58.954 38.462 0.00 0.00 0.00 1.31
2103 4816 7.011202 GGCTGCTAACAAACTAGAAACCTATAC 59.989 40.741 0.00 0.00 0.00 1.47
2104 4817 7.254017 GCTGCTAACAAACTAGAAACCTATACG 60.254 40.741 0.00 0.00 0.00 3.06
2105 4818 7.605449 TGCTAACAAACTAGAAACCTATACGT 58.395 34.615 0.00 0.00 0.00 3.57
2106 4819 8.739039 TGCTAACAAACTAGAAACCTATACGTA 58.261 33.333 0.00 0.00 0.00 3.57
2107 4820 9.573133 GCTAACAAACTAGAAACCTATACGTAA 57.427 33.333 0.00 0.00 0.00 3.18
2110 4823 9.762933 AACAAACTAGAAACCTATACGTAACAA 57.237 29.630 0.00 0.00 0.00 2.83
2111 4824 9.762933 ACAAACTAGAAACCTATACGTAACAAA 57.237 29.630 0.00 0.00 0.00 2.83
2113 4826 9.987272 AAACTAGAAACCTATACGTAACAAACT 57.013 29.630 0.00 0.00 0.00 2.66
2118 4831 9.018582 AGAAACCTATACGTAACAAACTAGTCT 57.981 33.333 0.00 0.00 0.00 3.24
2119 4832 9.631452 GAAACCTATACGTAACAAACTAGTCTT 57.369 33.333 0.00 0.00 0.00 3.01
2120 4833 9.987272 AAACCTATACGTAACAAACTAGTCTTT 57.013 29.630 0.00 0.00 0.00 2.52
2121 4834 9.987272 AACCTATACGTAACAAACTAGTCTTTT 57.013 29.630 0.00 0.00 0.00 2.27
2147 4860 7.598759 TTCTAGGAACTAATGTATCAGGACC 57.401 40.000 0.00 0.00 42.17 4.46
2148 4861 6.679542 TCTAGGAACTAATGTATCAGGACCA 58.320 40.000 0.00 0.00 42.17 4.02
2149 4862 5.878406 AGGAACTAATGTATCAGGACCAG 57.122 43.478 0.00 0.00 36.02 4.00
2150 4863 4.656112 AGGAACTAATGTATCAGGACCAGG 59.344 45.833 0.00 0.00 36.02 4.45
2151 4864 4.654262 GGAACTAATGTATCAGGACCAGGA 59.346 45.833 0.00 0.00 0.00 3.86
2152 4865 5.453480 GGAACTAATGTATCAGGACCAGGAC 60.453 48.000 0.00 0.00 0.00 3.85
2153 4866 4.884961 ACTAATGTATCAGGACCAGGACT 58.115 43.478 0.00 0.00 0.00 3.85
2154 4867 4.896482 ACTAATGTATCAGGACCAGGACTC 59.104 45.833 0.00 0.00 0.00 3.36
2155 4868 2.160721 TGTATCAGGACCAGGACTCC 57.839 55.000 0.00 0.00 0.00 3.85
2156 4869 1.646447 TGTATCAGGACCAGGACTCCT 59.354 52.381 0.00 0.00 38.84 3.69
2164 4877 4.106925 CAGGACTCCTGCCCAGCC 62.107 72.222 12.34 0.00 45.13 4.85
2165 4878 4.345286 AGGACTCCTGCCCAGCCT 62.345 66.667 0.00 0.00 29.57 4.58
2166 4879 2.365635 GGACTCCTGCCCAGCCTA 60.366 66.667 0.00 0.00 0.00 3.93
2167 4880 2.736826 GGACTCCTGCCCAGCCTAC 61.737 68.421 0.00 0.00 0.00 3.18
2168 4881 3.077556 ACTCCTGCCCAGCCTACG 61.078 66.667 0.00 0.00 0.00 3.51
2169 4882 4.537433 CTCCTGCCCAGCCTACGC 62.537 72.222 0.00 0.00 0.00 4.42
2172 4885 4.537433 CTGCCCAGCCTACGCCTC 62.537 72.222 0.00 0.00 34.57 4.70
2177 4890 4.880537 CAGCCTACGCCTCGCCTG 62.881 72.222 0.00 0.00 34.57 4.85
2179 4892 3.917760 GCCTACGCCTCGCCTGAT 61.918 66.667 0.00 0.00 0.00 2.90
2180 4893 2.028190 CCTACGCCTCGCCTGATG 59.972 66.667 0.00 0.00 0.00 3.07
2181 4894 2.659897 CTACGCCTCGCCTGATGC 60.660 66.667 0.00 0.00 32.98 3.91
2228 4941 4.814294 GCCCACGCCTGTAGGACG 62.814 72.222 1.17 7.56 39.44 4.79
2229 4942 3.379445 CCCACGCCTGTAGGACGT 61.379 66.667 12.42 12.42 44.39 4.34
2232 4945 4.065281 ACGCCTGTAGGACGTGCC 62.065 66.667 15.88 0.00 42.88 5.01
2233 4946 4.814294 CGCCTGTAGGACGTGCCC 62.814 72.222 2.38 0.00 37.37 5.36
2234 4947 4.468689 GCCTGTAGGACGTGCCCC 62.469 72.222 2.38 0.00 37.37 5.80
2235 4948 3.000819 CCTGTAGGACGTGCCCCA 61.001 66.667 2.38 0.00 37.37 4.96
2236 4949 2.264794 CTGTAGGACGTGCCCCAC 59.735 66.667 2.38 0.00 37.37 4.61
2237 4950 2.524640 TGTAGGACGTGCCCCACA 60.525 61.111 2.38 2.87 37.37 4.17
2238 4951 1.899437 CTGTAGGACGTGCCCCACAT 61.899 60.000 2.38 0.00 37.37 3.21
2239 4952 1.449601 GTAGGACGTGCCCCACATG 60.450 63.158 2.38 0.00 41.41 3.21
2240 4953 1.610967 TAGGACGTGCCCCACATGA 60.611 57.895 2.38 0.00 38.75 3.07
2241 4954 1.895020 TAGGACGTGCCCCACATGAC 61.895 60.000 2.38 0.00 38.75 3.06
2242 4955 2.031919 GACGTGCCCCACATGACA 59.968 61.111 0.00 0.00 38.75 3.58
2243 4956 1.377202 GACGTGCCCCACATGACAT 60.377 57.895 0.00 0.00 38.75 3.06
2244 4957 0.107897 GACGTGCCCCACATGACATA 60.108 55.000 0.00 0.00 38.75 2.29
2245 4958 0.546122 ACGTGCCCCACATGACATAT 59.454 50.000 0.00 0.00 38.75 1.78
2246 4959 0.946528 CGTGCCCCACATGACATATG 59.053 55.000 0.00 0.00 37.49 1.78
2247 4960 1.746861 CGTGCCCCACATGACATATGT 60.747 52.381 8.43 8.43 37.49 2.29
2248 4961 2.378038 GTGCCCCACATGACATATGTT 58.622 47.619 10.30 0.00 34.08 2.71
2249 4962 2.358898 GTGCCCCACATGACATATGTTC 59.641 50.000 10.30 4.23 34.08 3.18
2250 4963 2.241941 TGCCCCACATGACATATGTTCT 59.758 45.455 10.30 0.00 0.00 3.01
2251 4964 2.620115 GCCCCACATGACATATGTTCTG 59.380 50.000 10.30 12.56 0.00 3.02
2252 4965 2.620115 CCCCACATGACATATGTTCTGC 59.380 50.000 10.30 0.00 0.00 4.26
2275 4988 7.105588 TGCCTGTTATATGAACCTATGCTATG 58.894 38.462 0.00 0.00 0.00 2.23
2321 5042 2.095212 TGCTCTGTTGACTAGCAGTACG 60.095 50.000 7.38 0.00 41.15 3.67
2365 5090 8.125978 TCTTTTATGTGCTCATTTCATTTCCT 57.874 30.769 6.57 0.00 35.70 3.36
2436 5161 8.400947 TGAGATAAAACTTCAGCAAATATCAGC 58.599 33.333 0.00 0.00 0.00 4.26
2582 5308 2.604614 GCATCGTTGTTCCAACCTGAAC 60.605 50.000 1.80 0.00 43.90 3.18
2644 5372 2.224769 TGGAGGCTGGTAAAACCTTGAG 60.225 50.000 0.00 0.00 39.58 3.02
2649 5377 3.826729 GGCTGGTAAAACCTTGAGACATT 59.173 43.478 0.00 0.00 39.58 2.71
2651 5379 5.475564 GGCTGGTAAAACCTTGAGACATTTA 59.524 40.000 0.00 0.00 39.58 1.40
2661 5389 8.934023 AACCTTGAGACATTTATTTCCACTTA 57.066 30.769 0.00 0.00 0.00 2.24
2662 5390 8.567285 ACCTTGAGACATTTATTTCCACTTAG 57.433 34.615 0.00 0.00 0.00 2.18
2663 5391 7.121315 ACCTTGAGACATTTATTTCCACTTAGC 59.879 37.037 0.00 0.00 0.00 3.09
2672 5411 9.352784 CATTTATTTCCACTTAGCGATTTTTGA 57.647 29.630 0.00 0.00 0.00 2.69
2692 5438 4.318332 TGAACAAAACATGTGCAAAACCA 58.682 34.783 0.00 0.00 44.96 3.67
2740 5486 1.972795 TGCCGTTCCTTACCAAGTACT 59.027 47.619 0.00 0.00 0.00 2.73
2741 5487 3.164268 TGCCGTTCCTTACCAAGTACTA 58.836 45.455 0.00 0.00 0.00 1.82
2742 5488 3.056607 TGCCGTTCCTTACCAAGTACTAC 60.057 47.826 0.00 0.00 0.00 2.73
2743 5489 3.056607 GCCGTTCCTTACCAAGTACTACA 60.057 47.826 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.199289 CCCCAACTACCCAAGGTAAGTAG 59.801 52.174 0.00 0.00 37.76 2.57
29 30 0.699981 GCCCCAACTACCCAAGGTAA 59.300 55.000 0.00 0.00 37.76 2.85
61 62 2.166254 CTGCAAAAATAGCAATCCGGGT 59.834 45.455 0.00 0.00 42.17 5.28
66 67 7.756722 ACATGTAAGACTGCAAAAATAGCAATC 59.243 33.333 0.00 0.00 42.17 2.67
136 140 4.345257 ACAGTGCAAGATATACCCCTACAG 59.655 45.833 0.00 0.00 0.00 2.74
169 173 3.099141 CAAGGCATACCAATGGAAACCT 58.901 45.455 6.16 4.11 39.06 3.50
171 175 3.258123 ACACAAGGCATACCAATGGAAAC 59.742 43.478 6.16 0.00 39.06 2.78
174 178 2.308570 AGACACAAGGCATACCAATGGA 59.691 45.455 6.16 0.00 39.06 3.41
179 183 4.359434 TTGTTAGACACAAGGCATACCA 57.641 40.909 0.00 0.00 40.71 3.25
180 184 5.414454 TGATTTGTTAGACACAAGGCATACC 59.586 40.000 0.00 0.00 46.37 2.73
185 189 5.886960 AGATGATTTGTTAGACACAAGGC 57.113 39.130 0.00 0.00 46.37 4.35
310 314 5.851703 GGCTTTTTGAGTTGTCGTTTCTATC 59.148 40.000 0.00 0.00 0.00 2.08
311 315 5.278315 GGGCTTTTTGAGTTGTCGTTTCTAT 60.278 40.000 0.00 0.00 0.00 1.98
314 318 3.113322 GGGCTTTTTGAGTTGTCGTTTC 58.887 45.455 0.00 0.00 0.00 2.78
316 320 2.096248 TGGGCTTTTTGAGTTGTCGTT 58.904 42.857 0.00 0.00 0.00 3.85
317 321 1.757682 TGGGCTTTTTGAGTTGTCGT 58.242 45.000 0.00 0.00 0.00 4.34
319 323 3.069443 TCCATTGGGCTTTTTGAGTTGTC 59.931 43.478 2.09 0.00 0.00 3.18
322 326 2.368548 GGTCCATTGGGCTTTTTGAGTT 59.631 45.455 7.34 0.00 0.00 3.01
324 328 1.969923 TGGTCCATTGGGCTTTTTGAG 59.030 47.619 7.34 0.00 0.00 3.02
326 330 2.158842 TGTTGGTCCATTGGGCTTTTTG 60.159 45.455 7.34 0.00 0.00 2.44
332 336 2.961768 CGTGTTGGTCCATTGGGC 59.038 61.111 2.09 0.00 0.00 5.36
333 337 1.900981 TGCGTGTTGGTCCATTGGG 60.901 57.895 2.09 0.00 0.00 4.12
335 339 0.317770 GTGTGCGTGTTGGTCCATTG 60.318 55.000 0.00 0.00 0.00 2.82
336 340 1.452145 GGTGTGCGTGTTGGTCCATT 61.452 55.000 0.00 0.00 0.00 3.16
337 341 1.896660 GGTGTGCGTGTTGGTCCAT 60.897 57.895 0.00 0.00 0.00 3.41
338 342 2.515057 GGTGTGCGTGTTGGTCCA 60.515 61.111 0.00 0.00 0.00 4.02
339 343 3.645975 CGGTGTGCGTGTTGGTCC 61.646 66.667 0.00 0.00 0.00 4.46
342 346 3.206246 AACCGGTGTGCGTGTTGG 61.206 61.111 8.52 0.00 0.00 3.77
343 347 2.024022 CAACCGGTGTGCGTGTTG 59.976 61.111 8.52 0.00 32.99 3.33
344 348 3.206246 CCAACCGGTGTGCGTGTT 61.206 61.111 8.52 0.00 0.00 3.32
345 349 4.164087 TCCAACCGGTGTGCGTGT 62.164 61.111 8.52 0.00 0.00 4.49
346 350 3.345808 CTCCAACCGGTGTGCGTG 61.346 66.667 8.52 0.93 0.00 5.34
347 351 4.619227 CCTCCAACCGGTGTGCGT 62.619 66.667 8.52 0.00 0.00 5.24
348 352 3.605749 ATCCTCCAACCGGTGTGCG 62.606 63.158 8.52 0.00 0.00 5.34
349 353 0.893727 AAATCCTCCAACCGGTGTGC 60.894 55.000 8.52 0.00 0.00 4.57
350 354 0.881118 CAAATCCTCCAACCGGTGTG 59.119 55.000 8.52 8.91 0.00 3.82
351 355 0.251165 CCAAATCCTCCAACCGGTGT 60.251 55.000 8.52 0.00 0.00 4.16
352 356 0.965363 CCCAAATCCTCCAACCGGTG 60.965 60.000 8.52 1.82 0.00 4.94
353 357 1.382629 CCCAAATCCTCCAACCGGT 59.617 57.895 0.00 0.00 0.00 5.28
354 358 2.052104 GCCCAAATCCTCCAACCGG 61.052 63.158 0.00 0.00 0.00 5.28
355 359 0.611896 AAGCCCAAATCCTCCAACCG 60.612 55.000 0.00 0.00 0.00 4.44
356 360 0.897621 CAAGCCCAAATCCTCCAACC 59.102 55.000 0.00 0.00 0.00 3.77
357 361 1.923356 TCAAGCCCAAATCCTCCAAC 58.077 50.000 0.00 0.00 0.00 3.77
358 362 2.158325 AGTTCAAGCCCAAATCCTCCAA 60.158 45.455 0.00 0.00 0.00 3.53
359 363 1.428912 AGTTCAAGCCCAAATCCTCCA 59.571 47.619 0.00 0.00 0.00 3.86
360 364 1.821136 CAGTTCAAGCCCAAATCCTCC 59.179 52.381 0.00 0.00 0.00 4.30
361 365 1.821136 CCAGTTCAAGCCCAAATCCTC 59.179 52.381 0.00 0.00 0.00 3.71
362 366 1.550869 CCCAGTTCAAGCCCAAATCCT 60.551 52.381 0.00 0.00 0.00 3.24
363 367 0.897621 CCCAGTTCAAGCCCAAATCC 59.102 55.000 0.00 0.00 0.00 3.01
364 368 0.247460 GCCCAGTTCAAGCCCAAATC 59.753 55.000 0.00 0.00 0.00 2.17
365 369 1.194121 GGCCCAGTTCAAGCCCAAAT 61.194 55.000 0.00 0.00 41.00 2.32
366 370 1.836604 GGCCCAGTTCAAGCCCAAA 60.837 57.895 0.00 0.00 41.00 3.28
367 371 2.203625 GGCCCAGTTCAAGCCCAA 60.204 61.111 0.00 0.00 41.00 4.12
368 372 4.659172 CGGCCCAGTTCAAGCCCA 62.659 66.667 0.00 0.00 44.13 5.36
369 373 3.860930 TTCGGCCCAGTTCAAGCCC 62.861 63.158 0.00 0.00 44.13 5.19
370 374 1.250840 ATTTCGGCCCAGTTCAAGCC 61.251 55.000 0.00 0.00 43.53 4.35
371 375 1.459450 TATTTCGGCCCAGTTCAAGC 58.541 50.000 0.00 0.00 0.00 4.01
372 376 4.718940 AAATATTTCGGCCCAGTTCAAG 57.281 40.909 0.00 0.00 0.00 3.02
373 377 5.474825 GAAAAATATTTCGGCCCAGTTCAA 58.525 37.500 0.10 0.00 35.94 2.69
374 378 4.081917 GGAAAAATATTTCGGCCCAGTTCA 60.082 41.667 0.10 0.00 44.83 3.18
375 379 4.430007 GGAAAAATATTTCGGCCCAGTTC 58.570 43.478 0.10 0.00 44.83 3.01
376 380 3.196901 GGGAAAAATATTTCGGCCCAGTT 59.803 43.478 20.03 3.54 44.83 3.16
377 381 2.764010 GGGAAAAATATTTCGGCCCAGT 59.236 45.455 20.03 0.00 44.83 4.00
378 382 2.763448 TGGGAAAAATATTTCGGCCCAG 59.237 45.455 22.20 0.00 44.83 4.45
379 383 2.821437 TGGGAAAAATATTTCGGCCCA 58.179 42.857 22.20 22.20 44.83 5.36
380 384 3.897141 TTGGGAAAAATATTTCGGCCC 57.103 42.857 18.91 18.91 44.83 5.80
381 385 5.670485 AGATTTGGGAAAAATATTTCGGCC 58.330 37.500 0.10 0.00 44.83 6.13
398 402 4.111916 GCGAGAGAAAGGAGAGAGATTTG 58.888 47.826 0.00 0.00 0.00 2.32
436 440 3.574074 GATGGGGGATGGCCGGATG 62.574 68.421 5.05 0.00 33.83 3.51
437 441 3.260100 GATGGGGGATGGCCGGAT 61.260 66.667 5.05 0.00 33.83 4.18
455 459 2.118679 GATGGGGAATTTTTCTGGGGG 58.881 52.381 0.00 0.00 0.00 5.40
456 460 3.033909 GAGATGGGGAATTTTTCTGGGG 58.966 50.000 0.00 0.00 0.00 4.96
457 461 2.689983 CGAGATGGGGAATTTTTCTGGG 59.310 50.000 0.00 0.00 0.00 4.45
458 462 2.099756 GCGAGATGGGGAATTTTTCTGG 59.900 50.000 0.00 0.00 0.00 3.86
459 463 2.099756 GGCGAGATGGGGAATTTTTCTG 59.900 50.000 0.00 0.00 0.00 3.02
615 3296 1.225704 CCATTCCTGGCCTCTGGTC 59.774 63.158 3.32 0.00 35.23 4.02
628 3310 4.508128 TCTCGGACGCGGCCATTC 62.508 66.667 33.95 8.71 0.00 2.67
629 3311 4.514577 CTCTCGGACGCGGCCATT 62.515 66.667 33.95 0.00 0.00 3.16
761 3443 3.753070 GACGGCGAAGGTAGCGGAG 62.753 68.421 16.62 0.00 38.16 4.63
896 3578 0.104855 GGTCGAGCAGCCACATATCA 59.895 55.000 10.30 0.00 0.00 2.15
932 3620 2.045340 GCATAAGGCGGTGGTGGT 60.045 61.111 0.00 0.00 0.00 4.16
935 3623 2.272146 CAGGCATAAGGCGGTGGT 59.728 61.111 0.00 0.00 46.16 4.16
1027 3721 4.550076 AGTTCACTCTTCCTCCAGAATG 57.450 45.455 0.00 0.00 32.82 2.67
1100 3794 1.277842 TGCGCCTCCTTGAACTTGATA 59.722 47.619 4.18 0.00 0.00 2.15
1124 3818 1.146774 TGGCCTCCTCCAAATGTGAAA 59.853 47.619 3.32 0.00 32.18 2.69
1125 3819 0.776810 TGGCCTCCTCCAAATGTGAA 59.223 50.000 3.32 0.00 32.18 3.18
1126 3820 0.776810 TTGGCCTCCTCCAAATGTGA 59.223 50.000 3.32 0.00 42.69 3.58
1127 3821 1.180029 CTTGGCCTCCTCCAAATGTG 58.820 55.000 3.32 0.00 44.73 3.21
1128 3822 1.075601 TCTTGGCCTCCTCCAAATGT 58.924 50.000 3.32 0.00 44.73 2.71
1129 3823 1.467920 GTCTTGGCCTCCTCCAAATG 58.532 55.000 3.32 0.00 44.73 2.32
1130 3824 0.035056 CGTCTTGGCCTCCTCCAAAT 60.035 55.000 3.32 0.00 44.73 2.32
1131 3825 1.125093 TCGTCTTGGCCTCCTCCAAA 61.125 55.000 3.32 0.00 44.73 3.28
1132 3826 1.125093 TTCGTCTTGGCCTCCTCCAA 61.125 55.000 3.32 0.00 43.36 3.53
1133 3827 0.909610 ATTCGTCTTGGCCTCCTCCA 60.910 55.000 3.32 0.00 0.00 3.86
1209 3910 1.273267 ACATCAGCTCCCTCTGTGGTA 60.273 52.381 0.00 0.00 35.63 3.25
1210 3911 0.546267 ACATCAGCTCCCTCTGTGGT 60.546 55.000 0.00 0.00 35.63 4.16
1245 3946 7.108194 TCTTATGAGCTGAGAAAACATCATGT 58.892 34.615 0.00 0.00 0.00 3.21
1251 3952 8.489489 AGGATTATCTTATGAGCTGAGAAAACA 58.511 33.333 0.00 0.00 0.00 2.83
1303 4004 1.207089 CATTGGCCCGTAGAACTCTGA 59.793 52.381 0.00 0.00 0.00 3.27
1545 4246 2.643272 GTGGTCGCGACAGTCTCA 59.357 61.111 37.26 23.85 0.00 3.27
1635 4339 3.195182 TGGCCACCACATCACAAATTATG 59.805 43.478 0.00 0.00 0.00 1.90
1642 4346 0.767998 TTACTGGCCACCACATCACA 59.232 50.000 0.00 0.00 0.00 3.58
1710 4417 3.631250 ACTCTTTGCTGTTTTCTCCCAA 58.369 40.909 0.00 0.00 0.00 4.12
1725 4432 5.928153 GCATACTAAAGTTTGCGACTCTTT 58.072 37.500 9.30 7.98 41.58 2.52
1751 4458 3.034721 ACGCTCAAGTTAATCCACGAA 57.965 42.857 0.00 0.00 0.00 3.85
1885 4598 1.673665 CTGTCTTGGGCACTGAGGC 60.674 63.158 0.00 0.00 43.27 4.70
1886 4599 1.673665 GCTGTCTTGGGCACTGAGG 60.674 63.158 0.00 0.00 0.00 3.86
1887 4600 2.031516 CGCTGTCTTGGGCACTGAG 61.032 63.158 0.00 0.00 0.00 3.35
1888 4601 2.031012 CGCTGTCTTGGGCACTGA 59.969 61.111 0.00 0.00 0.00 3.41
1889 4602 3.052082 CCGCTGTCTTGGGCACTG 61.052 66.667 0.00 0.00 0.00 3.66
1890 4603 4.335647 CCCGCTGTCTTGGGCACT 62.336 66.667 0.00 0.00 38.90 4.40
1895 4608 4.785453 GAGGCCCCGCTGTCTTGG 62.785 72.222 0.00 0.00 0.00 3.61
1900 4613 4.753662 TAGTCGAGGCCCCGCTGT 62.754 66.667 0.00 0.00 0.00 4.40
1901 4614 4.208686 GTAGTCGAGGCCCCGCTG 62.209 72.222 0.00 0.00 0.00 5.18
1904 4617 2.514592 TACGTAGTCGAGGCCCCG 60.515 66.667 0.00 0.00 43.93 5.73
1905 4618 1.034292 AACTACGTAGTCGAGGCCCC 61.034 60.000 27.51 0.00 43.93 5.80
1906 4619 0.380024 GAACTACGTAGTCGAGGCCC 59.620 60.000 27.51 8.27 43.93 5.80
1907 4620 0.027324 CGAACTACGTAGTCGAGGCC 59.973 60.000 27.51 11.92 43.93 5.19
1908 4621 3.505782 CGAACTACGTAGTCGAGGC 57.494 57.895 27.51 13.70 43.93 4.70
1919 4632 2.350522 TCCACCGAGACTACGAACTAC 58.649 52.381 0.00 0.00 35.09 2.73
1920 4633 2.768253 TCCACCGAGACTACGAACTA 57.232 50.000 0.00 0.00 35.09 2.24
1921 4634 2.125773 ATCCACCGAGACTACGAACT 57.874 50.000 0.00 0.00 35.09 3.01
1922 4635 2.290093 CCTATCCACCGAGACTACGAAC 59.710 54.545 0.00 0.00 35.09 3.95
1923 4636 2.171237 TCCTATCCACCGAGACTACGAA 59.829 50.000 0.00 0.00 35.09 3.85
1924 4637 1.764723 TCCTATCCACCGAGACTACGA 59.235 52.381 0.00 0.00 35.09 3.43
1925 4638 2.144730 CTCCTATCCACCGAGACTACG 58.855 57.143 0.00 0.00 0.00 3.51
1926 4639 1.881324 GCTCCTATCCACCGAGACTAC 59.119 57.143 0.00 0.00 0.00 2.73
1927 4640 1.542767 CGCTCCTATCCACCGAGACTA 60.543 57.143 0.00 0.00 0.00 2.59
1928 4641 0.820074 CGCTCCTATCCACCGAGACT 60.820 60.000 0.00 0.00 0.00 3.24
1929 4642 1.655329 CGCTCCTATCCACCGAGAC 59.345 63.158 0.00 0.00 0.00 3.36
1930 4643 2.194212 GCGCTCCTATCCACCGAGA 61.194 63.158 0.00 0.00 0.00 4.04
1931 4644 0.889638 TAGCGCTCCTATCCACCGAG 60.890 60.000 16.34 0.00 0.00 4.63
1932 4645 0.889638 CTAGCGCTCCTATCCACCGA 60.890 60.000 16.34 0.00 0.00 4.69
1933 4646 1.581954 CTAGCGCTCCTATCCACCG 59.418 63.158 16.34 0.00 0.00 4.94
1934 4647 1.536943 CCCTAGCGCTCCTATCCACC 61.537 65.000 16.34 0.00 0.00 4.61
1935 4648 0.828343 ACCCTAGCGCTCCTATCCAC 60.828 60.000 16.34 0.00 0.00 4.02
1936 4649 0.105658 AACCCTAGCGCTCCTATCCA 60.106 55.000 16.34 0.00 0.00 3.41
1937 4650 1.049402 AAACCCTAGCGCTCCTATCC 58.951 55.000 16.34 0.00 0.00 2.59
1938 4651 2.872858 CAAAAACCCTAGCGCTCCTATC 59.127 50.000 16.34 0.00 0.00 2.08
1939 4652 2.919228 CAAAAACCCTAGCGCTCCTAT 58.081 47.619 16.34 0.00 0.00 2.57
1940 4653 1.677820 GCAAAAACCCTAGCGCTCCTA 60.678 52.381 16.34 0.00 0.00 2.94
1941 4654 0.960861 GCAAAAACCCTAGCGCTCCT 60.961 55.000 16.34 0.00 0.00 3.69
1942 4655 1.506718 GCAAAAACCCTAGCGCTCC 59.493 57.895 16.34 0.00 0.00 4.70
1943 4656 0.960861 AGGCAAAAACCCTAGCGCTC 60.961 55.000 16.34 0.00 0.00 5.03
1944 4657 1.074951 AGGCAAAAACCCTAGCGCT 59.925 52.632 17.26 17.26 0.00 5.92
1945 4658 1.212751 CAGGCAAAAACCCTAGCGC 59.787 57.895 0.00 0.00 0.00 5.92
1946 4659 1.883021 CCAGGCAAAAACCCTAGCG 59.117 57.895 0.00 0.00 0.00 4.26
1947 4660 0.900182 AGCCAGGCAAAAACCCTAGC 60.900 55.000 15.80 0.00 37.37 3.42
1948 4661 0.890683 CAGCCAGGCAAAAACCCTAG 59.109 55.000 15.80 0.00 0.00 3.02
1949 4662 1.184970 GCAGCCAGGCAAAAACCCTA 61.185 55.000 15.80 0.00 0.00 3.53
1950 4663 2.510551 GCAGCCAGGCAAAAACCCT 61.511 57.895 15.80 0.00 0.00 4.34
1951 4664 2.031012 GCAGCCAGGCAAAAACCC 59.969 61.111 15.80 0.00 0.00 4.11
1952 4665 1.005748 GAGCAGCCAGGCAAAAACC 60.006 57.895 15.80 0.00 35.83 3.27
1953 4666 0.104671 TTGAGCAGCCAGGCAAAAAC 59.895 50.000 15.80 1.39 35.83 2.43
1954 4667 1.050204 ATTGAGCAGCCAGGCAAAAA 58.950 45.000 15.80 0.63 35.83 1.94
1955 4668 0.319083 CATTGAGCAGCCAGGCAAAA 59.681 50.000 15.80 0.23 35.83 2.44
1956 4669 1.537814 CCATTGAGCAGCCAGGCAAA 61.538 55.000 15.80 0.00 35.83 3.68
1957 4670 1.980232 CCATTGAGCAGCCAGGCAA 60.980 57.895 15.80 0.00 35.83 4.52
1958 4671 2.361992 CCATTGAGCAGCCAGGCA 60.362 61.111 15.80 0.00 35.83 4.75
1959 4672 2.362120 ACCATTGAGCAGCCAGGC 60.362 61.111 1.84 1.84 0.00 4.85
1960 4673 2.707849 GCACCATTGAGCAGCCAGG 61.708 63.158 0.00 0.00 0.00 4.45
1961 4674 2.882876 GCACCATTGAGCAGCCAG 59.117 61.111 0.00 0.00 0.00 4.85
1962 4675 3.057548 CGCACCATTGAGCAGCCA 61.058 61.111 0.00 0.00 0.00 4.75
1963 4676 3.818787 CCGCACCATTGAGCAGCC 61.819 66.667 0.00 0.00 0.00 4.85
1964 4677 3.818787 CCCGCACCATTGAGCAGC 61.819 66.667 0.00 0.00 0.00 5.25
1965 4678 2.046023 TCCCGCACCATTGAGCAG 60.046 61.111 0.00 0.00 0.00 4.24
1966 4679 2.046023 CTCCCGCACCATTGAGCA 60.046 61.111 0.00 0.00 0.00 4.26
1967 4680 2.825836 CCTCCCGCACCATTGAGC 60.826 66.667 0.00 0.00 0.00 4.26
1968 4681 1.153289 CTCCTCCCGCACCATTGAG 60.153 63.158 0.00 0.00 0.00 3.02
1969 4682 1.612146 TCTCCTCCCGCACCATTGA 60.612 57.895 0.00 0.00 0.00 2.57
1970 4683 1.153289 CTCTCCTCCCGCACCATTG 60.153 63.158 0.00 0.00 0.00 2.82
1971 4684 2.370445 CCTCTCCTCCCGCACCATT 61.370 63.158 0.00 0.00 0.00 3.16
1972 4685 2.611964 ATCCTCTCCTCCCGCACCAT 62.612 60.000 0.00 0.00 0.00 3.55
1973 4686 1.944896 TATCCTCTCCTCCCGCACCA 61.945 60.000 0.00 0.00 0.00 4.17
1974 4687 1.152525 TATCCTCTCCTCCCGCACC 60.153 63.158 0.00 0.00 0.00 5.01
1975 4688 1.182385 CCTATCCTCTCCTCCCGCAC 61.182 65.000 0.00 0.00 0.00 5.34
1976 4689 1.153989 CCTATCCTCTCCTCCCGCA 59.846 63.158 0.00 0.00 0.00 5.69
1977 4690 0.610785 CTCCTATCCTCTCCTCCCGC 60.611 65.000 0.00 0.00 0.00 6.13
1978 4691 1.068948 TCTCCTATCCTCTCCTCCCG 58.931 60.000 0.00 0.00 0.00 5.14
1979 4692 1.271707 CGTCTCCTATCCTCTCCTCCC 60.272 61.905 0.00 0.00 0.00 4.30
1980 4693 1.271707 CCGTCTCCTATCCTCTCCTCC 60.272 61.905 0.00 0.00 0.00 4.30
1981 4694 1.700739 TCCGTCTCCTATCCTCTCCTC 59.299 57.143 0.00 0.00 0.00 3.71
1982 4695 1.702957 CTCCGTCTCCTATCCTCTCCT 59.297 57.143 0.00 0.00 0.00 3.69
1983 4696 1.271707 CCTCCGTCTCCTATCCTCTCC 60.272 61.905 0.00 0.00 0.00 3.71
1984 4697 1.700739 TCCTCCGTCTCCTATCCTCTC 59.299 57.143 0.00 0.00 0.00 3.20
1985 4698 1.822425 TCCTCCGTCTCCTATCCTCT 58.178 55.000 0.00 0.00 0.00 3.69
1986 4699 2.106857 TCTTCCTCCGTCTCCTATCCTC 59.893 54.545 0.00 0.00 0.00 3.71
1987 4700 2.107552 CTCTTCCTCCGTCTCCTATCCT 59.892 54.545 0.00 0.00 0.00 3.24
1988 4701 2.510613 CTCTTCCTCCGTCTCCTATCC 58.489 57.143 0.00 0.00 0.00 2.59
1989 4702 2.158579 ACCTCTTCCTCCGTCTCCTATC 60.159 54.545 0.00 0.00 0.00 2.08
1990 4703 1.854280 ACCTCTTCCTCCGTCTCCTAT 59.146 52.381 0.00 0.00 0.00 2.57
1991 4704 1.296984 ACCTCTTCCTCCGTCTCCTA 58.703 55.000 0.00 0.00 0.00 2.94
1992 4705 1.213430 CTACCTCTTCCTCCGTCTCCT 59.787 57.143 0.00 0.00 0.00 3.69
1993 4706 1.682740 CTACCTCTTCCTCCGTCTCC 58.317 60.000 0.00 0.00 0.00 3.71
1994 4707 1.212441 TCCTACCTCTTCCTCCGTCTC 59.788 57.143 0.00 0.00 0.00 3.36
1995 4708 1.213430 CTCCTACCTCTTCCTCCGTCT 59.787 57.143 0.00 0.00 0.00 4.18
1996 4709 1.212441 TCTCCTACCTCTTCCTCCGTC 59.788 57.143 0.00 0.00 0.00 4.79
1997 4710 1.296984 TCTCCTACCTCTTCCTCCGT 58.703 55.000 0.00 0.00 0.00 4.69
1998 4711 2.668144 ATCTCCTACCTCTTCCTCCG 57.332 55.000 0.00 0.00 0.00 4.63
1999 4712 7.243091 AGTTATTATCTCCTACCTCTTCCTCC 58.757 42.308 0.00 0.00 0.00 4.30
2000 4713 8.715190 AAGTTATTATCTCCTACCTCTTCCTC 57.285 38.462 0.00 0.00 0.00 3.71
2010 4723 9.284968 GGCAAGCAATAAAGTTATTATCTCCTA 57.715 33.333 0.00 0.00 32.39 2.94
2011 4724 7.231519 GGGCAAGCAATAAAGTTATTATCTCCT 59.768 37.037 0.00 0.00 32.39 3.69
2012 4725 7.231519 AGGGCAAGCAATAAAGTTATTATCTCC 59.768 37.037 0.00 0.00 32.39 3.71
2013 4726 8.171164 AGGGCAAGCAATAAAGTTATTATCTC 57.829 34.615 0.00 0.00 32.39 2.75
2014 4727 7.779798 TGAGGGCAAGCAATAAAGTTATTATCT 59.220 33.333 0.00 0.00 32.39 1.98
2015 4728 7.940850 TGAGGGCAAGCAATAAAGTTATTATC 58.059 34.615 0.00 0.00 32.39 1.75
2016 4729 7.896383 TGAGGGCAAGCAATAAAGTTATTAT 57.104 32.000 0.00 0.00 32.39 1.28
2017 4730 7.710676 TTGAGGGCAAGCAATAAAGTTATTA 57.289 32.000 0.00 0.00 32.39 0.98
2018 4731 6.603940 TTGAGGGCAAGCAATAAAGTTATT 57.396 33.333 0.00 0.00 33.82 1.40
2019 4732 6.351286 CCTTTGAGGGCAAGCAATAAAGTTAT 60.351 38.462 0.00 0.00 35.04 1.89
2020 4733 5.047377 CCTTTGAGGGCAAGCAATAAAGTTA 60.047 40.000 0.00 0.00 35.04 2.24
2021 4734 4.262592 CCTTTGAGGGCAAGCAATAAAGTT 60.263 41.667 0.00 0.00 35.04 2.66
2022 4735 3.259123 CCTTTGAGGGCAAGCAATAAAGT 59.741 43.478 0.00 0.00 35.04 2.66
2023 4736 3.853475 CCTTTGAGGGCAAGCAATAAAG 58.147 45.455 0.00 0.00 35.04 1.85
2024 4737 3.959535 CCTTTGAGGGCAAGCAATAAA 57.040 42.857 0.00 0.00 35.04 1.40
2036 4749 3.809832 CGTATAATCAGCACCCTTTGAGG 59.190 47.826 0.00 0.00 34.30 3.86
2037 4750 4.693283 TCGTATAATCAGCACCCTTTGAG 58.307 43.478 0.00 0.00 0.00 3.02
2038 4751 4.746535 TCGTATAATCAGCACCCTTTGA 57.253 40.909 0.00 0.00 0.00 2.69
2039 4752 8.948631 ATATATCGTATAATCAGCACCCTTTG 57.051 34.615 0.00 0.00 0.00 2.77
2043 4756 9.477484 CCTTTATATATCGTATAATCAGCACCC 57.523 37.037 0.00 0.00 0.00 4.61
2044 4757 8.979574 GCCTTTATATATCGTATAATCAGCACC 58.020 37.037 0.00 0.00 0.00 5.01
2045 4758 8.979574 GGCCTTTATATATCGTATAATCAGCAC 58.020 37.037 0.00 0.00 0.00 4.40
2046 4759 8.148351 GGGCCTTTATATATCGTATAATCAGCA 58.852 37.037 0.84 0.00 0.00 4.41
2047 4760 7.603024 GGGGCCTTTATATATCGTATAATCAGC 59.397 40.741 0.84 0.00 0.00 4.26
2048 4761 8.647796 TGGGGCCTTTATATATCGTATAATCAG 58.352 37.037 0.84 0.00 0.00 2.90
2049 4762 8.555896 TGGGGCCTTTATATATCGTATAATCA 57.444 34.615 0.84 0.00 0.00 2.57
2050 4763 9.436957 CATGGGGCCTTTATATATCGTATAATC 57.563 37.037 0.84 0.00 0.00 1.75
2051 4764 8.383175 CCATGGGGCCTTTATATATCGTATAAT 58.617 37.037 2.85 0.00 0.00 1.28
2052 4765 7.202149 CCCATGGGGCCTTTATATATCGTATAA 60.202 40.741 24.53 0.00 35.35 0.98
2053 4766 6.271391 CCCATGGGGCCTTTATATATCGTATA 59.729 42.308 24.53 0.00 35.35 1.47
2054 4767 5.073144 CCCATGGGGCCTTTATATATCGTAT 59.927 44.000 24.53 0.00 35.35 3.06
2055 4768 4.410883 CCCATGGGGCCTTTATATATCGTA 59.589 45.833 24.53 0.00 35.35 3.43
2056 4769 3.202151 CCCATGGGGCCTTTATATATCGT 59.798 47.826 24.53 0.00 35.35 3.73
2057 4770 3.820557 CCCATGGGGCCTTTATATATCG 58.179 50.000 24.53 0.00 35.35 2.92
2071 4784 0.532115 GTTTGTTAGCAGCCCATGGG 59.468 55.000 27.87 27.87 38.57 4.00
2072 4785 1.549203 AGTTTGTTAGCAGCCCATGG 58.451 50.000 4.14 4.14 0.00 3.66
2073 4786 3.609853 TCTAGTTTGTTAGCAGCCCATG 58.390 45.455 0.00 0.00 0.00 3.66
2074 4787 4.301072 TTCTAGTTTGTTAGCAGCCCAT 57.699 40.909 0.00 0.00 0.00 4.00
2075 4788 3.780804 TTCTAGTTTGTTAGCAGCCCA 57.219 42.857 0.00 0.00 0.00 5.36
2076 4789 3.190744 GGTTTCTAGTTTGTTAGCAGCCC 59.809 47.826 0.00 0.00 0.00 5.19
2077 4790 4.072839 AGGTTTCTAGTTTGTTAGCAGCC 58.927 43.478 0.00 0.00 0.00 4.85
2078 4791 6.986904 ATAGGTTTCTAGTTTGTTAGCAGC 57.013 37.500 0.00 0.00 0.00 5.25
2079 4792 7.758528 ACGTATAGGTTTCTAGTTTGTTAGCAG 59.241 37.037 0.00 0.00 0.00 4.24
2080 4793 7.605449 ACGTATAGGTTTCTAGTTTGTTAGCA 58.395 34.615 0.00 0.00 0.00 3.49
2081 4794 9.573133 TTACGTATAGGTTTCTAGTTTGTTAGC 57.427 33.333 2.98 0.00 0.00 3.09
2084 4797 9.762933 TTGTTACGTATAGGTTTCTAGTTTGTT 57.237 29.630 2.98 0.00 0.00 2.83
2085 4798 9.762933 TTTGTTACGTATAGGTTTCTAGTTTGT 57.237 29.630 2.98 0.00 0.00 2.83
2087 4800 9.987272 AGTTTGTTACGTATAGGTTTCTAGTTT 57.013 29.630 2.98 0.00 0.00 2.66
2092 4805 9.018582 AGACTAGTTTGTTACGTATAGGTTTCT 57.981 33.333 2.98 0.00 0.00 2.52
2093 4806 9.631452 AAGACTAGTTTGTTACGTATAGGTTTC 57.369 33.333 2.98 0.00 0.00 2.78
2094 4807 9.987272 AAAGACTAGTTTGTTACGTATAGGTTT 57.013 29.630 2.98 0.00 0.00 3.27
2095 4808 9.987272 AAAAGACTAGTTTGTTACGTATAGGTT 57.013 29.630 2.98 0.00 0.00 3.50
2121 4834 9.310449 GGTCCTGATACATTAGTTCCTAGAATA 57.690 37.037 0.00 0.00 0.00 1.75
2122 4835 7.789831 TGGTCCTGATACATTAGTTCCTAGAAT 59.210 37.037 0.00 0.00 0.00 2.40
2123 4836 7.130099 TGGTCCTGATACATTAGTTCCTAGAA 58.870 38.462 0.00 0.00 0.00 2.10
2124 4837 6.679542 TGGTCCTGATACATTAGTTCCTAGA 58.320 40.000 0.00 0.00 0.00 2.43
2125 4838 6.015010 CCTGGTCCTGATACATTAGTTCCTAG 60.015 46.154 0.00 0.00 0.00 3.02
2126 4839 5.839063 CCTGGTCCTGATACATTAGTTCCTA 59.161 44.000 0.00 0.00 0.00 2.94
2127 4840 4.656112 CCTGGTCCTGATACATTAGTTCCT 59.344 45.833 0.00 0.00 0.00 3.36
2128 4841 4.654262 TCCTGGTCCTGATACATTAGTTCC 59.346 45.833 0.00 0.00 0.00 3.62
2129 4842 5.364157 AGTCCTGGTCCTGATACATTAGTTC 59.636 44.000 0.00 0.00 0.00 3.01
2130 4843 5.281314 AGTCCTGGTCCTGATACATTAGTT 58.719 41.667 0.00 0.00 0.00 2.24
2131 4844 4.884961 AGTCCTGGTCCTGATACATTAGT 58.115 43.478 0.00 0.00 0.00 2.24
2132 4845 4.282195 GGAGTCCTGGTCCTGATACATTAG 59.718 50.000 0.41 0.00 0.00 1.73
2133 4846 4.078571 AGGAGTCCTGGTCCTGATACATTA 60.079 45.833 12.07 0.00 43.24 1.90
2134 4847 3.041946 GGAGTCCTGGTCCTGATACATT 58.958 50.000 0.41 0.00 0.00 2.71
2135 4848 2.248686 AGGAGTCCTGGTCCTGATACAT 59.751 50.000 12.07 0.00 43.24 2.29
2136 4849 1.646447 AGGAGTCCTGGTCCTGATACA 59.354 52.381 12.07 0.00 43.24 2.29
2137 4850 2.463047 AGGAGTCCTGGTCCTGATAC 57.537 55.000 12.07 0.00 43.24 2.24
2148 4861 2.948382 TAGGCTGGGCAGGAGTCCT 61.948 63.158 5.62 5.62 41.31 3.85
2149 4862 2.365635 TAGGCTGGGCAGGAGTCC 60.366 66.667 0.00 0.00 41.04 3.85
2150 4863 2.904131 GTAGGCTGGGCAGGAGTC 59.096 66.667 0.00 0.00 0.00 3.36
2151 4864 3.077556 CGTAGGCTGGGCAGGAGT 61.078 66.667 0.00 0.00 0.00 3.85
2152 4865 4.537433 GCGTAGGCTGGGCAGGAG 62.537 72.222 0.00 0.00 35.83 3.69
2163 4876 2.028190 CATCAGGCGAGGCGTAGG 59.972 66.667 0.00 0.00 0.00 3.18
2164 4877 2.659897 GCATCAGGCGAGGCGTAG 60.660 66.667 0.86 0.00 39.45 3.51
2211 4924 4.814294 CGTCCTACAGGCGTGGGC 62.814 72.222 11.67 0.00 43.35 5.36
2212 4925 3.379445 ACGTCCTACAGGCGTGGG 61.379 66.667 11.67 3.33 44.99 4.61
2215 4928 4.065281 GGCACGTCCTACAGGCGT 62.065 66.667 10.60 10.60 44.39 5.68
2216 4929 4.814294 GGGCACGTCCTACAGGCG 62.814 72.222 9.55 9.55 39.44 5.52
2217 4930 4.468689 GGGGCACGTCCTACAGGC 62.469 72.222 0.00 0.00 34.44 4.85
2218 4931 3.000819 TGGGGCACGTCCTACAGG 61.001 66.667 0.00 0.00 34.39 4.00
2219 4932 2.264794 GTGGGGCACGTCCTACAG 59.735 66.667 5.09 0.00 38.07 2.74
2220 4933 2.524640 TGTGGGGCACGTCCTACA 60.525 61.111 8.20 8.20 44.34 2.74
2221 4934 1.449601 CATGTGGGGCACGTCCTAC 60.450 63.158 3.16 3.16 37.14 3.18
2222 4935 1.610967 TCATGTGGGGCACGTCCTA 60.611 57.895 0.00 0.00 37.14 2.94
2223 4936 2.927856 TCATGTGGGGCACGTCCT 60.928 61.111 0.00 0.00 37.14 3.85
2224 4937 2.746277 GTCATGTGGGGCACGTCC 60.746 66.667 0.00 0.00 37.14 4.79
2225 4938 0.107897 TATGTCATGTGGGGCACGTC 60.108 55.000 0.00 0.00 37.14 4.34
2226 4939 0.546122 ATATGTCATGTGGGGCACGT 59.454 50.000 0.00 0.00 37.14 4.49
2227 4940 0.946528 CATATGTCATGTGGGGCACG 59.053 55.000 1.73 0.00 37.14 5.34
2228 4941 2.057137 ACATATGTCATGTGGGGCAC 57.943 50.000 13.45 0.00 34.56 5.01
2229 4942 2.241941 AGAACATATGTCATGTGGGGCA 59.758 45.455 9.23 0.00 31.80 5.36
2230 4943 2.620115 CAGAACATATGTCATGTGGGGC 59.380 50.000 9.23 3.28 31.80 5.80
2231 4944 2.620115 GCAGAACATATGTCATGTGGGG 59.380 50.000 9.23 2.22 31.80 4.96
2232 4945 2.620115 GGCAGAACATATGTCATGTGGG 59.380 50.000 9.23 2.52 31.80 4.61
2233 4946 3.314357 CAGGCAGAACATATGTCATGTGG 59.686 47.826 9.23 2.16 31.80 4.17
2234 4947 3.943381 ACAGGCAGAACATATGTCATGTG 59.057 43.478 9.23 7.94 31.80 3.21
2235 4948 4.226427 ACAGGCAGAACATATGTCATGT 57.774 40.909 9.23 7.73 0.00 3.21
2236 4949 6.872628 ATAACAGGCAGAACATATGTCATG 57.127 37.500 9.23 11.80 0.00 3.07
2237 4950 8.377799 TCATATAACAGGCAGAACATATGTCAT 58.622 33.333 9.23 0.00 31.40 3.06
2238 4951 7.734942 TCATATAACAGGCAGAACATATGTCA 58.265 34.615 9.23 0.00 31.40 3.58
2239 4952 8.499162 GTTCATATAACAGGCAGAACATATGTC 58.501 37.037 9.23 3.13 36.35 3.06
2240 4953 7.445402 GGTTCATATAACAGGCAGAACATATGT 59.555 37.037 1.41 1.41 37.64 2.29
2241 4954 7.663081 AGGTTCATATAACAGGCAGAACATATG 59.337 37.037 0.00 0.00 37.64 1.78
2242 4955 7.749666 AGGTTCATATAACAGGCAGAACATAT 58.250 34.615 0.00 0.00 37.64 1.78
2243 4956 7.136822 AGGTTCATATAACAGGCAGAACATA 57.863 36.000 0.00 0.00 37.64 2.29
2244 4957 6.006275 AGGTTCATATAACAGGCAGAACAT 57.994 37.500 0.00 0.00 37.64 2.71
2245 4958 5.435686 AGGTTCATATAACAGGCAGAACA 57.564 39.130 0.00 0.00 37.64 3.18
2246 4959 6.073003 GCATAGGTTCATATAACAGGCAGAAC 60.073 42.308 0.00 0.00 35.77 3.01
2247 4960 5.997746 GCATAGGTTCATATAACAGGCAGAA 59.002 40.000 0.00 0.00 0.00 3.02
2248 4961 5.307976 AGCATAGGTTCATATAACAGGCAGA 59.692 40.000 0.00 0.00 0.00 4.26
2249 4962 5.555017 AGCATAGGTTCATATAACAGGCAG 58.445 41.667 0.00 0.00 0.00 4.85
2250 4963 5.567037 AGCATAGGTTCATATAACAGGCA 57.433 39.130 0.00 0.00 0.00 4.75
2251 4964 7.106239 ACATAGCATAGGTTCATATAACAGGC 58.894 38.462 0.00 0.00 26.50 4.85
2252 4965 7.766278 GGACATAGCATAGGTTCATATAACAGG 59.234 40.741 0.00 0.00 34.69 4.00
2275 4988 9.916397 CAAAACATATTAGAGAATGTTACGGAC 57.084 33.333 1.48 0.00 43.66 4.79
2340 5065 8.125978 AGGAAATGAAATGAGCACATAAAAGA 57.874 30.769 0.00 0.00 35.50 2.52
2352 5077 6.716628 ACTCACTGCTTTAGGAAATGAAATGA 59.283 34.615 0.00 0.00 0.00 2.57
2365 5090 7.476540 TGGAAGATAGTTACTCACTGCTTTA 57.523 36.000 0.00 0.00 35.97 1.85
2449 5174 6.638468 GCACCGATCAATCATTTTCCTAAATC 59.362 38.462 0.00 0.00 31.63 2.17
2540 5266 9.811655 CGATGCAAACAATTAAGATATTCGTAT 57.188 29.630 0.00 0.00 0.00 3.06
2542 5268 7.693952 ACGATGCAAACAATTAAGATATTCGT 58.306 30.769 0.00 0.00 0.00 3.85
2544 5270 9.289303 ACAACGATGCAAACAATTAAGATATTC 57.711 29.630 0.00 0.00 0.00 1.75
2644 5372 8.911247 AAAATCGCTAAGTGGAAATAAATGTC 57.089 30.769 0.00 0.00 0.00 3.06
2649 5377 8.353684 TGTTCAAAAATCGCTAAGTGGAAATAA 58.646 29.630 0.00 0.00 0.00 1.40
2651 5379 6.744112 TGTTCAAAAATCGCTAAGTGGAAAT 58.256 32.000 0.00 0.00 0.00 2.17
2661 5389 5.502220 GCACATGTTTTGTTCAAAAATCGCT 60.502 36.000 11.47 0.00 36.00 4.93
2662 5390 4.665734 GCACATGTTTTGTTCAAAAATCGC 59.334 37.500 11.47 7.49 36.00 4.58
2663 5391 5.793675 TGCACATGTTTTGTTCAAAAATCG 58.206 33.333 11.47 6.36 36.00 3.34
2672 5411 3.126686 GCTGGTTTTGCACATGTTTTGTT 59.873 39.130 0.00 0.00 36.00 2.83
2705 5451 1.607148 ACGGCAAAGAACAGTAAAGCC 59.393 47.619 0.00 0.00 37.32 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.