AutoCloner

Multiple sequence alignment - TraesCS7A01G510300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G510300	chr7A	100.000	5843	0	0	1	5843	697822636	697828478	0.000000e+00	10791.0
1	TraesCS7A01G510300	chr7A	95.646	4754	165	16	5	4725	697877282	697882026	0.000000e+00	7594.0
2	TraesCS7A01G510300	chr7A	95.896	4581	149	18	1	4544	697974829	697979407	0.000000e+00	7382.0
3	TraesCS7A01G510300	chr7A	97.471	1305	32	1	4540	5843	697981514	697982818	0.000000e+00	2226.0
4	TraesCS7A01G510300	chr7A	97.059	952	25	3	4893	5843	697882026	697882975	0.000000e+00	1600.0
5	TraesCS7A01G510300	chr7A	90.517	928	81	6	4387	5310	698131758	698132682	0.000000e+00	1219.0
6	TraesCS7A01G510300	chr7A	92.257	452	34	1	1	451	698131293	698131744	1.780000e-179	640.0
7	TraesCS7A01G510300	chr7A	85.714	70	5	5	5469	5538	718491123	718491059	1.050000e-07	69.4
8	TraesCS7A01G510300	chr7D	92.200	4654	279	33	878	5469	606010719	606015350	0.000000e+00	6506.0
9	TraesCS7A01G510300	chr7D	92.302	4352	265	33	1180	5470	606107122	606111464	0.000000e+00	6117.0
10	TraesCS7A01G510300	chr7D	93.563	3402	194	13	2087	5469	605957465	605960860	0.000000e+00	5046.0
11	TraesCS7A01G510300	chr7D	91.052	3118	230	22	2126	5221	606182717	606185807	0.000000e+00	4167.0
12	TraesCS7A01G510300	chr7D	88.690	3298	247	47	953	4184	606301763	606305000	0.000000e+00	3908.0
13	TraesCS7A01G510300	chr7D	90.781	1421	82	23	705	2095	605947107	605948508	0.000000e+00	1853.0
14	TraesCS7A01G510300	chr7D	91.019	991	54	14	1180	2137	606181448	606182436	0.000000e+00	1304.0
15	TraesCS7A01G510300	chr7D	89.703	1010	91	10	4218	5221	606305004	606306006	0.000000e+00	1277.0
16	TraesCS7A01G510300	chr7D	89.945	547	35	5	645	1173	606106519	606107063	0.000000e+00	688.0
17	TraesCS7A01G510300	chr7D	87.197	578	49	14	606	1173	606180827	606181389	8.260000e-178	634.0
18	TraesCS7A01G510300	chr7D	83.333	552	66	16	297	845	606301178	606301706	2.450000e-133	486.0
19	TraesCS7A01G510300	chr7D	85.280	428	42	13	296	704	605946647	605947072	7.000000e-114	422.0
20	TraesCS7A01G510300	chr7D	83.791	364	46	8	298	650	606180334	606180695	3.370000e-87	333.0
21	TraesCS7A01G510300	chr7B	90.068	4390	367	28	878	5221	690094234	690098600	0.000000e+00	5627.0
22	TraesCS7A01G510300	chr7B	90.033	3943	327	29	1336	5234	690080898	690084818	0.000000e+00	5044.0
23	TraesCS7A01G510300	chr7B	90.306	3270	282	19	1966	5221	690031465	690034713	0.000000e+00	4250.0
24	TraesCS7A01G510300	chr7B	90.177	2311	185	15	1919	4192	690200568	690202873	0.000000e+00	2972.0
25	TraesCS7A01G510300	chr7B	90.412	1481	95	20	878	2316	690119695	690121170	0.000000e+00	1905.0
26	TraesCS7A01G510300	chr7B	91.339	1120	66	13	849	1941	690030081	690031196	0.000000e+00	1502.0
27	TraesCS7A01G510300	chr7B	89.782	1008	91	6	4218	5221	690202870	690203869	0.000000e+00	1280.0
28	TraesCS7A01G510300	chr7B	93.774	257	15	1	334	589	690029642	690029898	9.180000e-103	385.0
29	TraesCS7A01G510300	chr7B	87.417	302	21	11	296	594	690198863	690199150	1.210000e-86	331.0
30	TraesCS7A01G510300	chr7B	87.671	146	14	2	707	851	690094095	690094237	3.620000e-37	167.0
31	TraesCS7A01G510300	chr7B	87.671	146	14	2	707	851	690119556	690119698	3.620000e-37	167.0
32	TraesCS7A01G510300	chr7B	95.062	81	4	0	624	704	690029984	690030064	1.710000e-25	128.0
33	TraesCS7A01G510300	chr7B	86.154	65	4	5	5469	5533	379186133	379186074	1.360000e-06	65.8
34	TraesCS7A01G510300	chr5D	87.789	303	34	1	1	300	424080013	424080315	9.320000e-93	351.0
35	TraesCS7A01G510300	chr5D	86.557	305	30	4	3	300	276266213	276265913	5.650000e-85	326.0
36	TraesCS7A01G510300	chr3D	87.667	300	37	0	1	300	586370121	586369822	3.350000e-92	350.0
37	TraesCS7A01G510300	chr3D	100.000	31	0	0	300	330	445041350	445041380	2.270000e-04	58.4
38	TraesCS7A01G510300	chr1A	87.213	305	34	3	1	300	32742834	32742530	5.610000e-90	342.0
39	TraesCS7A01G510300	chr6D	86.333	300	37	2	1	300	292078223	292078518	2.030000e-84	324.0
40	TraesCS7A01G510300	chr2D	86.139	303	38	2	1	300	629575186	629575487	2.030000e-84	324.0
41	TraesCS7A01G510300	chrUn	84.488	303	37	9	5550	5843	343347026	343347327	2.060000e-74	291.0
42	TraesCS7A01G510300	chrUn	87.671	146	14	2	707	851	477661877	477662019	3.620000e-37	167.0
43	TraesCS7A01G510300	chr1B	83.498	303	40	9	5550	5843	73235180	73234879	2.070000e-69	274.0
44	TraesCS7A01G510300	chr6A	88.785	107	6	1	5578	5678	6430061	6429955	6.150000e-25	126.0
45	TraesCS7A01G510300	chr6A	89.091	55	3	2	5455	5509	364069297	364069348	1.360000e-06	65.8
46	TraesCS7A01G510300	chr4B	95.833	48	0	1	5469	5516	240186859	240186814	6.280000e-10	76.8
47	TraesCS7A01G510300	chr2A	89.831	59	3	2	5469	5527	718830128	718830073	8.120000e-09	73.1
48	TraesCS7A01G510300	chr1D	86.364	66	5	3	5469	5533	468432910	468432848	1.050000e-07	69.4
49	TraesCS7A01G510300	chr2B	86.154	65	5	3	5469	5533	127200794	127200734	3.780000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G510300	chr7A	697822636	697828478	5842	False	10791.000000	10791	100.000000	1	5843	1	chr7A.!!$F1	5842
1	TraesCS7A01G510300	chr7A	697974829	697982818	7989	False	4804.000000	7382	96.683500	1	5843	2	chr7A.!!$F3	5842
2	TraesCS7A01G510300	chr7A	697877282	697882975	5693	False	4597.000000	7594	96.352500	5	5843	2	chr7A.!!$F2	5838
3	TraesCS7A01G510300	chr7A	698131293	698132682	1389	False	929.500000	1219	91.387000	1	5310	2	chr7A.!!$F4	5309
4	TraesCS7A01G510300	chr7D	606010719	606015350	4631	False	6506.000000	6506	92.200000	878	5469	1	chr7D.!!$F2	4591
5	TraesCS7A01G510300	chr7D	605957465	605960860	3395	False	5046.000000	5046	93.563000	2087	5469	1	chr7D.!!$F1	3382
6	TraesCS7A01G510300	chr7D	606106519	606111464	4945	False	3402.500000	6117	91.123500	645	5470	2	chr7D.!!$F4	4825
7	TraesCS7A01G510300	chr7D	606301178	606306006	4828	False	1890.333333	3908	87.242000	297	5221	3	chr7D.!!$F6	4924
8	TraesCS7A01G510300	chr7D	606180334	606185807	5473	False	1609.500000	4167	88.264750	298	5221	4	chr7D.!!$F5	4923
9	TraesCS7A01G510300	chr7D	605946647	605948508	1861	False	1137.500000	1853	88.030500	296	2095	2	chr7D.!!$F3	1799
10	TraesCS7A01G510300	chr7B	690080898	690084818	3920	False	5044.000000	5044	90.033000	1336	5234	1	chr7B.!!$F1	3898
11	TraesCS7A01G510300	chr7B	690094095	690098600	4505	False	2897.000000	5627	88.869500	707	5221	2	chr7B.!!$F3	4514
12	TraesCS7A01G510300	chr7B	690029642	690034713	5071	False	1566.250000	4250	92.620250	334	5221	4	chr7B.!!$F2	4887
13	TraesCS7A01G510300	chr7B	690198863	690203869	5006	False	1527.666667	2972	89.125333	296	5221	3	chr7B.!!$F5	4925
14	TraesCS7A01G510300	chr7B	690119556	690121170	1614	False	1036.000000	1905	89.041500	707	2316	2	chr7B.!!$F4	1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
50	51	0.397957	GGGTCTTCCTCCTCCTCCTC	60.398	65.000	0.00	0.00	0.00	3.71	F
1657	2225	0.961753	CCTTTCAGCCTGAACCAACC	59.038	55.000	6.65	0.00	35.89	3.77	F
1814	2386	0.251742	CCAATGGGTTCCTTGCCTGA	60.252	55.000	0.00	0.00	0.00	3.86	F
1816	2388	1.273327	CAATGGGTTCCTTGCCTGAAC	59.727	52.381	0.00	0.00	41.05	3.18	F
1847	2452	1.639108	AGGGGAATGGAAGTGGTAACC	59.361	52.381	0.00	0.00	0.00	2.85	F
3282	4479	2.679837	CGAAGCAATAAGGCACATCAGT	59.320	45.455	0.00	0.00	35.83	3.41	F
4081	5283	3.248266	GCAGAACCATGAACATGAAAGC	58.752	45.455	15.21	8.48	41.20	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1803	2375	0.178992	CCACTGGTTCAGGCAAGGAA	60.179	55.000	0.00	0.00	35.51	3.36	R
3152	4349	1.672854	TATCCCCTTCGTCACAGCCG	61.673	60.000	0.00	0.00	0.00	5.52	R
3716	4913	2.258755	CCCCAAAAATAAAAGCTCGCG	58.741	47.619	0.00	0.00	0.00	5.87	R
4063	5265	3.507233	TCCAGCTTTCATGTTCATGGTTC	59.493	43.478	12.02	1.61	0.00	3.62	R
4081	5283	0.319728	CACCTGAGGACACACTCCAG	59.680	60.000	4.99	0.00	42.46	3.86	R
4085	5287	1.130054	ATGCCACCTGAGGACACACT	61.130	55.000	4.99	0.00	0.00	3.55	R
4892	8207	2.250188	CAATTAAAAGCTCCCAACGCG	58.750	47.619	3.53	3.53	0.00	6.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	1.707200	GGGTCTTCCTCCTCCTCCT	59.293	63.158	0.00	0.00	0.00	3.69
50	51	0.397957	GGGTCTTCCTCCTCCTCCTC	60.398	65.000	0.00	0.00	0.00	3.71
83	84	2.151307	TACCACTCCTCCAGGACGCT	62.151	60.000	0.00	0.00	39.78	5.07
86	87	2.681778	CTCCTCCAGGACGCTGGT	60.682	66.667	8.68	0.00	44.53	4.00
89	90	4.007644	CTCCAGGACGCTGGTGCA	62.008	66.667	8.68	0.00	44.53	4.57
93	94	4.235762	AGGACGCTGGTGCACGTT	62.236	61.111	11.45	0.00	43.71	3.99
163	164	1.018752	CACCGGCATCGTCATCAACA	61.019	55.000	0.00	0.00	33.95	3.33
169	170	1.452110	CATCGTCATCAACAAGGGCA	58.548	50.000	0.00	0.00	0.00	5.36
215	216	1.153549	GCCTCGTCAAGCCGAAGAT	60.154	57.895	0.00	0.00	36.24	2.40
222	223	1.078214	CAAGCCGAAGATGGAGCCA	60.078	57.895	0.00	0.00	0.00	4.75
311	312	3.249799	CGGAAAGTTTGTGTATGTGAGCA	59.750	43.478	0.00	0.00	0.00	4.26
317	318	4.881273	AGTTTGTGTATGTGAGCAACTTCA	59.119	37.500	0.00	0.00	0.00	3.02
325	326	6.484977	TGTATGTGAGCAACTTCAATTGTACA	59.515	34.615	5.13	0.00	31.83	2.90
388	391	1.276989	CGTCCCTGCAAAGGTAGGTAA	59.723	52.381	2.51	0.00	44.69	2.85
428	431	3.103911	AACGCGCTCTCCGTTTCG	61.104	61.111	5.73	0.00	45.56	3.46
451	454	3.304928	GGTCAATGGAAGCACAAAGACAG	60.305	47.826	0.00	0.00	32.93	3.51
456	460	2.170397	TGGAAGCACAAAGACAGTCTGA	59.830	45.455	6.91	0.00	0.00	3.27
546	556	7.491048	GCTCCAACATTTGTTAAGAAAAGAACA	59.509	33.333	7.25	0.00	36.32	3.18
547	557	9.364989	CTCCAACATTTGTTAAGAAAAGAACAA	57.635	29.630	7.25	0.00	42.31	2.83
630	871	7.745594	GCACCAAAATACATGCACAAAATTAAG	59.254	33.333	0.00	0.00	38.00	1.85
1225	1787	5.360714	AGCCTTGTGATCTTTTTGTTTCTCA	59.639	36.000	0.00	0.00	0.00	3.27
1600	2168	3.182590	ATGCACGGCACACTCACCT	62.183	57.895	0.50	0.00	43.04	4.00
1657	2225	0.961753	CCTTTCAGCCTGAACCAACC	59.038	55.000	6.65	0.00	35.89	3.77
1812	2384	4.872293	CCAATGGGTTCCTTGCCT	57.128	55.556	0.00	0.00	0.00	4.75
1813	2385	2.279842	CCAATGGGTTCCTTGCCTG	58.720	57.895	0.00	0.00	0.00	4.85
1814	2386	0.251742	CCAATGGGTTCCTTGCCTGA	60.252	55.000	0.00	0.00	0.00	3.86
1815	2387	1.631405	CAATGGGTTCCTTGCCTGAA	58.369	50.000	0.00	0.00	0.00	3.02
1816	2388	1.273327	CAATGGGTTCCTTGCCTGAAC	59.727	52.381	0.00	0.00	41.05	3.18
1847	2452	1.639108	AGGGGAATGGAAGTGGTAACC	59.361	52.381	0.00	0.00	0.00	2.85
1862	2467	5.186021	AGTGGTAACCTGTGAGTTATGAGAG	59.814	44.000	0.00	0.00	34.85	3.20
2077	2926	6.040955	TCAATACATAGTGCCTGAAGTCTAGG	59.959	42.308	0.00	0.00	38.39	3.02
2155	3303	2.866156	CACTCCTATGCAATGTACACCG	59.134	50.000	0.00	0.00	0.00	4.94
3152	4349	4.026145	GCTATCTGAAGATTGCGACAAGAC	60.026	45.833	10.26	0.00	41.69	3.01
3282	4479	2.679837	CGAAGCAATAAGGCACATCAGT	59.320	45.455	0.00	0.00	35.83	3.41
3350	4547	5.766670	CCAAGAGCAATGATGGAGCTAATAA	59.233	40.000	0.00	0.00	39.02	1.40
3518	4715	8.491331	AATGACAAAACACTTGTTGCTATTTT	57.509	26.923	0.00	0.00	38.44	1.82
3520	4717	6.105657	ACAAAACACTTGTTGCTATTTTGC	57.894	33.333	7.06	0.00	39.50	3.68
3822	5022	5.127845	TGTTTGTCCTTGAAAATGTAAGGCA	59.872	36.000	0.00	0.00	42.52	4.75
4081	5283	3.248266	GCAGAACCATGAACATGAAAGC	58.752	45.455	15.21	8.48	41.20	3.51
4085	5287	3.159213	ACCATGAACATGAAAGCTGGA	57.841	42.857	15.21	0.00	41.20	3.86
4606	7919	0.832626	ATGTCGGTGATGCATCTGGA	59.167	50.000	26.32	17.23	0.00	3.86
4821	8134	4.081142	TCGCTGTAGGATTTCATTGGAGAA	60.081	41.667	0.00	0.00	0.00	2.87
5073	8392	6.258727	ACGTTCTGTTATGCTATTTCTGATGG	59.741	38.462	0.00	0.00	0.00	3.51
5206	8531	0.108615	CAGACACACCTTAGGGCGAG	60.109	60.000	2.32	0.00	35.63	5.03
5442	8769	1.320344	TGAGATCCTCGTTCACCCCG	61.320	60.000	0.00	0.00	32.35	5.73
5455	8782	2.393646	TCACCCCGTGATGTGATCATA	58.606	47.619	0.00	0.00	42.04	2.15
5633	8960	0.035458	AGAAAGCACCCACTCTTCCG	59.965	55.000	0.00	0.00	0.00	4.30
5672	8999	4.937620	TCCCTCGTTCATCTTTCTTCATTG	59.062	41.667	0.00	0.00	0.00	2.82
5713	9040	7.262772	CAATAGCACAGAATCAATGACCATTT	58.737	34.615	0.00	0.00	0.00	2.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	0.997307	TGGTAGGAGGATCGGGAGGA	60.997	60.000	0.00	0.00	34.37	3.71
50	51	0.828343	GTGGTAGGAGGATCGGGAGG	60.828	65.000	0.00	0.00	34.37	4.30
93	94	1.214589	GTTCTCGGGCTTGACGCTA	59.785	57.895	0.00	0.00	39.13	4.26
145	146	0.321210	TTGTTGATGACGATGCCGGT	60.321	50.000	1.90	0.00	40.78	5.28
169	170	3.160047	CGAGGAGGAGGCATGGCT	61.160	66.667	23.58	23.58	0.00	4.75
286	287	2.032377	CACATACACAAACTTTCCGCGT	60.032	45.455	4.92	0.00	0.00	6.01
388	391	1.296715	GTCTCAACGGCCACATCCT	59.703	57.895	2.24	0.00	0.00	3.24
428	431	2.029918	GTCTTTGTGCTTCCATTGACCC	60.030	50.000	0.00	0.00	0.00	4.46
435	438	2.170397	TCAGACTGTCTTTGTGCTTCCA	59.830	45.455	7.77	0.00	0.00	3.53
451	454	1.378911	TGCATGGCCATGGTCAGAC	60.379	57.895	39.72	25.22	39.16	3.51
473	477	2.500098	AGGAGATACGCCTGCTTTGTTA	59.500	45.455	0.00	0.00	31.11	2.41
567	583	0.671796	AAAGCAAAACCACGGGCTAC	59.328	50.000	0.00	0.00	35.11	3.58
688	929	2.324330	CCCGTTCTGTTCATGCGCA	61.324	57.895	14.96	14.96	0.00	6.09
1062	1559	0.886563	CAAGGACTCGTAACCCGTCT	59.113	55.000	0.00	0.00	37.94	4.18
1225	1787	2.279741	TCGCAGAAAGCATTATTCGCT	58.720	42.857	0.00	0.00	46.13	4.93
1657	2225	3.769739	TGAATGGTTAGATGGGATCCG	57.230	47.619	5.45	0.00	0.00	4.18
1697	2265	2.440796	TCTACTACCCGGCCCACG	60.441	66.667	0.00	0.00	43.80	4.94
1749	2321	2.203640	ATCCTGCGATCCGGCCTA	60.204	61.111	0.00	0.00	0.00	3.93
1803	2375	0.178992	CCACTGGTTCAGGCAAGGAA	60.179	55.000	0.00	0.00	35.51	3.36
1808	2380	3.579302	CCCCCACTGGTTCAGGCA	61.579	66.667	0.00	0.00	35.51	4.75
1811	2383	2.034687	CTGCCCCCACTGGTTCAG	59.965	66.667	0.00	0.00	37.52	3.02
1812	2384	3.579302	CCTGCCCCCACTGGTTCA	61.579	66.667	0.00	0.00	0.00	3.18
1813	2385	4.366684	CCCTGCCCCCACTGGTTC	62.367	72.222	0.00	0.00	0.00	3.62
1847	2452	4.763073	TCATTGGCTCTCATAACTCACAG	58.237	43.478	0.00	0.00	0.00	3.66
1899	2504	9.935241	ATCACCATGTCTATAGCATACTAAAAG	57.065	33.333	8.67	0.00	30.45	2.27
2155	3303	3.120060	ACACCGAACACATACGAGTAGTC	60.120	47.826	0.00	0.00	0.00	2.59
2303	3459	5.769662	TGTGATTGCAAGGACTAGACATTTT	59.230	36.000	4.94	0.00	0.00	1.82
2972	4155	3.243569	TGGGGAAGCAAACATGTTTTACG	60.244	43.478	21.10	11.45	0.00	3.18
3152	4349	1.672854	TATCCCCTTCGTCACAGCCG	61.673	60.000	0.00	0.00	0.00	5.52
3282	4479	3.638160	TCTGATCGTCATCATCATCACCA	59.362	43.478	0.00	0.00	38.42	4.17
3350	4547	6.057533	TGTGTGTTCTCTTTGTTCTCATCAT	58.942	36.000	0.00	0.00	0.00	2.45
3549	4746	6.742559	TTTTTGGAGTAGCCCCTATAGTAG	57.257	41.667	0.00	0.00	34.97	2.57
3580	4777	6.172136	AGGAAATCGACATTCATCATCTCT	57.828	37.500	13.11	0.00	0.00	3.10
3716	4913	2.258755	CCCCAAAAATAAAAGCTCGCG	58.741	47.619	0.00	0.00	0.00	5.87
4063	5265	3.507233	TCCAGCTTTCATGTTCATGGTTC	59.493	43.478	12.02	1.61	0.00	3.62
4081	5283	0.319728	CACCTGAGGACACACTCCAG	59.680	60.000	4.99	0.00	42.46	3.86
4085	5287	1.130054	ATGCCACCTGAGGACACACT	61.130	55.000	4.99	0.00	0.00	3.55
4221	5423	2.762535	ATAGGGTGTCTGTTGAACCG	57.237	50.000	0.00	0.00	34.62	4.44
4254	5456	3.689347	ACTATGTGCTCATTGAAGCCAA	58.311	40.909	15.43	0.00	41.77	4.52
4417	5619	3.834231	AGCCCATGTTGCTTTCTATGTTT	59.166	39.130	1.35	0.00	34.87	2.83
4606	7919	4.038271	TCCTTCTTGCACATGGAGAATT	57.962	40.909	0.00	0.00	0.00	2.17
4821	8134	1.817087	ATCCATCCATGACAGCCTCT	58.183	50.000	0.00	0.00	0.00	3.69
4892	8207	2.250188	CAATTAAAAGCTCCCAACGCG	58.750	47.619	3.53	3.53	0.00	6.01
4902	8217	3.912496	AGGGAATGGCCAATTAAAAGC	57.088	42.857	10.96	0.00	38.95	3.51
5354	8681	9.787435	ATCTAATGGCCGTATAATTTTAGTCAA	57.213	29.630	0.00	0.00	0.00	3.18
5370	8697	7.771183	TGTCACTTAAATCAAATCTAATGGCC	58.229	34.615	0.00	0.00	0.00	5.36
5442	8769	9.539825	AATCAAGTCTAACTATGATCACATCAC	57.460	33.333	0.00	0.00	43.01	3.06
5455	8782	6.846350	GCATGTTTGCTAATCAAGTCTAACT	58.154	36.000	0.00	0.00	45.77	2.24
5572	8899	4.474651	TCATCATCCACACTTCAAGGGTAT	59.525	41.667	0.00	0.00	25.53	2.73
5633	8960	3.373130	CGAGGGAAGATAAACCGGAAAAC	59.627	47.826	9.46	0.00	0.00	2.43
5672	8999	3.608073	GCTATTGCAACGGATGAACAAAC	59.392	43.478	0.00	0.00	39.41	2.93
5728	9055	2.505819	TCAACAGGGGAAGAATAGAGCC	59.494	50.000	0.00	0.00	0.00	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.